PFRMAT SS
TARGET T0113
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0113.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 659.662
METHOD
MODEL 1
M C 0.82
A C 0.80
A C 0.82
A C 0.80
V C 0.73
R C 0.62
S C 0.67
V C 0.82
K C 0.91
G C 0.95
L C 0.67
V E 0.82
A E 0.96
V E 0.99
I E 0.97
T E 0.86
G C 0.56
G C 0.88
A C 0.71
S H 0.59
G H 0.78
L H 0.92
G H 0.96
L H 0.99
S H 0.99
T H 1.00
A H 1.00
K H 1.00
R H 0.99
L H 0.99
V H 0.99
G H 0.97
Q H 0.89
G C 0.99
A C 0.95
T C 0.56
A E 0.96
V E 0.99
L E 0.98
L E 0.88
D C 0.50
V C 0.89
P C 0.97
N H 0.88
S H 0.95
E H 0.97
G H 0.99
E H 0.99
T H 0.99
E H 0.99
A H 0.99
K H 0.98
K H 0.97
L H 0.85
G C 0.89
G C 0.96
N C 0.83
C E 0.66
I E 0.93
F E 0.97
A E 0.94
P E 0.83
A E 0.55
N C 0.68
V C 0.84
T C 0.92
S C 0.95
E H 0.94
K H 0.97
E H 0.98
V H 0.99
Q H 0.99
A H 1.00
A H 1.00
L H 1.00
T H 1.00
L H 0.99
A H 0.99
K H 0.98
E H 0.97
K H 0.93
F H 0.67
G C 0.95
R C 0.93
I C 0.79
D C 0.66
V E 0.94
A E 0.97
V E 0.95
N E 0.78
C C 0.62
A C 0.54
G C 0.42
I C 0.50
A C 0.63
V C 0.82
A C 0.95
I C 0.78
K C 0.72
T C 0.65
Y C 0.69
H C 0.72
E C 0.70
K C 0.80
K C 0.79
N C 0.76
Q C 0.75
V C 0.76
H C 0.87
T C 0.94
L H 0.93
E H 0.93
D H 0.94
F H 0.96
Q H 0.96
R H 0.96
V H 0.94
I H 0.92
N H 0.84
V H 0.70
N C 0.50
L H 0.70
I H 0.88
G H 0.96
T H 0.98
F H 0.99
N H 0.99
V H 1.00
I H 0.99
R H 0.99
L H 0.98
V H 0.95
A H 0.87
G H 0.77
V H 0.66
M H 0.52
G C 0.69
Q C 0.93
N H 0.65
E H 0.62
P H 0.58
D C 0.52
Q C 0.71
G C 0.88
G C 0.93
Q C 0.95
R C 0.91
G E 0.53
V E 0.87
I E 0.98
I E 0.99
N E 0.97
T E 0.92
A E 0.71
S E 0.54
V C 0.47
A C 0.44
A C 0.41
F C 0.50
E C 0.60
G C 0.75
Q C 0.83
V C 0.81
G C 0.71
Q C 0.51
A H 0.59
A H 0.78
Y H 0.86
S H 0.93
A H 0.96
S H 0.97
K H 0.99
G H 0.99
G H 0.99
I H 0.99
V H 0.99
G H 0.99
M H 0.99
T H 0.98
L H 0.99
P H 0.98
I H 0.97
A H 0.97
R H 0.95
D H 0.92
L H 0.87
A H 0.53
P C 0.51
I C 0.74
G C 0.96
I E 0.52
R E 0.92
V E 0.97
V E 0.97
T E 0.96
I E 0.86
A E 0.50
P C 0.77
G C 0.79
L C 0.65
F C 0.66
A C 0.71
T C 0.79
P C 0.73
L C 0.62
L C 0.59
T C 0.62
T C 0.67
L C 0.71
P C 0.81
D H 0.68
K H 0.77
V H 0.83
R H 0.85
N H 0.89
F H 0.87
L H 0.84
A H 0.79
S H 0.73
Q H 0.59
V C 0.57
P C 0.60
F C 0.62
P C 0.65
S C 0.73
R C 0.75
L C 0.81
G C 0.88
D C 0.93
P H 0.92
A H 0.96
E H 0.97
Y H 0.97
A H 0.98
H H 0.98
L H 0.97
V H 0.97
Q H 0.97
M H 0.95
V H 0.85
I H 0.64
E C 0.47
N C 0.64
P C 0.75
F C 0.79
L C 0.85
N C 0.79
G C 0.64
E E 0.67
V E 0.90
I E 0.92
R E 0.88
L E 0.69
D C 0.71
G C 0.84
A C 0.80
I C 0.60
R C 0.65
M C 0.66
Q C 0.84
P C 0.97
END