PFRMAT SS TARGET T0113 AUTHOR 3670-4530-6947 METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 10 METHOD 7 10 METHOD 5 10 METHOD 11 3 (1 EHL2 ) METHOD The input amino acid frequencies were determined from METHOD alignment T0113.t2k.a2m.gz METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10) METHOD The weighting was determined by the posterior distribution METHOD after regularizing with /projects/compbio/lib/recode3.20comp. METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 659.662 METHOD MODEL 1 M C 0.819 A C 0.798 A C 0.816 A C 0.802 V C 0.730 R C 0.619 S C 0.670 V C 0.821 K C 0.909 G C 0.954 L C 0.666 V E 0.816 A E 0.961 V E 0.988 I E 0.967 T E 0.856 G C 0.563 G C 0.879 A C 0.712 S H 0.585 G H 0.777 L H 0.921 G H 0.959 L H 0.989 S H 0.993 T H 0.997 A H 0.996 K H 0.996 R H 0.994 L H 0.992 V H 0.989 G H 0.973 Q H 0.890 G C 0.985 A C 0.955 T C 0.558 A E 0.965 V E 0.993 L E 0.980 L E 0.884 D C 0.501 V C 0.890 P C 0.969 N H 0.878 S H 0.946 E H 0.972 G H 0.986 E H 0.992 T H 0.993 E H 0.991 A H 0.988 K H 0.982 K H 0.967 L H 0.855 G C 0.892 G C 0.956 N C 0.828 C E 0.657 I E 0.928 F E 0.968 A E 0.941 P E 0.833 A E 0.552 N C 0.682 V C 0.843 T C 0.921 S C 0.948 E H 0.944 K H 0.965 E H 0.975 V H 0.992 Q H 0.994 A H 0.996 A H 0.996 L H 0.995 T H 0.996 L H 0.993 A H 0.986 K H 0.980 E H 0.970 K H 0.930 F H 0.667 G C 0.945 R C 0.926 I C 0.795 D C 0.662 V E 0.943 A E 0.972 V E 0.953 N E 0.784 C C 0.619 A C 0.543 G C 0.421 I C 0.504 A C 0.632 V C 0.816 A C 0.954 I C 0.781 K C 0.719 T C 0.652 Y C 0.692 H C 0.717 E C 0.703 K C 0.799 K C 0.787 N C 0.760 Q C 0.750 V C 0.760 H C 0.867 T C 0.942 L H 0.928 E H 0.930 D H 0.941 F H 0.957 Q H 0.962 R H 0.963 V H 0.942 I H 0.921 N H 0.835 V H 0.697 N C 0.496 L H 0.703 I H 0.879 G H 0.955 T H 0.980 F H 0.990 N H 0.995 V H 0.995 I H 0.992 R H 0.992 L H 0.982 V H 0.951 A H 0.867 G H 0.771 V H 0.664 M H 0.523 G C 0.687 Q C 0.931 N H 0.654 E H 0.624 P H 0.582 D C 0.521 Q C 0.705 G C 0.879 G C 0.934 Q C 0.949 R C 0.910 G E 0.534 V E 0.871 I E 0.982 I E 0.989 N E 0.972 T E 0.918 A E 0.708 S E 0.538 V C 0.467 A C 0.442 A C 0.405 F C 0.498 E C 0.602 G C 0.749 Q C 0.828 V C 0.808 G C 0.707 Q C 0.514 A H 0.588 A H 0.778 Y H 0.857 S H 0.927 A H 0.955 S H 0.972 K H 0.985 G H 0.986 G H 0.990 I H 0.989 V H 0.990 G H 0.990 M H 0.985 T H 0.983 L H 0.985 P H 0.978 I H 0.968 A H 0.969 R H 0.946 D H 0.921 L H 0.870 A H 0.532 P C 0.514 I C 0.736 G C 0.960 I E 0.521 R E 0.920 V E 0.975 V E 0.974 T E 0.958 I E 0.856 A E 0.504 P C 0.774 G C 0.786 L C 0.651 F C 0.665 A C 0.712 T C 0.795 P C 0.731 L C 0.618 L C 0.593 T C 0.615 T C 0.668 L C 0.710 P C 0.809 D H 0.684 K H 0.768 V H 0.828 R H 0.849 N H 0.888 F H 0.874 L H 0.844 A H 0.792 S H 0.734 Q H 0.588 V C 0.570 P C 0.600 F C 0.616 P C 0.649 S C 0.727 R C 0.754 L C 0.814 G C 0.876 D C 0.930 P H 0.917 A H 0.962 E H 0.974 Y H 0.970 A H 0.977 H H 0.979 L H 0.972 V H 0.972 Q H 0.967 M H 0.945 V H 0.851 I H 0.641 E C 0.469 N C 0.638 P C 0.752 F C 0.790 L C 0.846 N C 0.790 G C 0.641 E E 0.672 V E 0.897 I E 0.923 R E 0.876 L E 0.689 D C 0.707 G C 0.841 A C 0.805 I C 0.598 R C 0.652 M C 0.662 Q C 0.837 P C 0.971 END