# TARGET T0113 # Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net # This is a 4-layer network, with # window units # 5 10 # 7 10 # 5 10 # 11 3 (1 EHL2 ) # The input amino acid frequencies were determined from # alignment T0113.t2k.a2m.gz # with weighted counts, using EntropyWeight(1.4 bits/column, 10) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 659.662 # # CHAIN 1 Pos AA E H C 10N 1S 5N 5N 5N 1 M 0.084 0.097 0.819 2 A 0.115 0.087 0.798 3 A 0.092 0.093 0.816 4 A 0.098 0.100 0.802 5 V 0.147 0.123 0.730 6 R 0.285 0.096 0.619 7 S 0.247 0.083 0.670 8 V 0.084 0.095 0.821 9 K 0.029 0.062 0.909 10 G 0.031 0.016 0.954 11 L 0.329 0.004 0.666 12 V 0.816 0.001 0.183 13 A 0.961 0.001 0.038 14 V 0.988 0.001 0.011 15 I 0.967 0.003 0.030 16 T 0.856 0.003 0.141 17 G 0.428 0.009 0.563 18 G 0.052 0.070 0.879 19 A 0.020 0.267 0.712 20 S 0.014 0.585 0.401 21 G 0.012 0.777 0.212 22 L 0.007 0.921 0.072 23 G 0.003 0.959 0.037 24 L 0.001 0.989 0.010 25 S 0.001 0.993 0.006 26 T 0.001 0.997 0.003 27 A 0.001 0.996 0.004 28 K 0.001 0.996 0.004 29 R 0.001 0.994 0.006 30 L 0.001 0.992 0.008 31 V 0.001 0.989 0.011 32 G 0.001 0.973 0.027 33 Q 0.001 0.890 0.109 34 G 0.003 0.012 0.985 35 A 0.044 0.002 0.955 36 T 0.442 0.001 0.558 37 A 0.965 0.001 0.035 38 V 0.993 0.001 0.007 39 L 0.980 0.001 0.019 40 L 0.884 0.002 0.114 41 D 0.495 0.004 0.501 42 V 0.101 0.009 0.890 43 P 0.016 0.015 0.969 44 N 0.001 0.878 0.121 45 S 0.001 0.946 0.053 46 E 0.001 0.972 0.027 47 G 0.001 0.986 0.013 48 E 0.001 0.992 0.007 49 T 0.001 0.993 0.007 50 E 0.001 0.991 0.009 51 A 0.001 0.988 0.011 52 K 0.001 0.982 0.018 53 K 0.001 0.967 0.033 54 L 0.002 0.855 0.144 55 G 0.003 0.105 0.892 56 G 0.017 0.027 0.956 57 N 0.164 0.008 0.828 58 C 0.657 0.003 0.340 59 I 0.928 0.002 0.070 60 F 0.968 0.002 0.030 61 A 0.941 0.003 0.056 62 P 0.833 0.005 0.162 63 A 0.552 0.006 0.441 64 N 0.312 0.006 0.682 65 V 0.112 0.045 0.843 66 T 0.042 0.037 0.921 67 S 0.017 0.035 0.948 68 E 0.001 0.944 0.055 69 K 0.001 0.965 0.034 70 E 0.001 0.975 0.025 71 V 0.001 0.992 0.008 72 Q 0.001 0.994 0.005 73 A 0.001 0.996 0.004 74 A 0.001 0.996 0.004 75 L 0.001 0.995 0.005 76 T 0.001 0.996 0.004 77 L 0.001 0.993 0.007 78 A 0.001 0.986 0.013 79 K 0.001 0.980 0.019 80 E 0.001 0.970 0.030 81 K 0.001 0.930 0.069 82 F 0.005 0.667 0.328 83 G 0.003 0.052 0.945 84 R 0.040 0.034 0.926 85 I 0.178 0.028 0.795 86 D 0.316 0.021 0.662 87 V 0.943 0.019 0.038 88 A 0.972 0.014 0.014 89 V 0.953 0.015 0.032 90 N 0.784 0.029 0.187 91 C 0.314 0.067 0.619 92 A 0.315 0.142 0.543 93 G 0.369 0.210 0.421 94 I 0.357 0.139 0.504 95 A 0.272 0.096 0.632 96 V 0.125 0.059 0.816 97 A 0.028 0.018 0.954 98 I 0.018 0.200 0.781 99 K 0.029 0.252 0.719 100 T 0.054 0.294 0.652 101 Y 0.057 0.252 0.692 102 H 0.059 0.224 0.717 103 E 0.044 0.252 0.703 104 K 0.050 0.150 0.799 105 K 0.084 0.129 0.787 106 N 0.074 0.167 0.760 107 Q 0.092 0.158 0.750 108 V 0.091 0.149 0.760 109 H 0.081 0.052 0.867 110 T 0.034 0.024 0.942 111 L 0.001 0.928 0.071 112 E 0.001 0.930 0.070 113 D 0.002 0.941 0.058 114 F 0.004 0.957 0.039 115 Q 0.008 0.962 0.030 116 R 0.010 0.963 0.027 117 V 0.015 0.942 0.043 118 I 0.023 0.921 0.055 119 N 0.045 0.835 0.120 120 V 0.071 0.697 0.232 121 N 0.099 0.405 0.496 122 L 0.048 0.703 0.249 123 I 0.020 0.879 0.100 124 G 0.012 0.955 0.033 125 T 0.007 0.980 0.013 126 F 0.004 0.990 0.006 127 N 0.001 0.995 0.004 128 V 0.001 0.995 0.004 129 I 0.001 0.992 0.007 130 R 0.001 0.992 0.008 131 L 0.001 0.982 0.018 132 V 0.001 0.951 0.048 133 A 0.002 0.867 0.131 134 G 0.004 0.771 0.225 135 V 0.005 0.664 0.331 136 M 0.011 0.523 0.466 137 G 0.015 0.298 0.687 138 Q 0.009 0.061 0.931 139 N 0.007 0.654 0.339 140 E 0.029 0.624 0.347 141 P 0.081 0.582 0.337 142 D 0.179 0.300 0.521 143 Q 0.109 0.186 0.705 144 G 0.035 0.086 0.879 145 G 0.037 0.029 0.934 146 Q 0.041 0.011 0.949 147 R 0.087 0.003 0.910 148 G 0.534 0.001 0.465 149 V 0.871 0.001 0.128 150 I 0.982 0.001 0.017 151 I 0.989 0.001 0.010 152 N 0.972 0.001 0.027 153 T 0.918 0.003 0.079 154 A 0.708 0.010 0.281 155 S 0.538 0.039 0.423 156 V 0.414 0.119 0.467 157 A 0.361 0.197 0.442 158 A 0.395 0.200 0.405 159 F 0.331 0.171 0.498 160 E 0.266 0.132 0.602 161 G 0.152 0.099 0.749 162 Q 0.075 0.096 0.828 163 V 0.044 0.148 0.808 164 G 0.031 0.261 0.707 165 Q 0.054 0.432 0.514 166 A 0.058 0.588 0.354 167 A 0.045 0.778 0.177 168 Y 0.032 0.857 0.111 169 S 0.013 0.927 0.060 170 A 0.005 0.955 0.040 171 S 0.001 0.972 0.026 172 K 0.001 0.985 0.014 173 G 0.001 0.986 0.014 174 G 0.001 0.990 0.010 175 I 0.001 0.989 0.011 176 V 0.001 0.990 0.010 177 G 0.001 0.990 0.010 178 M 0.001 0.985 0.015 179 T 0.001 0.983 0.017 180 L 0.001 0.985 0.015 181 P 0.001 0.978 0.022 182 I 0.001 0.968 0.032 183 A 0.001 0.969 0.030 184 R 0.001 0.946 0.053 185 D 0.003 0.921 0.076 186 L 0.004 0.870 0.126 187 A 0.005 0.532 0.462 188 P 0.012 0.474 0.514 189 I 0.024 0.240 0.736 190 G 0.034 0.006 0.960 191 I 0.521 0.003 0.475 192 R 0.920 0.001 0.079 193 V 0.975 0.001 0.024 194 V 0.974 0.001 0.025 195 T 0.958 0.001 0.040 196 I 0.856 0.002 0.142 197 A 0.504 0.005 0.491 198 P 0.205 0.021 0.774 199 G 0.162 0.053 0.786 200 L 0.230 0.118 0.651 201 F 0.219 0.116 0.665 202 A 0.170 0.117 0.712 203 T 0.069 0.137 0.795 204 P 0.050 0.219 0.731 205 L 0.050 0.332 0.618 206 L 0.056 0.351 0.593 207 T 0.052 0.332 0.615 208 T 0.048 0.284 0.668 209 L 0.034 0.256 0.710 210 P 0.015 0.176 0.809 211 D 0.006 0.684 0.310 212 K 0.006 0.768 0.226 213 V 0.007 0.828 0.165 214 R 0.011 0.849 0.140 215 N 0.012 0.888 0.100 216 F 0.016 0.874 0.110 217 L 0.022 0.844 0.134 218 A 0.030 0.792 0.178 219 S 0.032 0.734 0.234 220 Q 0.039 0.588 0.373 221 V 0.060 0.370 0.570 222 P 0.054 0.346 0.600 223 F 0.054 0.329 0.616 224 P 0.060 0.291 0.649 225 S 0.059 0.214 0.727 226 R 0.092 0.155 0.754 227 L 0.088 0.098 0.814 228 G 0.073 0.051 0.876 229 D 0.031 0.039 0.930 230 P 0.002 0.917 0.081 231 A 0.001 0.962 0.037 232 E 0.001 0.974 0.024 233 Y 0.003 0.970 0.027 234 A 0.004 0.977 0.020 235 H 0.005 0.979 0.016 236 L 0.008 0.972 0.020 237 V 0.017 0.972 0.012 238 Q 0.025 0.967 0.008 239 M 0.042 0.945 0.012 240 V 0.103 0.851 0.046 241 I 0.183 0.641 0.176 242 E 0.122 0.409 0.469 243 N 0.053 0.309 0.638 244 P 0.073 0.174 0.752 245 F 0.128 0.083 0.790 246 L 0.130 0.024 0.846 247 N 0.191 0.020 0.790 248 G 0.331 0.028 0.641 249 E 0.672 0.019 0.309 250 V 0.897 0.013 0.090 251 I 0.923 0.007 0.070 252 R 0.876 0.006 0.118 253 L 0.689 0.008 0.303 254 D 0.270 0.024 0.707 255 G 0.086 0.073 0.841 256 A 0.076 0.119 0.805 257 I 0.250 0.152 0.598 258 R 0.197 0.151 0.652 259 M 0.215 0.124 0.662 260 Q 0.107 0.056 0.837 261 P 0.017 0.012 0.971