make -k T0112-blast.rdb T0112-double-blast.rdb make[1]: Entering directory `/auto/projects/compbio/experiments/casp4/t112' /projects/compbio/experiments/casp4/scripts/single-blast -q T0112.seq -interdb /projects/compbio/data/nrp/nr -db /projects/compbio/data/pdb/all-protein > T0112-blast.rdb starting T0112 with E=10 /projects/compbio/experiments/casp4/scripts/double-blast -q T0112.seq -interdb /projects/compbio/data/nrp/nr -db /projects/compbio/data/pdb/all-protein > T0112-double-blast.rdb starting T0112 with E=0.000050 T0112 T0112 blasting: T0112 gi|416586|sp|Q03505|ADH1_RABIT_12:112 blasting: T0112 gi|416586|sp|Q03505|ADH1_RABIT_184:372 blasting: T0112 gi|1351879|sp|P49384|ADH3_KLULA_36:321 blasting: T0112 gi|1351881|sp|P49385|ADH4_KLULA_37:322 blasting: T0112 gi|1351877|sp|P49383|ADH2_KLULA_10:271 blasting: T0112 gi|139822|sp|P22144|XYL2_PICST_4:359 blasting: T0112 gi|1168350|sp|P00330|ADH1_YEAST_10:271 blasting: T0112 gi|1168729|sp|Q02971|CAD2_ARATH_33:284 blasting: T0112 gi|1168730|sp|Q02972|CAD3_ARATH_30:285 blasting: T0112 gi|399165|sp|P31655|CAD2_EUCGU_35:231 blasting: T0112 gi|113436|sp|P17648|ADH_FRAAN_23:116 blasting: T0112 gi|113436|sp|P17648|ADH_FRAAN_196:364 blasting: T0112 gi|113357|sp|P05336|ADH1_HORVU_22:115 blasting: T0112 gi|113357|sp|P05336|ADH1_HORVU_195:367 blasting: T0112 gi|113376|sp|P10847|ADH2_HORVU_22:115 blasting: T0112 gi|113376|sp|P10847|ADH2_HORVU_117:357 blasting: T0112 gi|113385|sp|P10848|ADH3_HORVU_22:115 blasting: T0112 gi|113385|sp|P10848|ADH3_HORVU_162:367 blasting: T0112 gi|399168|sp|P31656|CADH_MEDSA_36:232 blasting: T0112 gi|231675|sp|P30359|CAD4_TOBAC_35:242 blasting: T0112 gi|231676|sp|P30360|CAD9_TOBAC_35:276 blasting: T0112 gi|113360|sp|P20306|ADH1_ORYSA_31:113 blasting: T0112 gi|113360|sp|P20306|ADH1_ORYSA_177:364 blasting: T0112 gi|113378|sp|P18332|ADH2_ORYSA_11:114 blasting: T0112 gi|113378|sp|P18332|ADH2_ORYSA_194:363 blasting: T0112 gi|113362|sp|P14219|ADH1_PENAM_22:115 blasting: T0112 gi|113362|sp|P14219|ADH1_PENAM_195:367 blasting: T0112 gi|113363|sp|P25141|ADH1_PETHY_24:117 blasting: T0112 gi|113363|sp|P25141|ADH1_PETHY_119:379 blasting: T0112 gi|113361|sp|P12886|ADH1_PEA_23:116 blasting: T0112 gi|113361|sp|P12886|ADH1_PEA_156:364 blasting: T0112 gi|113366|sp|P13603|ADH1_TRIRP_23:114 blasting: T0112 gi|113366|sp|P13603|ADH1_TRIRP_156:364 blasting: T0112 gi|113359|sp|P00333|ADH1_MAIZE_22:115 blasting: T0112 gi|113359|sp|P00333|ADH1_MAIZE_195:367 blasting: T0112 gi|22122|emb|CAA27682.1|_22:115 blasting: T0112 gi|22122|emb|CAA27682.1|_195:367 blasting: T0112 gi|82669|pir||S04571_22:115 blasting: T0112 gi|82669|pir||S04571_195:367 blasting: T0112 gi|113377|sp|P04707|ADH2_MAIZE_22:115 blasting: T0112 gi|113377|sp|P04707|ADH2_MAIZE_162:367 blasting: T0112 gi|28404|emb|CAA27842.1|_12:112 blasting: T0112 gi|28404|emb|CAA27842.1|_184:372 blasting: T0112 gi|113394|sp|P00325|ADHB_HUMAN_12:112 blasting: T0112 gi|113394|sp|P00325|ADHB_HUMAN_188:361 blasting: T0112 gi|135560|sp|P07913|TDH_ECOLI_19:339 blasting: T0112 gi|586014|sp|P37084|SORE_KLEPN_9:194 blasting: T0112 gi|399009|sp|P31975|ADH_MYCTU_25:277 blasting: T0112 gi|99004|pir||S18989_69:227 blasting: T0112 gi|62841|emb|CAA38433.1|_16:65 blasting: T0112 gi|62841|emb|CAA38433.1|_114:329 blasting: T0112 gi|65892|pir||DECHA1_11:111 blasting: T0112 gi|65892|pir||DECHA1_160:375 blasting: T0112 gi|113410|sp|P12711|ADHX_RAT_19:110 blasting: T0112 gi|113410|sp|P12711|ADHX_RAT_114:371 blasting: T0112 gi|117549|sp|P11415|QOR_CAVPO_91:269 blasting: T0112 gi|117549|sp|P11415|QOR_CAVPO_30:93 blasting: T0112 gi|113442|sp|P00332|ADH_SCHPO_8:298 blasting: T0112 gi|113412|sp|P06525|ADH1_ARATH_22:115 blasting: T0112 gi|113412|sp|P06525|ADH1_ARATH_155:363 blasting: T0112 gi|113379|sp|P14674|ADH2_SOLTU_23:114 blasting: T0112 gi|113379|sp|P14674|ADH2_SOLTU_196:368 blasting: T0112 gi|113386|sp|P14675|ADH3_SOLTU_23:114 blasting: T0112 gi|113386|sp|P14675|ADH3_SOLTU_196:368 blasting: T0112 gi|113411|sp|P14940|ADH_ALCEU_7:363 blasting: T0112 gi|113368|sp|P20368|ADH1_ZYMMO_3:319 blasting: T0112 gi|113443|sp|P14941|ADH_THEBR_17:349 blasting: T0112 gi|81729|pir||S10019_23:116 blasting: T0112 gi|81729|pir||S10019_196:364 blasting: T0112 gi|82260|pir||S11853_23:114 blasting: T0112 gi|82260|pir||S11853_196:368 blasting: T0112 gi|82668|pir||A05102_22:115 blasting: T0112 gi|82668|pir||A05102_195:367 blasting: T0112 gi|113358|sp|P20369|ADH1_KLULA_12:273 blasting: T0112 gi|82844|pir||S09293_36:140 blasting: T0112 gi|113350|sp|P08843|ADH1_EMENI_22:313 blasting: T0112 gi|113382|sp|P07754|ADH3_EMENI_22:316 blasting: T0112 gi|113383|sp|P19631|ADH3_COTJA_11:111 blasting: T0112 gi|113383|sp|P19631|ADH3_COTJA_160:375 blasting: T0112 gi|113440|sp|P14139|ADH_PAPHA_12:118 blasting: T0112 gi|113440|sp|P14139|ADH_PAPHA_188:372 blasting: T0112 gi|113407|sp|P19854|ADHX_HORSE_21:110 blasting: T0112 gi|113407|sp|P19854|ADHX_HORSE_148:373 blasting: T0112 gi|89883|pir||S10065_4:347 blasting: T0112 gi|91930|pir||A26468_12:112 blasting: T0112 gi|91930|pir||A26468_185:375 blasting: T0112 gi|101121|pir||S17253_37:322 blasting: T0112 gi|113364|sp|P22797|ADH1_RANPE_21:112 blasting: T0112 gi|113364|sp|P22797|ADH1_RANPE_160:372 blasting: T0112 gi|105241|pir||S10621_12:112 blasting: T0112 gi|105241|pir||S10621_188:308 blasting: T0112 gi|113351|sp|P23991|ADH1_CHICK_12:112 blasting: T0112 gi|113351|sp|P23991|ADH1_CHICK_161:376 blasting: T0112 gi|113365|sp|P14673|ADH1_SOLTU_23:114 blasting: T0112 gi|113365|sp|P14673|ADH1_SOLTU_196:368 blasting: T0112 gi|113392|sp|P06757|ADHA_RAT_12:112 blasting: T0112 gi|113392|sp|P06757|ADHA_RAT_185:375 blasting: T0112 gi|113397|sp|P00327|ADHE_HORSE_12:158 blasting: T0112 gi|113397|sp|P00327|ADHE_HORSE_184:364 blasting: T0112 gi|113406|sp|P00328|ADHS_HORSE_12:157 blasting: T0112 gi|113406|sp|P00328|ADHS_HORSE_183:371 blasting: T0112 gi|113408|sp|P11766|ADHX_HUMAN_20:111 blasting: T0112 gi|113408|sp|P11766|ADHX_HUMAN_149:360 blasting: T0112 gi|113414|sp|P25984|ADH_CLOBE_17:349 blasting: T0112 gi|113437|sp|P26325|ADH_GADCA_11:112 blasting: T0112 gi|113437|sp|P26325|ADH_GADCA_160:373 blasting: T0112 gi|113439|sp|P28469|ADH_MACMU_12:112 blasting: T0112 gi|113439|sp|P28469|ADH_MACMU_184:372 blasting: T0112 gi|118625|sp|P07846|DHSO_SHEEP_4:347 blasting: T0112 gi|146900|gb|AAA72122.1|_25:265 blasting: T0112 gi|417868|sp|P33010|TERD_PSESP_135:281 blasting: T0112 gi|417868|sp|P33010|TERD_PSESP_34:84 blasting: T0112 gi|151646|gb|AAA26024.1|_10:106 blasting: T0112 gi|151646|gb|AAA26024.1|_156:297 blasting: T0112 gi|543776|sp|P35630|ADH1_ENTHI_16:349 blasting: T0112 gi|168407|gb|AAA33434.1|_22:115 blasting: T0112 gi|168407|gb|AAA33434.1|_195:367 blasting: T0112 gi|169757|gb|AAA33889.1|_11:114 blasting: T0112 gi|169757|gb|AAA33889.1|_194:363 blasting: T0112 gi|399007|sp|P28032|ADH2_LYCES_23:114 blasting: T0112 gi|399007|sp|P28032|ADH2_LYCES_196:368 blasting: T0112 gi|544276|sp|Q06099|FADH_CANMA_24:115 blasting: T0112 gi|544276|sp|Q06099|FADH_CANMA_191:366 blasting: T0112 gi|171023|gb|AAA34409.1|_37:322 blasting: T0112 gi|171029|gb|AAA34411.1|_9:271 blasting: T0112 gi|171029|gb|AAA34411.1|_243:299 blasting: T0112 gi|178098|gb|AAA51884.1|_12:112 blasting: T0112 gi|178098|gb|AAA51884.1|_188:361 blasting: T0112 gi|1168347|sp|P12311|ADH1_BACST_1:325 blasting: T0112 gi|399373|sp|Q02912|DHSO_BOMMO_2:344 blasting: T0112 gi|223142|prf||0512226A_7:173 blasting: T0112 gi|223142|prf||0512226A_188:221 blasting: T0112 gi|1941935|pdb|3BTO|A_11:157 blasting: T0112 gi|1941935|pdb|3BTO|A_183:363 blasting: T0112 gi|231239|pdb|7ADH|_11:157 blasting: T0112 gi|231239|pdb|7ADH|_187:363 blasting: T0112 gi|728808|sp|P39462|ADH1_SULSO_13:332 blasting: T0112 gi|1168734|sp|P31657|CADH_POPDE_35:288 blasting: T0112 gi|2147093|pir||A48257_12:112 blasting: T0112 gi|2147093|pir||A48257_160:374 blasting: T0112 gi|2147097|pir||I60970_12:112 blasting: T0112 gi|2147097|pir||I60970_160:374 blasting: T0112 gi|5902739|sp|Q64413|ADHA_GEOBU_12:112 blasting: T0112 gi|5902739|sp|Q64413|ADHA_GEOBU_160:374 blasting: T0112 gi|5915663|sp|Q64415|ADHA_GEOKN_12:112 blasting: T0112 gi|5915663|sp|Q64415|ADHA_GEOKN_178:374 blasting: T0112 gi|2147096|pir||I60974_12:112 blasting: T0112 gi|2147096|pir||I60974_178:374 blasting: T0112 gi|728802|sp|Q07288|ADH1_KLUMA_11:271 blasting: T0112 gi|300407|gb|AAB26666.1|_11:156 blasting: T0112 gi|300407|gb|AAB26666.1|_182:370 blasting: T0112 gi|461928|sp|Q06004|DHSO_BACSU_11:349 blasting: T0112 gi|388053|gb|AAB59302.1|_22:115 blasting: T0112 gi|388053|gb|AAB59302.1|_195:367 blasting: T0112 gi|584872|sp|Q08350|CADH_PICAB_35:242 blasting: T0112 gi|544158|sp|P36624|DHSO_SCHPO_2:342 blasting: T0112 gi|481230|pir||S38363_50:392 blasting: T0112 gi|399099|sp|Q02430|BCHC_RHOSH_5:93 blasting: T0112 gi|399099|sp|Q02430|BCHC_RHOSH_154:315 blasting: T0112 gi|416585|sp|P80222|ADH1_ALLMI_23:111 blasting: T0112 gi|416585|sp|P80222|ADH1_ALLMI_183:363 blasting: T0112 gi|1169603|sp|P46154|FADH_PSEPU_26:214 blasting: T0112 gi|1168349|sp|P41680|ADHA_PERMA_12:112 blasting: T0112 gi|1168349|sp|P41680|ADHA_PERMA_184:374 blasting: T0112 gi|1168352|sp|P41681|ADH2_PERMA_12:128 blasting: T0112 gi|1168352|sp|P41681|ADH2_PERMA_145:361 blasting: T0112 gi|421814|pir||S31571_35:288 blasting: T0112 gi|1168732|sp|P42754|CADH_PETCR_14:265 blasting: T0112 gi|439865|gb|AAA32683.1|_15:77 blasting: T0112 gi|1168346|sp|P41747|ADH1_ASPFL_15:296 blasting: T0112 gi|1168353|sp|P42328|ADH3_BACST_13:325 blasting: T0112 gi|445589|prf||1909341A_9:58 blasting: T0112 gi|445589|prf||1909341A_139:311 blasting: T0112 gi|1085621|pir||S53308_23:116 blasting: T0112 gi|1085621|pir||S53308_196:364 blasting: T0112 gi|1085622|pir||S53307_23:116 blasting: T0112 gi|1085622|pir||S53307_196:364 blasting: T0112 gi|3912994|sp|P81431|ADHX_OCTVU_11:113 blasting: T0112 gi|3912994|sp|P81431|ADHX_OCTVU_161:366 blasting: T0112 gi|469467|emb|CAA54911.1|_22:115 blasting: T0112 gi|469467|emb|CAA54911.1|_155:363 blasting: T0112 gi|1706771|sp|P09347|FDEH_PSEPU_6:357 blasting: T0112 gi|1168727|sp|P42495|CAD1_ARACO_31:242 blasting: T0112 gi|476739|gb|AAA25818.1|_4:111 blasting: T0112 gi|479539|pir||S34613_6:357 blasting: T0112 gi|479932|pir||S35669_23:111 blasting: T0112 gi|479932|pir||S35669_183:363 blasting: T0112 gi|731175|sp|P39849|XYLB_PSEPU_8:104 blasting: T0112 gi|731175|sp|P39849|XYLB_PSEPU_154:295 blasting: T0112 gi|1421403|pdb|1DEH|A_11:111 blasting: T0112 gi|1421403|pdb|1DEH|A_187:360 blasting: T0112 gi|494089|pdb|1HDY|A_11:111 blasting: T0112 gi|494089|pdb|1HDY|A_187:360 blasting: T0112 gi|494091|pdb|1HDZ|A_11:111 blasting: T0112 gi|494091|pdb|1HDZ|A_187:360 blasting: T0112 gi|585952|sp|P38105|RSPB_ECOLI_3:336 blasting: T0112 gi|4033691|sp|Q00796|DHSO_HUMAN_8:350 blasting: T0112 gi|1345955|sp|P47734|FADH_METMR_45:138 blasting: T0112 gi|1345955|sp|P47734|FADH_METMR_193:299 blasting: T0112 gi|1345955|sp|P47734|FADH_METMR_335:422 blasting: T0112 gi|1168359|sp|P46415|ADHX_DROME_13:114 blasting: T0112 gi|1168359|sp|P46415|ADHX_DROME_150:369 blasting: T0112 gi|1073393|pir||S49084_12:324 blasting: T0112 gi|508520|gb|AAA25324.1|_27:331 blasting: T0112 gi|529564|gb|AAB58982.1|_11:358 blasting: T0112 gi|732054|sp|P39346|IDND_ECOLI_31:334 blasting: T0112 gi|1361265|pir||S56495_39:279 blasting: T0112 gi|732112|sp|P39400|YJJN_ECOLI_6:329 blasting: T0112 gi|539057|pir||A61024_22:115 blasting: T0112 gi|539057|pir||A61024_162:367 blasting: T0112 gi|541675|emb|CAA53960.1|_24:130 blasting: T0112 gi|541675|emb|CAA53960.1|_171:372 blasting: T0112 gi|541847|pir||S42883_22:115 blasting: T0112 gi|541847|pir||S42883_155:300 blasting: T0112 gi|627982|pir||A53142_12:118 blasting: T0112 gi|627982|pir||A53142_183:360 blasting: T0112 gi|546494|gb|AAB30620.1|_90:270 blasting: T0112 gi|546494|gb|AAB30620.1|_29:92 blasting: T0112 gi|1169602|sp|P45382|FADH_PARDE_25:106 blasting: T0112 gi|1169602|sp|P45382|FADH_PARDE_172:361 blasting: T0112 gi|3913194|sp|Q43138|CAD3_STYHU_38:289 blasting: T0112 gi|1362105|pir||S57819_22:115 blasting: T0112 gi|1362105|pir||S57819_117:363 blasting: T0112 gi|551925|gb|AAA25762.1|_6:94 blasting: T0112 gi|553075|gb|AAA74638.1|_122:290 blasting: T0112 gi|553075|gb|AAA74638.1|_2:42 blasting: T0112 gi|553076|gb|AAA74640.1|_122:290 blasting: T0112 gi|553076|gb|AAA74640.1|_2:42 blasting: T0112 gi|1351874|sp|Q07264|ADH1_ZEALU_122:290 blasting: T0112 gi|1351874|sp|Q07264|ADH1_ZEALU_2:42 blasting: T0112 gi|3913193|sp|Q43137|CAD1_STYHU_31:280 blasting: T0112 gi|1168733|sp|P41637|CADH_PINTA_35:289 blasting: T0112 gi|1076239|pir||S49444_35:357 blasting: T0112 gi|558511|dbj|BAA04046.1|_31:192 blasting: T0112 gi|565054|emb|CAA44234.1|_112:254 blasting: T0112 gi|565054|emb|CAA44234.1|_16:89 blasting: T0112 gi|576627|gb|AAA53300.1|_11:321 blasting: T0112 gi|1168351|sp|P42327|ADH2_BACST_1:325 blasting: T0112 gi|2146727|pir||S71179_33:284 blasting: T0112 gi|1168728|sp|P42734|CAD1_ARATH_37:288 blasting: T0112 gi|598143|gb|AAB48003.1|_12:112 blasting: T0112 gi|598143|gb|AAB48003.1|_188:361 blasting: T0112 gi|1168348|sp|P43067|ADH1_CANAL_11:321 blasting: T0112 gi|6225009|sp|Q17335|ADHX_CAEEL_23:114 blasting: T0112 gi|6225009|sp|Q17335|ADHX_CAEEL_152:371 blasting: T0112 gi|1703176|sp|P50381|ADH3_SULSO_13:332 blasting: T0112 gi|626077|pir||A61504_1:194 blasting: T0112 gi|629510|pir||S45094_34:236 blasting: T0112 gi|631802|pir||S34774_1:66 blasting: T0112 gi|7430931|pir||T02927_162:367 blasting: T0112 gi|7430931|pir||T02927_71:115 blasting: T0112 gi|693790|gb|AAB32020.1|_11:111 blasting: T0112 gi|693790|gb|AAB32020.1|_183:259 blasting: T0112 gi|728803|sp|P80338|ADH1_STRCA_11:111 blasting: T0112 gi|728803|sp|P80338|ADH1_STRCA_183:259 blasting: T0112 gi|728805|sp|P39450|ADH3_PASPI_15:106 blasting: T0112 gi|728805|sp|P39450|ADH3_PASPI_142:355 blasting: T0112 gi|728807|sp|P80360|ADHX_MYXGL_12:113 blasting: T0112 gi|728807|sp|P80360|ADHX_MYXGL_178:362 blasting: T0112 gi|732035|sp|P27250|YJGB_ECOLI_25:265 blasting: T0112 gi|1345655|sp|P48523|CAD4_ARATH_36:333 blasting: T0112 gi|765141|gb|AAC44788.1|_19:331 blasting: T0112 gi|825622|emb|CAA27876.1|_10:59 blasting: T0112 gi|825622|emb|CAA27876.1|_131:319 blasting: T0112 gi|825623|emb|CAA39813.1|_22:128 blasting: T0112 gi|825623|emb|CAA39813.1|_165:379 blasting: T0112 gi|1076647|pir||S52973_23:114 blasting: T0112 gi|1076647|pir||S52973_180:274 blasting: T0112 gi|7466483|pir||C65078_6:81 blasting: T0112 gi|1351887|sp|P48977|ADH_MALDO_23:116 blasting: T0112 gi|1351887|sp|P48977|ADH_MALDO_163:364 blasting: T0112 gi|1361013|pir||S57525_15:106 blasting: T0112 gi|1361013|pir||S57525_142:366 blasting: T0112 gi|897913|gb|AAC15467.1|_37:288 blasting: T0112 gi|939834|dbj|BAA09660.1|_19:331 blasting: T0112 gi|2129910|pir||S60242_35:231 blasting: T0112 gi|975604|gb|AAB38424.1|_12:118 blasting: T0112 gi|975604|gb|AAB38424.1|_159:360 blasting: T0112 gi|2492771|sp|P72324|ADHI_RHOSH_25:106 blasting: T0112 gi|2492771|sp|P72324|ADHI_RHOSH_172:362 blasting: T0112 gi|2492773|sp|Q64442|DHSO_MOUSE_26:368 blasting: T0112 gi|7430956|pir||T07179_13:134 blasting: T0112 gi|7430956|pir||T07179_149:375 blasting: T0112 gi|1042208|gb|AAC60755.1|_11:111 blasting: T0112 gi|1042208|gb|AAC60755.1|_183:364 blasting: T0112 gi|1050335|gb|AAA88523.1|_17:220 blasting: T0112 gi|7427647|pir||F70090_48:280 blasting: T0112 gi|1172801|sp|P47199|QOR_MOUSE_91:271 blasting: T0112 gi|1172801|sp|P47199|QOR_MOUSE_30:93 blasting: T0112 gi|1168354|sp|P44557|ADH3_HAEIN_14:115 blasting: T0112 gi|1168354|sp|P44557|ADH3_HAEIN_151:375 blasting: T0112 gi|2492776|sp|Q57517|Y053_HAEIN_3:338 blasting: T0112 gi|1076579|pir||S52035_19:164 blasting: T0112 gi|1076579|pir||S52035_166:369 blasting: T0112 gi|1076580|pir||S52036_21:122 blasting: T0112 gi|1076580|pir||S52036_171:307 blasting: T0112 gi|1084038|pir||JC2516_3:110 blasting: T0112 gi|1096951|prf||2113201F_12:324 blasting: T0112 gi|2129562|pir||S71244_12:113 blasting: T0112 gi|2129562|pir||S71244_129:363 blasting: T0112 gi|1145784|gb|AAA84986.1|_19:331 blasting: T0112 gi|1703172|sp|P54202|ADH2_EMENI_30:288 blasting: T0112 gi|7430960|pir||T10824_29:292 blasting: T0112 gi|1208774|gb|AAC49539.1|_17:110 blasting: T0112 gi|1208774|gb|AAC49539.1|_112:358 blasting: T0112 gi|1208776|gb|AAC49540.1|_7:110 blasting: T0112 gi|1208776|gb|AAC49540.1|_112:358 blasting: T0112 gi|1208778|gb|AAC49541.1|_7:110 blasting: T0112 gi|1208778|gb|AAC49541.1|_157:358 blasting: T0112 gi|1208780|gb|AAC49542.1|_7:110 blasting: T0112 gi|1208780|gb|AAC49542.1|_157:358 blasting: T0112 gi|1208782|gb|AAC49543.1|_7:110 blasting: T0112 gi|1208782|gb|AAC49543.1|_157:358 blasting: T0112 gi|1208784|gb|AAC49544.1|_17:221 blasting: T0112 gi|1208786|gb|AAC49545.1|_17:108 blasting: T0112 gi|1208786|gb|AAC49545.1|_174:358 blasting: T0112 gi|1208790|gb|AAC49547.1|_7:110 blasting: T0112 gi|1208790|gb|AAC49547.1|_157:358 blasting: T0112 gi|1208792|gb|AAC49548.1|_7:110 blasting: T0112 gi|1208792|gb|AAC49548.1|_157:358 blasting: T0112 gi|1208794|gb|AAC49549.1|_17:221 blasting: T0112 gi|7427631|pir||S71570_12:115 blasting: T0112 gi|7427631|pir||S71570_155:363 blasting: T0112 gi|1223739|emb|CAA33487.1|_12:112 blasting: T0112 gi|1223739|emb|CAA33487.1|_194:362 blasting: T0112 gi|7427632|pir||S71571_12:115 blasting: T0112 gi|7427632|pir||S71571_155:363 blasting: T0112 gi|1297359|gb|AAA98984.1|_12:115 blasting: T0112 gi|1297359|gb|AAA98984.1|_155:363 blasting: T0112 gi|1311010|pdb|1HTB|A_11:111 blasting: T0112 gi|1311010|pdb|1HTB|A_187:360 blasting: T0112 gi|1351870|sp|P49645|ADH1_APTAU_12:112 blasting: T0112 gi|1351870|sp|P49645|ADH1_APTAU_184:365 blasting: T0112 gi|1351873|sp|P80512|ADH1_NAJNA_11:111 blasting: T0112 gi|1351873|sp|P80512|ADH1_NAJNA_159:374 blasting: T0112 gi|1351878|sp|P80468|ADH2_STRCA_21:124 blasting: T0112 gi|1351878|sp|P80468|ADH2_STRCA_188:378 blasting: T0112 gi|1351882|sp|P25405|ADHA_UROHA_11:126 blasting: T0112 gi|1351882|sp|P25405|ADHA_UROHA_183:364 blasting: T0112 gi|1351883|sp|P25406|ADHB_UROHA_11:111 blasting: T0112 gi|1351883|sp|P25406|ADHB_UROHA_144:372 blasting: T0112 gi|1351884|sp|P80467|ADHX_UROHA_19:110 blasting: T0112 gi|1351884|sp|P80467|ADHX_UROHA_148:359 blasting: T0112 gi|1363501|pir||JC4320_23:116 blasting: T0112 gi|1363501|pir||JC4320_180:368 blasting: T0112 gi|1384056|dbj|BAA12834.1|_23:103 blasting: T0112 gi|1384056|dbj|BAA12834.1|_139:363 blasting: T0112 gi|1408294|gb|AAC32671.1|_6:110 blasting: T0112 gi|1408294|gb|AAC32671.1|_144:289 blasting: T0112 gi|1421409|pdb|1CDO|A_11:112 blasting: T0112 gi|1421409|pdb|1CDO|A_160:373 blasting: T0112 gi|3334135|sp|Q40976|CADH_PINRA_35:242 blasting: T0112 gi|2492772|sp|Q96533|ADHX_ARATH_12:113 blasting: T0112 gi|2492772|sp|Q96533|ADHX_ARATH_129:363 blasting: T0112 gi|2147099|pir||S71131_17:349 blasting: T0112 gi|7430965|pir||D70706_6:108 blasting: T0112 gi|7430965|pir||D70706_139:356 blasting: T0112 gi|7430951|pir||E70695_92:239 blasting: T0112 gi|7430951|pir||E70695_4:85 blasting: T0112 gi|1583520|prf||2121217A_8:350 blasting: T0112 gi|6225006|sp|P73138|ADH3_SYNY3_15:106 blasting: T0112 gi|6225006|sp|P73138|ADH3_SYNY3_142:355 blasting: T0112 gi|7427642|pir||S76928_27:209 blasting: T0112 gi|1657523|gb|AAB18051.1|_24:268 blasting: T0112 gi|2492770|sp|P75214|ADH_MYCPN_19:349 blasting: T0112 gi|3023271|sp|P93436|ADHX_ORYSA_14:115 blasting: T0112 gi|3023271|sp|P93436|ADHX_ORYSA_119:365 blasting: T0112 gi|1705554|sp|P50746|CADH_EUCBO_35:230 blasting: T0112 gi|1723859|sp|P52048|YGGP_ECOLI_6:100 blasting: T0112 gi|7430950|pir||T12571_38:289 blasting: T0112 gi|2506166|sp|P37190|GATD_ECOLI_12:337 blasting: T0112 gi|2492769|sp|P39451|ADHP_ECOLI_3:301 blasting: T0112 gi|1742885|dbj|BAA15565.1|_1:259 blasting: T0112 gi|2492775|sp|P77280|YDJJ_ECOLI_3:343 blasting: T0112 gi|3915434|sp|P77539|YDJL_ECOLI_19:353 blasting: T0112 gi|6225316|sp|P78870|FADH_SCHPO_22:113 blasting: T0112 gi|6225316|sp|P78870|FADH_SCHPO_189:361 blasting: T0112 gi|1762912|gb|AAB39597.1|_23:228 blasting: T0112 gi|1762914|gb|AAB39598.1|_106:290 blasting: T0112 gi|3024986|sp|P77316|YBDR_ECOLI_1:104 blasting: T0112 gi|3024986|sp|P77316|YBDR_ECOLI_155:268 blasting: T0112 gi|7430969|pir||F70666_33:274 blasting: T0112 gi|7430972|pir||F70646_90:259 blasting: T0112 gi|2492774|sp|P75691|YAHK_ECOLI_24:268 blasting: T0112 gi|2506158|sp|P25437|ADH3_ECOLI_15:106 blasting: T0112 gi|2506158|sp|P25437|ADH3_ECOLI_142:366 blasting: T0112 gi|7427638|pir||A64901_13:311 blasting: T0112 gi|3025272|sp|P77360|YPHC_ECOLI_16:347 blasting: T0112 gi|5902742|sp|P79896|ADHX_SPAAU_22:113 blasting: T0112 gi|5902742|sp|P79896|ADHX_SPAAU_151:375 blasting: T0112 gi|1840425|gb|AAB65840.1|_23:116 blasting: T0112 gi|1840425|gb|AAB65840.1|_196:364 blasting: T0112 gi|6225010|sp|P93629|ADHX_MAIZE_14:115 blasting: T0112 gi|6225010|sp|P93629|ADHX_MAIZE_182:364 blasting: T0112 gi|1934622|gb|AAB80874.1|_1:192 blasting: T0112 gi|1934622|gb|AAB80874.1|_276:321 blasting: T0112 gi|6137442|pdb|1D1S|A_11:117 blasting: T0112 gi|6137442|pdb|1D1S|A_158:359 blasting: T0112 gi|1942871|pdb|1TEH|A_19:110 blasting: T0112 gi|1942871|pdb|1TEH|A_148:359 blasting: T0112 gi|1944211|dbj|BAA19616.1|_22:115 blasting: T0112 gi|1944211|dbj|BAA19616.1|_155:363 blasting: T0112 gi|1944212|dbj|BAA19617.1|_22:115 blasting: T0112 gi|1944212|dbj|BAA19617.1|_155:363 blasting: T0112 gi|1944215|dbj|BAA19620.1|_22:115 blasting: T0112 gi|1944215|dbj|BAA19620.1|_155:363 blasting: T0112 gi|1944216|dbj|BAA19621.1|_22:115 blasting: T0112 gi|1944216|dbj|BAA19621.1|_155:363 blasting: T0112 gi|1944403|dbj|BAA19487.1|_1:244 blasting: T0112 gi|7430937|pir||C69583_33:232 blasting: T0112 gi|7427640|pir||D69583_1:192 blasting: T0112 gi|7427640|pir||D69583_276:376 blasting: T0112 gi|2114038|emb|CAA73690.1|_9:318 blasting: T0112 gi|3912971|sp|O00097|ADH1_PICST_9:337 blasting: T0112 gi|2190578|gb|AAC23924.1|_15:226 blasting: T0112 gi|7430967|pir||F70903_176:378 blasting: T0112 gi|7430967|pir||F70903_30:117 blasting: T0112 gi|7430964|pir||D70517_3:336 blasting: T0112 gi|2228735|gb|AAB61921.1|_5:106 blasting: T0112 gi|2228735|gb|AAB61921.1|_182:355 blasting: T0112 gi|6647859|sp|O34268|TDH_XANCP_15:336 blasting: T0112 gi|3913182|sp|O24562|CADH_MAIZE_35:235 blasting: T0112 gi|2267137|gb|AAB63512.1|_89:201 blasting: T0112 gi|2267137|gb|AAB63512.1|_2:42 blasting: T0112 gi|2267141|gb|AAC12907.1|_89:201 blasting: T0112 gi|2267141|gb|AAC12907.1|_2:42 blasting: T0112 gi|2267145|gb|AAB63514.1|_89:201 blasting: T0112 gi|2267145|gb|AAB63514.1|_2:42 blasting: T0112 gi|2267153|gb|AAB63517.1|_89:201 blasting: T0112 gi|2267153|gb|AAB63517.1|_2:42 blasting: T0112 gi|2267159|gb|AAB63520.1|_89:201 blasting: T0112 gi|2267159|gb|AAB63520.1|_2:42 blasting: T0112 gi|3912972|sp|O13309|ADH2_PICST_9:319 blasting: T0112 gi|7427641|pir||H64657_29:242 blasting: T0112 gi|2327000|gb|AAB66676.1|_22:113 blasting: T0112 gi|2327000|gb|AAB66676.1|_185:373 blasting: T0112 gi|2352843|gb|AAB69288.1|_8:350 blasting: T0112 gi|3913181|sp|O22380|CADH_LOLPR_36:232 blasting: T0112 gi|2624642|pdb|1KEV|A_17:349 blasting: T0112 gi|2393920|gb|AAB70173.1|_89:201 blasting: T0112 gi|2393920|gb|AAB70173.1|_2:42 blasting: T0112 gi|2393922|gb|AAB70174.1|_89:201 blasting: T0112 gi|2393922|gb|AAB70174.1|_2:42 blasting: T0112 gi|2393931|gb|AAB70178.1|_89:201 blasting: T0112 gi|2393931|gb|AAB70178.1|_2:42 blasting: T0112 gi|2393933|gb|AAB70179.1|_89:201 blasting: T0112 gi|2393933|gb|AAB70179.1|_2:42 blasting: T0112 gi|2393935|gb|AAB70180.1|_89:201 blasting: T0112 gi|2393935|gb|AAB70180.1|_2:42 blasting: T0112 gi|2393937|gb|AAB70181.1|_89:201 blasting: T0112 gi|2393937|gb|AAB70181.1|_2:42 blasting: T0112 gi|2393939|gb|AAB70182.1|_89:201 blasting: T0112 gi|2393939|gb|AAB70182.1|_2:42 blasting: T0112 gi|2393941|gb|AAB70183.1|_89:201 blasting: T0112 gi|2393941|gb|AAB70183.1|_2:42 blasting: T0112 gi|2425078|gb|AAB70823.1|_19:331 blasting: T0112 gi|2439977|gb|AAC32303.1|_15:86 blasting: T0112 gi|2439977|gb|AAC32303.1|_91:241 blasting: T0112 gi|2459726|gb|AAB71801.1|_43:311 blasting: T0112 gi|2506157|sp|P27867|DHSO_RAT_50:392 blasting: T0112 gi|7427634|pir||H69789_7:343 blasting: T0112 gi|2529484|gb|AAB81207.1|_89:201 blasting: T0112 gi|2529484|gb|AAB81207.1|_2:42 blasting: T0112 gi|2570172|dbj|BAA22971.1|_22:115 blasting: T0112 gi|2570172|dbj|BAA22971.1|_155:363 blasting: T0112 gi|2570174|dbj|BAA22972.1|_22:115 blasting: T0112 gi|2570174|dbj|BAA22972.1|_155:363 blasting: T0112 gi|2570176|dbj|BAA22973.1|_22:115 blasting: T0112 gi|2570176|dbj|BAA22973.1|_155:363 blasting: T0112 gi|2570178|dbj|BAA22974.1|_22:115 blasting: T0112 gi|2570178|dbj|BAA22974.1|_155:363 blasting: T0112 gi|2570180|dbj|BAA22975.1|_22:115 blasting: T0112 gi|2570180|dbj|BAA22975.1|_155:363 blasting: T0112 gi|2570184|dbj|BAA22977.1|_22:115 blasting: T0112 gi|2570184|dbj|BAA22977.1|_155:363 blasting: T0112 gi|2570186|dbj|BAA22978.1|_22:115 blasting: T0112 gi|2570186|dbj|BAA22978.1|_155:363 blasting: T0112 gi|2570190|dbj|BAA22979.1|_22:115 blasting: T0112 gi|2570190|dbj|BAA22979.1|_155:363 blasting: T0112 gi|3182909|sp|O19053|ADHX_RABIT_20:111 blasting: T0112 gi|3182909|sp|O19053|ADHX_RABIT_149:360 blasting: T0112 gi|7427637|pir||F69852_18:337 blasting: T0112 gi|3915097|sp|O31776|TDH_BACSU_1:336 blasting: T0112 gi|7427648|pir||F69905_15:204 blasting: T0112 gi|2641344|gb|AAB86868.1|_130:318 blasting: T0112 gi|2641346|gb|AAB86869.1|_120:314 blasting: T0112 gi|2641346|gb|AAB86869.1|_1:66 blasting: T0112 gi|6225007|sp|O31186|ADHA_RHIME_15:305 blasting: T0112 gi|7482899|pir||E69512_41:396 blasting: T0112 gi|2687444|gb|AAC63569.1|_1:94 blasting: T0112 gi|2687444|gb|AAC63569.1|_111:257 blasting: T0112 gi|2687446|gb|AAC63570.1|_1:92 blasting: T0112 gi|2687446|gb|AAC63570.1|_111:257 blasting: T0112 gi|7484710|pir||T09775_1:214 blasting: T0112 gi|7484700|pir||T08059_1:94 blasting: T0112 gi|7484700|pir||T08059_111:257 blasting: T0112 gi|2687452|gb|AAC63573.1|_1:214 blasting: T0112 gi|2687454|gb|AAC63574.1|_1:94 blasting: T0112 gi|2687454|gb|AAC63574.1|_111:257 blasting: T0112 gi|2687456|gb|AAC63575.1|_1:94 blasting: T0112 gi|2687456|gb|AAC63575.1|_111:257 blasting: T0112 gi|7484711|pir||T09776_1:94 blasting: T0112 gi|7484711|pir||T09776_111:257 blasting: T0112 gi|2687461|gb|AAC63577.1|_1:94 blasting: T0112 gi|2687461|gb|AAC63577.1|_111:257 blasting: T0112 gi|2687463|gb|AAC63578.1|_1:94 blasting: T0112 gi|2687463|gb|AAC63578.1|_111:257 blasting: T0112 gi|7484701|pir||T08061_1:94 blasting: T0112 gi|7484701|pir||T08061_180:263 blasting: T0112 gi|2687467|gb|AAC63580.1|_1:94 blasting: T0112 gi|2687467|gb|AAC63580.1|_180:263 blasting: T0112 gi|6647422|sp|O57380|ADH4_RANPE_12:112 blasting: T0112 gi|6647422|sp|O57380|ADH4_RANPE_183:359 blasting: T0112 gi|2708273|gb|AAC46057.1|_5:203 blasting: T0112 gi|2746513|gb|AAC79415.1|_19:112 blasting: T0112 gi|2746513|gb|AAC79415.1|_152:297 blasting: T0112 gi|2746515|gb|AAC79416.1|_22:115 blasting: T0112 gi|2746515|gb|AAC79416.1|_179:363 blasting: T0112 gi|2746517|gb|AAC79417.1|_7:56 blasting: T0112 gi|2746517|gb|AAC79417.1|_98:217 blasting: T0112 gi|2746519|gb|AAC79418.1|_23:114 blasting: T0112 gi|2746519|gb|AAC79418.1|_180:364 blasting: T0112 gi|2746521|gb|AAC79419.1|_23:114 blasting: T0112 gi|2746521|gb|AAC79419.1|_156:275 blasting: T0112 gi|2746525|gb|AAC79421.1|_98:306 blasting: T0112 gi|2746525|gb|AAC79421.1|_7:58 blasting: T0112 gi|2746527|gb|AAC79422.1|_98:306 blasting: T0112 gi|2746527|gb|AAC79422.1|_7:58 blasting: T0112 gi|3912976|sp|O46649|ADHP_RABIT_22:117 blasting: T0112 gi|3912976|sp|O46649|ADHP_RABIT_165:363 blasting: T0112 gi|3912977|sp|O46650|ADHQ_RABIT_22:113 blasting: T0112 gi|3912977|sp|O46650|ADHQ_RABIT_165:378 blasting: T0112 gi|2764943|emb|CAA67297.1|_12:118 blasting: T0112 gi|2764943|emb|CAA67297.1|_183:360 blasting: T0112 gi|7430971|pir||A70871_93:209 blasting: T0112 gi|7430971|pir||A70871_15:100 blasting: T0112 gi|7430966|pir||B70853_5:226 blasting: T0112 gi|2815409|dbj|BAA24528.1|_5:327 blasting: T0112 gi|2833677|gb|AAC38358.1|_19:331 blasting: T0112 gi|7430968|pir||G70862_2:293 blasting: T0112 gi|7430940|pir||T05413_31:240 blasting: T0112 gi|7430970|pir||C70820_11:346 blasting: T0112 gi|2921430|gb|AAC04779.1|_12:119 blasting: T0112 gi|2921430|gb|AAC04779.1|_138:297 blasting: T0112 gi|2921435|gb|AAC04784.1|_11:114 blasting: T0112 gi|2921435|gb|AAC04784.1|_130:233 blasting: T0112 gi|7477742|pir||G70796_1:224 blasting: T0112 gi|7477742|pir||G70796_302:382 blasting: T0112 gi|7430941|pir||T05624_38:279 blasting: T0112 gi|2961285|emb|CAA76419.1|_33:160 blasting: T0112 gi|2961356|emb|CAA18114.1|_19:367 blasting: T0112 gi|7427649|pir||C70418_18:290 blasting: T0112 gi|3913185|sp|O64969|CADH_EUCGL_35:231 blasting: T0112 gi|7430973|pir||T05166_86:259 blasting: T0112 gi|7430973|pir||T05166_11:85 blasting: T0112 gi|3088900|gb|AAC14932.1|_1:73 blasting: T0112 gi|3088900|gb|AAC14932.1|_153:226 blasting: T0112 gi|3088910|gb|AAC14937.1|_1:73 blasting: T0112 gi|3088910|gb|AAC14937.1|_153:226 blasting: T0112 gi|3088914|gb|AAC14939.1|_1:73 blasting: T0112 gi|3088914|gb|AAC14939.1|_153:226 blasting: T0112 gi|3088916|gb|AAC14940.1|_1:73 blasting: T0112 gi|3088916|gb|AAC14940.1|_153:226 blasting: T0112 gi|3088918|gb|AAC14941.1|_1:73 blasting: T0112 gi|3088918|gb|AAC14941.1|_153:226 blasting: T0112 gi|3088920|gb|AAC14942.1|_1:73 blasting: T0112 gi|3088920|gb|AAC14942.1|_137:204 blasting: T0112 gi|3088924|gb|AAC14944.1|_1:73 blasting: T0112 gi|3088924|gb|AAC14944.1|_120:177 blasting: T0112 gi|3088926|gb|AAC14945.1|_1:73 blasting: T0112 gi|3088926|gb|AAC14945.1|_137:204 blasting: T0112 gi|3088928|gb|AAC14946.1|_1:73 blasting: T0112 gi|3088928|gb|AAC14946.1|_120:204 blasting: T0112 gi|3088930|gb|AAC14947.1|_1:73 blasting: T0112 gi|3088930|gb|AAC14947.1|_153:226 blasting: T0112 gi|3088934|gb|AAC14949.1|_1:73 blasting: T0112 gi|3088934|gb|AAC14949.1|_153:226 blasting: T0112 gi|3088936|gb|AAC14950.1|_1:73 blasting: T0112 gi|3088936|gb|AAC14950.1|_108:226 blasting: T0112 gi|3088938|gb|AAC14951.1|_1:73 blasting: T0112 gi|3088938|gb|AAC14951.1|_153:226 blasting: T0112 gi|3088940|gb|AAC14952.1|_1:73 blasting: T0112 gi|3088940|gb|AAC14952.1|_153:226 blasting: T0112 gi|3088942|gb|AAC14953.1|_1:71 blasting: T0112 gi|3088942|gb|AAC14953.1|_153:226 blasting: T0112 gi|3088976|gb|AAC14970.1|_1:73 blasting: T0112 gi|3088976|gb|AAC14970.1|_153:226 blasting: T0112 gi|3088982|gb|AAC14973.1|_1:73 blasting: T0112 gi|3088982|gb|AAC14973.1|_153:226 blasting: T0112 gi|3088988|gb|AAC14976.1|_1:73 blasting: T0112 gi|3088988|gb|AAC14976.1|_153:226 blasting: T0112 gi|3088992|gb|AAC14978.1|_1:73 blasting: T0112 gi|3088992|gb|AAC14978.1|_137:226 blasting: T0112 gi|3088996|gb|AAC14980.1|_1:73 blasting: T0112 gi|3088996|gb|AAC14980.1|_153:226 blasting: T0112 gi|3089004|gb|AAC14984.1|_1:73 blasting: T0112 gi|3089004|gb|AAC14984.1|_153:226 blasting: T0112 gi|3089006|gb|AAC14985.1|_1:73 blasting: T0112 gi|3089006|gb|AAC14985.1|_153:226 blasting: T0112 gi|3089010|gb|AAC14987.1|_1:73 blasting: T0112 gi|3089010|gb|AAC14987.1|_153:226 blasting: T0112 gi|3089016|gb|AAC14990.1|_1:73 blasting: T0112 gi|3089016|gb|AAC14990.1|_153:226 blasting: T0112 gi|3089018|gb|AAC14991.1|_1:73 blasting: T0112 gi|3089018|gb|AAC14991.1|_153:226 blasting: T0112 gi|3089022|gb|AAC14993.1|_1:73 blasting: T0112 gi|3089022|gb|AAC14993.1|_153:226 blasting: T0112 gi|3089030|gb|AAC14997.1|_1:73 blasting: T0112 gi|3089030|gb|AAC14997.1|_153:226 blasting: T0112 gi|7430938|pir||T02767_35:349 blasting: T0112 gi|3114326|pdb|1AXE|A_11:157 blasting: T0112 gi|3114326|pdb|1AXE|A_183:363 blasting: T0112 gi|3114328|pdb|1AXG|A_11:157 blasting: T0112 gi|3114328|pdb|1AXG|A_183:363 blasting: T0112 gi|3114658|gb|AAC15839.1|_6:106 blasting: T0112 gi|3114658|gb|AAC15839.1|_139:360 blasting: T0112 gi|3114701|gb|AAC38656.1|_187:401 blasting: T0112 gi|3121727|sp|P80572|ADHX_PEA_11:112 blasting: T0112 gi|7430953|pir||H71110_24:344 blasting: T0112 gi|3264834|gb|AAC24597.1|_5:350 blasting: T0112 gi|3283368|gb|AAC61854.1|_37:288 blasting: T0112 gi|3293547|gb|AAC25771.1|_94:241 blasting: T0112 gi|3293547|gb|AAC25771.1|_20:87 blasting: T0112 gi|3318996|pdb|1A71|A_11:157 blasting: T0112 gi|3318996|pdb|1A71|A_183:363 blasting: T0112 gi|3341513|emb|CAA13177.1|_35:235 blasting: T0112 gi|3372645|gb|AAC31166.1|_35:242 blasting: T0112 gi|3378273|gb|AAD03856.1|_2:107 blasting: T0112 gi|3378273|gb|AAD03856.1|_139:290 blasting: T0112 gi|3401952|dbj|BAA32135.1|_21:278 blasting: T0112 gi|3420019|gb|AAC34997.1|_22:115 blasting: T0112 gi|3420019|gb|AAC34997.1|_195:367 blasting: T0112 gi|3451284|emb|CAA05095.1|_35:242 blasting: T0112 gi|3511118|gb|AAC33714.1|_16:107 blasting: T0112 gi|3511118|gb|AAC33714.1|_145:269 blasting: T0112 gi|3511120|gb|AAC33715.1|_7:107 blasting: T0112 gi|3511120|gb|AAC33715.1|_153:266 blasting: T0112 gi|3550429|gb|AAC34704.1|_1:65 blasting: T0112 gi|3550429|gb|AAC34704.1|_147:214 blasting: T0112 gi|3550438|gb|AAC34707.1|_1:65 blasting: T0112 gi|3550438|gb|AAC34707.1|_147:214 blasting: T0112 gi|3550440|gb|AAC34708.1|_1:65 blasting: T0112 gi|3550440|gb|AAC34708.1|_147:214 blasting: T0112 gi|7484712|pir||T09831_1:65 blasting: T0112 gi|7484712|pir||T09831_147:214 blasting: T0112 gi|3551969|gb|AAC34865.1|_14:64 blasting: T0112 gi|3551969|gb|AAC34865.1|_146:213 blasting: T0112 gi|3551973|gb|AAC34867.1|_14:64 blasting: T0112 gi|3551973|gb|AAC34867.1|_146:213 blasting: T0112 gi|3551983|gb|AAC34872.1|_1:65 blasting: T0112 gi|3551983|gb|AAC34872.1|_147:214 blasting: T0112 gi|3551991|gb|AAC34876.1|_1:65 blasting: T0112 gi|3551991|gb|AAC34876.1|_147:214 blasting: T0112 gi|3551995|gb|AAC34878.1|_14:64 blasting: T0112 gi|3551995|gb|AAC34878.1|_146:213 blasting: T0112 gi|3551999|gb|AAC34880.1|_1:65 blasting: T0112 gi|3551999|gb|AAC34880.1|_147:214 blasting: T0112 gi|3552003|gb|AAC34882.1|_7:57 blasting: T0112 gi|3552003|gb|AAC34882.1|_139:206 blasting: T0112 gi|3599999|gb|AAC35913.1|_12:113 blasting: T0112 gi|3599999|gb|AAC35913.1|_147:377 blasting: T0112 gi|3603401|gb|AAC35846.1|_34:291 blasting: T0112 gi|3676721|gb|AAD11983.1|_8:95 blasting: T0112 gi|3694835|gb|AAC62469.1|_17:109 blasting: T0112 gi|3694835|gb|AAC62469.1|_191:363 blasting: T0112 gi|3724165|emb|CAA12244.1|_24:342 blasting: T0112 gi|7493749|pir||T40264_101:239 blasting: T0112 gi|7493749|pir||T40264_23:112 blasting: T0112 gi|3786221|emb|CAA09918.1|_28:363 blasting: T0112 gi|7492884|pir||T40981_93:324 blasting: T0112 gi|7492884|pir||T40981_17:86 blasting: T0112 gi|7490088|pir||T40962_8:298 blasting: T0112 gi|7492604|pir||T40965_25:116 blasting: T0112 gi|7492604|pir||T40965_192:378 blasting: T0112 gi|7492995|pir||T39670_1:355 blasting: T0112 gi|7490087|pir||T39671_15:330 blasting: T0112 gi|7493761|pir||T18230_9:319 blasting: T0112 gi|3869173|dbj|BAA34382.1|_95:312 blasting: T0112 gi|6225005|sp|O45687|ADH2_CAEEL_1:351 blasting: T0112 gi|6226808|sp|Q17334|ADH1_CAEEL_21:313 blasting: T0112 gi|7506256|pir||T23889_1:347 blasting: T0112 gi|7506257|pir||T23890_1:347 blasting: T0112 gi|7511344|pir||T28027_1:298 blasting: T0112 gi|3915692|sp|P80094|FADH_AMYME_23:302 blasting: T0112 gi|3928521|dbj|BAA34676.1|_13:106 blasting: T0112 gi|3928521|dbj|BAA34676.1|_146:354 blasting: T0112 gi|3928523|dbj|BAA34677.1|_3:106 blasting: T0112 gi|3928523|dbj|BAA34677.1|_135:354 blasting: T0112 gi|3928525|dbj|BAA34678.1|_13:106 blasting: T0112 gi|3928525|dbj|BAA34678.1|_146:354 blasting: T0112 gi|3928527|dbj|BAA34679.1|_13:106 blasting: T0112 gi|3928527|dbj|BAA34679.1|_146:354 blasting: T0112 gi|3928529|dbj|BAA34680.1|_15:108 blasting: T0112 gi|3928529|dbj|BAA34680.1|_148:356 blasting: T0112 gi|3928531|dbj|BAA34681.1|_18:108 blasting: T0112 gi|3928531|dbj|BAA34681.1|_148:356 blasting: T0112 gi|3928533|dbj|BAA34682.1|_15:108 blasting: T0112 gi|3928533|dbj|BAA34682.1|_172:356 blasting: T0112 gi|3928535|dbj|BAA34683.1|_14:107 blasting: T0112 gi|3928535|dbj|BAA34683.1|_147:355 blasting: T0112 gi|3928537|dbj|BAA34684.1|_15:108 blasting: T0112 gi|3928537|dbj|BAA34684.1|_148:356 blasting: T0112 gi|3928539|dbj|BAA34685.1|_15:108 blasting: T0112 gi|3928539|dbj|BAA34685.1|_148:356 blasting: T0112 gi|3928541|dbj|BAA34686.1|_2:95 blasting: T0112 gi|3928541|dbj|BAA34686.1|_135:343 blasting: T0112 gi|4001745|dbj|BAA35108.1|_15:272 blasting: T0112 gi|4039115|gb|AAC97495.1|_22:115 blasting: T0112 gi|4039115|gb|AAC97495.1|_195:341 blasting: T0112 gi|4091068|gb|AAC98957.1|_12:112 blasting: T0112 gi|4091068|gb|AAC98957.1|_178:374 blasting: T0112 gi|4091070|gb|AAC98958.1|_12:112 blasting: T0112 gi|4091070|gb|AAC98958.1|_160:374 blasting: T0112 gi|4091072|gb|AAC98959.1|_12:112 blasting: T0112 gi|4091072|gb|AAC98959.1|_178:374 blasting: T0112 gi|4091074|gb|AAC98960.1|_12:112 blasting: T0112 gi|4091074|gb|AAC98960.1|_178:374 blasting: T0112 gi|4097522|gb|AAD10327.1|_32:286 blasting: T0112 gi|4097831|gb|AAD10290.1|_101:269 blasting: T0112 gi|4097831|gb|AAD10290.1|_30:93 blasting: T0112 gi|4100628|gb|AAD00902.1|_1:347 blasting: T0112 gi|4100630|gb|AAD00903.1|_1:347 blasting: T0112 gi|4106364|gb|AAD02817.1|_1:352 blasting: T0112 gi|4138625|emb|CAA07791.1|_100:420 blasting: T0112 gi|4140598|gb|AAD04135.1|_14:64 blasting: T0112 gi|4140598|gb|AAD04135.1|_146:213 blasting: T0112 gi|4140600|gb|AAD04136.1|_12:62 blasting: T0112 gi|4140600|gb|AAD04136.1|_144:211 blasting: T0112 gi|4140622|gb|AAD04147.1|_14:64 blasting: T0112 gi|4140622|gb|AAD04147.1|_146:213 blasting: T0112 gi|7479216|pir||T35960_102:338 blasting: T0112 gi|7430945|pir||A71857_29:244 blasting: T0112 gi|7430946|pir||H71808_38:278 blasting: T0112 gi|7480432|pir||T35929_5:283 blasting: T0112 gi|4191746|gb|AAD09950.1|_12:112 blasting: T0112 gi|4191746|gb|AAD09950.1|_184:372 blasting: T0112 gi|7498226|pir||T33939_22:348 blasting: T0112 gi|4378174|gb|AAD19419.1|_16:86 blasting: T0112 gi|4378174|gb|AAD19419.1|_93:325 blasting: T0112 gi|4417268|gb|AAD20393.1|_28:284 blasting: T0112 gi|4417281|gb|AAD20406.1|_28:283 blasting: T0112 gi|7430954|pir||T05625_33:284 blasting: T0112 gi|4512377|dbj|BAA75341.1|_16:340 blasting: T0112 gi|4512379|dbj|BAA75343.1|_6:261 blasting: T0112 gi|4519539|dbj|BAA36481.2|_27:370 blasting: T0112 gi|7481706|pir||T35422_187:351 blasting: T0112 gi|7481706|pir||T35422_23:105 blasting: T0112 gi|4566587|gb|AAD23401.1|AF110772_3_5:233 blasting: T0112 gi|7430944|pir||T08581_37:288 blasting: T0112 gi|4928745|gb|AAD33713.1|AF136458_1_1:65 blasting: T0112 gi|4928745|gb|AAD33713.1|AF136458_1_147:214 blasting: T0112 gi|4929532|gb|AAD34026.1|AF150928_4_15:222 blasting: T0112 gi|7462051|pir||B72395_16:216 blasting: T0112 gi|7462050|pir||B72381_90:390 blasting: T0112 gi|7462050|pir||B72381_30:201 blasting: T0112 gi|7430961|pir||G72376_10:364 blasting: T0112 gi|5002379|gb|AAD37446.1|_12:112 blasting: T0112 gi|5002379|gb|AAD37446.1|_188:361 blasting: T0112 gi|5019754|gb|AAD37848.1|AF112883_4_13:104 blasting: T0112 gi|5019754|gb|AAD37848.1|AF112883_4_153:353 blasting: T0112 gi|5042408|gb|AAD38247.1|AC006193_3_22:114 blasting: T0112 gi|5042408|gb|AAD38247.1|AC006193_3_200:373 blasting: T0112 gi|7430976|pir||E72597_9:253 blasting: T0112 gi|7430976|pir||E72597_56:332 blasting: T0112 gi|7520892|pir||F72637_38:280 blasting: T0112 gi|7520892|pir||F72637_2:44 blasting: T0112 gi|7430977|pir||C72533_18:348 blasting: T0112 gi|7480589|pir||T36262_99:195 blasting: T0112 gi|7480589|pir||T36262_18:90 blasting: T0112 gi|7430959|pir||T10203_25:93 blasting: T0112 gi|7430959|pir||T10203_103:313 blasting: T0112 gi|7480716|pir||T35024_1:261 blasting: T0112 gi|7480716|pir||T35024_302:394 blasting: T0112 gi|7481709|pir||T36915_18:315 blasting: T0112 gi|7481707|pir||T36783_16:349 blasting: T0112 gi|7480430|pir||T36806_26:292 blasting: T0112 gi|7480430|pir||T36806_144:351 blasting: T0112 gi|7481230|pir||T36504_86:239 blasting: T0112 gi|7481230|pir||T36504_21:85 blasting: T0112 gi|7430975|pir||G75049_24:344 blasting: T0112 gi|7492576|pir||T39466_22:113 blasting: T0112 gi|7492576|pir||T39466_189:361 blasting: T0112 gi|5669093|gb|AAD46162.1|AF130307_1_15:106 blasting: T0112 gi|5669093|gb|AAD46162.1|AF130307_1_142:366 blasting: T0112 gi|5688849|dbj|BAA82700.1|_19:329 blasting: T0112 gi|5701906|emb|CAB52210.1|_7:219 blasting: T0112 gi|7481711|pir||T36961_15:343 blasting: T0112 gi|5758929|gb|AAD50898.1|AF169254_1_1:94 blasting: T0112 gi|5758929|gb|AAD50898.1|AF169254_1_109:253 blasting: T0112 gi|7480431|pir||T36399_4:221 blasting: T0112 gi|7480433|pir||T37030_13:306 blasting: T0112 gi|5802617|gb|AAD51737.1|AF175271_1_10:338 blasting: T0112 gi|5802619|gb|AAD51738.1|AF175272_1_28:340 blasting: T0112 gi|5802621|gb|AAD51739.1|AF175273_1_10:340 blasting: T0112 gi|5902740|sp|P81600|ADHH_GADMO_21:112 blasting: T0112 gi|5902740|sp|P81600|ADHH_GADMO_177:361 blasting: T0112 gi|5902741|sp|P81601|ADHL_GADMO_21:112 blasting: T0112 gi|5902741|sp|P81601|ADHL_GADMO_148:361 blasting: T0112 gi|5915678|sp|P41682|ADH7_RAT_12:118 blasting: T0112 gi|5915678|sp|P41682|ADH7_RAT_183:360 blasting: T0112 gi|6009995|emb|CAB57202.1|_132:268 blasting: T0112 gi|6009995|emb|CAB57202.1|_319:353 blasting: T0112 gi|6009995|emb|CAB57202.1|_90:134 blasting: T0112 gi|6015712|emb|CAB57539.1|_9:255 blasting: T0112 gi|6017987|gb|AAF01700.1|AF182116_1_1:65 blasting: T0112 gi|6017987|gb|AAF01700.1|AF182116_1_147:209 blasting: T0112 gi|6017990|gb|AAF01703.1|AF182119_1_1:65 blasting: T0112 gi|6017990|gb|AAF01703.1|AF182119_1_147:209 blasting: T0112 gi|6017994|gb|AAF01707.1|AF182123_1_1:65 blasting: T0112 gi|6017994|gb|AAF01707.1|AF182123_1_147:198 blasting: T0112 gi|6017996|gb|AAF01709.1|AF182125_1_1:65 blasting: T0112 gi|6017996|gb|AAF01709.1|AF182125_1_147:209 blasting: T0112 gi|6017997|gb|AAF01710.1|AF182126_1_1:65 blasting: T0112 gi|6017997|gb|AAF01710.1|AF182126_1_147:214 blasting: T0112 gi|6017998|gb|AAF01711.1|AF182127_1_14:64 blasting: T0112 gi|6017998|gb|AAF01711.1|AF182127_1_146:208 blasting: T0112 gi|6017999|gb|AAF01712.1|AF182128_1_14:64 blasting: T0112 gi|6017999|gb|AAF01712.1|AF182128_1_146:213 blasting: T0112 gi|6018000|gb|AAF01713.1|AF182129_1_14:64 blasting: T0112 gi|6018000|gb|AAF01713.1|AF182129_1_146:208 blasting: T0112 gi|6018001|gb|AAF01714.1|AF182130_1_1:65 blasting: T0112 gi|6018001|gb|AAF01714.1|AF182130_1_147:214 blasting: T0112 gi|6018002|gb|AAF01715.1|AF182131_1_14:64 blasting: T0112 gi|6018002|gb|AAF01715.1|AF182131_1_146:208 blasting: T0112 gi|6018003|gb|AAF01716.1|AF182132_1_1:65 blasting: T0112 gi|6018003|gb|AAF01716.1|AF182132_1_147:214 blasting: T0112 gi|6018004|gb|AAF01717.1|AF182133_1_1:65 blasting: T0112 gi|6018004|gb|AAF01717.1|AF182133_1_147:214 blasting: T0112 gi|6018005|gb|AAF01718.1|AF182134_1_1:65 blasting: T0112 gi|6018005|gb|AAF01718.1|AF182134_1_107:214 blasting: T0112 gi|6018006|gb|AAF01719.1|AF182135_1_1:65 blasting: T0112 gi|6018006|gb|AAF01719.1|AF182135_1_147:214 blasting: T0112 gi|6018008|gb|AAF01721.1|AF182137_1_1:65 blasting: T0112 gi|6018008|gb|AAF01721.1|AF182137_1_147:214 blasting: T0112 gi|6018009|gb|AAF01722.1|AF182138_1_1:65 blasting: T0112 gi|6018009|gb|AAF01722.1|AF182138_1_147:214 blasting: T0112 gi|6018021|gb|AAF01734.1|AF182150_1_14:64 blasting: T0112 gi|6018021|gb|AAF01734.1|AF182150_1_146:213 blasting: T0112 gi|6066457|emb|CAB58398.1|_30:271 blasting: T0112 gi|6137110|gb|AAF04337.1|AF126215_1_89:201 blasting: T0112 gi|6137110|gb|AAF04337.1|AF126215_1_2:42 blasting: T0112 gi|6137446|pdb|1D1T|A_11:117 blasting: T0112 gi|6137446|pdb|1D1T|A_158:359 blasting: T0112 gi|6166483|gb|AAF04851.1|AF195796_1_22:116 blasting: T0112 gi|6166483|gb|AAF04851.1|AF195796_1_196:366 blasting: T0112 gi|6434715|emb|CAB61162.1|_5:335 blasting: T0112 gi|7473588|pir||C75441_155:268 blasting: T0112 gi|7473588|pir||C75441_78:153 blasting: T0112 gi|7473972|pir||A75371_42:350 blasting: T0112 gi|7471094|pir||C75293_23:229 blasting: T0112 gi|7471094|pir||C75293_335:431 blasting: T0112 gi|7471093|pir||A75593_17:104 blasting: T0112 gi|7471093|pir||A75593_138:266 blasting: T0112 gi|7471093|pir||A75593_303:389 blasting: T0112 gi|7473589|pir||D75578_86:335 blasting: T0112 gi|7473589|pir||D75578_27:102 blasting: T0112 gi|6469316|emb|CAB61765.1|_22:115 blasting: T0112 gi|6469464|emb|CAB61801.1|_5:337 blasting: T0112 gi|6498265|dbj|BAA87717.1|_106:240 blasting: T0112 gi|6498265|dbj|BAA87717.1|_16:90 blasting: T0112 gi|6562803|emb|CAB62734.1|_22:332 blasting: T0112 gi|6563402|gb|AAF17283.1|_3:301 blasting: T0112 gi|6587844|gb|AAF18533.1|AC006551_19_162:382 blasting: T0112 gi|6587844|gb|AAF18533.1|AC006551_19_16:122 blasting: T0112 gi|6587845|gb|AAF18534.1|AC006551_20_18:234 blasting: T0112 gi|6634495|emb|CAB64351.1|_6:107 blasting: T0112 gi|6634495|emb|CAB64351.1|_155:356 blasting: T0112 gi|6648160|gb|AAF21160.1|AC010926_12_36:285 blasting: T0112 gi|6684341|gb|AAF23523.1|AF110425_1_22:115 blasting: T0112 gi|6684341|gb|AAF23523.1|AF110425_1_155:363 blasting: T0112 gi|6684342|gb|AAF23524.1|AF110426_1_22:115 blasting: T0112 gi|6684342|gb|AAF23524.1|AF110426_1_155:363 blasting: T0112 gi|6684343|gb|AAF23525.1|AF110427_1_22:115 blasting: T0112 gi|6684343|gb|AAF23525.1|AF110427_1_155:363 blasting: T0112 gi|6684344|gb|AAF23526.1|AF110428_1_22:115 blasting: T0112 gi|6684344|gb|AAF23526.1|AF110428_1_155:363 blasting: T0112 gi|6684345|gb|AAF23527.1|AF110429_1_22:115 blasting: T0112 gi|6684345|gb|AAF23527.1|AF110429_1_155:363 blasting: T0112 gi|6684346|gb|AAF23528.1|AF110430_1_22:115 blasting: T0112 gi|6684346|gb|AAF23528.1|AF110430_1_155:363 blasting: T0112 gi|6684347|gb|AAF23529.1|AF110431_1_22:115 blasting: T0112 gi|6684347|gb|AAF23529.1|AF110431_1_155:371 blasting: T0112 gi|6684348|gb|AAF23530.1|AF110432_1_22:115 blasting: T0112 gi|6684348|gb|AAF23530.1|AF110432_1_155:363 blasting: T0112 gi|6684350|gb|AAF23532.1|AF110434_1_22:115 blasting: T0112 gi|6684350|gb|AAF23532.1|AF110434_1_155:363 blasting: T0112 gi|6684351|gb|AAF23533.1|AF110435_1_22:115 blasting: T0112 gi|6684351|gb|AAF23533.1|AF110435_1_155:363 blasting: T0112 gi|6684352|gb|AAF23534.1|AF110436_1_29:115 blasting: T0112 gi|6684352|gb|AAF23534.1|AF110436_1_155:363 blasting: T0112 gi|6684353|gb|AAF23535.1|AF110437_1_22:115 blasting: T0112 gi|6684353|gb|AAF23535.1|AF110437_1_155:367 blasting: T0112 gi|6684354|gb|AAF23536.1|AF110438_1_22:115 blasting: T0112 gi|6684354|gb|AAF23536.1|AF110438_1_155:363 blasting: T0112 gi|6684355|gb|AAF23537.1|AF110439_1_22:115 blasting: T0112 gi|6684355|gb|AAF23537.1|AF110439_1_155:367 blasting: T0112 gi|6684356|gb|AAF23538.1|AF110440_1_22:115 blasting: T0112 gi|6684356|gb|AAF23538.1|AF110440_1_155:376 blasting: T0112 gi|6684357|gb|AAF23539.1|AF110441_1_22:115 blasting: T0112 gi|6684357|gb|AAF23539.1|AF110441_1_155:363 blasting: T0112 gi|6684358|gb|AAF23540.1|AF110442_1_22:115 blasting: T0112 gi|6684358|gb|AAF23540.1|AF110442_1_155:363 blasting: T0112 gi|6684359|gb|AAF23541.1|AF110443_1_22:115 blasting: T0112 gi|6684359|gb|AAF23541.1|AF110443_1_155:363 blasting: T0112 gi|6684360|gb|AAF23542.1|AF110444_1_12:115 blasting: T0112 gi|6684360|gb|AAF23542.1|AF110444_1_155:363 blasting: T0112 gi|6684361|gb|AAF23543.1|AF110445_1_22:115 blasting: T0112 gi|6684361|gb|AAF23543.1|AF110445_1_155:363 blasting: T0112 gi|6684362|gb|AAF23544.1|AF110446_1_22:115 blasting: T0112 gi|6684362|gb|AAF23544.1|AF110446_1_155:367 blasting: T0112 gi|6684363|gb|AAF23545.1|AF110447_1_22:115 blasting: T0112 gi|6684363|gb|AAF23545.1|AF110447_1_155:363 blasting: T0112 gi|6684364|gb|AAF23546.1|AF110448_1_22:115 blasting: T0112 gi|6684364|gb|AAF23546.1|AF110448_1_155:363 blasting: T0112 gi|6684365|gb|AAF23547.1|AF110449_1_22:115 blasting: T0112 gi|6684365|gb|AAF23547.1|AF110449_1_195:363 blasting: T0112 gi|6684366|gb|AAF23548.1|AF110450_1_22:115 blasting: T0112 gi|6684366|gb|AAF23548.1|AF110450_1_155:363 blasting: T0112 gi|6684367|gb|AAF23549.1|AF110451_1_22:115 blasting: T0112 gi|6684367|gb|AAF23549.1|AF110451_1_155:363 blasting: T0112 gi|6684368|gb|AAF23550.1|AF110452_1_22:115 blasting: T0112 gi|6684368|gb|AAF23550.1|AF110452_1_155:363 blasting: T0112 gi|6684369|gb|AAF23551.1|AF110453_1_22:115 blasting: T0112 gi|6684369|gb|AAF23551.1|AF110453_1_155:363 blasting: T0112 gi|6684370|gb|AAF23552.1|AF110454_1_22:115 blasting: T0112 gi|6684370|gb|AAF23552.1|AF110454_1_155:367 blasting: T0112 gi|6684371|gb|AAF23553.1|AF110455_1_22:115 blasting: T0112 gi|6684371|gb|AAF23553.1|AF110455_1_155:363 blasting: T0112 gi|6684373|gb|AAF23555.1|AF110457_1_22:115 blasting: T0112 gi|6684373|gb|AAF23555.1|AF110457_1_155:363 blasting: T0112 gi|6684374|gb|AAF23556.1|AF110458_1_22:115 blasting: T0112 gi|6684374|gb|AAF23556.1|AF110458_1_155:363 blasting: T0112 gi|6690417|gb|AAF24128.1|AF129168_1_8:193 blasting: T0112 gi|6690417|gb|AAF24128.1|AF129168_1_318:340 blasting: T0112 gi|6690728|gb|AAF24296.1|_5:93 blasting: T0112 gi|6690728|gb|AAF24296.1|_211:315 blasting: T0112 gi|6730482|pdb|1QLH|A_11:157 blasting: T0112 gi|6730482|pdb|1QLH|A_183:363 blasting: T0112 gi|6855355|emb|CAB71246.1|_4:337 blasting: T0112 gi|6911167|gb|AAF31411.1|AF201888_1_9:59 blasting: T0112 gi|6911167|gb|AAF31411.1|AF201888_1_141:203 blasting: T0112 gi|6967083|emb|CAB72916.1|_13:106 blasting: T0112 gi|6967083|emb|CAB72916.1|_146:354 blasting: T0112 gi|6967127|emb|CAB72922.1|_13:106 blasting: T0112 gi|6967127|emb|CAB72922.1|_146:210 blasting: T0112 gi|6967133|emb|CAB72925.1|_13:106 blasting: T0112 gi|6967133|emb|CAB72925.1|_146:237 blasting: T0112 gi|6967135|emb|CAB72926.1|_10:103 blasting: T0112 gi|6967135|emb|CAB72926.1|_143:351 blasting: T0112 gi|6968967|emb|CAB73964.1|_37:278 blasting: T0112 gi|6979319|gb|AAF34412.1|AF172282_1_22:115 blasting: T0112 gi|6979319|gb|AAF34412.1|AF172282_1_195:367 blasting: T0112 gi|6979321|gb|AAF34414.1|AF172282_3_22:115 blasting: T0112 gi|6979321|gb|AAF34414.1|AF172282_3_195:367 blasting: T0112 gi|7158297|gb|AAF37387.1|_7:58 blasting: T0112 gi|7158297|gb|AAF37387.1|_138:196 blasting: T0112 gi|7158299|gb|AAF37388.1|_7:58 blasting: T0112 gi|7158299|gb|AAF37388.1|_138:196 blasting: T0112 gi|7158301|gb|AAF37389.1|_7:58 blasting: T0112 gi|7158301|gb|AAF37389.1|_138:196 blasting: T0112 gi|7158313|gb|AAF37395.1|_7:58 blasting: T0112 gi|7158313|gb|AAF37395.1|_138:196 blasting: T0112 gi|7158315|gb|AAF37396.1|_7:58 blasting: T0112 gi|7158315|gb|AAF37396.1|_138:196 blasting: T0112 gi|7158317|gb|AAF37397.1|_7:58 blasting: T0112 gi|7158317|gb|AAF37397.1|_138:196 blasting: T0112 gi|7158319|gb|AAF37398.1|_7:58 blasting: T0112 gi|7158319|gb|AAF37398.1|_138:196 blasting: T0112 gi|7158333|gb|AAF37405.1|_7:58 blasting: T0112 gi|7158333|gb|AAF37405.1|_138:196 blasting: T0112 gi|7158335|gb|AAF37406.1|_7:58 blasting: T0112 gi|7158335|gb|AAF37406.1|_138:196 blasting: T0112 gi|7158339|gb|AAF37408.1|_7:58 blasting: T0112 gi|7158339|gb|AAF37408.1|_138:196 blasting: T0112 gi|7158341|gb|AAF37409.1|_7:58 blasting: T0112 gi|7158341|gb|AAF37409.1|_138:196 blasting: T0112 gi|7158343|gb|AAF37410.1|_7:58 blasting: T0112 gi|7158343|gb|AAF37410.1|_138:196 blasting: T0112 gi|7158345|gb|AAF37411.1|_7:58 blasting: T0112 gi|7158345|gb|AAF37411.1|_138:196 blasting: T0112 gi|7158347|gb|AAF37412.1|_7:58 blasting: T0112 gi|7158347|gb|AAF37412.1|_138:196 blasting: T0112 gi|7158349|gb|AAF37413.1|_7:58 blasting: T0112 gi|7158349|gb|AAF37413.1|_138:196 blasting: T0112 gi|7158353|gb|AAF37415.1|_7:58 blasting: T0112 gi|7158353|gb|AAF37415.1|_138:196 blasting: T0112 gi|7158355|gb|AAF37416.1|_7:58 blasting: T0112 gi|7158355|gb|AAF37416.1|_138:196 blasting: T0112 gi|7158357|gb|AAF37417.1|_7:58 blasting: T0112 gi|7158357|gb|AAF37417.1|_138:196 blasting: T0112 gi|7158359|gb|AAF37418.1|_7:58 blasting: T0112 gi|7158359|gb|AAF37418.1|_138:196 blasting: T0112 gi|7158361|gb|AAF37419.1|_7:58 blasting: T0112 gi|7158361|gb|AAF37419.1|_138:196 blasting: T0112 gi|7158363|gb|AAF37420.1|_7:58 blasting: T0112 gi|7158363|gb|AAF37420.1|_138:196 blasting: T0112 gi|7159002|gb|AAF37593.1|AF126229_1_89:201 blasting: T0112 gi|7159002|gb|AAF37593.1|AF126229_1_2:42 blasting: T0112 gi|7159010|gb|AAF37597.1|AF126233_1_89:201 blasting: T0112 gi|7159010|gb|AAF37597.1|AF126233_1_2:42 blasting: T0112 gi|7188489|gb|AAF37766.1|_7:58 blasting: T0112 gi|7188489|gb|AAF37766.1|_138:189 blasting: T0112 gi|7188491|gb|AAF37767.1|_7:58 blasting: T0112 gi|7188491|gb|AAF37767.1|_138:189 blasting: T0112 gi|7188493|gb|AAF37768.1|_7:58 blasting: T0112 gi|7188493|gb|AAF37768.1|_138:189 blasting: T0112 gi|7188505|gb|AAF37774.1|_7:58 blasting: T0112 gi|7188505|gb|AAF37774.1|_105:189 blasting: T0112 gi|7188507|gb|AAF37775.1|_7:58 blasting: T0112 gi|7188507|gb|AAF37775.1|_105:189 blasting: T0112 gi|7188509|gb|AAF37776.1|_7:58 blasting: T0112 gi|7188509|gb|AAF37776.1|_105:189 blasting: T0112 gi|7188511|gb|AAF37777.1|_7:58 blasting: T0112 gi|7188511|gb|AAF37777.1|_105:189 blasting: T0112 gi|7188513|gb|AAF37778.1|_7:58 blasting: T0112 gi|7188513|gb|AAF37778.1|_138:189 blasting: T0112 gi|7188515|gb|AAF37779.1|_7:58 blasting: T0112 gi|7188515|gb|AAF37779.1|_105:189 blasting: T0112 gi|7188526|gb|AAF37784.1|_7:58 blasting: T0112 gi|7188526|gb|AAF37784.1|_105:189 blasting: T0112 gi|7188528|gb|AAF37785.1|_7:58 blasting: T0112 gi|7188528|gb|AAF37785.1|_105:189 blasting: T0112 gi|7188530|gb|AAF37786.1|_7:58 blasting: T0112 gi|7188530|gb|AAF37786.1|_105:189 blasting: T0112 gi|7188532|gb|AAF37787.1|_7:58 blasting: T0112 gi|7188532|gb|AAF37787.1|_105:189 blasting: T0112 gi|7188538|gb|AAF37790.1|_7:58 blasting: T0112 gi|7188538|gb|AAF37790.1|_105:189 blasting: T0112 gi|7188540|gb|AAF37791.1|_7:58 blasting: T0112 gi|7188540|gb|AAF37791.1|_105:196 blasting: T0112 gi|7188542|gb|AAF37792.1|_7:58 blasting: T0112 gi|7188542|gb|AAF37792.1|_105:196 blasting: T0112 gi|7188544|gb|AAF37793.1|_7:58 blasting: T0112 gi|7188544|gb|AAF37793.1|_105:189 blasting: T0112 gi|7188546|gb|AAF37794.1|_7:58 blasting: T0112 gi|7188546|gb|AAF37794.1|_105:189 blasting: T0112 gi|7188548|gb|AAF37795.1|_7:58 blasting: T0112 gi|7188548|gb|AAF37795.1|_105:189 blasting: T0112 gi|7188550|gb|AAF37796.1|_7:58 blasting: T0112 gi|7188550|gb|AAF37796.1|_105:189 blasting: T0112 gi|7188552|gb|AAF37797.1|_7:58 blasting: T0112 gi|7188552|gb|AAF37797.1|_105:196 blasting: T0112 gi|7188554|gb|AAF37798.1|_7:58 blasting: T0112 gi|7188554|gb|AAF37798.1|_105:196 blasting: T0112 gi|7225772|gb|AAF40975.1|_3:264 blasting: T0112 gi|7225834|gb|AAF41031.1|_3:351 blasting: T0112 gi|7226545|gb|AAF41679.1|_14:115 blasting: T0112 gi|7226545|gb|AAF41679.1|_151:364 blasting: T0112 gi|7226634|gb|AAF41759.1|_1:343 blasting: T0112 gi|7239226|gb|AAF43140.1|AF217957_1_35:276 blasting: T0112 gi|7248739|gb|AAF43644.1|AF218308_1_12:84 blasting: T0112 gi|7248741|gb|AAF43645.1|AF218309_1_35:360 blasting: T0112 gi|7264740|gb|AAF44335.1|AF195866_1_23:116 blasting: T0112 gi|7264740|gb|AAF44335.1|AF195866_1_180:364 blasting: T0112 gi|7288599|gb|AAF45188.1|AF226632_1_1:94 blasting: T0112 gi|7288599|gb|AAF45188.1|AF226632_1_134:253 blasting: T0112 gi|7288601|gb|AAF45189.1|AF226633_1_1:94 blasting: T0112 gi|7288601|gb|AAF45189.1|AF226633_1_134:253 blasting: T0112 gi|7288603|gb|AAF45190.1|AF226634_1_1:94 blasting: T0112 gi|7288603|gb|AAF45190.1|AF226634_1_134:253 blasting: T0112 gi|7288605|gb|AAF45191.1|AF226635_1_1:94 blasting: T0112 gi|7288605|gb|AAF45191.1|AF226635_1_134:253 blasting: T0112 gi|7288607|gb|AAF45192.1|AF226636_1_1:94 blasting: T0112 gi|7288607|gb|AAF45192.1|AF226636_1_134:253 blasting: T0112 gi|7300579|gb|AAF55731.1|_817:1135 blasting: T0112 gi|7379448|emb|CAB84010.1|_1:262 blasting: T0112 gi|7379528|emb|CAB84091.1|_3:351 blasting: T0112 gi|7380254|emb|CAB84840.1|_39:247 blasting: T0112 gi|7388288|sp|Q52998|TDH_RHIME_17:342 blasting: T0112 gi|7416785|dbj|BAA94034.1|_7:93 blasting: T0112 gi|7416785|dbj|BAA94034.1|_210:300 blasting: T0112 gi|7416819|dbj|BAA94068.1|_108:323 blasting: T0112 gi|7416819|dbj|BAA94068.1|_21:87 blasting: T0112 gi|7416846|dbj|BAA94084.1|_20:366 blasting: T0112 gi|7430935|pir||S72477_34:282 blasting: T0112 gi|7594524|emb|CAB88049.1|_101:337 blasting: T0112 gi|7594524|emb|CAB88049.1|_69:96 blasting: T0112 gi|7705214|gb|AAB33480.2|_19:167 blasting: T0112 gi|7705214|gb|AAB33480.2|_169:372 blasting: T0112 gi|7705215|gb|AAB33481.2|_21:122 blasting: T0112 gi|7705215|gb|AAB33481.2|_171:374 blasting: T0112 gi|7800883|emb|CAB91241.1|_25:342 blasting: T0112 gi|7801308|emb|CAB91176.1|_58:144 blasting: T0112 gi|7801308|emb|CAB91176.1|_188:367 blasting: T0112 gi|7801308|emb|CAB91176.1|_233:417 blasting: T0112 gi|7899376|emb|CAB91781.1|_168:327 blasting: T0112 gi|7899376|emb|CAB91781.1|_21:109 blasting: T0112 gi|8096347|dbj|BAA95897.1|_27:370 blasting: T0112 gi|8099340|gb|AAF72100.1|AF146691_1_1:217 blasting: T0112 gi|8132330|gb|AAF73254.1|AF154331_1_13:114 blasting: T0112 gi|8132330|gb|AAF73254.1|AF154331_1_152:362 blasting: T0112 gi|8132343|gb|AAF73255.1|AF156708_1_152:362 blasting: T0112 gi|8132343|gb|AAF73255.1|AF156708_1_13:114 blasting: T0112 gi|8248770|emb|CAB93031.1|_19:252 blasting: T0112 gi|8489794|gb|AAF75753.1|AF261760_1_36:326 blasting: make[1]: Leaving directory `/auto/projects/compbio/experiments/casp4/t112' make -k T0112.t2k.a2m.gz \ T0112.t2k.pa \ T0112.t2k.pa.html \ T0112.t2k.2d \ T0112.t2k.tree \ T0112.t2k_sorted.pa \ T0112.t2k.tree.ps \ T0112.t2k.tree-unroot.ps make[1]: Entering directory `/auto/projects/compbio/experiments/casp4/t112' /projects/compbio/experiments/models.97/scripts2k/target2k -out T0112.t2k \ -seed T0112.seq \ -all @@@@ chgrp protein /projects/compbio/tmp/target2k-eclipse-19696 @@@@ cp /projects/compbio/experiments/casp4/t112/T0112.seq m0.a2m @@@@ checkseq foo -alphabet protein -db m0.a2m > init.check SAM: checkseq v3.2 (June, 2000) compiled 07/06/00_15:43:49 # About to count sequences in /projects/compbio/data/nrp/nr /projects/compbio/experiments/models.97/scripts2k/target2k: E-value thresholds used are prefilter: 0.01, actual: 0.0001 prefilter: 1, actual: 0.0002 prefilter: 10, actual: 0.001 prefilter: 400, actual: 0.005 /projects/compbio/experiments/models.97/scripts2k/target2k: aweight_bits are 0.8, 0.7, 0.6, 0.5 /projects/compbio/experiments/models.97/scripts2k/target2k: db_size= 517398 reverse_diff= 4 /projects/compbio/experiments/models.97/scripts2k/target2k: blast_max_report= 20000 /projects/compbio/experiments/models.97/scripts2k/target2k: db=/projects/compbio/data/nrp/nr /projects/compbio/experiments/models.97/scripts2k/target2k: aweight_method=1 aweight_exponent=10 /projects/compbio/experiments/models.97/scripts2k/target2k: force_seed=1 constraints=1 /projects/compbio/experiments/models.97/scripts2k/target2k: jump_in=0.2 jump_out=1 fimstrength=1 fimtrans=-1 @@@@ blast-prefilter -out prefilter -seed m0.a2m -prefilter_thresholds 0.01,1,10,400 -db /projects/compbio/data/nrp/nr -blast_max_report 20000 @@@@ chgrp protein /projects/compbio/tmp/blast-prefilter-eclipse-19195 /projects/compbio/experiments/models.97/scripts2k/blast-prefilter: E-value thresholds used are For /projects/compbio/tmp/target2k-eclipse-19696/prefilter_1.fa, 0.01 For /projects/compbio/tmp/target2k-eclipse-19696/prefilter_2.fa, 1 For /projects/compbio/tmp/target2k-eclipse-19696/prefilter_3.fa, 10 For /projects/compbio/tmp/target2k-eclipse-19696/prefilter_4.fa, 400 /projects/compbio/experiments/models.97/scripts2k/blast-prefilter: db=/projects/compbio/data/nrp/nr @@@@ uniqueseq init -alignfile /projects/compbio/tmp/target2k-eclipse-19696/m0.a2m -a protein -a2mdots 0 SAM: uniqueseq v3.2 (June, 2000) compiled 07/06/00_15:43:59 Reading alignment file /projects/compbio/tmp/target2k-eclipse-19696/m0.a2m (1 sequences, 352 columns) as A2M alignment. Writing sequence output to init.a2m. No sequences have been dropped. @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 1.fasta E=400 V=20000 B=0 -gi > 1.fasta-blast.out Searched 517398 sequences # parsing wu-blastp output @@@@ rm -f 1.fasta < /dev/null @@@@ rm -f 1.fasta-blast.out < /dev/null # Extracting hits in FASTA format from /projects/compbio/data/nrp/nr @@@@ rm -rf /projects/compbio/tmp/blast-prefilter-eclipse-19195 < /dev/null @@@@ modelfromalign unused -alignfile m0.a2m \ -constraints_from_align 1 -constraints_out m0.cst SAM: modelfromalign v3.2 (June, 2000) compiled 07/06/00_15:43:15 Reading alignment file m0.a2m (1 sequences, 352 columns) as A2M alignment. # About to count sequences in m0.a2m # About to count sequences in prefilter_1.fa @@@@ modelfromalign tmp_1-a -alignfile m0.a2m \ -insert /projects/compbio/lib/gap1.5.regularizer \ -aweight_bits 0.8\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 -constraints m0.cst -constraints_out tmp_1-a.cst Reading parameter file /projects/compbio/lib/gap1.5.regularizer /projects/compbio/lib/gap1.5.regularizer(1): Reading REGULARIZER: gap1.5. Weak regularizer, gaps average 1.5, matches average 10 SAM: modelfromalign v3.2 (June, 2000) compiled 07/06/00_15:43:15 Reading alignment file m0.a2m (1 sequences, 352 columns) as A2M alignment. @@@@ hmmscore tmp_1-a -i tmp_1-a.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 517398 \ -simple_threshold -26.3669080550283 -Emax 0.0001 \ -adpstyle 1 \ -align_short 0 -mdEmax 0.0001\ -select_score 4 \ -select_seq 4 \ -select_mdalign 4 -select_md 4 -Motifcutoff 0.0568181818181818 -db prefilter_1.fa -constraints tmp_1-a.cst -constraints_out tmp_1-a-md.cst Reading parameter file tmp_1-a.mod tmp_1-a.mod(21): Reading MODEL -- Model from alignment file m0.a2m SAM: hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -69.355392 Database has 773 sequences with 259409 residues. @@@@ sortseq tmp_1-a-sort -alignfile tmp_1-a.mult \ -NLLfile tmp_1-a.mstat -a2mdots 0 SAM: sortseq v3.2 (June, 2000) compiled 07/06/00_15:43:43 Reading alignment file tmp_1-a.mult (565 sequences, 352 columns) as A2M alignment. Reading scores from file tmp_1-a.mstat Writing sequence output to tmp_1-a-sort.a2m. @@@@ cat m0.a2m tmp_1-a-sort.a2m > tmp_1-a.train.seq @@@@ cat m0.cst tmp_1-a-md.cst > tmp_1-a.train.cst # About to count sequences in tmp_1-a.train.seq # num_seqs=566 nll_thresh=-22.3669080550283 frac_id=0.678022291985132 @@@@ uniqueseq thinned_tmp -alignfile tmp_1-a.train.seq -a protein \ -percent_id 0.678022291985132 -a2mdots 0 SAM: uniqueseq v3.2 (June, 2000) compiled 07/06/00_15:43:59 Reading alignment file tmp_1-a.train.seq (566 sequences, 352 columns) as A2M alignment. Writing sequence output to thinned_tmp.a2m. Dropping 114 (of 566) duplicate sequences with differing IDs Dropping 286 (of 566) sequences with > 67.8% id 166 sequences left after dropping 400 of 566 sequences. @@@@ modelfromalign junk_for_weights \ -alignfile tmp_1-a.train.seq \ -aweight_bits 0.8\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 SAM: modelfromalign v3.2 (June, 2000) compiled 07/06/00_15:43:15 Reading alignment file tmp_1-a.train.seq (166 sequences, 352 columns) as A2M alignment. @@@@ buildmodel tmp_1-b -insert tmp_1-a.mod\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -modellength 0 \ -internal_weight 0 \ -anneal_length 2 \ -many_files 1 \ -Nseq 20000\ -nsurgery 0 \ -fracinsert 0.2 \ -cutinsert 0.25 -cutmatch 0.2 -initial_noise 0.0001 -anneal_noise 0.000001 \ -internal_weight 0 \ -train tmp_1-a.train.seq \ -nmodels 1\ -insert /projects/compbio/lib/gap1.5.regularizer -sequence_weights tmp_1-a.w -constraints tmp_1-a.train.cst Reading parameter file tmp_1-a.mod tmp_1-a.mod(21): Reading MODEL -- Model from alignment file m0.a2m Command line option(48): internal_weight has already been set. Using 0. Reading parameter file /projects/compbio/lib/gap1.5.regularizer /projects/compbio/lib/gap1.5.regularizer(1): Reading REGULARIZER: gap1.5. Weak regularizer, gaps average 1.5, matches average 10 SAM: buildmodel v3.2 (June, 2000) compiled 07/07/00_22:42:24 -1016.23 81.13 -208.53 118.08 14 0 353 @@@@ hmmscore tmp_1-b -i tmp_1-b.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 517398 \ -db m0.a2m -db tmp_1-a.sel \ -select_score 4 \ -select_seq 4 \ -simple_threshold -26.3669080550283 -Emax 0.0001 \ -select_mdalign 4 -select_md 4 \ -adpstyle 1 \ -Motifcutoff 0.0568181818181818 \ -align_short 5 -mdEmax 0.0001 -constraints tmp_1-a.train.cst -constraints_out /projects/compbio/experiments/casp4/t112/T0112.t2k_1.cst Reading parameter file tmp_1-b.mod tmp_1-b.mod(18): Reading MODEL -- Final model for run tmp_1-b SAM: hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -262.029358 Database has 676 sequences with 227666 residues. @@@@ cp -f tmp_1-b.mult /projects/compbio/experiments/casp4/t112/T0112.t2k_1.a2m # About to count sequences in prefilter_2.fa @@@@ modelfromalign tmp_2-a -alignfile /projects/compbio/experiments/casp4/t112/T0112.t2k_1.a2m \ -insert /projects/compbio/lib/stiff-gap5.regularizer \ -aweight_bits 0.7\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 -constraints /projects/compbio/experiments/casp4/t112/T0112.t2k_1.cst -constraints_out tmp_2-a.cst Reading parameter file /projects/compbio/lib/stiff-gap5.regularizer /projects/compbio/lib/stiff-gap5.regularizer(1): Reading REGULARIZER: gap5. stiff regularizer, gaps averge 5, matches average 10 SAM: modelfromalign v3.2 (June, 2000) compiled 07/06/00_15:43:15 Reading alignment file /projects/compbio/experiments/casp4/t112/T0112.t2k_1.a2m (676 sequences, 352 columns) as A2M alignment. @@@@ hmmscore tmp_2-a -i tmp_2-a.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 517398 \ -simple_threshold -25.673760874275 -Emax 0.0002 \ -adpstyle 1 \ -align_short 0 -mdEmax 0.0002\ -select_score 4 \ -select_seq 4 \ -select_mdalign 4 -select_md 4 -Motifcutoff 0.0568181818181818 -db prefilter_2.fa -constraints tmp_2-a.cst -constraints_out tmp_2-a-md.cst Reading parameter file tmp_2-a.mod tmp_2-a.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/experiments/casp4/t112/T0112.t2k_1.a2m SAM: hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -252.168152 Database has 834 sequences with 279109 residues. @@@@ sortseq tmp_2-a-sort -alignfile tmp_2-a.mult \ -NLLfile tmp_2-a.mstat -a2mdots 0 SAM: sortseq v3.2 (June, 2000) compiled 07/06/00_15:43:43 Reading alignment file tmp_2-a.mult (835 sequences, 352 columns) as A2M alignment. Reading scores from file tmp_2-a.mstat Writing sequence output to tmp_2-a-sort.a2m. @@@@ cat m0.a2m tmp_2-a-sort.a2m > tmp_2-a.train.seq @@@@ cat m0.cst tmp_2-a-md.cst > tmp_2-a.train.cst # About to count sequences in tmp_2-a.train.seq # num_seqs=836 nll_thresh=-21.673760874275 frac_id=0.651562617258186 @@@@ uniqueseq thinned_tmp -alignfile tmp_2-a.train.seq -a protein \ -percent_id 0.651562617258186 -a2mdots 0 SAM: uniqueseq v3.2 (June, 2000) compiled 07/06/00_15:43:59 Reading alignment file tmp_2-a.train.seq (836 sequences, 352 columns) as A2M alignment. Writing sequence output to thinned_tmp.a2m. Dropping 22 (of 836) duplicate sequences with differing IDs Dropping 598 (of 836) sequences with > 65.2% id 216 sequences left after dropping 620 of 836 sequences. @@@@ modelfromalign junk_for_weights \ -alignfile tmp_2-a.train.seq \ -aweight_bits 0.7\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 SAM: modelfromalign v3.2 (June, 2000) compiled 07/06/00_15:43:15 Reading alignment file tmp_2-a.train.seq (216 sequences, 352 columns) as A2M alignment. @@@@ buildmodel tmp_2-b -insert tmp_2-a.mod\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -modellength 0 \ -internal_weight 0 \ -anneal_length 2 \ -many_files 1 \ -Nseq 20000\ -nsurgery 0 \ -fracinsert 0.2 \ -cutinsert 0.25 -cutmatch 0.2 -initial_noise 0.0001 -anneal_noise 0.000001 \ -internal_weight 0 \ -train tmp_2-a.train.seq \ -nmodels 1\ -insert /projects/compbio/lib/stiff-gap5.regularizer -sequence_weights tmp_2-a.w -constraints tmp_2-a.train.cst Reading parameter file tmp_2-a.mod tmp_2-a.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/experiments/casp4/t112/T0112.t2k_1.a2m Command line option(48): internal_weight has already been set. Using 0. Reading parameter file /projects/compbio/lib/stiff-gap5.regularizer /projects/compbio/lib/stiff-gap5.regularizer(1): Reading REGULARIZER: gap5. stiff regularizer, gaps averge 5, matches average 10 SAM: buildmodel v3.2 (June, 2000) compiled 07/07/00_22:42:24 -1014.99 22.78 -217.78 76.26 4 0 353 @@@@ hmmscore tmp_2-b -i tmp_2-b.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 517398 \ -db m0.a2m -db tmp_2-a.sel \ -select_score 4 \ -select_seq 4 \ -simple_threshold -25.673760874275 -Emax 0.0002 \ -select_mdalign 4 -select_md 4 \ -adpstyle 1 \ -Motifcutoff 0.0568181818181818 \ -align_short 5 -mdEmax 0.0002 -constraints tmp_2-a.train.cst -constraints_out /projects/compbio/experiments/casp4/t112/T0112.t2k_2.cst Reading parameter file tmp_2-b.mod tmp_2-b.mod(18): Reading MODEL -- Final model for run tmp_2-b SAM: hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -215.389618 Database has 834 sequences with 279443 residues. @@@@ cp -f tmp_2-b.mult /projects/compbio/experiments/casp4/t112/T0112.t2k_2.a2m # About to count sequences in prefilter_3.fa @@@@ modelfromalign tmp_3-a -alignfile /projects/compbio/experiments/casp4/t112/T0112.t2k_2.a2m \ -insert /projects/compbio/lib/stiff-gap5.regularizer \ -aweight_bits 0.6\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 -constraints /projects/compbio/experiments/casp4/t112/T0112.t2k_2.cst -constraints_out tmp_3-a.cst Reading parameter file /projects/compbio/lib/stiff-gap5.regularizer /projects/compbio/lib/stiff-gap5.regularizer(1): Reading REGULARIZER: gap5. stiff regularizer, gaps averge 5, matches average 10 SAM: modelfromalign v3.2 (June, 2000) compiled 07/06/00_15:43:15 Reading alignment file /projects/compbio/experiments/casp4/t112/T0112.t2k_2.a2m (836 sequences, 352 columns) as A2M alignment. @@@@ hmmscore tmp_3-a -i tmp_3-a.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 517398 \ -simple_threshold -24.0643229602947 -Emax 0.001 \ -adpstyle 1 \ -align_short 0 -mdEmax 0.001\ -select_score 4 \ -select_seq 4 \ -select_mdalign 4 -select_md 4 -Motifcutoff 0.0568181818181818 -db prefilter_3.fa -constraints tmp_3-a.cst -constraints_out tmp_3-a-md.cst Reading parameter file tmp_3-a.mod tmp_3-a.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/experiments/casp4/t112/T0112.t2k_2.a2m SAM: hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -232.476898 Database has 892 sequences with 298855 residues. @@@@ sortseq tmp_3-a-sort -alignfile tmp_3-a.mult \ -NLLfile tmp_3-a.mstat -a2mdots 0 SAM: sortseq v3.2 (June, 2000) compiled 07/06/00_15:43:43 Reading alignment file tmp_3-a.mult (873 sequences, 352 columns) as A2M alignment. Reading scores from file tmp_3-a.mstat Writing sequence output to tmp_3-a-sort.a2m. @@@@ cat m0.a2m tmp_3-a-sort.a2m > tmp_3-a.train.seq @@@@ cat m0.cst tmp_3-a-md.cst > tmp_3-a.train.cst # About to count sequences in tmp_3-a.train.seq # num_seqs=874 nll_thresh=-20.0643229602947 frac_id=0.645713194346124 @@@@ uniqueseq thinned_tmp -alignfile tmp_3-a.train.seq -a protein \ -percent_id 0.645713194346124 -a2mdots 0 SAM: uniqueseq v3.2 (June, 2000) compiled 07/06/00_15:43:59 Reading alignment file tmp_3-a.train.seq (874 sequences, 352 columns) as A2M alignment. Writing sequence output to thinned_tmp.a2m. Dropping 19 (of 874) duplicate sequences with differing IDs Dropping 634 (of 874) sequences with > 64.6% id 221 sequences left after dropping 653 of 874 sequences. @@@@ modelfromalign junk_for_weights \ -alignfile tmp_3-a.train.seq \ -aweight_bits 0.6\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 SAM: modelfromalign v3.2 (June, 2000) compiled 07/06/00_15:43:15 Reading alignment file tmp_3-a.train.seq (221 sequences, 352 columns) as A2M alignment. @@@@ buildmodel tmp_3-b -insert tmp_3-a.mod\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -modellength 0 \ -internal_weight 0 \ -anneal_length 2 \ -many_files 1 \ -Nseq 20000\ -nsurgery 0 \ -fracinsert 0.2 \ -cutinsert 0.25 -cutmatch 0.2 -initial_noise 0.0001 -anneal_noise 0.000001 \ -internal_weight 0 \ -train tmp_3-a.train.seq \ -nmodels 1\ -insert /projects/compbio/lib/stiff-gap5.regularizer -sequence_weights tmp_3-a.w -constraints tmp_3-a.train.cst Reading parameter file tmp_3-a.mod tmp_3-a.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/experiments/casp4/t112/T0112.t2k_2.a2m Command line option(48): internal_weight has already been set. Using 0. Reading parameter file /projects/compbio/lib/stiff-gap5.regularizer /projects/compbio/lib/stiff-gap5.regularizer(1): Reading REGULARIZER: gap5. stiff regularizer, gaps averge 5, matches average 10 SAM: buildmodel v3.2 (June, 2000) compiled 07/07/00_22:42:24 -1015.45 25.14 -201.68 75.87 5 0 353 @@@@ hmmscore tmp_3-b -i tmp_3-b.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 517398 \ -db m0.a2m -db tmp_3-a.sel \ -select_score 4 \ -select_seq 4 \ -simple_threshold -24.0643229602947 -Emax 0.001 \ -select_mdalign 4 -select_md 4 \ -adpstyle 1 \ -Motifcutoff 0.0568181818181818 \ -align_short 5 -mdEmax 0.001 -constraints tmp_3-a.train.cst -constraints_out /projects/compbio/experiments/casp4/t112/T0112.t2k_3.cst Reading parameter file tmp_3-b.mod tmp_3-b.mod(18): Reading MODEL -- Final model for run tmp_3-b SAM: hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -200.089951 Database has 873 sequences with 294457 residues. @@@@ cp -f tmp_3-b.mult /projects/compbio/experiments/casp4/t112/T0112.t2k_3.a2m # About to count sequences in prefilter_4.fa @@@@ modelfromalign tmp_4-a -alignfile /projects/compbio/experiments/casp4/t112/T0112.t2k_3.a2m \ -insert /projects/compbio/lib/fssp-trained.regularizer \ -aweight_bits 0.5\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 -constraints /projects/compbio/experiments/casp4/t112/T0112.t2k_3.cst -constraints_out tmp_4-a.cst Reading parameter file /projects/compbio/lib/fssp-trained.regularizer /projects/compbio/lib/fssp-trained.regularizer(1): Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP SAM: modelfromalign v3.2 (June, 2000) compiled 07/06/00_15:43:15 Reading alignment file /projects/compbio/experiments/casp4/t112/T0112.t2k_3.a2m (874 sequences, 352 columns) as A2M alignment. @@@@ hmmscore tmp_4-a -i tmp_4-a.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 517398 \ -simple_threshold -22.4548850401296 -Emax 0.005 \ -adpstyle 1 \ -align_short 0 -mdEmax 0.005\ -select_score 4 \ -select_seq 4 \ -select_mdalign 4 -select_md 4 -Motifcutoff 0.0568181818181818 -db prefilter_4.fa -constraints tmp_4-a.cst -constraints_out tmp_4-a-md.cst Reading parameter file tmp_4-a.mod tmp_4-a.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/experiments/casp4/t112/T0112.t2k_3.a2m SAM: hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) .. Average NLL-Simple NULL score: -154.640976 Database has 1353 sequences with 444936 residues. @@@@ sortseq tmp_4-a-sort -alignfile tmp_4-a.mult \ -NLLfile tmp_4-a.mstat -a2mdots 0 SAM: sortseq v3.2 (June, 2000) compiled 07/06/00_15:43:43 Reading alignment file tmp_4-a.mult (932 sequences, 352 columns) as A2M alignment. Reading scores from file tmp_4-a.mstat Writing sequence output to tmp_4-a-sort.a2m. @@@@ cat m0.a2m tmp_4-a-sort.a2m > tmp_4-a.train.seq @@@@ cat m0.cst tmp_4-a-md.cst > tmp_4-a.train.cst # About to count sequences in tmp_4-a.train.seq # num_seqs=933 nll_thresh=-18.4548850401296 frac_id=0.639431828982327 @@@@ uniqueseq thinned_tmp -alignfile tmp_4-a.train.seq -a protein \ -percent_id 0.639431828982327 -a2mdots 0 SAM: uniqueseq v3.2 (June, 2000) compiled 07/06/00_15:43:59 Reading alignment file tmp_4-a.train.seq (933 sequences, 352 columns) as A2M alignment. Writing sequence output to thinned_tmp.a2m. Dropping 23 (of 933) duplicate sequences with differing IDs Dropping 664 (of 933) sequences with > 63.9% id 246 sequences left after dropping 687 of 933 sequences. @@@@ modelfromalign junk_for_weights \ -alignfile tmp_4-a.train.seq \ -aweight_bits 0.5\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 SAM: modelfromalign v3.2 (June, 2000) compiled 07/06/00_15:43:15 Reading alignment file tmp_4-a.train.seq (246 sequences, 352 columns) as A2M alignment. @@@@ buildmodel tmp_4-b -insert tmp_4-a.mod\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -modellength 0 \ -internal_weight 0 \ -anneal_length 2 \ -many_files 1 \ -Nseq 20000\ -nsurgery 0 \ -fracinsert 0.2 \ -cutinsert 0.25 -cutmatch 0.2 -initial_noise 0.0001 -anneal_noise 0.000001 \ -internal_weight 0 \ -train tmp_4-a.train.seq \ -nmodels 1\ -insert /projects/compbio/lib/fssp-trained.regularizer -sequence_weights tmp_4-a.w -constraints tmp_4-a.train.cst Reading parameter file tmp_4-a.mod tmp_4-a.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/experiments/casp4/t112/T0112.t2k_3.a2m Command line option(48): internal_weight has already been set. Using 0. Reading parameter file /projects/compbio/lib/fssp-trained.regularizer /projects/compbio/lib/fssp-trained.regularizer(1): Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP SAM: buildmodel v3.2 (June, 2000) compiled 07/07/00_22:42:24 -1015.66 32.51 -188.42 75.75 4 0 353 @@@@ hmmscore tmp_4-b -i tmp_4-b.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 517398 \ -db m0.a2m -db tmp_4-a.sel \ -select_score 4 \ -select_seq 4 \ -simple_threshold -22.4548850401296 -Emax 0.005 \ -select_mdalign 4 -select_md 4 \ -adpstyle 1 \ -Motifcutoff 0.0568181818181818 \ -align_short 5 -mdEmax 0.005 -constraints tmp_4-a.train.cst -constraints_out /projects/compbio/experiments/casp4/t112/T0112.t2k_4.cst Reading parameter file tmp_4-b.mod tmp_4-b.mod(18): Reading MODEL -- Final model for run tmp_4-b SAM: hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -187.377213 Database has 928 sequences with 368323 residues. @@@@ cp -f tmp_4-b.mult /projects/compbio/experiments/casp4/t112/T0112.t2k_4.a2m @@@@ modelfromalign tmp_5-a -alignfile /projects/compbio/experiments/casp4/t112/T0112.t2k_4.a2m \ -insert /projects/compbio/lib/fssp-trained.regularizer \ -aweight_bits 0.5\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 -constraints /projects/compbio/experiments/casp4/t112/T0112.t2k_4.cst -constraints_out tmp_5-a.cst Reading parameter file /projects/compbio/lib/fssp-trained.regularizer /projects/compbio/lib/fssp-trained.regularizer(1): Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP SAM: modelfromalign v3.2 (June, 2000) compiled 07/06/00_15:43:15 Reading alignment file /projects/compbio/experiments/casp4/t112/T0112.t2k_4.a2m (933 sequences, 352 columns) as A2M alignment. @@@@ hmmscore tmp_5-a -i tmp_5-a.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 517398 \ -simple_threshold -22.4548850401296 -Emax 0.005 \ -adpstyle 5 \ -align_short 0 -mdEmax 0.005\ -select_score 4 \ -select_seq 4 \ -select_mdalign 4 -select_md 4 -Motifcutoff 0.0568181818181818 -db prefilter_4.fa -constraints tmp_5-a.cst -constraints_out tmp_5-a-md.cst Reading parameter file tmp_5-a.mod tmp_5-a.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/experiments/casp4/t112/T0112.t2k_4.a2m SAM: hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) .. Average NLL-Simple NULL score: -156.761368 Database has 1353 sequences with 444936 residues. @@@@ sortseq tmp_5-a-sort -alignfile tmp_5-a.mult \ -NLLfile tmp_5-a.mstat -a2mdots 0 SAM: sortseq v3.2 (June, 2000) compiled 07/06/00_15:43:43 Reading alignment file tmp_5-a.mult (901 sequences, 352 columns) as A2M alignment. Reading scores from file tmp_5-a.mstat Writing sequence output to tmp_5-a-sort.a2m. @@@@ cat m0.a2m tmp_5-a-sort.a2m > tmp_5-a.train.seq @@@@ cat m0.cst tmp_5-a-md.cst > tmp_5-a.train.cst @@@@ cp tmp_5-a.train.seq /projects/compbio/experiments/casp4/t112/T0112.t2k.a2m @@@@ cp tmp_5-a.train.cst /projects/compbio/experiments/casp4/t112/T0112.t2k.cst @@@@ rm -rf /projects/compbio/tmp/target2k-eclipse-19696 < /dev/null gzip -f T0112.t2k.a2m T0112.t2k_*.a2m prettyalign T0112.t2k.a2m.gz -m8 -i -n -L3333 > T0112.t2k.pa SAM: prettyalign v3.2 (June, 2000) compiled 07/10/00_09:40:44 gunzip -c T0112.t2k.a2m.gz > tmp.a2m a2m2html -a2m_in tmp.a2m -retrieve > T0112.t2k.pa.html SAM: /projects/compbio/bin/alpha/prettyalign v3.2 (June, 2000) compiled 07/10/00_09:40:44 rm tmp.a2m echo ReadNeuralNet /projects/compbio/usr/karplus/predict-2nd/testing/networks/overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net > tmp.script echo ReadA2M T0112.t2k.a2m.gz >> tmp.script echo PrintPrediction T0112.t2k.2d 3670-4530-6947 >> tmp.script echo PrintPredictionFasta T0112.t2k.2d.seq >> tmp.script echo PrintRDB T0112.t2k.2d.rdb >> tmp.script predict-2nd < tmp.script # command:# Neural network set to overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net # command:# Reading A2M format from T0112.t2k.a2m.gz # Using SequenceWeight EntropyWeight(1.4, 10) # Using regularizer /projects/compbio/lib/recode3.20comp for sequence weight regularizer. # T0112.t2k.a2m with 902 sequences, total weight= 456.756 avg weight= 0.506382 46 iterations # AdjustWeights couldn't save exactly 1.4 bits/position, saving 1.22093 bits. Regularizing alignment for T0112.t2k.a2m.gz # After reading T0112.t2k.a2m.gz, have 352 columns in 1 chains # command:# Initializing Gain for FinalLayer # Initializing Gain for ordering_layer # Initializing Gain for SecondLayer # Initializing Gain for FirstLayer # Network initialization done # Printing prediction to T0112.t2k.2d # command:# Network initialization done # Printing prediction in FASTA format to T0112.t2k.2d.seq # command:# Network initialization done # Printing prediction to T0112.t2k.2d.rdb # command:rm tmp.script gunzip -f T0112.t2k.a2m.gz /projects/compbio/usr/karplus/src/phytree/phytree -o -i -r flat T0112.t2k T0112.t2k.a2m /projects/compbio/lib/recode2.20comp Prior library /projects/compbio/lib/recode2.20comp read. Reading alignment file T0112.t2k.a2m (902 sequences) as A2M alignment. Alignment T0112.t2k.a2m read. Adding sequences:0 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 One dot for every 10 merges: .......................................................................................... Merges done. CPU = user 0:45:58 system 0: 0: 3 gzip -f T0112.t2k.a2m gzip -f T0112.t2k_sorted.a2m rm T0112.t2k.phytrace T0112.t2k.tree_weight prettyalign T0112.t2k_sorted.a2m.gz -m8 -i -n -L3333 > T0112.t2k_sorted.pa SAM: prettyalign v3.2 (June, 2000) compiled 07/10/00_09:40:44 /projects/compbio/usr/karplus/src/phytree/dg T0112.t2k.tree /projects/compbio/usr/karplus/src/phytree/dg: 19951 Memory fault /projects/compbio/usr/karplus/src/phytree/dtree T0112.t2k.tree /projects/compbio/usr/karplus/src/phytree/dtree: 16853 Memory fault make[1]: Leaving directory `/auto/projects/compbio/experiments/casp4/t112' /projects/compbio/experiments/models.97/scripts99/score-target -alignment T0112.t2k.a2m.gz -build w0.5 \ -db /projects/compbio/data/pdb/all-protein \ -Emax 40.0 \ -viterbi 0 -sw_score 2 \ -output T0112.t2k-w0.5-pdb.rdb PATH=.:/projects/compbio/experiments/models.97/scripts99:/projects/compbio/bin:/projects/compbio/bin/alpha:/projects/compbio/bin/hmmscripts:/projects/compbio/bin/scripts:/sbin:/usr/sbin:/bin:/usr/bin:/usr/local/gnu/bin:/usr/local/share/request/bin:/usr/local/bin @@@@ mkdir /projects/compbio/tmp/score-target-15476 @@@@ mkdir /projects/compbio/tmp/score-target-15476/for-scorescript @@@@ /projects/compbio/experiments/models.97/scripts99/score-mods-vs-seqs.pl -root_tmp /projects/compbio/tmp/score-target-15476/for-scorescript -a2msfile /projects/compbio/tmp/score-target-15476/score-target.a2m \ -buildscript /projects/compbio/bin/scripts/w0.5 -seqfile /projects/compbio/data/pdb/all-protein -Emax 40.0 -viterbi 0 \ -sw_score 2 -output /projects/compbio/tmp/score-target-15476/score-target.op @@@@ chgrp protein /projects/compbio/tmp/score-target-15476/for-scorescript/split-tmp @@@@ chgrp protein /projects/compbio/tmp/score-target-15476/for-scorescript/split-tmp @@@@ /projects/compbio/bin/scripts/w0.5 /projects/compbio/experiments/casp4/t112/T0112.t2k.a2m.gz /projects/compbio/tmp/score-target-15476/for-scorescript/split-tmp/eclipse-20177/T0112.t2k.mod Reading /projects/compbio/bin/scripts/sam-t99.conf @@@@ chgrp protein /projects/compbio/tmp/tmp-build-weighted-model-eclipse-18860 @@@@ uniqueseq /projects/compbio/tmp/tmp-build-weighted-model-eclipse-18860/tmp -alignfile /projects/compbio/experiments/casp4/t112/T0112.t2k.a2m.gz \ -a protein -percent_id 0.8 SAM: uniqueseq v3.2 (June, 2000) compiled 07/06/00_15:43:59 Reading alignment file /projects/compbio/experiments/casp4/t112/T0112.t2k.a2m.gz (902 sequences, 352 columns) as A2M alignment. Writing sequence output to /projects/compbio/tmp/tmp-build-weighted-model-eclipse-18860/tmp.a2m. Dropping 28 (of 902) duplicate sequences with differing IDs Dropping 558 (of 902) sequences with > 80.0% id 316 sequences left after dropping 586 of 902 sequences. @@@@ modelfromalign /projects/compbio/tmp/tmp-build-weighted-model-eclipse-18860/tmp -alignfile /projects/compbio/tmp/tmp-build-weighted-model-eclipse-18860/tmp.a2m \ -insert /projects/compbio/lib/fssp-trained.regularizer \ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -prior_library /projects/compbio/lib/recode3.20comp \ -binary_output 1 -a protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10 Reading parameter file /projects/compbio/lib/fssp-trained.regularizer /projects/compbio/lib/fssp-trained.regularizer(1): Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP SAM: modelfromalign v3.2 (June, 2000) compiled 07/06/00_15:43:15 Reading alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-18860/tmp.a2m (316 sequences, 352 columns) as A2M alignment. @@@@ cp -f /projects/compbio/tmp/tmp-build-weighted-model-eclipse-18860/tmp.mod /projects/compbio/tmp/score-target-15476/for-scorescript/split-tmp/eclipse-20177/T0112.t2k.mod Reading /projects/compbio/bin/scripts/sam-t99.conf @@@@ hmmscore /projects/compbio/tmp/score-target-15476/for-scorescript/split-tmp/eclipse-20177/tmp20177 -i /projects/compbio/tmp/score-target-15476/for-scorescript/split-tmp/eclipse-20177/T0112.t2k.mod -db /projects/compbio/data/pdb/all-protein -SW_score 2 -viterbi 0 -select_score 4 -Emax 40.0 Reading parameter file /projects/compbio/tmp/score-target-15476/for-scorescript/split-tmp/eclipse-20177/T0112.t2k.mod /projects/compbio/tmp/score-target-15476/for-scorescript/split-tmp/eclipse-20177/T0112.t2k.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-18860/tmp.a2m SAM: hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) ....................... Average NLL-Simple NULL score: -13.609748 Database has 22382 sequences with 4866807 residues. @@@@ mv /projects/compbio/tmp/score-target-15476/for-scorescript/split-tmp/eclipse-20177/op_temp20177 /projects/compbio/tmp/score-target-15476/score-target.op @@@@ rsh beta rm -rf /projects/compbio/tmp/score-target-15476/for-scorescript/split-tmp/eclipse-20177 < /dev/null @@@@ rm -rf /projects/compbio/tmp/score-target-15476 /projects/compbio/bin/scripts/score-lib-t99 \ -targetseq T0112.seq \ -targeta2m T0112.t2k.a2m.gz \ -db "PDB and SCOP domains" \ -evalue 60.0 \ -hitsout T0112-t2k-t99.rdb Process ID: 17341 Command line args: targetseq: T0112.seq targeta2m: T0112.t2k.a2m.gz hitsoutfile: T0112-t2k-t99.rdb evalue: 60.0 db_option_str: PDB and SCOP domains db_ids_file: /projects/compbio/experiments/models.97/indexes/t99.ids db_seqfiles_list_ref: /projects/compbio/data/pdb/all-protein:/projects/compbio/experiments/test-set/fold-recognition-test/chothia-test/domains/domains.seqs db_aligndirs_list_ref: /projects/compbio/experiments/models.97/pdb:/projects/compbio4/experiments/models.97/domains entering get_template_model_for_db_search: template_id: 119l id: 119l alignment found: /projects/compbio/experiments/models.97/pdb/11/119l/nostruct-align/119l.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/11/119l/nostruct-align/119l.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/11/119l/nostruct-align/119l.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file ./tmp/tmp-build-weighted-model-titanic-28907/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.414429 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 12asA id: 12asA alignment found: /projects/compbio/experiments/models.97/pdb/12/12asA/nostruct-align/12asA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/12/12asA/nostruct-align/12asA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/12/12asA/nostruct-align/12asA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1277/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.173462 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 153l id: 153l alignment found: /projects/compbio/experiments/models.97/pdb/15/153l/nostruct-align/153l.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/15/153l/nostruct-align/153l.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/15/153l/nostruct-align/153l.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32612/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.645386 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 16pk id: 16pk alignment found: /projects/compbio/experiments/models.97/pdb/16/16pk/nostruct-align/16pk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/16/16pk/nostruct-align/16pk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/16/16pk/nostruct-align/16pk.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29881/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.272400 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 16vpA id: 16vpA alignment found: /projects/compbio/experiments/models.97/pdb/16/16vpA/nostruct-align/16vpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/16/16vpA/nostruct-align/16vpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/16/16vpA/nostruct-align/16vpA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15590/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.416382 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1914 id: 1914 alignment found: /projects/compbio/experiments/models.97/pdb/19/1914/nostruct-align/1914.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/19/1914/nostruct-align/1914.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/19/1914/nostruct-align/1914.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10425/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.022339 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 193l id: 193l alignment found: /projects/compbio/experiments/models.97/pdb/19/193l/nostruct-align/193l.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/19/193l/nostruct-align/193l.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/19/193l/nostruct-align/193l.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29135/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.966431 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 19hcA id: 19hcA alignment found: /projects/compbio/experiments/models.97/pdb/19/19hcA/nostruct-align/19hcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/19/19hcA/nostruct-align/19hcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/19/19hcA/nostruct-align/19hcA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4420/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.428467 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a02F id: 1a02F alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a02F/nostruct-align/1a02F.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a02F/nostruct-align/1a02F.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a02F/nostruct-align/1a02F.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7361/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -22.775391 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a02J id: 1a02J alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a02J/nostruct-align/1a02J.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a02J/nostruct-align/1a02J.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a02J/nostruct-align/1a02J.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14596/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -20.036377 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a02N id: 1a02N alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a02N/nostruct-align/1a02N.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a02N/nostruct-align/1a02N.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a02N/nostruct-align/1a02N.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21170/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.108398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a04A id: 1a04A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a04A/nostruct-align/1a04A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a04A/nostruct-align/1a04A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a04A/nostruct-align/1a04A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3811/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.598389 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a0aA id: 1a0aA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a0aA/nostruct-align/1a0aA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a0aA/nostruct-align/1a0aA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a0aA/nostruct-align/1a0aA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12085/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.243408 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a0cA id: 1a0cA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a0cA/nostruct-align/1a0cA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a0cA/nostruct-align/1a0cA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a0cA/nostruct-align/1a0cA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15521/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.443420 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a0fA id: 1a0fA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a0fA/nostruct-align/1a0fA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a0fA/nostruct-align/1a0fA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a0fA/nostruct-align/1a0fA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5940/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.529419 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a0hA id: 1a0hA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a0hA/nostruct-align/1a0hA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a0hA/nostruct-align/1a0hA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a0hA/nostruct-align/1a0hA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12859/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.480347 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a0i id: 1a0i alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a0i/nostruct-align/1a0i.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a0i/nostruct-align/1a0i.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a0i/nostruct-align/1a0i.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26872/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.802368 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a0oD id: 1a0oD alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a0oD/nostruct-align/1a0oD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a0oD/nostruct-align/1a0oD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a0oD/nostruct-align/1a0oD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16806/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.585449 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a0p id: 1a0p alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a0p/nostruct-align/1a0p.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a0p/nostruct-align/1a0p.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a0p/nostruct-align/1a0p.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19406/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.468384 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a0tP id: 1a0tP alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a0tP/nostruct-align/1a0tP.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a0tP/nostruct-align/1a0tP.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a0tP/nostruct-align/1a0tP.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17034/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.957397 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a12A id: 1a12A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a12A/nostruct-align/1a12A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a12A/nostruct-align/1a12A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a12A/nostruct-align/1a12A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11235/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.951416 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a15A id: 1a15A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a15A/nostruct-align/1a15A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a15A/nostruct-align/1a15A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a15A/nostruct-align/1a15A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16465/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.633301 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a17 id: 1a17 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a17/nostruct-align/1a17.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a17/nostruct-align/1a17.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a17/nostruct-align/1a17.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14941/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.792358 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a1d id: 1a1d alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a1d/nostruct-align/1a1d.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a1d/nostruct-align/1a1d.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a1d/nostruct-align/1a1d.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25576/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.078369 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a1iA id: 1a1iA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a1iA/nostruct-align/1a1iA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a1iA/nostruct-align/1a1iA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a1iA/nostruct-align/1a1iA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14164/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.671387 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a1tA id: 1a1tA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a1tA/nostruct-align/1a1tA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a1tA/nostruct-align/1a1tA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a1tA/nostruct-align/1a1tA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12208/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.893433 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a1w id: 1a1w alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a1w/nostruct-align/1a1w.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a1w/nostruct-align/1a1w.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a1w/nostruct-align/1a1w.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26789/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.086365 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a1x id: 1a1x alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a1x/nostruct-align/1a1x.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a1x/nostruct-align/1a1x.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a1x/nostruct-align/1a1x.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13366/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.789429 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a1yE id: 1a1yE alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a1yE/nostruct-align/1a1yE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a1yE/nostruct-align/1a1yE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a1yE/nostruct-align/1a1yE.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17300/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.485352 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a1yI id: 1a1yI alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a1yI/nostruct-align/1a1yI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a1yI/nostruct-align/1a1yI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a1yI/nostruct-align/1a1yI.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22100/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.390442 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a1z id: 1a1z alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a1z/nostruct-align/1a1z.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a1z/nostruct-align/1a1z.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a1z/nostruct-align/1a1z.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-382/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.271484 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a26 id: 1a26 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a26/nostruct-align/1a26.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a26/nostruct-align/1a26.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a26/nostruct-align/1a26.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24922/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.696411 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a28A id: 1a28A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a28A/nostruct-align/1a28A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a28A/nostruct-align/1a28A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a28A/nostruct-align/1a28A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3905/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.161377 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a2pA id: 1a2pA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a2pA/nostruct-align/1a2pA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a2pA/nostruct-align/1a2pA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a2pA/nostruct-align/1a2pA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6792/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.855408 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a2vA id: 1a2vA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a2vA/nostruct-align/1a2vA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a2vA/nostruct-align/1a2vA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a2vA/nostruct-align/1a2vA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20801/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.684387 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a2xB id: 1a2xB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a2xB/nostruct-align/1a2xB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a2xB/nostruct-align/1a2xB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a2xB/nostruct-align/1a2xB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15191/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.769409 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a2yB id: 1a2yB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a2yB/nostruct-align/1a2yB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a2yB/nostruct-align/1a2yB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a2yB/nostruct-align/1a2yB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29453/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.147339 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a2zA id: 1a2zA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a2zA/nostruct-align/1a2zA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a2zA/nostruct-align/1a2zA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a2zA/nostruct-align/1a2zA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26569/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.493408 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a32 id: 1a32 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a32/nostruct-align/1a32.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a32/nostruct-align/1a32.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a32/nostruct-align/1a32.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25509/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.759399 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a34A id: 1a34A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a34A/nostruct-align/1a34A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a34A/nostruct-align/1a34A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a34A/nostruct-align/1a34A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23165/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.961365 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a36A id: 1a36A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a36A/nostruct-align/1a36A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a36A/nostruct-align/1a36A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a36A/nostruct-align/1a36A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25252/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.427368 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a3aA id: 1a3aA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a3aA/nostruct-align/1a3aA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a3aA/nostruct-align/1a3aA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a3aA/nostruct-align/1a3aA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24273/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.531372 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a3aC id: 1a3aC alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a3aC/nostruct-align/1a3aC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a3aC/nostruct-align/1a3aC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a3aC/nostruct-align/1a3aC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11505/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.693481 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a3c id: 1a3c alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a3c/nostruct-align/1a3c.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a3c/nostruct-align/1a3c.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a3c/nostruct-align/1a3c.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24708/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.035400 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a3h id: 1a3h alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a3h/nostruct-align/1a3h.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a3h/nostruct-align/1a3h.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a3h/nostruct-align/1a3h.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6922/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.487427 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a3k id: 1a3k alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a3k/nostruct-align/1a3k.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a3k/nostruct-align/1a3k.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a3k/nostruct-align/1a3k.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15848/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.691406 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a3lH id: 1a3lH alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a3lH/nostruct-align/1a3lH.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a3lH/nostruct-align/1a3lH.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a3lH/nostruct-align/1a3lH.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21407/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.678467 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a3lL id: 1a3lL alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a3lL/nostruct-align/1a3lL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a3lL/nostruct-align/1a3lL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a3lL/nostruct-align/1a3lL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30026/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.271362 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a3qA id: 1a3qA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a3qA/nostruct-align/1a3qA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a3qA/nostruct-align/1a3qA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a3qA/nostruct-align/1a3qA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9932/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.708435 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a41 id: 1a41 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a41/nostruct-align/1a41.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a41/nostruct-align/1a41.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a41/nostruct-align/1a41.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28549/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.030396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a44 id: 1a44 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a44/nostruct-align/1a44.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a44/nostruct-align/1a44.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a44/nostruct-align/1a44.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13606/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.890381 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a48 id: 1a48 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a48/nostruct-align/1a48.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a48/nostruct-align/1a48.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a48/nostruct-align/1a48.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25899/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.599365 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a49A id: 1a49A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a49A/nostruct-align/1a49A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a49A/nostruct-align/1a49A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a49A/nostruct-align/1a49A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15921/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.963440 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a4iA id: 1a4iA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a4iA/nostruct-align/1a4iA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a4iA/nostruct-align/1a4iA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a4iA/nostruct-align/1a4iA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15078/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.652405 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a4iB id: 1a4iB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a4iB/nostruct-align/1a4iB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a4iB/nostruct-align/1a4iB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a4iB/nostruct-align/1a4iB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10530/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.376404 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a4mA id: 1a4mA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a4mA/nostruct-align/1a4mA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a4mA/nostruct-align/1a4mA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a4mA/nostruct-align/1a4mA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24256/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.186401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a4sA id: 1a4sA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a4sA/nostruct-align/1a4sA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a4sA/nostruct-align/1a4sA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a4sA/nostruct-align/1a4sA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14865/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.943359 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a4uA id: 1a4uA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a4uA/nostruct-align/1a4uA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a4uA/nostruct-align/1a4uA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a4uA/nostruct-align/1a4uA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29376/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -21.326477 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a4yA id: 1a4yA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a4yA/nostruct-align/1a4yA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a4yA/nostruct-align/1a4yA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a4yA/nostruct-align/1a4yA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10973/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.020386 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a4yB id: 1a4yB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a4yB/nostruct-align/1a4yB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a4yB/nostruct-align/1a4yB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a4yB/nostruct-align/1a4yB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14009/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.262451 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a53 id: 1a53 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a53/nostruct-align/1a53.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a53/nostruct-align/1a53.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a53/nostruct-align/1a53.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6282/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.333374 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a58 id: 1a58 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a58/nostruct-align/1a58.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a58/nostruct-align/1a58.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a58/nostruct-align/1a58.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14135/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.659424 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a5j id: 1a5j alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a5j/nostruct-align/1a5j.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a5j/nostruct-align/1a5j.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a5j/nostruct-align/1a5j.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-28952/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.023315 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a5r id: 1a5r alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a5r/nostruct-align/1a5r.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a5r/nostruct-align/1a5r.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a5r/nostruct-align/1a5r.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-29987/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.924438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a5t id: 1a5t alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a5t/nostruct-align/1a5t.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a5t/nostruct-align/1a5t.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a5t/nostruct-align/1a5t.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24553/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.539429 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a62 id: 1a62 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a62/nostruct-align/1a62.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a62/nostruct-align/1a62.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a62/nostruct-align/1a62.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-32478/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.016357 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a65A id: 1a65A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a65A/nostruct-align/1a65A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a65A/nostruct-align/1a65A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a65A/nostruct-align/1a65A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23733/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.888428 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a68 id: 1a68 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a68/nostruct-align/1a68.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a68/nostruct-align/1a68.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a68/nostruct-align/1a68.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22909/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.571411 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a6bB id: 1a6bB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6bB/nostruct-align/1a6bB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6bB/nostruct-align/1a6bB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a6bB/nostruct-align/1a6bB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13101/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.550415 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a6cA id: 1a6cA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6cA/nostruct-align/1a6cA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6cA/nostruct-align/1a6cA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a6cA/nostruct-align/1a6cA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-138/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.859375 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a6dA id: 1a6dA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6dA/nostruct-align/1a6dA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6dA/nostruct-align/1a6dA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a6dA/nostruct-align/1a6dA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14935/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.456421 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a6f id: 1a6f alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6f/nostruct-align/1a6f.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6f/nostruct-align/1a6f.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a6f/nostruct-align/1a6f.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20567/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.808472 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a6jA id: 1a6jA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6jA/nostruct-align/1a6jA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6jA/nostruct-align/1a6jA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a6jA/nostruct-align/1a6jA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31724/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.679443 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a6l id: 1a6l alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6l/nostruct-align/1a6l.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6l/nostruct-align/1a6l.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a6l/nostruct-align/1a6l.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15406/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.800354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a6m id: 1a6m alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6m/nostruct-align/1a6m.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6m/nostruct-align/1a6m.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a6m/nostruct-align/1a6m.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26276/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.803467 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a6o id: 1a6o alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6o/nostruct-align/1a6o.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6o/nostruct-align/1a6o.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a6o/nostruct-align/1a6o.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12373/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.233398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a6q id: 1a6q alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6q/nostruct-align/1a6q.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6q/nostruct-align/1a6q.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a6q/nostruct-align/1a6q.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26494/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.122375 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a6s id: 1a6s alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6s/nostruct-align/1a6s.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6s/nostruct-align/1a6s.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a6s/nostruct-align/1a6s.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5380/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.467346 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a73A id: 1a73A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a73A/nostruct-align/1a73A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a73A/nostruct-align/1a73A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a73A/nostruct-align/1a73A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24397/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.458435 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a75A id: 1a75A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a75A/nostruct-align/1a75A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a75A/nostruct-align/1a75A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a75A/nostruct-align/1a75A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32597/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.902466 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a76 id: 1a76 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a76/nostruct-align/1a76.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a76/nostruct-align/1a76.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a76/nostruct-align/1a76.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30638/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.237427 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a78A id: 1a78A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a78A/nostruct-align/1a78A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a78A/nostruct-align/1a78A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a78A/nostruct-align/1a78A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8571/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.843506 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a79A id: 1a79A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a79A/nostruct-align/1a79A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a79A/nostruct-align/1a79A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a79A/nostruct-align/1a79A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14573/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.134399 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a7aA id: 1a7aA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a7aA/nostruct-align/1a7aA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a7aA/nostruct-align/1a7aA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a7aA/nostruct-align/1a7aA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10509/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -37.467346 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a7cA id: 1a7cA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a7cA/nostruct-align/1a7cA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a7cA/nostruct-align/1a7cA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a7cA/nostruct-align/1a7cA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24407/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.080322 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a7j id: 1a7j alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a7j/nostruct-align/1a7j.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a7j/nostruct-align/1a7j.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a7j/nostruct-align/1a7j.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6560/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.041382 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a7s id: 1a7s alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a7s/nostruct-align/1a7s.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a7s/nostruct-align/1a7s.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a7s/nostruct-align/1a7s.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-777/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.432373 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a7tA id: 1a7tA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a7tA/nostruct-align/1a7tA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a7tA/nostruct-align/1a7tA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a7tA/nostruct-align/1a7tA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20796/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.953369 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a7w id: 1a7w alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a7w/nostruct-align/1a7w.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a7w/nostruct-align/1a7w.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a7w/nostruct-align/1a7w.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8975/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.188354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a81A id: 1a81A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a81A/nostruct-align/1a81A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a81A/nostruct-align/1a81A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a81A/nostruct-align/1a81A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23648/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.322388 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a87 id: 1a87 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a87/nostruct-align/1a87.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a87/nostruct-align/1a87.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a87/nostruct-align/1a87.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30057/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.517395 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a88A id: 1a88A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a88A/nostruct-align/1a88A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a88A/nostruct-align/1a88A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a88A/nostruct-align/1a88A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31764/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.782349 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a8b id: 1a8b alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8b/nostruct-align/1a8b.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8b/nostruct-align/1a8b.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a8b/nostruct-align/1a8b.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9015/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.792419 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a8d id: 1a8d alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8d/nostruct-align/1a8d.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8d/nostruct-align/1a8d.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a8d/nostruct-align/1a8d.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25046/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.264404 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a8e id: 1a8e alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8e/nostruct-align/1a8e.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8e/nostruct-align/1a8e.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a8e/nostruct-align/1a8e.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28623/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.941467 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a8h id: 1a8h alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8h/nostruct-align/1a8h.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8h/nostruct-align/1a8h.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a8h/nostruct-align/1a8h.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30761/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.270386 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a8i id: 1a8i alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8i/nostruct-align/1a8i.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8i/nostruct-align/1a8i.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a8i/nostruct-align/1a8i.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29383/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.049377 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a8l id: 1a8l alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8l/nostruct-align/1a8l.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8l/nostruct-align/1a8l.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a8l/nostruct-align/1a8l.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13415/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.248413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a8o id: 1a8o alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8o/nostruct-align/1a8o.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8o/nostruct-align/1a8o.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a8o/nostruct-align/1a8o.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3381/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.520386 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a8q id: 1a8q alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8q/nostruct-align/1a8q.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8q/nostruct-align/1a8q.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a8q/nostruct-align/1a8q.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20865/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.438354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a8rA id: 1a8rA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8rA/nostruct-align/1a8rA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8rA/nostruct-align/1a8rA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a8rA/nostruct-align/1a8rA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29155/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.637390 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a8vA id: 1a8vA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8vA/nostruct-align/1a8vA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8vA/nostruct-align/1a8vA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a8vA/nostruct-align/1a8vA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13539/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.019409 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a8y id: 1a8y alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8y/nostruct-align/1a8y.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8y/nostruct-align/1a8y.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a8y/nostruct-align/1a8y.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25579/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.831421 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a91 id: 1a91 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a91/nostruct-align/1a91.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a91/nostruct-align/1a91.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a91/nostruct-align/1a91.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15708/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.919312 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a92A id: 1a92A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a92A/nostruct-align/1a92A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a92A/nostruct-align/1a92A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a92A/nostruct-align/1a92A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8692/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.482300 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a93A id: 1a93A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a93A/nostruct-align/1a93A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a93A/nostruct-align/1a93A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a93A/nostruct-align/1a93A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9725/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.135376 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a93B id: 1a93B alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a93B/nostruct-align/1a93B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a93B/nostruct-align/1a93B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a93B/nostruct-align/1a93B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14808/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.542358 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a9nA id: 1a9nA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a9nA/nostruct-align/1a9nA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a9nA/nostruct-align/1a9nA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a9nA/nostruct-align/1a9nA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2624/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.417358 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a9v id: 1a9v alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a9v/nostruct-align/1a9v.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a9v/nostruct-align/1a9v.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a9v/nostruct-align/1a9v.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23364/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.859375 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a9xA id: 1a9xA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a9xA/nostruct-align/1a9xA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a9xA/nostruct-align/1a9xA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a9xA/nostruct-align/1a9xA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2969/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.870483 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1a9xB id: 1a9xB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a9xB/nostruct-align/1a9xB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a9xB/nostruct-align/1a9xB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a9xB/nostruct-align/1a9xB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13555/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.115356 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aa0 id: 1aa0 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aa0/nostruct-align/1aa0.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aa0/nostruct-align/1aa0.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aa0/nostruct-align/1aa0.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5473/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.979431 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aa7A id: 1aa7A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aa7A/nostruct-align/1aa7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aa7A/nostruct-align/1aa7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aa7A/nostruct-align/1aa7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16917/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.649414 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aa8A id: 1aa8A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aa8A/nostruct-align/1aa8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aa8A/nostruct-align/1aa8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aa8A/nostruct-align/1aa8A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26608/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -19.438416 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aab id: 1aab alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aab/nostruct-align/1aab.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aab/nostruct-align/1aab.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aab/nostruct-align/1aab.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24719/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.889404 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aac id: 1aac alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aac/nostruct-align/1aac.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aac/nostruct-align/1aac.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aac/nostruct-align/1aac.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7660/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.389404 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aaf id: 1aaf alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aaf/nostruct-align/1aaf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aaf/nostruct-align/1aaf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aaf/nostruct-align/1aaf.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-9090/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.824341 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aaj id: 1aaj alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aaj/nostruct-align/1aaj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aaj/nostruct-align/1aaj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aaj/nostruct-align/1aaj.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-3219/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.487427 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aak id: 1aak alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aak/nostruct-align/1aak.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aak/nostruct-align/1aak.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aak/nostruct-align/1aak.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8716/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.969360 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aapA id: 1aapA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aapA/nostruct-align/1aapA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aapA/nostruct-align/1aapA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aapA/nostruct-align/1aapA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31177/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.993408 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aayA id: 1aayA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aayA/nostruct-align/1aayA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aayA/nostruct-align/1aayA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aayA/nostruct-align/1aayA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27222/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.647339 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ab3 id: 1ab3 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ab3/nostruct-align/1ab3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ab3/nostruct-align/1ab3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ab3/nostruct-align/1ab3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4560/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.943481 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ab4 id: 1ab4 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ab4/nostruct-align/1ab4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ab4/nostruct-align/1ab4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ab4/nostruct-align/1ab4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9185/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.442322 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ab8A id: 1ab8A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ab8A/nostruct-align/1ab8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ab8A/nostruct-align/1ab8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ab8A/nostruct-align/1ab8A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28896/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.900330 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aba id: 1aba alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aba/nostruct-align/1aba.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aba/nostruct-align/1aba.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aba/nostruct-align/1aba.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4506/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.548340 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aboA id: 1aboA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aboA/nostruct-align/1aboA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aboA/nostruct-align/1aboA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aboA/nostruct-align/1aboA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23663/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.091431 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1abrA id: 1abrA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1abrA/nostruct-align/1abrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1abrA/nostruct-align/1abrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1abrA/nostruct-align/1abrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15213/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.193481 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1abrB id: 1abrB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1abrB/nostruct-align/1abrB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1abrB/nostruct-align/1abrB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1abrB/nostruct-align/1abrB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12094/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.498413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1abrB_1 id: 1abrB_1 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1abrB_1/nostruct-align/1abrB_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1abrB_1/nostruct-align/1abrB_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1abrB_1/nostruct-align/1abrB_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8127/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.810425 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1abrB_2 id: 1abrB_2 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1abrB_2/nostruct-align/1abrB_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1abrB_2/nostruct-align/1abrB_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1abrB_2/nostruct-align/1abrB_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6930/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.608398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1abv id: 1abv alignment found: /projects/compbio/experiments/models.97/pdb/1a/1abv/nostruct-align/1abv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1abv/nostruct-align/1abv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1abv/nostruct-align/1abv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4857/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.957397 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1abwA id: 1abwA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1abwA/nostruct-align/1abwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1abwA/nostruct-align/1abwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1abwA/nostruct-align/1abwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5747/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.149292 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1abz id: 1abz alignment found: /projects/compbio/experiments/models.97/pdb/1a/1abz/nostruct-align/1abz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1abz/nostruct-align/1abz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1abz/nostruct-align/1abz.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31148/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.933472 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ac5 id: 1ac5 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ac5/nostruct-align/1ac5.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ac5/nostruct-align/1ac5.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ac5/nostruct-align/1ac5.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14820/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.343384 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aca id: 1aca alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aca/nostruct-align/1aca.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aca/nostruct-align/1aca.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aca/nostruct-align/1aca.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31137/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.435425 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1acc id: 1acc alignment found: /projects/compbio/experiments/models.97/pdb/1a/1acc/nostruct-align/1acc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1acc/nostruct-align/1acc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1acc/nostruct-align/1acc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7992/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.299438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1acf id: 1acf alignment found: /projects/compbio/experiments/models.97/pdb/1a/1acf/nostruct-align/1acf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1acf/nostruct-align/1acf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1acf/nostruct-align/1acf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24789/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.407349 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aco_1 id: 1aco_1 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1aco_1/nostruct-align/1aco_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1aco_1/nostruct-align/1aco_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1aco_1/nostruct-align/1aco_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31243/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.186340 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aco_2 id: 1aco_2 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1aco_2/nostruct-align/1aco_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1aco_2/nostruct-align/1aco_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1aco_2/nostruct-align/1aco_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19094/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.076416 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1acp id: 1acp alignment found: /projects/compbio/experiments/models.97/pdb/1a/1acp/nostruct-align/1acp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1acp/nostruct-align/1acp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1acp/nostruct-align/1acp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16484/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.511475 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1acz id: 1acz alignment found: /projects/compbio/experiments/models.97/pdb/1a/1acz/nostruct-align/1acz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1acz/nostruct-align/1acz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1acz/nostruct-align/1acz.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25009/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.346436 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ad2 id: 1ad2 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ad2/nostruct-align/1ad2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ad2/nostruct-align/1ad2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ad2/nostruct-align/1ad2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32054/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.088440 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ad3A id: 1ad3A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ad3A/nostruct-align/1ad3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ad3A/nostruct-align/1ad3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ad3A/nostruct-align/1ad3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14182/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.127380 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ad6 id: 1ad6 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ad6/nostruct-align/1ad6.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ad6/nostruct-align/1ad6.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ad6/nostruct-align/1ad6.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13262/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.327393 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1add id: 1add alignment found: /projects/compbio/experiments/models.97/pdb/1a/1add/nostruct-align/1add.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1add/nostruct-align/1add.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1add/nostruct-align/1add.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26170/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.589355 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1adeA id: 1adeA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1adeA/nostruct-align/1adeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1adeA/nostruct-align/1adeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1adeA/nostruct-align/1adeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24933/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.714417 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1adjA id: 1adjA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1adjA/nostruct-align/1adjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1adjA/nostruct-align/1adjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1adjA/nostruct-align/1adjA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8885/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.684387 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1adn id: 1adn alignment found: /projects/compbio/experiments/models.97/pdb/1a/1adn/nostruct-align/1adn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1adn/nostruct-align/1adn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1adn/nostruct-align/1adn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2383/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.225403 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1adoA id: 1adoA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1adoA/nostruct-align/1adoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1adoA/nostruct-align/1adoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1adoA/nostruct-align/1adoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10218/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.488403 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1adr id: 1adr alignment found: /projects/compbio/experiments/models.97/pdb/1a/1adr/nostruct-align/1adr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1adr/nostruct-align/1adr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1adr/nostruct-align/1adr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20841/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.077393 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ads id: 1ads alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ads/nostruct-align/1ads.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ads/nostruct-align/1ads.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ads/nostruct-align/1ads.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-2148/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.954468 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1adx id: 1adx alignment found: /projects/compbio/experiments/models.97/pdb/1a/1adx/nostruct-align/1adx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1adx/nostruct-align/1adx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1adx/nostruct-align/1adx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30236/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.993469 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ae9A id: 1ae9A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ae9A/nostruct-align/1ae9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ae9A/nostruct-align/1ae9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ae9A/nostruct-align/1ae9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29329/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.949463 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aep id: 1aep alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aep/nostruct-align/1aep.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aep/nostruct-align/1aep.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aep/nostruct-align/1aep.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15732/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.911377 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aerA id: 1aerA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aerA/nostruct-align/1aerA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aerA/nostruct-align/1aerA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aerA/nostruct-align/1aerA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26968/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.649353 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1af7 id: 1af7 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1af7/nostruct-align/1af7.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1af7/nostruct-align/1af7.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1af7/nostruct-align/1af7.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20136/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.764404 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1afoA id: 1afoA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1afoA/nostruct-align/1afoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1afoA/nostruct-align/1afoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1afoA/nostruct-align/1afoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23651/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.892334 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1afp id: 1afp alignment found: /projects/compbio/experiments/models.97/pdb/1a/1afp/nostruct-align/1afp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1afp/nostruct-align/1afp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1afp/nostruct-align/1afp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21088/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.298462 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1afrA id: 1afrA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1afrA/nostruct-align/1afrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1afrA/nostruct-align/1afrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1afrA/nostruct-align/1afrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25653/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.119446 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1afwA id: 1afwA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1afwA/nostruct-align/1afwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1afwA/nostruct-align/1afwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1afwA/nostruct-align/1afwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8008/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.839417 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ag4 id: 1ag4 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ag4/nostruct-align/1ag4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ag4/nostruct-align/1ag4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ag4/nostruct-align/1ag4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19733/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.647461 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ag7 id: 1ag7 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ag7/nostruct-align/1ag7.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ag7/nostruct-align/1ag7.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ag7/nostruct-align/1ag7.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21759/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.503357 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ag9A id: 1ag9A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ag9A/nostruct-align/1ag9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ag9A/nostruct-align/1ag9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ag9A/nostruct-align/1ag9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3371/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.370361 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1agdA id: 1agdA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agdA/nostruct-align/1agdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agdA/nostruct-align/1agdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1agdA/nostruct-align/1agdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5586/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.942383 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1agdB id: 1agdB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agdB/nostruct-align/1agdB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agdB/nostruct-align/1agdB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1agdB/nostruct-align/1agdB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30624/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.386353 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1agg id: 1agg alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agg/nostruct-align/1agg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agg/nostruct-align/1agg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1agg/nostruct-align/1agg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22157/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.346436 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1agjA id: 1agjA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agjA/nostruct-align/1agjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agjA/nostruct-align/1agjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1agjA/nostruct-align/1agjA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17818/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.875366 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1agnA id: 1agnA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agnA/nostruct-align/1agnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agnA/nostruct-align/1agnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1agnA/nostruct-align/1agnA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28555/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -240.611389 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1agqA id: 1agqA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agqA/nostruct-align/1agqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agqA/nostruct-align/1agqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1agqA/nostruct-align/1agqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8733/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.907471 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1agqD id: 1agqD alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agqD/nostruct-align/1agqD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agqD/nostruct-align/1agqD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1agqD/nostruct-align/1agqD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3493/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.090454 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1agrE id: 1agrE alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agrE/nostruct-align/1agrE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agrE/nostruct-align/1agrE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1agrE/nostruct-align/1agrE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27171/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.204346 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1agrH id: 1agrH alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agrH/nostruct-align/1agrH.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agrH/nostruct-align/1agrH.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1agrH/nostruct-align/1agrH.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17041/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.036377 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1agx id: 1agx alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agx/nostruct-align/1agx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agx/nostruct-align/1agx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1agx/nostruct-align/1agx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25649/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.106445 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ah1 id: 1ah1 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ah1/nostruct-align/1ah1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ah1/nostruct-align/1ah1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ah1/nostruct-align/1ah1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29535/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.282471 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ah7 id: 1ah7 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ah7/nostruct-align/1ah7.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ah7/nostruct-align/1ah7.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ah7/nostruct-align/1ah7.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21959/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.974365 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ah9 id: 1ah9 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ah9/nostruct-align/1ah9.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ah9/nostruct-align/1ah9.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ah9/nostruct-align/1ah9.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24408/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.475342 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ahjB id: 1ahjB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ahjB/nostruct-align/1ahjB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ahjB/nostruct-align/1ahjB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ahjB/nostruct-align/1ahjB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25414/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.159424 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ahl id: 1ahl alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ahl/nostruct-align/1ahl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ahl/nostruct-align/1ahl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ahl/nostruct-align/1ahl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29540/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.652405 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ahm id: 1ahm alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ahm/nostruct-align/1ahm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ahm/nostruct-align/1ahm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ahm/nostruct-align/1ahm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16906/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.274475 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aho id: 1aho alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aho/nostruct-align/1aho.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aho/nostruct-align/1aho.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aho/nostruct-align/1aho.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11848/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.464355 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ahpA id: 1ahpA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ahpA/nostruct-align/1ahpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ahpA/nostruct-align/1ahpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ahpA/nostruct-align/1ahpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27036/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.281372 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ahsA id: 1ahsA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ahsA/nostruct-align/1ahsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ahsA/nostruct-align/1ahsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ahsA/nostruct-align/1ahsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7494/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.514343 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ahtH id: 1ahtH alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ahtH/nostruct-align/1ahtH.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ahtH/nostruct-align/1ahtH.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ahtH/nostruct-align/1ahtH.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23056/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.737427 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ahtL id: 1ahtL alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ahtL/nostruct-align/1ahtL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ahtL/nostruct-align/1ahtL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ahtL/nostruct-align/1ahtL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6916/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.201416 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ai7A id: 1ai7A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ai7A/nostruct-align/1ai7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ai7A/nostruct-align/1ai7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ai7A/nostruct-align/1ai7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32352/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.178467 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aie id: 1aie alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aie/nostruct-align/1aie.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aie/nostruct-align/1aie.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aie/nostruct-align/1aie.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1517/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.414429 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aihA id: 1aihA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aihA/nostruct-align/1aihA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aihA/nostruct-align/1aihA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aihA/nostruct-align/1aihA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28399/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.254395 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aijL id: 1aijL alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aijL/nostruct-align/1aijL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aijL/nostruct-align/1aijL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aijL/nostruct-align/1aijL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23707/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.708496 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aikC id: 1aikC alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aikC/nostruct-align/1aikC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aikC/nostruct-align/1aikC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aikC/nostruct-align/1aikC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30422/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.359375 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aikN id: 1aikN alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aikN/nostruct-align/1aikN.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aikN/nostruct-align/1aikN.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aikN/nostruct-align/1aikN.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30589/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.522339 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ail id: 1ail alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ail/nostruct-align/1ail.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ail/nostruct-align/1ail.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ail/nostruct-align/1ail.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5810/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.821411 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aim id: 1aim alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aim/nostruct-align/1aim.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aim/nostruct-align/1aim.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aim/nostruct-align/1aim.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16883/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.249390 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aipE id: 1aipE alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aipE/nostruct-align/1aipE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aipE/nostruct-align/1aipE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aipE/nostruct-align/1aipE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26096/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.677429 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1air id: 1air alignment found: /projects/compbio/experiments/models.97/pdb/1a/1air/nostruct-align/1air.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1air/nostruct-align/1air.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1air/nostruct-align/1air.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29188/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.269470 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aisB id: 1aisB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aisB/nostruct-align/1aisB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aisB/nostruct-align/1aisB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aisB/nostruct-align/1aisB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1451/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.892395 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aiu id: 1aiu alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aiu/nostruct-align/1aiu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aiu/nostruct-align/1aiu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aiu/nostruct-align/1aiu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28309/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.566406 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aiw id: 1aiw alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aiw/nostruct-align/1aiw.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aiw/nostruct-align/1aiw.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aiw/nostruct-align/1aiw.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15691/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.222412 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aizA id: 1aizA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aizA/nostruct-align/1aizA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aizA/nostruct-align/1aizA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aizA/nostruct-align/1aizA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16671/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.919434 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aj2 id: 1aj2 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aj2/nostruct-align/1aj2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aj2/nostruct-align/1aj2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aj2/nostruct-align/1aj2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15317/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.576355 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aj3 id: 1aj3 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aj3/nostruct-align/1aj3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aj3/nostruct-align/1aj3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aj3/nostruct-align/1aj3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-581/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -20.365417 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aj6 id: 1aj6 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aj6/nostruct-align/1aj6.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aj6/nostruct-align/1aj6.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aj6/nostruct-align/1aj6.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31669/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.946350 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aj8A id: 1aj8A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aj8A/nostruct-align/1aj8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aj8A/nostruct-align/1aj8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aj8A/nostruct-align/1aj8A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24369/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.802429 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ajj id: 1ajj alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ajj/nostruct-align/1ajj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ajj/nostruct-align/1ajj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ajj/nostruct-align/1ajj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-444/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.494385 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ajqA id: 1ajqA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ajqA/nostruct-align/1ajqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ajqA/nostruct-align/1ajqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ajqA/nostruct-align/1ajqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24991/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.520386 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ajqB id: 1ajqB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ajqB/nostruct-align/1ajqB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ajqB/nostruct-align/1ajqB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ajqB/nostruct-align/1ajqB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5688/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.111450 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ajsA id: 1ajsA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ajsA/nostruct-align/1ajsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ajsA/nostruct-align/1ajsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ajsA/nostruct-align/1ajsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19311/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.197388 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ajyA id: 1ajyA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ajyA/nostruct-align/1ajyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ajyA/nostruct-align/1ajyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ajyA/nostruct-align/1ajyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13446/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.259399 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ak0 id: 1ak0 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ak0/nostruct-align/1ak0.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ak0/nostruct-align/1ak0.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ak0/nostruct-align/1ak0.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3157/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.097412 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ak1 id: 1ak1 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ak1/nostruct-align/1ak1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ak1/nostruct-align/1ak1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ak1/nostruct-align/1ak1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5422/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.325317 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ak4C id: 1ak4C alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ak4C/nostruct-align/1ak4C.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ak4C/nostruct-align/1ak4C.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ak4C/nostruct-align/1ak4C.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6767/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.529419 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ak5 id: 1ak5 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ak5/nostruct-align/1ak5.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ak5/nostruct-align/1ak5.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ak5/nostruct-align/1ak5.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11425/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.745422 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ak7 id: 1ak7 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ak7/nostruct-align/1ak7.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ak7/nostruct-align/1ak7.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ak7/nostruct-align/1ak7.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8549/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.811401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1akeA id: 1akeA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1akeA/nostruct-align/1akeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1akeA/nostruct-align/1akeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1akeA/nostruct-align/1akeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24081/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.205444 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1akhA id: 1akhA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1akhA/nostruct-align/1akhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1akhA/nostruct-align/1akhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1akhA/nostruct-align/1akhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21565/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.616333 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1akhB id: 1akhB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1akhB/nostruct-align/1akhB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1akhB/nostruct-align/1akhB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1akhB/nostruct-align/1akhB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7162/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.045410 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ako id: 1ako alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ako/nostruct-align/1ako.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ako/nostruct-align/1ako.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ako/nostruct-align/1ako.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9523/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.413330 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1akr id: 1akr alignment found: /projects/compbio/experiments/models.97/pdb/1a/1akr/nostruct-align/1akr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1akr/nostruct-align/1akr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1akr/nostruct-align/1akr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12514/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.429443 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aky id: 1aky alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aky/nostruct-align/1aky.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aky/nostruct-align/1aky.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aky/nostruct-align/1aky.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file ./tmp/tmp-build-weighted-model-titanic-29691/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.707397 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1akz id: 1akz alignment found: /projects/compbio/experiments/models.97/pdb/1a/1akz/nostruct-align/1akz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1akz/nostruct-align/1akz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1akz/nostruct-align/1akz.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19232/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.345398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1al3 id: 1al3 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1al3/nostruct-align/1al3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1al3/nostruct-align/1al3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1al3/nostruct-align/1al3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15289/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.127319 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1alkA id: 1alkA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1alkA/nostruct-align/1alkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1alkA/nostruct-align/1alkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1alkA/nostruct-align/1alkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32299/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.475464 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1alo id: 1alo alignment found: /projects/compbio/experiments/models.97/pdb/1a/1alo/nostruct-align/1alo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1alo/nostruct-align/1alo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1alo/nostruct-align/1alo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-11562/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.252441 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1alq id: 1alq alignment found: /projects/compbio/experiments/models.97/pdb/1a/1alq/nostruct-align/1alq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1alq/nostruct-align/1alq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1alq/nostruct-align/1alq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23374/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.588501 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1alu id: 1alu alignment found: /projects/compbio/experiments/models.97/pdb/1a/1alu/nostruct-align/1alu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1alu/nostruct-align/1alu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1alu/nostruct-align/1alu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-22707/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.258423 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1alvA id: 1alvA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1alvA/nostruct-align/1alvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1alvA/nostruct-align/1alvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1alvA/nostruct-align/1alvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-6305/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.530396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aly id: 1aly alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aly/nostruct-align/1aly.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aly/nostruct-align/1aly.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aly/nostruct-align/1aly.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-29754/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.322449 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1am2 id: 1am2 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1am2/nostruct-align/1am2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1am2/nostruct-align/1am2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1am2/nostruct-align/1am2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-12225/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.426392 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1am7A id: 1am7A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1am7A/nostruct-align/1am7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1am7A/nostruct-align/1am7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1am7A/nostruct-align/1am7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-3665/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.736450 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1am9A id: 1am9A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1am9A/nostruct-align/1am9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1am9A/nostruct-align/1am9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1am9A/nostruct-align/1am9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23734/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.382324 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1amf id: 1amf alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amf/nostruct-align/1amf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amf/nostruct-align/1amf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1amf/nostruct-align/1amf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28983/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.501465 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1amg_1 id: 1amg_1 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1amg_1/nostruct-align/1amg_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1amg_1/nostruct-align/1amg_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1amg_1/nostruct-align/1amg_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13304/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.797424 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1amg_2 id: 1amg_2 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1amg_2/nostruct-align/1amg_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1amg_2/nostruct-align/1amg_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1amg_2/nostruct-align/1amg_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22758/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.646362 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1amj id: 1amj alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amj/nostruct-align/1amj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amj/nostruct-align/1amj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1amj/nostruct-align/1amj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13710/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.497437 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1amk id: 1amk alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amk/nostruct-align/1amk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amk/nostruct-align/1amk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1amk/nostruct-align/1amk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29810/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.313416 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aml id: 1aml alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aml/nostruct-align/1aml.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aml/nostruct-align/1aml.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aml/nostruct-align/1aml.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13673/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.057373 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1amm id: 1amm alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amm/nostruct-align/1amm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amm/nostruct-align/1amm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1amm/nostruct-align/1amm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32581/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.110352 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1amoA id: 1amoA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amoA/nostruct-align/1amoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amoA/nostruct-align/1amoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1amoA/nostruct-align/1amoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25178/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.704468 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1amp id: 1amp alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amp/nostruct-align/1amp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amp/nostruct-align/1amp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1amp/nostruct-align/1amp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26778/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.167358 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1amtA id: 1amtA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amtA/nostruct-align/1amtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amtA/nostruct-align/1amtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1amtA/nostruct-align/1amtA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23943/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.687439 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1amuA id: 1amuA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amuA/nostruct-align/1amuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amuA/nostruct-align/1amuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1amuA/nostruct-align/1amuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-2243/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.126343 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1amx id: 1amx alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amx/nostruct-align/1amx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amx/nostruct-align/1amx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1amx/nostruct-align/1amx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-16879/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.010376 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1amy_1 id: 1amy_1 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1amy_1/nostruct-align/1amy_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1amy_1/nostruct-align/1amy_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1amy_1/nostruct-align/1amy_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24652/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.762451 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1amy_2 id: 1amy_2 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1amy_2/nostruct-align/1amy_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1amy_2/nostruct-align/1amy_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1amy_2/nostruct-align/1amy_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12341/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.355469 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1an2A id: 1an2A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1an2A/nostruct-align/1an2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1an2A/nostruct-align/1an2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1an2A/nostruct-align/1an2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13547/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.815308 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1an4A id: 1an4A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1an4A/nostruct-align/1an4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1an4A/nostruct-align/1an4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1an4A/nostruct-align/1an4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11486/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.988403 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1an7A id: 1an7A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1an7A/nostruct-align/1an7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1an7A/nostruct-align/1an7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1an7A/nostruct-align/1an7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25277/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.898315 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1an8 id: 1an8 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1an8/nostruct-align/1an8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1an8/nostruct-align/1an8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1an8/nostruct-align/1an8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22376/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.206421 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1an9A id: 1an9A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1an9A/nostruct-align/1an9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1an9A/nostruct-align/1an9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1an9A/nostruct-align/1an9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18791/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -20.926331 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1anf id: 1anf alignment found: /projects/compbio/experiments/models.97/pdb/1a/1anf/nostruct-align/1anf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1anf/nostruct-align/1anf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1anf/nostruct-align/1anf.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22430/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.315430 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ans id: 1ans alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ans/nostruct-align/1ans.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ans/nostruct-align/1ans.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ans/nostruct-align/1ans.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27342/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.962463 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1anv id: 1anv alignment found: /projects/compbio/experiments/models.97/pdb/1a/1anv/nostruct-align/1anv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1anv/nostruct-align/1anv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1anv/nostruct-align/1anv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20232/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.542419 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ao6A id: 1ao6A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ao6A/nostruct-align/1ao6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ao6A/nostruct-align/1ao6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ao6A/nostruct-align/1ao6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8562/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.736389 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aoa id: 1aoa alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoa/nostruct-align/1aoa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoa/nostruct-align/1aoa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoa/nostruct-align/1aoa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19064/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.116455 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aocA id: 1aocA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aocA/nostruct-align/1aocA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aocA/nostruct-align/1aocA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aocA/nostruct-align/1aocA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10576/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.929382 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aoeA id: 1aoeA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoeA/nostruct-align/1aoeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoeA/nostruct-align/1aoeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoeA/nostruct-align/1aoeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19302/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.588379 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aohA id: 1aohA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aohA/nostruct-align/1aohA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aohA/nostruct-align/1aohA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aohA/nostruct-align/1aohA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10698/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.142456 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aohB id: 1aohB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aohB/nostruct-align/1aohB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aohB/nostruct-align/1aohB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aohB/nostruct-align/1aohB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21992/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.099365 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aoiA id: 1aoiA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoiA/nostruct-align/1aoiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoiA/nostruct-align/1aoiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoiA/nostruct-align/1aoiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21544/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.975464 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aoiB id: 1aoiB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoiB/nostruct-align/1aoiB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoiB/nostruct-align/1aoiB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoiB/nostruct-align/1aoiB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14525/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.234375 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aoiC id: 1aoiC alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoiC/nostruct-align/1aoiC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoiC/nostruct-align/1aoiC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoiC/nostruct-align/1aoiC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32287/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.085449 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aoiD id: 1aoiD alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoiD/nostruct-align/1aoiD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoiD/nostruct-align/1aoiD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoiD/nostruct-align/1aoiD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31992/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.066406 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aoiF id: 1aoiF alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoiF/nostruct-align/1aoiF.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoiF/nostruct-align/1aoiF.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoiF/nostruct-align/1aoiF.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5590/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.721436 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aoiG id: 1aoiG alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoiG/nostruct-align/1aoiG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoiG/nostruct-align/1aoiG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoiG/nostruct-align/1aoiG.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18841/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.872437 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aojA id: 1aojA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aojA/nostruct-align/1aojA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aojA/nostruct-align/1aojA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aojA/nostruct-align/1aojA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30331/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.811401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aol id: 1aol alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aol/nostruct-align/1aol.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aol/nostruct-align/1aol.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aol/nostruct-align/1aol.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30316/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.883423 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aoo id: 1aoo alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoo/nostruct-align/1aoo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoo/nostruct-align/1aoo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoo/nostruct-align/1aoo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17788/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.941406 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aop id: 1aop alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aop/nostruct-align/1aop.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aop/nostruct-align/1aop.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aop/nostruct-align/1aop.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26307/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.884399 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aoqA id: 1aoqA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoqA/nostruct-align/1aoqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoqA/nostruct-align/1aoqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoqA/nostruct-align/1aoqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3544/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.734436 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aorA id: 1aorA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aorA/nostruct-align/1aorA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aorA/nostruct-align/1aorA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aorA/nostruct-align/1aorA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11103/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.052429 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aorA_1 id: 1aorA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1aorA_1/nostruct-align/1aorA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1aorA_1/nostruct-align/1aorA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1aorA_1/nostruct-align/1aorA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20749/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.622375 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aorA_2 id: 1aorA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1aorA_2/nostruct-align/1aorA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1aorA_2/nostruct-align/1aorA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1aorA_2/nostruct-align/1aorA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1404/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.298401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aoxA id: 1aoxA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoxA/nostruct-align/1aoxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoxA/nostruct-align/1aoxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoxA/nostruct-align/1aoxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13884/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.881470 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aoy id: 1aoy alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoy/nostruct-align/1aoy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoy/nostruct-align/1aoy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoy/nostruct-align/1aoy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15570/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.697449 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aozA id: 1aozA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aozA/nostruct-align/1aozA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aozA/nostruct-align/1aozA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aozA/nostruct-align/1aozA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12490/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.082397 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aozA_1 id: 1aozA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1aozA_1/nostruct-align/1aozA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1aozA_1/nostruct-align/1aozA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1aozA_1/nostruct-align/1aozA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16410/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.993408 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aozA_2 id: 1aozA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1aozA_2/nostruct-align/1aozA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1aozA_2/nostruct-align/1aozA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1aozA_2/nostruct-align/1aozA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9900/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.744507 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aozA_3 id: 1aozA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1aozA_3/nostruct-align/1aozA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1aozA_3/nostruct-align/1aozA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1aozA_3/nostruct-align/1aozA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-779/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.177368 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ap0 id: 1ap0 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ap0/nostruct-align/1ap0.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ap0/nostruct-align/1ap0.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ap0/nostruct-align/1ap0.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6126/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.324341 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ap7 id: 1ap7 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ap7/nostruct-align/1ap7.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ap7/nostruct-align/1ap7.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ap7/nostruct-align/1ap7.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6344/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.428467 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ap8 id: 1ap8 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ap8/nostruct-align/1ap8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ap8/nostruct-align/1ap8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ap8/nostruct-align/1ap8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30421/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.904419 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1apa id: 1apa alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apa/nostruct-align/1apa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apa/nostruct-align/1apa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1apa/nostruct-align/1apa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file ./tmp/tmp-build-weighted-model-titanic-29216/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.700439 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1apf id: 1apf alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apf/nostruct-align/1apf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apf/nostruct-align/1apf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1apf/nostruct-align/1apf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22983/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.587341 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1apj id: 1apj alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apj/nostruct-align/1apj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apj/nostruct-align/1apj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1apj/nostruct-align/1apj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15916/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.455383 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1apmE id: 1apmE alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apmE/nostruct-align/1apmE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apmE/nostruct-align/1apmE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1apmE/nostruct-align/1apmE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4239/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.349365 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1apmI id: 1apmI alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apmI/nostruct-align/1apmI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apmI/nostruct-align/1apmI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1apmI/nostruct-align/1apmI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11901/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.376465 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1apo id: 1apo alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apo/nostruct-align/1apo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apo/nostruct-align/1apo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1apo/nostruct-align/1apo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31402/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.269409 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1apq id: 1apq alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apq/nostruct-align/1apq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apq/nostruct-align/1apq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1apq/nostruct-align/1apq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32579/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.750366 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aps id: 1aps alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aps/nostruct-align/1aps.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aps/nostruct-align/1aps.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aps/nostruct-align/1aps.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-26746/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.786377 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1apyA id: 1apyA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apyA/nostruct-align/1apyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apyA/nostruct-align/1apyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1apyA/nostruct-align/1apyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21837/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.358398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1apyB id: 1apyB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apyB/nostruct-align/1apyB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apyB/nostruct-align/1apyB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1apyB/nostruct-align/1apyB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31186/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.751343 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aq0A id: 1aq0A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aq0A/nostruct-align/1aq0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aq0A/nostruct-align/1aq0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aq0A/nostruct-align/1aq0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20400/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.113464 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aq5A id: 1aq5A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aq5A/nostruct-align/1aq5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aq5A/nostruct-align/1aq5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aq5A/nostruct-align/1aq5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10169/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.593445 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aq6A id: 1aq6A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aq6A/nostruct-align/1aq6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aq6A/nostruct-align/1aq6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aq6A/nostruct-align/1aq6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7679/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.770447 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aqb id: 1aqb alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aqb/nostruct-align/1aqb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aqb/nostruct-align/1aqb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aqb/nostruct-align/1aqb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4788/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.589355 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aqm id: 1aqm alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aqm/nostruct-align/1aqm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aqm/nostruct-align/1aqm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aqm/nostruct-align/1aqm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29488/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.452515 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aqt id: 1aqt alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aqt/nostruct-align/1aqt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aqt/nostruct-align/1aqt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aqt/nostruct-align/1aqt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25645/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.764404 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aquA id: 1aquA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aquA/nostruct-align/1aquA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aquA/nostruct-align/1aquA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aquA/nostruct-align/1aquA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26768/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.725342 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aqzA id: 1aqzA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aqzA/nostruct-align/1aqzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aqzA/nostruct-align/1aqzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aqzA/nostruct-align/1aqzA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15067/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.804443 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aqzB id: 1aqzB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aqzB/nostruct-align/1aqzB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aqzB/nostruct-align/1aqzB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aqzB/nostruct-align/1aqzB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6293/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.800415 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ar0A id: 1ar0A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ar0A/nostruct-align/1ar0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ar0A/nostruct-align/1ar0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ar0A/nostruct-align/1ar0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13965/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.788452 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1arb id: 1arb alignment found: /projects/compbio/experiments/models.97/pdb/1a/1arb/nostruct-align/1arb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1arb/nostruct-align/1arb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1arb/nostruct-align/1arb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25982/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.499390 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ard id: 1ard alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ard/nostruct-align/1ard.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ard/nostruct-align/1ard.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ard/nostruct-align/1ard.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16080/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.287354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ark id: 1ark alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ark/nostruct-align/1ark.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ark/nostruct-align/1ark.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ark/nostruct-align/1ark.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23529/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.613342 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1art id: 1art alignment found: /projects/compbio/experiments/models.97/pdb/1a/1art/nostruct-align/1art.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1art/nostruct-align/1art.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1art/nostruct-align/1art.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4132/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.560364 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aru id: 1aru alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aru/nostruct-align/1aru.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aru/nostruct-align/1aru.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aru/nostruct-align/1aru.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32250/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.321411 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1arv id: 1arv alignment found: /projects/compbio/experiments/models.97/pdb/1a/1arv/nostruct-align/1arv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1arv/nostruct-align/1arv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1arv/nostruct-align/1arv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10937/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.321411 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1arzC id: 1arzC alignment found: /projects/compbio/experiments/models.97/pdb/1a/1arzC/nostruct-align/1arzC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1arzC/nostruct-align/1arzC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1arzC/nostruct-align/1arzC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32436/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.746338 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1as4B id: 1as4B alignment found: /projects/compbio/experiments/models.97/pdb/1a/1as4B/nostruct-align/1as4B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1as4B/nostruct-align/1as4B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1as4B/nostruct-align/1as4B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32617/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.403442 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1as8A id: 1as8A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1as8A/nostruct-align/1as8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1as8A/nostruct-align/1as8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1as8A/nostruct-align/1as8A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23131/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.213379 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ash id: 1ash alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ash/nostruct-align/1ash.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ash/nostruct-align/1ash.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ash/nostruct-align/1ash.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8232/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.537354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ass id: 1ass alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ass/nostruct-align/1ass.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ass/nostruct-align/1ass.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ass/nostruct-align/1ass.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16565/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.716431 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ast id: 1ast alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ast/nostruct-align/1ast.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ast/nostruct-align/1ast.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ast/nostruct-align/1ast.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19215/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.815430 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1asu id: 1asu alignment found: /projects/compbio/experiments/models.97/pdb/1a/1asu/nostruct-align/1asu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1asu/nostruct-align/1asu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1asu/nostruct-align/1asu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7184/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.533447 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1asx id: 1asx alignment found: /projects/compbio/experiments/models.97/pdb/1a/1asx/nostruct-align/1asx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1asx/nostruct-align/1asx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1asx/nostruct-align/1asx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1416/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.392395 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1asyA id: 1asyA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1asyA/nostruct-align/1asyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1asyA/nostruct-align/1asyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1asyA/nostruct-align/1asyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32595/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.237427 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1asyA_1 id: 1asyA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1asyA_1/nostruct-align/1asyA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1asyA_1/nostruct-align/1asyA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1asyA_1/nostruct-align/1asyA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4662/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.243408 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1asyA_2 id: 1asyA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1asyA_2/nostruct-align/1asyA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1asyA_2/nostruct-align/1asyA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1asyA_2/nostruct-align/1asyA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30619/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.228516 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aszB id: 1aszB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aszB/nostruct-align/1aszB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aszB/nostruct-align/1aszB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aszB/nostruct-align/1aszB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9904/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.246460 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1at0 id: 1at0 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1at0/nostruct-align/1at0.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1at0/nostruct-align/1at0.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1at0/nostruct-align/1at0.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30016/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.790405 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1at3A id: 1at3A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1at3A/nostruct-align/1at3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1at3A/nostruct-align/1at3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1at3A/nostruct-align/1at3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24313/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.744446 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ata id: 1ata alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ata/nostruct-align/1ata.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ata/nostruct-align/1ata.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ata/nostruct-align/1ata.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18154/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.122437 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1atg id: 1atg alignment found: /projects/compbio/experiments/models.97/pdb/1a/1atg/nostruct-align/1atg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1atg/nostruct-align/1atg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1atg/nostruct-align/1atg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2665/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.383423 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1atiA id: 1atiA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1atiA/nostruct-align/1atiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1atiA/nostruct-align/1atiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1atiA/nostruct-align/1atiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8065/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.541321 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1atiB id: 1atiB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1atiB/nostruct-align/1atiB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1atiB/nostruct-align/1atiB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1atiB/nostruct-align/1atiB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1866/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.355408 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1atlA id: 1atlA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1atlA/nostruct-align/1atlA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1atlA/nostruct-align/1atlA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1atlA/nostruct-align/1atlA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30665/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.514404 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1atx id: 1atx alignment found: /projects/compbio/experiments/models.97/pdb/1a/1atx/nostruct-align/1atx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1atx/nostruct-align/1atx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1atx/nostruct-align/1atx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8668/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.519409 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aty id: 1aty alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aty/nostruct-align/1aty.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aty/nostruct-align/1aty.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aty/nostruct-align/1aty.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10408/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.147339 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1atzA id: 1atzA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1atzA/nostruct-align/1atzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1atzA/nostruct-align/1atzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1atzA/nostruct-align/1atzA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1233/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.912354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1atzB id: 1atzB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1atzB/nostruct-align/1atzB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1atzB/nostruct-align/1atzB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1atzB/nostruct-align/1atzB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15897/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.335388 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1au7A id: 1au7A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1au7A/nostruct-align/1au7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1au7A/nostruct-align/1au7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1au7A/nostruct-align/1au7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9876/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.645386 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aua id: 1aua alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aua/nostruct-align/1aua.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aua/nostruct-align/1aua.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aua/nostruct-align/1aua.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1107/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.712402 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aub id: 1aub alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aub/nostruct-align/1aub.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aub/nostruct-align/1aub.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aub/nostruct-align/1aub.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18190/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.231323 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1augA id: 1augA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1augA/nostruct-align/1augA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1augA/nostruct-align/1augA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1augA/nostruct-align/1augA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11823/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.973450 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1auiA id: 1auiA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auiA/nostruct-align/1auiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auiA/nostruct-align/1auiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1auiA/nostruct-align/1auiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31186/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.686401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1auiB id: 1auiB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auiB/nostruct-align/1auiB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auiB/nostruct-align/1auiB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1auiB/nostruct-align/1auiB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18755/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.469360 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1auk id: 1auk alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auk/nostruct-align/1auk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auk/nostruct-align/1auk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1auk/nostruct-align/1auk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25173/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.557373 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1auoA id: 1auoA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auoA/nostruct-align/1auoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auoA/nostruct-align/1auoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1auoA/nostruct-align/1auoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22207/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.837402 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1auq id: 1auq alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auq/nostruct-align/1auq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auq/nostruct-align/1auq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1auq/nostruct-align/1auq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22732/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.800415 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aurA id: 1aurA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aurA/nostruct-align/1aurA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aurA/nostruct-align/1aurA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aurA/nostruct-align/1aurA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14781/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.562378 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1auuA id: 1auuA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auuA/nostruct-align/1auuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auuA/nostruct-align/1auuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1auuA/nostruct-align/1auuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28964/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.726440 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1auvA id: 1auvA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auvA/nostruct-align/1auvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auvA/nostruct-align/1auvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1auvA/nostruct-align/1auvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21108/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.886353 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1auwA id: 1auwA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auwA/nostruct-align/1auwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auwA/nostruct-align/1auwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1auwA/nostruct-align/1auwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27687/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.490356 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1auyA id: 1auyA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auyA/nostruct-align/1auyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auyA/nostruct-align/1auyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1auyA/nostruct-align/1auyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27990/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.959412 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1auz id: 1auz alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auz/nostruct-align/1auz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auz/nostruct-align/1auz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1auz/nostruct-align/1auz.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20458/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.741394 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1av1A id: 1av1A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1av1A/nostruct-align/1av1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1av1A/nostruct-align/1av1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1av1A/nostruct-align/1av1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28599/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.457397 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1avaC id: 1avaC alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avaC/nostruct-align/1avaC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avaC/nostruct-align/1avaC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1avaC/nostruct-align/1avaC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7953/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.957397 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1avc id: 1avc alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avc/nostruct-align/1avc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avc/nostruct-align/1avc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1avc/nostruct-align/1avc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18259/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.202393 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1avgI id: 1avgI alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avgI/nostruct-align/1avgI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avgI/nostruct-align/1avgI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1avgI/nostruct-align/1avgI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21883/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.963379 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1avmA id: 1avmA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avmA/nostruct-align/1avmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avmA/nostruct-align/1avmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1avmA/nostruct-align/1avmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25598/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.141357 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1avoA id: 1avoA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avoA/nostruct-align/1avoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avoA/nostruct-align/1avoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1avoA/nostruct-align/1avoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-772/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.436401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1avoB id: 1avoB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avoB/nostruct-align/1avoB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avoB/nostruct-align/1avoB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1avoB/nostruct-align/1avoB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12142/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.144409 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1avpA id: 1avpA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avpA/nostruct-align/1avpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avpA/nostruct-align/1avpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1avpA/nostruct-align/1avpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10151/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.161438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1avqA id: 1avqA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avqA/nostruct-align/1avqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avqA/nostruct-align/1avqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1avqA/nostruct-align/1avqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10185/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.310364 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1avwB id: 1avwB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avwB/nostruct-align/1avwB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avwB/nostruct-align/1avwB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1avwB/nostruct-align/1avwB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21339/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.451416 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1avyB id: 1avyB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avyB/nostruct-align/1avyB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avyB/nostruct-align/1avyB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1avyB/nostruct-align/1avyB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16529/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.458313 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1avyC id: 1avyC alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avyC/nostruct-align/1avyC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avyC/nostruct-align/1avyC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1avyC/nostruct-align/1avyC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17579/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.123413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aw0 id: 1aw0 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aw0/nostruct-align/1aw0.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aw0/nostruct-align/1aw0.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aw0/nostruct-align/1aw0.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25711/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.993408 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aw5 id: 1aw5 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aw5/nostruct-align/1aw5.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aw5/nostruct-align/1aw5.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aw5/nostruct-align/1aw5.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22607/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.286438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aw7A id: 1aw7A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aw7A/nostruct-align/1aw7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aw7A/nostruct-align/1aw7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aw7A/nostruct-align/1aw7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14902/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.790405 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aw8B id: 1aw8B alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aw8B/nostruct-align/1aw8B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aw8B/nostruct-align/1aw8B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aw8B/nostruct-align/1aw8B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32148/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.073425 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aw8E id: 1aw8E alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aw8E/nostruct-align/1aw8E.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aw8E/nostruct-align/1aw8E.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aw8E/nostruct-align/1aw8E.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26120/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.054443 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1awcA id: 1awcA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1awcA/nostruct-align/1awcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1awcA/nostruct-align/1awcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1awcA/nostruct-align/1awcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-130/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.182373 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1awd id: 1awd alignment found: /projects/compbio/experiments/models.97/pdb/1a/1awd/nostruct-align/1awd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1awd/nostruct-align/1awd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1awd/nostruct-align/1awd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17074/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.788391 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1awe id: 1awe alignment found: /projects/compbio/experiments/models.97/pdb/1a/1awe/nostruct-align/1awe.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1awe/nostruct-align/1awe.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1awe/nostruct-align/1awe.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16131/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.997314 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1awj id: 1awj alignment found: /projects/compbio/experiments/models.97/pdb/1a/1awj/nostruct-align/1awj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1awj/nostruct-align/1awj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1awj/nostruct-align/1awj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31603/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.626465 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1awo id: 1awo alignment found: /projects/compbio/experiments/models.97/pdb/1a/1awo/nostruct-align/1awo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1awo/nostruct-align/1awo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1awo/nostruct-align/1awo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25943/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.154419 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1awsA id: 1awsA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1awsA/nostruct-align/1awsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1awsA/nostruct-align/1awsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1awsA/nostruct-align/1awsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5925/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.079468 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ax0 id: 1ax0 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ax0/nostruct-align/1ax0.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ax0/nostruct-align/1ax0.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ax0/nostruct-align/1ax0.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19165/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.913330 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ax4A id: 1ax4A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ax4A/nostruct-align/1ax4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ax4A/nostruct-align/1ax4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ax4A/nostruct-align/1ax4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6710/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.772339 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ax8 id: 1ax8 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ax8/nostruct-align/1ax8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ax8/nostruct-align/1ax8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ax8/nostruct-align/1ax8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26276/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.133362 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1axh id: 1axh alignment found: /projects/compbio/experiments/models.97/pdb/1a/1axh/nostruct-align/1axh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1axh/nostruct-align/1axh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1axh/nostruct-align/1axh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7926/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.727417 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1axiB id: 1axiB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1axiB/nostruct-align/1axiB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1axiB/nostruct-align/1axiB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1axiB/nostruct-align/1axiB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22432/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.775391 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1axj id: 1axj alignment found: /projects/compbio/experiments/models.97/pdb/1a/1axj/nostruct-align/1axj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1axj/nostruct-align/1axj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1axj/nostruct-align/1axj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27950/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.834412 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1axkA id: 1axkA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1axkA/nostruct-align/1axkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1axkA/nostruct-align/1axkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1axkA/nostruct-align/1axkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26573/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.999390 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1axn id: 1axn alignment found: /projects/compbio/experiments/models.97/pdb/1a/1axn/nostruct-align/1axn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1axn/nostruct-align/1axn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1axn/nostruct-align/1axn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19708/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.766418 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ay7B id: 1ay7B alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ay7B/nostruct-align/1ay7B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ay7B/nostruct-align/1ay7B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ay7B/nostruct-align/1ay7B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5895/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.132385 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aye id: 1aye alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aye/nostruct-align/1aye.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aye/nostruct-align/1aye.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aye/nostruct-align/1aye.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12101/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.826416 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ayfA id: 1ayfA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ayfA/nostruct-align/1ayfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ayfA/nostruct-align/1ayfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ayfA/nostruct-align/1ayfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3184/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.808411 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ayfB id: 1ayfB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ayfB/nostruct-align/1ayfB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ayfB/nostruct-align/1ayfB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ayfB/nostruct-align/1ayfB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23654/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.227417 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ayj id: 1ayj alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ayj/nostruct-align/1ayj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ayj/nostruct-align/1ayj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ayj/nostruct-align/1ayj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5261/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.632446 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ayl id: 1ayl alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ayl/nostruct-align/1ayl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ayl/nostruct-align/1ayl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ayl/nostruct-align/1ayl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22350/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.640381 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aym1 id: 1aym1 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aym1/nostruct-align/1aym1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aym1/nostruct-align/1aym1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aym1/nostruct-align/1aym1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1179/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.779419 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aym2 id: 1aym2 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aym2/nostruct-align/1aym2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aym2/nostruct-align/1aym2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aym2/nostruct-align/1aym2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27801/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.352417 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1aym3 id: 1aym3 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aym3/nostruct-align/1aym3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aym3/nostruct-align/1aym3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aym3/nostruct-align/1aym3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4505/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.824463 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ayoA id: 1ayoA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ayoA/nostruct-align/1ayoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ayoA/nostruct-align/1ayoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ayoA/nostruct-align/1ayoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25640/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.171387 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ayx id: 1ayx alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ayx/nostruct-align/1ayx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ayx/nostruct-align/1ayx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ayx/nostruct-align/1ayx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15425/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.674438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ayyA id: 1ayyA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ayyA/nostruct-align/1ayyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ayyA/nostruct-align/1ayyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ayyA/nostruct-align/1ayyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14898/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.450439 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1az9 id: 1az9 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1az9/nostruct-align/1az9.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1az9/nostruct-align/1az9.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1az9/nostruct-align/1az9.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24022/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.498352 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1azh id: 1azh alignment found: /projects/compbio/experiments/models.97/pdb/1a/1azh/nostruct-align/1azh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1azh/nostruct-align/1azh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1azh/nostruct-align/1azh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4203/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.793335 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1azo id: 1azo alignment found: /projects/compbio/experiments/models.97/pdb/1a/1azo/nostruct-align/1azo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1azo/nostruct-align/1azo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1azo/nostruct-align/1azo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19677/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.988464 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1azpA id: 1azpA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1azpA/nostruct-align/1azpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1azpA/nostruct-align/1azpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1azpA/nostruct-align/1azpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25322/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.948364 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1azqA id: 1azqA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1azqA/nostruct-align/1azqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1azqA/nostruct-align/1azqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1azqA/nostruct-align/1azqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31611/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.948364 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1azsA id: 1azsA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1azsA/nostruct-align/1azsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1azsA/nostruct-align/1azsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1azsA/nostruct-align/1azsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20533/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.034424 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b04A id: 1b04A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b04A/nostruct-align/1b04A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b04A/nostruct-align/1b04A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b04A/nostruct-align/1b04A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2880/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.928467 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b0b id: 1b0b alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b0b/nostruct-align/1b0b.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b0b/nostruct-align/1b0b.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b0b/nostruct-align/1b0b.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29512/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.817383 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b0nA id: 1b0nA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b0nA/nostruct-align/1b0nA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b0nA/nostruct-align/1b0nA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b0nA/nostruct-align/1b0nA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29938/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.472290 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b0nB id: 1b0nB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b0nB/nostruct-align/1b0nB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b0nB/nostruct-align/1b0nB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b0nB/nostruct-align/1b0nB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1865/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.252441 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b0uA id: 1b0uA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b0uA/nostruct-align/1b0uA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b0uA/nostruct-align/1b0uA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b0uA/nostruct-align/1b0uA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17844/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.415405 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b0y id: 1b0y alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b0y/nostruct-align/1b0y.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b0y/nostruct-align/1b0y.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b0y/nostruct-align/1b0y.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10809/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.622437 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b0yA id: 1b0yA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b0yA/nostruct-align/1b0yA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b0yA/nostruct-align/1b0yA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b0yA/nostruct-align/1b0yA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6264/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.713379 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b10A id: 1b10A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b10A/nostruct-align/1b10A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b10A/nostruct-align/1b10A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b10A/nostruct-align/1b10A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8132/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.454468 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b12A id: 1b12A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b12A/nostruct-align/1b12A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b12A/nostruct-align/1b12A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b12A/nostruct-align/1b12A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28642/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.368408 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b16A id: 1b16A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b16A/nostruct-align/1b16A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b16A/nostruct-align/1b16A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b16A/nostruct-align/1b16A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11649/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -21.591370 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b1cA id: 1b1cA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b1cA/nostruct-align/1b1cA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b1cA/nostruct-align/1b1cA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b1cA/nostruct-align/1b1cA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7334/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.391357 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b20A id: 1b20A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b20A/nostruct-align/1b20A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b20A/nostruct-align/1b20A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b20A/nostruct-align/1b20A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21837/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.873413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b22A id: 1b22A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b22A/nostruct-align/1b22A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b22A/nostruct-align/1b22A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b22A/nostruct-align/1b22A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10572/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.047424 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b24A id: 1b24A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b24A/nostruct-align/1b24A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b24A/nostruct-align/1b24A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b24A/nostruct-align/1b24A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17882/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.865479 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b25A id: 1b25A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b25A/nostruct-align/1b25A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b25A/nostruct-align/1b25A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b25A/nostruct-align/1b25A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29362/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.490417 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b2iA id: 1b2iA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b2iA/nostruct-align/1b2iA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b2iA/nostruct-align/1b2iA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b2iA/nostruct-align/1b2iA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23654/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.371338 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b2nA id: 1b2nA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b2nA/nostruct-align/1b2nA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b2nA/nostruct-align/1b2nA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b2nA/nostruct-align/1b2nA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4609/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.672363 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b2nB id: 1b2nB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b2nB/nostruct-align/1b2nB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b2nB/nostruct-align/1b2nB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b2nB/nostruct-align/1b2nB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19046/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.769409 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b2pA id: 1b2pA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b2pA/nostruct-align/1b2pA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b2pA/nostruct-align/1b2pA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b2pA/nostruct-align/1b2pA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7105/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.755371 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b2sD id: 1b2sD alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b2sD/nostruct-align/1b2sD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b2sD/nostruct-align/1b2sD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b2sD/nostruct-align/1b2sD.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-15426/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.187378 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b2vA id: 1b2vA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b2vA/nostruct-align/1b2vA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b2vA/nostruct-align/1b2vA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b2vA/nostruct-align/1b2vA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-389/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.853394 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b33N id: 1b33N alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b33N/nostruct-align/1b33N.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b33N/nostruct-align/1b33N.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b33N/nostruct-align/1b33N.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17977/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.752380 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b34B id: 1b34B alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b34B/nostruct-align/1b34B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b34B/nostruct-align/1b34B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b34B/nostruct-align/1b34B.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26369/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.193359 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b35A id: 1b35A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b35A/nostruct-align/1b35A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b35A/nostruct-align/1b35A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b35A/nostruct-align/1b35A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5398/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.871338 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b35B id: 1b35B alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b35B/nostruct-align/1b35B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b35B/nostruct-align/1b35B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b35B/nostruct-align/1b35B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10531/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.392334 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b35C id: 1b35C alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b35C/nostruct-align/1b35C.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b35C/nostruct-align/1b35C.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b35C/nostruct-align/1b35C.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27549/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.600342 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b35D id: 1b35D alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b35D/nostruct-align/1b35D.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b35D/nostruct-align/1b35D.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b35D/nostruct-align/1b35D.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11760/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.242432 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b37B id: 1b37B alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b37B/nostruct-align/1b37B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b37B/nostruct-align/1b37B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b37B/nostruct-align/1b37B.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16134/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -22.550354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b3aA id: 1b3aA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3aA/nostruct-align/1b3aA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3aA/nostruct-align/1b3aA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b3aA/nostruct-align/1b3aA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27017/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.888367 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b3eA id: 1b3eA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3eA/nostruct-align/1b3eA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3eA/nostruct-align/1b3eA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b3eA/nostruct-align/1b3eA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21094/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.883423 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b3jA id: 1b3jA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3jA/nostruct-align/1b3jA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3jA/nostruct-align/1b3jA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b3jA/nostruct-align/1b3jA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10841/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.104370 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b3mA id: 1b3mA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3mA/nostruct-align/1b3mA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3mA/nostruct-align/1b3mA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b3mA/nostruct-align/1b3mA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30858/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -27.365479 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b3nA id: 1b3nA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3nA/nostruct-align/1b3nA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3nA/nostruct-align/1b3nA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b3nA/nostruct-align/1b3nA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6140/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.876404 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b3qA id: 1b3qA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3qA/nostruct-align/1b3qA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3qA/nostruct-align/1b3qA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b3qA/nostruct-align/1b3qA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25403/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.520386 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b3rA id: 1b3rA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3rA/nostruct-align/1b3rA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3rA/nostruct-align/1b3rA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b3rA/nostruct-align/1b3rA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1244/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -34.240356 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b3tA id: 1b3tA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3tA/nostruct-align/1b3tA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3tA/nostruct-align/1b3tA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b3tA/nostruct-align/1b3tA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11856/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.072449 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b3uA id: 1b3uA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3uA/nostruct-align/1b3uA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3uA/nostruct-align/1b3uA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b3uA/nostruct-align/1b3uA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10344/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.729492 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b47A id: 1b47A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b47A/nostruct-align/1b47A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b47A/nostruct-align/1b47A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b47A/nostruct-align/1b47A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1242/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.832336 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b4aA id: 1b4aA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4aA/nostruct-align/1b4aA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4aA/nostruct-align/1b4aA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b4aA/nostruct-align/1b4aA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20818/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.478394 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b4cA id: 1b4cA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4cA/nostruct-align/1b4cA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4cA/nostruct-align/1b4cA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b4cA/nostruct-align/1b4cA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7750/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.489380 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b4eA id: 1b4eA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4eA/nostruct-align/1b4eA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4eA/nostruct-align/1b4eA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b4eA/nostruct-align/1b4eA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5909/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.988342 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b4fA id: 1b4fA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4fA/nostruct-align/1b4fA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4fA/nostruct-align/1b4fA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b4fA/nostruct-align/1b4fA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30767/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.615356 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b4fG id: 1b4fG alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4fG/nostruct-align/1b4fG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4fG/nostruct-align/1b4fG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b4fG/nostruct-align/1b4fG.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28113/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.961426 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b4kA id: 1b4kA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4kA/nostruct-align/1b4kA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4kA/nostruct-align/1b4kA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b4kA/nostruct-align/1b4kA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5257/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.450378 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b4r id: 1b4r alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4r/nostruct-align/1b4r.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4r/nostruct-align/1b4r.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b4r/nostruct-align/1b4r.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5455/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.161438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b4rA id: 1b4rA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4rA/nostruct-align/1b4rA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4rA/nostruct-align/1b4rA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b4rA/nostruct-align/1b4rA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1280/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.227417 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b4vA id: 1b4vA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4vA/nostruct-align/1b4vA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4vA/nostruct-align/1b4vA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b4vA/nostruct-align/1b4vA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15770/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.747437 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b54 id: 1b54 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b54/nostruct-align/1b54.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b54/nostruct-align/1b54.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b54/nostruct-align/1b54.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27248/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.065430 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b5eA id: 1b5eA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b5eA/nostruct-align/1b5eA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b5eA/nostruct-align/1b5eA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b5eA/nostruct-align/1b5eA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4160/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.424438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b5fA id: 1b5fA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b5fA/nostruct-align/1b5fA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b5fA/nostruct-align/1b5fA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b5fA/nostruct-align/1b5fA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4322/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.340454 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b5fB id: 1b5fB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b5fB/nostruct-align/1b5fB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b5fB/nostruct-align/1b5fB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b5fB/nostruct-align/1b5fB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4179/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.487427 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b5l id: 1b5l alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b5l/nostruct-align/1b5l.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b5l/nostruct-align/1b5l.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b5l/nostruct-align/1b5l.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31931/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.016357 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b5qA id: 1b5qA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b5qA/nostruct-align/1b5qA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b5qA/nostruct-align/1b5qA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b5qA/nostruct-align/1b5qA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5425/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -19.024353 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b5tA id: 1b5tA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b5tA/nostruct-align/1b5tA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b5tA/nostruct-align/1b5tA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b5tA/nostruct-align/1b5tA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31638/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.370422 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b63A id: 1b63A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b63A/nostruct-align/1b63A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b63A/nostruct-align/1b63A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b63A/nostruct-align/1b63A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3468/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.938416 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b64 id: 1b64 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b64/nostruct-align/1b64.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b64/nostruct-align/1b64.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b64/nostruct-align/1b64.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19452/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.166443 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b65A id: 1b65A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b65A/nostruct-align/1b65A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b65A/nostruct-align/1b65A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b65A/nostruct-align/1b65A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8527/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.850403 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b66A id: 1b66A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b66A/nostruct-align/1b66A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b66A/nostruct-align/1b66A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b66A/nostruct-align/1b66A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22944/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.142456 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b67A id: 1b67A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b67A/nostruct-align/1b67A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b67A/nostruct-align/1b67A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b67A/nostruct-align/1b67A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12492/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.945312 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b6a id: 1b6a alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b6a/nostruct-align/1b6a.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b6a/nostruct-align/1b6a.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b6a/nostruct-align/1b6a.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13494/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.826355 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b6cB id: 1b6cB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b6cB/nostruct-align/1b6cB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b6cB/nostruct-align/1b6cB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b6cB/nostruct-align/1b6cB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12662/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.924438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b6e id: 1b6e alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b6e/nostruct-align/1b6e.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b6e/nostruct-align/1b6e.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b6e/nostruct-align/1b6e.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26499/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.581421 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b6g id: 1b6g alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b6g/nostruct-align/1b6g.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b6g/nostruct-align/1b6g.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b6g/nostruct-align/1b6g.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27046/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.493408 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b6rA id: 1b6rA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b6rA/nostruct-align/1b6rA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b6rA/nostruct-align/1b6rA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b6rA/nostruct-align/1b6rA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11498/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.828430 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b6tA id: 1b6tA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b6tA/nostruct-align/1b6tA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b6tA/nostruct-align/1b6tA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b6tA/nostruct-align/1b6tA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14938/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.227295 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b6u id: 1b6u alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b6u/nostruct-align/1b6u.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b6u/nostruct-align/1b6u.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b6u/nostruct-align/1b6u.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23536/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.602417 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b71A id: 1b71A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b71A/nostruct-align/1b71A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b71A/nostruct-align/1b71A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b71A/nostruct-align/1b71A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18901/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.938477 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b72A id: 1b72A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b72A/nostruct-align/1b72A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b72A/nostruct-align/1b72A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b72A/nostruct-align/1b72A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15458/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.754395 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b73A id: 1b73A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b73A/nostruct-align/1b73A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b73A/nostruct-align/1b73A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b73A/nostruct-align/1b73A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10498/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.457458 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b74A id: 1b74A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b74A/nostruct-align/1b74A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b74A/nostruct-align/1b74A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b74A/nostruct-align/1b74A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16870/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.457458 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b77A id: 1b77A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b77A/nostruct-align/1b77A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b77A/nostruct-align/1b77A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b77A/nostruct-align/1b77A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21187/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.435364 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b78A id: 1b78A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b78A/nostruct-align/1b78A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b78A/nostruct-align/1b78A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b78A/nostruct-align/1b78A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13766/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.367432 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b79A id: 1b79A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b79A/nostruct-align/1b79A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b79A/nostruct-align/1b79A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b79A/nostruct-align/1b79A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5642/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.484436 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b7bA id: 1b7bA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b7bA/nostruct-align/1b7bA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b7bA/nostruct-align/1b7bA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b7bA/nostruct-align/1b7bA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22764/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.116394 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b7dA id: 1b7dA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b7dA/nostruct-align/1b7dA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b7dA/nostruct-align/1b7dA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b7dA/nostruct-align/1b7dA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30315/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.092407 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b7eA id: 1b7eA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b7eA/nostruct-align/1b7eA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b7eA/nostruct-align/1b7eA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b7eA/nostruct-align/1b7eA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6933/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.551453 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b7fA id: 1b7fA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b7fA/nostruct-align/1b7fA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b7fA/nostruct-align/1b7fA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b7fA/nostruct-align/1b7fA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18966/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.874390 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b7gO id: 1b7gO alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b7gO/nostruct-align/1b7gO.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b7gO/nostruct-align/1b7gO.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b7gO/nostruct-align/1b7gO.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12118/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.303467 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b87A id: 1b87A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b87A/nostruct-align/1b87A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b87A/nostruct-align/1b87A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b87A/nostruct-align/1b87A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21548/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.529419 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b89A id: 1b89A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b89A/nostruct-align/1b89A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b89A/nostruct-align/1b89A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b89A/nostruct-align/1b89A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26341/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.642395 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b8aA id: 1b8aA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8aA/nostruct-align/1b8aA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8aA/nostruct-align/1b8aA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8aA/nostruct-align/1b8aA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18890/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.847290 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b8bA id: 1b8bA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8bA/nostruct-align/1b8bA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8bA/nostruct-align/1b8bA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8bA/nostruct-align/1b8bA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10060/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.108398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b8dA id: 1b8dA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8dA/nostruct-align/1b8dA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8dA/nostruct-align/1b8dA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8dA/nostruct-align/1b8dA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15098/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.075378 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b8fA id: 1b8fA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8fA/nostruct-align/1b8fA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8fA/nostruct-align/1b8fA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8fA/nostruct-align/1b8fA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5069/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.898438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b8gA id: 1b8gA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8gA/nostruct-align/1b8gA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8gA/nostruct-align/1b8gA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8gA/nostruct-align/1b8gA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15866/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.501465 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b8jA id: 1b8jA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8jA/nostruct-align/1b8jA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8jA/nostruct-align/1b8jA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8jA/nostruct-align/1b8jA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2209/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.199463 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b8kA id: 1b8kA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8kA/nostruct-align/1b8kA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8kA/nostruct-align/1b8kA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8kA/nostruct-align/1b8kA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5764/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.295410 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b8oA id: 1b8oA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8oA/nostruct-align/1b8oA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8oA/nostruct-align/1b8oA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8oA/nostruct-align/1b8oA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22792/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.994324 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b8qA id: 1b8qA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8qA/nostruct-align/1b8qA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8qA/nostruct-align/1b8qA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8qA/nostruct-align/1b8qA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5662/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.776489 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b8sA id: 1b8sA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8sA/nostruct-align/1b8sA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8sA/nostruct-align/1b8sA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8sA/nostruct-align/1b8sA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12511/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.012329 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b8tA id: 1b8tA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8tA/nostruct-align/1b8tA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8tA/nostruct-align/1b8tA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8tA/nostruct-align/1b8tA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22085/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.784424 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b8wA id: 1b8wA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8wA/nostruct-align/1b8wA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8wA/nostruct-align/1b8wA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8wA/nostruct-align/1b8wA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25272/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.074402 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b8xA id: 1b8xA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8xA/nostruct-align/1b8xA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8xA/nostruct-align/1b8xA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8xA/nostruct-align/1b8xA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21340/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.553345 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b91A id: 1b91A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b91A/nostruct-align/1b91A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b91A/nostruct-align/1b91A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b91A/nostruct-align/1b91A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1103/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.844360 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b93A id: 1b93A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b93A/nostruct-align/1b93A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b93A/nostruct-align/1b93A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b93A/nostruct-align/1b93A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10348/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.562378 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b93B id: 1b93B alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b93B/nostruct-align/1b93B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b93B/nostruct-align/1b93B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b93B/nostruct-align/1b93B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23627/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.612427 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b9dA id: 1b9dA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9dA/nostruct-align/1b9dA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9dA/nostruct-align/1b9dA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b9dA/nostruct-align/1b9dA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-299/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.182495 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b9hA id: 1b9hA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9hA/nostruct-align/1b9hA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9hA/nostruct-align/1b9hA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b9hA/nostruct-align/1b9hA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9126/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.357422 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b9lA id: 1b9lA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9lA/nostruct-align/1b9lA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9lA/nostruct-align/1b9lA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b9lA/nostruct-align/1b9lA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31815/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.323364 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b9mA id: 1b9mA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9mA/nostruct-align/1b9mA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9mA/nostruct-align/1b9mA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b9mA/nostruct-align/1b9mA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11162/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.300415 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b9oA id: 1b9oA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9oA/nostruct-align/1b9oA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9oA/nostruct-align/1b9oA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b9oA/nostruct-align/1b9oA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27252/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.174316 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b9pA id: 1b9pA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9pA/nostruct-align/1b9pA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9pA/nostruct-align/1b9pA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b9pA/nostruct-align/1b9pA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10106/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.717407 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b9uA id: 1b9uA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9uA/nostruct-align/1b9uA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9uA/nostruct-align/1b9uA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b9uA/nostruct-align/1b9uA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27775/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.553345 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b9wA id: 1b9wA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9wA/nostruct-align/1b9wA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9wA/nostruct-align/1b9wA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b9wA/nostruct-align/1b9wA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31444/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.419434 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b9xB id: 1b9xB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9xB/nostruct-align/1b9xB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9xB/nostruct-align/1b9xB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b9xB/nostruct-align/1b9xB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16797/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.308472 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b9yC id: 1b9yC alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9yC/nostruct-align/1b9yC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9yC/nostruct-align/1b9yC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b9yC/nostruct-align/1b9yC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2062/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.171387 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1b9zA id: 1b9zA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9zA/nostruct-align/1b9zA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9zA/nostruct-align/1b9zA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b9zA/nostruct-align/1b9zA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31182/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.215454 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ba1 id: 1ba1 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1ba1/nostruct-align/1ba1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1ba1/nostruct-align/1ba1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1ba1/nostruct-align/1ba1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18315/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.683411 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ba4 id: 1ba4 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1ba4/nostruct-align/1ba4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1ba4/nostruct-align/1ba4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1ba4/nostruct-align/1ba4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27578/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.057373 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ba5 id: 1ba5 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1ba5/nostruct-align/1ba5.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1ba5/nostruct-align/1ba5.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1ba5/nostruct-align/1ba5.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7894/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.975342 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ba6 id: 1ba6 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1ba6/nostruct-align/1ba6.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1ba6/nostruct-align/1ba6.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1ba6/nostruct-align/1ba6.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1589/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.071350 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1babA id: 1babA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1babA/nostruct-align/1babA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1babA/nostruct-align/1babA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1babA/nostruct-align/1babA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15943/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.623413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1babB id: 1babB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1babB/nostruct-align/1babB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1babB/nostruct-align/1babB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1babB/nostruct-align/1babB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22166/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.555420 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bag id: 1bag alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bag/nostruct-align/1bag.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bag/nostruct-align/1bag.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bag/nostruct-align/1bag.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12436/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.628418 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bak id: 1bak alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bak/nostruct-align/1bak.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bak/nostruct-align/1bak.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bak/nostruct-align/1bak.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28179/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.076416 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bal id: 1bal alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bal/nostruct-align/1bal.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bal/nostruct-align/1bal.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bal/nostruct-align/1bal.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21134/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.903320 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bam id: 1bam alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bam/nostruct-align/1bam.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bam/nostruct-align/1bam.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bam/nostruct-align/1bam.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10736/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.397400 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1baq id: 1baq alignment found: /projects/compbio/experiments/models.97/pdb/1b/1baq/nostruct-align/1baq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1baq/nostruct-align/1baq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1baq/nostruct-align/1baq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19754/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.472412 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bax id: 1bax alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bax/nostruct-align/1bax.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bax/nostruct-align/1bax.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bax/nostruct-align/1bax.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15887/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.864380 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bazA id: 1bazA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bazA/nostruct-align/1bazA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bazA/nostruct-align/1bazA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bazA/nostruct-align/1bazA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32285/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.221436 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bb1A id: 1bb1A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bb1A/nostruct-align/1bb1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bb1A/nostruct-align/1bb1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bb1A/nostruct-align/1bb1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24931/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.618347 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bb9 id: 1bb9 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bb9/nostruct-align/1bb9.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bb9/nostruct-align/1bb9.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bb9/nostruct-align/1bb9.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30369/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.099365 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bba id: 1bba alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bba/nostruct-align/1bba.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bba/nostruct-align/1bba.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bba/nostruct-align/1bba.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31342/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.686401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bbg id: 1bbg alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bbg/nostruct-align/1bbg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bbg/nostruct-align/1bbg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bbg/nostruct-align/1bbg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8935/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.318359 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bbhA id: 1bbhA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bbhA/nostruct-align/1bbhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bbhA/nostruct-align/1bbhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bbhA/nostruct-align/1bbhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8051/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.317383 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bbl id: 1bbl alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bbl/nostruct-align/1bbl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bbl/nostruct-align/1bbl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bbl/nostruct-align/1bbl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10759/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.378418 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bbo id: 1bbo alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bbo/nostruct-align/1bbo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bbo/nostruct-align/1bbo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bbo/nostruct-align/1bbo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20885/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.438354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bbo_1 id: 1bbo_1 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bbo_1/nostruct-align/1bbo_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bbo_1/nostruct-align/1bbo_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bbo_1/nostruct-align/1bbo_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15944/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.205444 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bbo_2 id: 1bbo_2 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bbo_2/nostruct-align/1bbo_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bbo_2/nostruct-align/1bbo_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bbo_2/nostruct-align/1bbo_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31489/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.594360 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bbpA id: 1bbpA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bbpA/nostruct-align/1bbpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bbpA/nostruct-align/1bbpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bbpA/nostruct-align/1bbpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14215/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.383423 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bbt1 id: 1bbt1 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bbt1/nostruct-align/1bbt1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bbt1/nostruct-align/1bbt1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bbt1/nostruct-align/1bbt1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13468/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.650391 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bbt3 id: 1bbt3 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bbt3/nostruct-align/1bbt3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bbt3/nostruct-align/1bbt3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bbt3/nostruct-align/1bbt3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1523/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.733398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bbzA id: 1bbzA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bbzA/nostruct-align/1bbzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bbzA/nostruct-align/1bbzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bbzA/nostruct-align/1bbzA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24277/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.246460 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bc4 id: 1bc4 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bc4/nostruct-align/1bc4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bc4/nostruct-align/1bc4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bc4/nostruct-align/1bc4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28942/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.197388 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bc5A id: 1bc5A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bc5A/nostruct-align/1bc5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bc5A/nostruct-align/1bc5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bc5A/nostruct-align/1bc5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17191/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.805420 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bc8C id: 1bc8C alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bc8C/nostruct-align/1bc8C.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bc8C/nostruct-align/1bc8C.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bc8C/nostruct-align/1bc8C.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14569/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.932373 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bcfA id: 1bcfA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bcfA/nostruct-align/1bcfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bcfA/nostruct-align/1bcfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bcfA/nostruct-align/1bcfA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4825/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.876343 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bco id: 1bco alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bco/nostruct-align/1bco.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bco/nostruct-align/1bco.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bco/nostruct-align/1bco.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3181/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.570374 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bco_1 id: 1bco_1 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bco_1/nostruct-align/1bco_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bco_1/nostruct-align/1bco_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bco_1/nostruct-align/1bco_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16972/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.375366 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bco_2 id: 1bco_2 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bco_2/nostruct-align/1bco_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bco_2/nostruct-align/1bco_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bco_2/nostruct-align/1bco_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23235/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.177368 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bcpA id: 1bcpA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bcpA/nostruct-align/1bcpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bcpA/nostruct-align/1bcpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bcpA/nostruct-align/1bcpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16357/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.973328 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bcpB id: 1bcpB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bcpB/nostruct-align/1bcpB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bcpB/nostruct-align/1bcpB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bcpB/nostruct-align/1bcpB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19663/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.969421 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bcpD id: 1bcpD alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bcpD/nostruct-align/1bcpD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bcpD/nostruct-align/1bcpD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bcpD/nostruct-align/1bcpD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6502/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.020447 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bct id: 1bct alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bct/nostruct-align/1bct.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bct/nostruct-align/1bct.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bct/nostruct-align/1bct.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28965/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.498413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bd0A id: 1bd0A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bd0A/nostruct-align/1bd0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bd0A/nostruct-align/1bd0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bd0A/nostruct-align/1bd0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7011/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.719360 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bd3A id: 1bd3A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bd3A/nostruct-align/1bd3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bd3A/nostruct-align/1bd3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bd3A/nostruct-align/1bd3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4202/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.506409 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bd8 id: 1bd8 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bd8/nostruct-align/1bd8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bd8/nostruct-align/1bd8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bd8/nostruct-align/1bd8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15482/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.848389 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bdb id: 1bdb alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bdb/nostruct-align/1bdb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bdb/nostruct-align/1bdb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bdb/nostruct-align/1bdb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24884/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -23.472351 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bde id: 1bde alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bde/nostruct-align/1bde.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bde/nostruct-align/1bde.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bde/nostruct-align/1bde.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11915/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.382385 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bdfA id: 1bdfA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bdfA/nostruct-align/1bdfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bdfA/nostruct-align/1bdfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bdfA/nostruct-align/1bdfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19824/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.223328 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bdmA id: 1bdmA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bdmA/nostruct-align/1bdmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bdmA/nostruct-align/1bdmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bdmA/nostruct-align/1bdmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19040/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.211426 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bdmA_1 id: 1bdmA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bdmA_1/nostruct-align/1bdmA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bdmA_1/nostruct-align/1bdmA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bdmA_1/nostruct-align/1bdmA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23881/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.731323 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bdmA_2 id: 1bdmA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bdmA_2/nostruct-align/1bdmA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bdmA_2/nostruct-align/1bdmA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bdmA_2/nostruct-align/1bdmA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3581/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.615417 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bdmB id: 1bdmB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bdmB/nostruct-align/1bdmB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bdmB/nostruct-align/1bdmB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bdmB/nostruct-align/1bdmB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4950/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.310486 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bdo id: 1bdo alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bdo/nostruct-align/1bdo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bdo/nostruct-align/1bdo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bdo/nostruct-align/1bdo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-594/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.659424 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bds id: 1bds alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bds/nostruct-align/1bds.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bds/nostruct-align/1bds.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bds/nostruct-align/1bds.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16370/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.122437 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bdyA id: 1bdyA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bdyA/nostruct-align/1bdyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bdyA/nostruct-align/1bdyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bdyA/nostruct-align/1bdyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10293/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.684448 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1be1 id: 1be1 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be1/nostruct-align/1be1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be1/nostruct-align/1be1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1be1/nostruct-align/1be1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13828/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.701416 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1be3A id: 1be3A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3A/nostruct-align/1be3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3A/nostruct-align/1be3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1be3A/nostruct-align/1be3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28692/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.911438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1be3B id: 1be3B alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3B/nostruct-align/1be3B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3B/nostruct-align/1be3B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1be3B/nostruct-align/1be3B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15216/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.604492 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1be3C id: 1be3C alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3C/nostruct-align/1be3C.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3C/nostruct-align/1be3C.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1be3C/nostruct-align/1be3C.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10517/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.907471 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1be3D id: 1be3D alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3D/nostruct-align/1be3D.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3D/nostruct-align/1be3D.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1be3D/nostruct-align/1be3D.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32275/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.931335 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1be3F id: 1be3F alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3F/nostruct-align/1be3F.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3F/nostruct-align/1be3F.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1be3F/nostruct-align/1be3F.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27541/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.149414 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1be3G id: 1be3G alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3G/nostruct-align/1be3G.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3G/nostruct-align/1be3G.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1be3G/nostruct-align/1be3G.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7579/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.706299 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1be3H id: 1be3H alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3H/nostruct-align/1be3H.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3H/nostruct-align/1be3H.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1be3H/nostruct-align/1be3H.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26313/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.094360 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1be3I id: 1be3I alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3I/nostruct-align/1be3I.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3I/nostruct-align/1be3I.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1be3I/nostruct-align/1be3I.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7775/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.794373 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1be3J id: 1be3J alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3J/nostruct-align/1be3J.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3J/nostruct-align/1be3J.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1be3J/nostruct-align/1be3J.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22852/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.100464 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1be9A id: 1be9A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be9A/nostruct-align/1be9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be9A/nostruct-align/1be9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1be9A/nostruct-align/1be9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19373/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.996338 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bea id: 1bea alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bea/nostruct-align/1bea.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bea/nostruct-align/1bea.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bea/nostruct-align/1bea.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2206/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.449341 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bebA id: 1bebA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bebA/nostruct-align/1bebA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bebA/nostruct-align/1bebA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bebA/nostruct-align/1bebA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10528/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.169312 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bec id: 1bec alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bec/nostruct-align/1bec.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bec/nostruct-align/1bec.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bec/nostruct-align/1bec.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6168/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.842407 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1befA id: 1befA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1befA/nostruct-align/1befA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1befA/nostruct-align/1befA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1befA/nostruct-align/1befA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7086/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.177368 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1behA id: 1behA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1behA/nostruct-align/1behA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1behA/nostruct-align/1behA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1behA/nostruct-align/1behA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31126/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.521484 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1benA id: 1benA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1benA/nostruct-align/1benA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1benA/nostruct-align/1benA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1benA/nostruct-align/1benA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30558/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.117371 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1benB id: 1benB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1benB/nostruct-align/1benB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1benB/nostruct-align/1benB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1benB/nostruct-align/1benB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20303/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.944336 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1beo id: 1beo alignment found: /projects/compbio/experiments/models.97/pdb/1b/1beo/nostruct-align/1beo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1beo/nostruct-align/1beo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1beo/nostruct-align/1beo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17564/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.754456 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bet id: 1bet alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bet/nostruct-align/1bet.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bet/nostruct-align/1bet.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bet/nostruct-align/1bet.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1568/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.462402 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bev1 id: 1bev1 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bev1/nostruct-align/1bev1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bev1/nostruct-align/1bev1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bev1/nostruct-align/1bev1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26846/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.355347 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bev4 id: 1bev4 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bev4/nostruct-align/1bev4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bev4/nostruct-align/1bev4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bev4/nostruct-align/1bev4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13775/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.352417 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bf2 id: 1bf2 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bf2/nostruct-align/1bf2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bf2/nostruct-align/1bf2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bf2/nostruct-align/1bf2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12662/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.650391 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bf8 id: 1bf8 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bf8/nostruct-align/1bf8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bf8/nostruct-align/1bf8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bf8/nostruct-align/1bf8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16226/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.104370 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bfd id: 1bfd alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bfd/nostruct-align/1bfd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bfd/nostruct-align/1bfd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bfd/nostruct-align/1bfd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5643/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.614380 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bfeA id: 1bfeA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bfeA/nostruct-align/1bfeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bfeA/nostruct-align/1bfeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bfeA/nostruct-align/1bfeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27926/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.302490 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bfg id: 1bfg alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bfg/nostruct-align/1bfg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bfg/nostruct-align/1bfg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bfg/nostruct-align/1bfg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19568/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.281372 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bfmA id: 1bfmA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bfmA/nostruct-align/1bfmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bfmA/nostruct-align/1bfmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bfmA/nostruct-align/1bfmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20922/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.872437 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bg0 id: 1bg0 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bg0/nostruct-align/1bg0.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bg0/nostruct-align/1bg0.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bg0/nostruct-align/1bg0.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28635/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.438354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bg1A id: 1bg1A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bg1A/nostruct-align/1bg1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bg1A/nostruct-align/1bg1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bg1A/nostruct-align/1bg1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23355/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.354492 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bg2 id: 1bg2 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bg2/nostruct-align/1bg2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bg2/nostruct-align/1bg2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bg2/nostruct-align/1bg2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30827/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.878418 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bg6 id: 1bg6 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bg6/nostruct-align/1bg6.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bg6/nostruct-align/1bg6.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bg6/nostruct-align/1bg6.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17607/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -22.504395 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bg7 id: 1bg7 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bg7/nostruct-align/1bg7.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bg7/nostruct-align/1bg7.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bg7/nostruct-align/1bg7.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16054/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.432495 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bg8A id: 1bg8A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bg8A/nostruct-align/1bg8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bg8A/nostruct-align/1bg8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bg8A/nostruct-align/1bg8A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11109/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.610413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bgc id: 1bgc alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bgc/nostruct-align/1bgc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bgc/nostruct-align/1bgc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bgc/nostruct-align/1bgc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26182/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.671387 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bgeB id: 1bgeB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bgeB/nostruct-align/1bgeB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bgeB/nostruct-align/1bgeB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bgeB/nostruct-align/1bgeB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-26492/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.001343 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bgf id: 1bgf alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bgf/nostruct-align/1bgf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bgf/nostruct-align/1bgf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bgf/nostruct-align/1bgf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15038/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.974487 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bgj id: 1bgj alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bgj/nostruct-align/1bgj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bgj/nostruct-align/1bgj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bgj/nostruct-align/1bgj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8630/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -23.245483 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bgk id: 1bgk alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bgk/nostruct-align/1bgk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bgk/nostruct-align/1bgk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bgk/nostruct-align/1bgk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10576/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.276428 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bglA id: 1bglA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bglA/nostruct-align/1bglA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bglA/nostruct-align/1bglA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bglA/nostruct-align/1bglA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25259/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.232422 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bglA_1 id: 1bglA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bglA_1/nostruct-align/1bglA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bglA_1/nostruct-align/1bglA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bglA_1/nostruct-align/1bglA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26958/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.647461 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bglA_2 id: 1bglA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bglA_2/nostruct-align/1bglA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bglA_2/nostruct-align/1bglA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bglA_2/nostruct-align/1bglA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15593/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.836426 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bglA_3 id: 1bglA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bglA_3/nostruct-align/1bglA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bglA_3/nostruct-align/1bglA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bglA_3/nostruct-align/1bglA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27271/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.966309 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bglA_4 id: 1bglA_4 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bglA_4/nostruct-align/1bglA_4.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bglA_4/nostruct-align/1bglA_4.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bglA_4/nostruct-align/1bglA_4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24862/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.139404 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bglA_5 id: 1bglA_5 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bglA_5/nostruct-align/1bglA_5.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bglA_5/nostruct-align/1bglA_5.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bglA_5/nostruct-align/1bglA_5.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5868/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.242432 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bgp id: 1bgp alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bgp/nostruct-align/1bgp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bgp/nostruct-align/1bgp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bgp/nostruct-align/1bgp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23142/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.229492 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bgvA id: 1bgvA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bgvA/nostruct-align/1bgvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bgvA/nostruct-align/1bgvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bgvA/nostruct-align/1bgvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10443/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -22.504333 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bgyE id: 1bgyE alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bgyE/nostruct-align/1bgyE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bgyE/nostruct-align/1bgyE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bgyE/nostruct-align/1bgyE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15673/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.622437 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bh5A id: 1bh5A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bh5A/nostruct-align/1bh5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bh5A/nostruct-align/1bh5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bh5A/nostruct-align/1bh5A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-20593/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.842407 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bh7 id: 1bh7 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bh7/nostruct-align/1bh7.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bh7/nostruct-align/1bh7.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bh7/nostruct-align/1bh7.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16932/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.421387 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bh9A id: 1bh9A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bh9A/nostruct-align/1bh9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bh9A/nostruct-align/1bh9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bh9A/nostruct-align/1bh9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13567/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.779419 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bh9B id: 1bh9B alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bh9B/nostruct-align/1bh9B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bh9B/nostruct-align/1bh9B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bh9B/nostruct-align/1bh9B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27025/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.338379 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bhb id: 1bhb alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhb/nostruct-align/1bhb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhb/nostruct-align/1bhb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bhb/nostruct-align/1bhb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9805/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.848389 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bhdA id: 1bhdA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhdA/nostruct-align/1bhdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhdA/nostruct-align/1bhdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bhdA/nostruct-align/1bhdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32527/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.599365 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bhe id: 1bhe alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhe/nostruct-align/1bhe.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhe/nostruct-align/1bhe.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bhe/nostruct-align/1bhe.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4921/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.664307 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bhgA id: 1bhgA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhgA/nostruct-align/1bhgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhgA/nostruct-align/1bhgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bhgA/nostruct-align/1bhgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12164/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.972412 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bhi id: 1bhi alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhi/nostruct-align/1bhi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhi/nostruct-align/1bhi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bhi/nostruct-align/1bhi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7793/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.238403 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bhjA id: 1bhjA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhjA/nostruct-align/1bhjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhjA/nostruct-align/1bhjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bhjA/nostruct-align/1bhjA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6314/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -26.928406 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bhp id: 1bhp alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhp/nostruct-align/1bhp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhp/nostruct-align/1bhp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bhp/nostruct-align/1bhp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4771/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.857361 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bhtA id: 1bhtA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhtA/nostruct-align/1bhtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhtA/nostruct-align/1bhtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bhtA/nostruct-align/1bhtA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13922/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.353394 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bhu id: 1bhu alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhu/nostruct-align/1bhu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhu/nostruct-align/1bhu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bhu/nostruct-align/1bhu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31976/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.186401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bi0 id: 1bi0 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bi0/nostruct-align/1bi0.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bi0/nostruct-align/1bi0.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bi0/nostruct-align/1bi0.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31958/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.731384 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bi5A id: 1bi5A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bi5A/nostruct-align/1bi5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bi5A/nostruct-align/1bi5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bi5A/nostruct-align/1bi5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27182/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.739441 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bi6H id: 1bi6H alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bi6H/nostruct-align/1bi6H.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bi6H/nostruct-align/1bi6H.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bi6H/nostruct-align/1bi6H.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20135/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.081421 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bi6H_1 id: 1bi6H_1 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bi6H_1/nostruct-align/1bi6H_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bi6H_1/nostruct-align/1bi6H_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bi6H_1/nostruct-align/1bi6H_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22039/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.262390 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bia id: 1bia alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bia/nostruct-align/1bia.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bia/nostruct-align/1bia.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bia/nostruct-align/1bia.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25873/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.066345 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bia_1 id: 1bia_1 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bia_1/nostruct-align/1bia_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bia_1/nostruct-align/1bia_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bia_1/nostruct-align/1bia_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1148/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.732422 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bia_2 id: 1bia_2 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bia_2/nostruct-align/1bia_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bia_2/nostruct-align/1bia_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bia_2/nostruct-align/1bia_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2863/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.850342 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bia_3 id: 1bia_3 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bia_3/nostruct-align/1bia_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bia_3/nostruct-align/1bia_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bia_3/nostruct-align/1bia_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19958/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.621338 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bib id: 1bib alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bib/nostruct-align/1bib.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bib/nostruct-align/1bib.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bib/nostruct-align/1bib.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24449/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.279419 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bif id: 1bif alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bif/nostruct-align/1bif.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bif/nostruct-align/1bif.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bif/nostruct-align/1bif.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1103/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.469360 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bihA id: 1bihA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bihA/nostruct-align/1bihA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bihA/nostruct-align/1bihA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bihA/nostruct-align/1bihA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6927/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.077393 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bio id: 1bio alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bio/nostruct-align/1bio.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bio/nostruct-align/1bio.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bio/nostruct-align/1bio.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16149/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.491394 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bip id: 1bip alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bip/nostruct-align/1bip.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bip/nostruct-align/1bip.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bip/nostruct-align/1bip.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5326/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.089355 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bix id: 1bix alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bix/nostruct-align/1bix.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bix/nostruct-align/1bix.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bix/nostruct-align/1bix.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28863/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.315430 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bj4A id: 1bj4A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bj4A/nostruct-align/1bj4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bj4A/nostruct-align/1bj4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bj4A/nostruct-align/1bj4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8047/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.368469 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bj5 id: 1bj5 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bj5/nostruct-align/1bj5.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bj5/nostruct-align/1bj5.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bj5/nostruct-align/1bj5.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25672/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.809387 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bj7 id: 1bj7 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bj7/nostruct-align/1bj7.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bj7/nostruct-align/1bj7.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bj7/nostruct-align/1bj7.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7328/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.648438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bj8 id: 1bj8 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bj8/nostruct-align/1bj8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bj8/nostruct-align/1bj8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bj8/nostruct-align/1bj8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19409/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.703369 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bjaA id: 1bjaA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bjaA/nostruct-align/1bjaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bjaA/nostruct-align/1bjaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bjaA/nostruct-align/1bjaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11489/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.469421 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bjmA id: 1bjmA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bjmA/nostruct-align/1bjmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bjmA/nostruct-align/1bjmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bjmA/nostruct-align/1bjmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8694/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.695435 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bjnA id: 1bjnA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bjnA/nostruct-align/1bjnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bjnA/nostruct-align/1bjnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bjnA/nostruct-align/1bjnA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26422/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.783325 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bjoA id: 1bjoA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bjoA/nostruct-align/1bjoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bjoA/nostruct-align/1bjoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bjoA/nostruct-align/1bjoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1919/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.652405 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bjt id: 1bjt alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bjt/nostruct-align/1bjt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bjt/nostruct-align/1bjt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bjt/nostruct-align/1bjt.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9438/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.753357 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bjwA id: 1bjwA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bjwA/nostruct-align/1bjwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bjwA/nostruct-align/1bjwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bjwA/nostruct-align/1bjwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18839/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.157349 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bjx id: 1bjx alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bjx/nostruct-align/1bjx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bjx/nostruct-align/1bjx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bjx/nostruct-align/1bjx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5705/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.779419 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bk0 id: 1bk0 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bk0/nostruct-align/1bk0.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bk0/nostruct-align/1bk0.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bk0/nostruct-align/1bk0.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18847/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.920410 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bk5A id: 1bk5A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bk5A/nostruct-align/1bk5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bk5A/nostruct-align/1bk5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bk5A/nostruct-align/1bk5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9892/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.439331 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bk6A id: 1bk6A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bk6A/nostruct-align/1bk6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bk6A/nostruct-align/1bk6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bk6A/nostruct-align/1bk6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9504/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.900391 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bk7A id: 1bk7A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bk7A/nostruct-align/1bk7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bk7A/nostruct-align/1bk7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bk7A/nostruct-align/1bk7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20149/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.015381 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bkb id: 1bkb alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkb/nostruct-align/1bkb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkb/nostruct-align/1bkb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bkb/nostruct-align/1bkb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20659/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.459412 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bkcA id: 1bkcA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkcA/nostruct-align/1bkcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkcA/nostruct-align/1bkcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bkcA/nostruct-align/1bkcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23042/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.635376 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bkcE id: 1bkcE alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkcE/nostruct-align/1bkcE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkcE/nostruct-align/1bkcE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bkcE/nostruct-align/1bkcE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10835/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.371460 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bkdS id: 1bkdS alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkdS/nostruct-align/1bkdS.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkdS/nostruct-align/1bkdS.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bkdS/nostruct-align/1bkdS.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4151/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.598389 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bkf id: 1bkf alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkf/nostruct-align/1bkf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkf/nostruct-align/1bkf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bkf/nostruct-align/1bkf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19005/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.061340 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bkjA id: 1bkjA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkjA/nostruct-align/1bkjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkjA/nostruct-align/1bkjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bkjA/nostruct-align/1bkjA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12066/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.820374 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bkpA id: 1bkpA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkpA/nostruct-align/1bkpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkpA/nostruct-align/1bkpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bkpA/nostruct-align/1bkpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9492/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.510376 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bkq id: 1bkq alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkq/nostruct-align/1bkq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkq/nostruct-align/1bkq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bkq/nostruct-align/1bkq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3251/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.162476 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bkrA id: 1bkrA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkrA/nostruct-align/1bkrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkrA/nostruct-align/1bkrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bkrA/nostruct-align/1bkrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21792/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.104370 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bksA id: 1bksA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bksA/nostruct-align/1bksA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bksA/nostruct-align/1bksA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bksA/nostruct-align/1bksA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4060/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.320435 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bksB id: 1bksB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bksB/nostruct-align/1bksB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bksB/nostruct-align/1bksB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bksB/nostruct-align/1bksB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16641/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.980408 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bku id: 1bku alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bku/nostruct-align/1bku.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bku/nostruct-align/1bku.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bku/nostruct-align/1bku.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9085/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.878357 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bkzA id: 1bkzA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkzA/nostruct-align/1bkzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkzA/nostruct-align/1bkzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bkzA/nostruct-align/1bkzA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16707/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.358398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bl0A id: 1bl0A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bl0A/nostruct-align/1bl0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bl0A/nostruct-align/1bl0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bl0A/nostruct-align/1bl0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16197/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.173340 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bl1 id: 1bl1 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bl1/nostruct-align/1bl1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bl1/nostruct-align/1bl1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bl1/nostruct-align/1bl1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20985/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.556458 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bl8A id: 1bl8A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bl8A/nostruct-align/1bl8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bl8A/nostruct-align/1bl8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bl8A/nostruct-align/1bl8A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26652/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.475464 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ble id: 1ble alignment found: /projects/compbio/experiments/models.97/pdb/1b/1ble/nostruct-align/1ble.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1ble/nostruct-align/1ble.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1ble/nostruct-align/1ble.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15520/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.492432 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bli id: 1bli alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bli/nostruct-align/1bli.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bli/nostruct-align/1bli.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bli/nostruct-align/1bli.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29073/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.176392 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1blxA id: 1blxA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1blxA/nostruct-align/1blxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1blxA/nostruct-align/1blxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1blxA/nostruct-align/1blxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6156/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.314453 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bm4 id: 1bm4 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bm4/nostruct-align/1bm4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bm4/nostruct-align/1bm4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bm4/nostruct-align/1bm4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9780/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.496338 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bm4A id: 1bm4A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bm4A/nostruct-align/1bm4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bm4A/nostruct-align/1bm4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bm4A/nostruct-align/1bm4A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3083/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.693420 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bm8 id: 1bm8 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bm8/nostruct-align/1bm8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bm8/nostruct-align/1bm8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bm8/nostruct-align/1bm8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23756/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.994385 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bm9A id: 1bm9A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bm9A/nostruct-align/1bm9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bm9A/nostruct-align/1bm9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bm9A/nostruct-align/1bm9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10622/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.528381 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bmdA id: 1bmdA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bmdA/nostruct-align/1bmdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bmdA/nostruct-align/1bmdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bmdA/nostruct-align/1bmdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32087/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.001404 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bmfG id: 1bmfG alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bmfG/nostruct-align/1bmfG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bmfG/nostruct-align/1bmfG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bmfG/nostruct-align/1bmfG.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10640/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.016479 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bmlC id: 1bmlC alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bmlC/nostruct-align/1bmlC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bmlC/nostruct-align/1bmlC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bmlC/nostruct-align/1bmlC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8469/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.285400 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bmtA id: 1bmtA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bmtA/nostruct-align/1bmtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bmtA/nostruct-align/1bmtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bmtA/nostruct-align/1bmtA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12434/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.937439 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bmtA_1 id: 1bmtA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bmtA_1/nostruct-align/1bmtA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bmtA_1/nostruct-align/1bmtA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bmtA_1/nostruct-align/1bmtA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18879/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.397400 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bmtA_2 id: 1bmtA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bmtA_2/nostruct-align/1bmtA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bmtA_2/nostruct-align/1bmtA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bmtA_2/nostruct-align/1bmtA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19545/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.972351 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bmv1 id: 1bmv1 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bmv1/nostruct-align/1bmv1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bmv1/nostruct-align/1bmv1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bmv1/nostruct-align/1bmv1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23883/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.138428 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bmv2 id: 1bmv2 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bmv2/nostruct-align/1bmv2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bmv2/nostruct-align/1bmv2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bmv2/nostruct-align/1bmv2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29332/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.399475 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bmx id: 1bmx alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bmx/nostruct-align/1bmx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bmx/nostruct-align/1bmx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bmx/nostruct-align/1bmx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20477/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.296387 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bmy id: 1bmy alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bmy/nostruct-align/1bmy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bmy/nostruct-align/1bmy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bmy/nostruct-align/1bmy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11254/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.535400 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bn5 id: 1bn5 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bn5/nostruct-align/1bn5.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bn5/nostruct-align/1bn5.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bn5/nostruct-align/1bn5.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7018/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.411438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bn6A id: 1bn6A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bn6A/nostruct-align/1bn6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bn6A/nostruct-align/1bn6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bn6A/nostruct-align/1bn6A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29416/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.045410 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bn7A id: 1bn7A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bn7A/nostruct-align/1bn7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bn7A/nostruct-align/1bn7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bn7A/nostruct-align/1bn7A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20819/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.324463 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bn8A id: 1bn8A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bn8A/nostruct-align/1bn8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bn8A/nostruct-align/1bn8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bn8A/nostruct-align/1bn8A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6765/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.311401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bnb id: 1bnb alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bnb/nostruct-align/1bnb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bnb/nostruct-align/1bnb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bnb/nostruct-align/1bnb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2485/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.004333 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bncA id: 1bncA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bncA/nostruct-align/1bncA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bncA/nostruct-align/1bncA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bncA/nostruct-align/1bncA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19118/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.327454 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bncA_1 id: 1bncA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bncA_1/nostruct-align/1bncA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bncA_1/nostruct-align/1bncA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bncA_1/nostruct-align/1bncA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29553/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.751343 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bncA_2 id: 1bncA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bncA_2/nostruct-align/1bncA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bncA_2/nostruct-align/1bncA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bncA_2/nostruct-align/1bncA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27483/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.342407 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bncA_3 id: 1bncA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bncA_3/nostruct-align/1bncA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bncA_3/nostruct-align/1bncA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bncA_3/nostruct-align/1bncA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9898/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.721313 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bncB id: 1bncB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bncB/nostruct-align/1bncB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bncB/nostruct-align/1bncB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bncB/nostruct-align/1bncB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10059/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -21.953430 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bndA id: 1bndA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bndA/nostruct-align/1bndA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bndA/nostruct-align/1bndA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bndA/nostruct-align/1bndA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1639/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.953369 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bnkA id: 1bnkA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bnkA/nostruct-align/1bnkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bnkA/nostruct-align/1bnkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bnkA/nostruct-align/1bnkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30853/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.019348 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bnx id: 1bnx alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bnx/nostruct-align/1bnx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bnx/nostruct-align/1bnx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bnx/nostruct-align/1bnx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9573/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.289429 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bnxA id: 1bnxA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bnxA/nostruct-align/1bnxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bnxA/nostruct-align/1bnxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bnxA/nostruct-align/1bnxA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5183/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.299438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bo1A id: 1bo1A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bo1A/nostruct-align/1bo1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bo1A/nostruct-align/1bo1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bo1A/nostruct-align/1bo1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26464/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.605469 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bo4A id: 1bo4A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bo4A/nostruct-align/1bo4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bo4A/nostruct-align/1bo4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bo4A/nostruct-align/1bo4A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21078/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.939392 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bo4B id: 1bo4B alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bo4B/nostruct-align/1bo4B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bo4B/nostruct-align/1bo4B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bo4B/nostruct-align/1bo4B.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-16270/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.004456 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bo9 id: 1bo9 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bo9/nostruct-align/1bo9.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bo9/nostruct-align/1bo9.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bo9/nostruct-align/1bo9.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3307/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.295410 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bo9A id: 1bo9A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bo9A/nostruct-align/1bo9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bo9A/nostruct-align/1bo9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bo9A/nostruct-align/1bo9A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6275/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.884399 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bob id: 1bob alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bob/nostruct-align/1bob.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bob/nostruct-align/1bob.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bob/nostruct-align/1bob.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14513/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.982422 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1boe id: 1boe alignment found: /projects/compbio/experiments/models.97/pdb/1b/1boe/nostruct-align/1boe.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1boe/nostruct-align/1boe.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1boe/nostruct-align/1boe.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17403/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.733398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1boeA id: 1boeA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1boeA/nostruct-align/1boeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1boeA/nostruct-align/1boeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1boeA/nostruct-align/1boeA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7799/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.826355 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bolA id: 1bolA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bolA/nostruct-align/1bolA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bolA/nostruct-align/1bolA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bolA/nostruct-align/1bolA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20927/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.327393 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bom_1a1 id: 1bom_1a1 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bom_1a1/nostruct-align/1bom_1a1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bom_1a1/nostruct-align/1bom_1a1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bom_1a1/nostruct-align/1bom_1a1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25203/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.570435 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1booA id: 1booA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1booA/nostruct-align/1booA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1booA/nostruct-align/1booA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1booA/nostruct-align/1booA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5750/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.921387 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bor id: 1bor alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bor/nostruct-align/1bor.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bor/nostruct-align/1bor.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bor/nostruct-align/1bor.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5149/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.781372 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bouA id: 1bouA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bouA/nostruct-align/1bouA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bouA/nostruct-align/1bouA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bouA/nostruct-align/1bouA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27542/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.461426 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bouB id: 1bouB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bouB/nostruct-align/1bouB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bouB/nostruct-align/1bouB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bouB/nostruct-align/1bouB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13789/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.668457 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bovA id: 1bovA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bovA/nostruct-align/1bovA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bovA/nostruct-align/1bovA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bovA/nostruct-align/1bovA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1391/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.733398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bowA id: 1bowA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bowA/nostruct-align/1bowA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bowA/nostruct-align/1bowA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bowA/nostruct-align/1bowA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19584/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.225342 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1boy id: 1boy alignment found: /projects/compbio/experiments/models.97/pdb/1b/1boy/nostruct-align/1boy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1boy/nostruct-align/1boy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1boy/nostruct-align/1boy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32434/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.820313 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bp1 id: 1bp1 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bp1/nostruct-align/1bp1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bp1/nostruct-align/1bp1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bp1/nostruct-align/1bp1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21216/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.702393 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bp3A id: 1bp3A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bp3A/nostruct-align/1bp3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bp3A/nostruct-align/1bp3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bp3A/nostruct-align/1bp3A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-29927/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.889404 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bp7A id: 1bp7A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bp7A/nostruct-align/1bp7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bp7A/nostruct-align/1bp7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bp7A/nostruct-align/1bp7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30375/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.770386 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bpi id: 1bpi alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bpi/nostruct-align/1bpi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bpi/nostruct-align/1bpi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bpi/nostruct-align/1bpi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10080/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.885498 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bpoA id: 1bpoA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bpoA/nostruct-align/1bpoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bpoA/nostruct-align/1bpoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bpoA/nostruct-align/1bpoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22669/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.062378 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bpv id: 1bpv alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bpv/nostruct-align/1bpv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bpv/nostruct-align/1bpv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bpv/nostruct-align/1bpv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32335/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.722412 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bpwA id: 1bpwA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bpwA/nostruct-align/1bpwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bpwA/nostruct-align/1bpwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bpwA/nostruct-align/1bpwA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13119/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.978333 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bpyA id: 1bpyA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bpyA/nostruct-align/1bpyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bpyA/nostruct-align/1bpyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bpyA/nostruct-align/1bpyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12898/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.884460 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bq3B id: 1bq3B alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bq3B/nostruct-align/1bq3B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bq3B/nostruct-align/1bq3B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bq3B/nostruct-align/1bq3B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8636/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.170410 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bqbA id: 1bqbA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqbA/nostruct-align/1bqbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqbA/nostruct-align/1bqbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bqbA/nostruct-align/1bqbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24020/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.648438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bqcA id: 1bqcA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqcA/nostruct-align/1bqcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqcA/nostruct-align/1bqcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bqcA/nostruct-align/1bqcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14721/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.297485 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bqg id: 1bqg alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqg/nostruct-align/1bqg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqg/nostruct-align/1bqg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bqg/nostruct-align/1bqg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19450/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.764465 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bqhG id: 1bqhG alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqhG/nostruct-align/1bqhG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqhG/nostruct-align/1bqhG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bqhG/nostruct-align/1bqhG.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-28642/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.513306 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bqk id: 1bqk alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqk/nostruct-align/1bqk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqk/nostruct-align/1bqk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bqk/nostruct-align/1bqk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24395/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.344360 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bqsA id: 1bqsA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqsA/nostruct-align/1bqsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqsA/nostruct-align/1bqsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bqsA/nostruct-align/1bqsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31527/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.668335 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bqt id: 1bqt alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqt/nostruct-align/1bqt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqt/nostruct-align/1bqt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bqt/nostruct-align/1bqt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26192/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.703369 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bquA id: 1bquA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bquA/nostruct-align/1bquA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bquA/nostruct-align/1bquA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bquA/nostruct-align/1bquA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10450/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.364380 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bqv id: 1bqv alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqv/nostruct-align/1bqv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqv/nostruct-align/1bqv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bqv/nostruct-align/1bqv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9033/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.236450 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bqz id: 1bqz alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqz/nostruct-align/1bqz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqz/nostruct-align/1bqz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bqz/nostruct-align/1bqz.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1902/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.215454 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1br0A id: 1br0A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1br0A/nostruct-align/1br0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1br0A/nostruct-align/1br0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1br0A/nostruct-align/1br0A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1417/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.458374 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1br9 id: 1br9 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1br9/nostruct-align/1br9.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1br9/nostruct-align/1br9.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1br9/nostruct-align/1br9.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.211426 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1brd id: 1brd alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brd/nostruct-align/1brd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brd/nostruct-align/1brd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1brd/nostruct-align/1brd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16005/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.578369 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1brfA id: 1brfA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brfA/nostruct-align/1brfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brfA/nostruct-align/1brfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1brfA/nostruct-align/1brfA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20268/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.301392 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1brlA id: 1brlA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brlA/nostruct-align/1brlA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brlA/nostruct-align/1brlA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1brlA/nostruct-align/1brlA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27872/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.974365 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1brlB id: 1brlB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brlB/nostruct-align/1brlB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brlB/nostruct-align/1brlB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1brlB/nostruct-align/1brlB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4215/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.981384 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1brmA id: 1brmA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brmA/nostruct-align/1brmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brmA/nostruct-align/1brmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1brmA/nostruct-align/1brmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17158/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.292358 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1brnL id: 1brnL alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brnL/nostruct-align/1brnL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brnL/nostruct-align/1brnL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1brnL/nostruct-align/1brnL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-487/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.822388 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1broA id: 1broA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1broA/nostruct-align/1broA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1broA/nostruct-align/1broA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1broA/nostruct-align/1broA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5845/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.264404 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1brsD id: 1brsD alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brsD/nostruct-align/1brsD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brsD/nostruct-align/1brsD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1brsD/nostruct-align/1brsD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16147/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.061401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1brt id: 1brt alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brt/nostruct-align/1brt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brt/nostruct-align/1brt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1brt/nostruct-align/1brt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16512/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.433472 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1brwA id: 1brwA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brwA/nostruct-align/1brwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brwA/nostruct-align/1brwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1brwA/nostruct-align/1brwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-462/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.570435 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1brz id: 1brz alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brz/nostruct-align/1brz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brz/nostruct-align/1brz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1brz/nostruct-align/1brz.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11504/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.455444 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bs0A id: 1bs0A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bs0A/nostruct-align/1bs0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bs0A/nostruct-align/1bs0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bs0A/nostruct-align/1bs0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22348/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.233459 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bs2A id: 1bs2A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bs2A/nostruct-align/1bs2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bs2A/nostruct-align/1bs2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bs2A/nostruct-align/1bs2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8598/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.907471 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bs4A id: 1bs4A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bs4A/nostruct-align/1bs4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bs4A/nostruct-align/1bs4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bs4A/nostruct-align/1bs4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1581/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.977417 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bs9 id: 1bs9 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bs9/nostruct-align/1bs9.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bs9/nostruct-align/1bs9.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bs9/nostruct-align/1bs9.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17640/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.759338 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bsg id: 1bsg alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bsg/nostruct-align/1bsg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bsg/nostruct-align/1bsg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bsg/nostruct-align/1bsg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6292/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.945435 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bsjA id: 1bsjA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bsjA/nostruct-align/1bsjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bsjA/nostruct-align/1bsjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bsjA/nostruct-align/1bsjA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4511/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.815369 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bsvA id: 1bsvA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bsvA/nostruct-align/1bsvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bsvA/nostruct-align/1bsvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bsvA/nostruct-align/1bsvA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27246/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.323364 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bt0A id: 1bt0A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bt0A/nostruct-align/1bt0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bt0A/nostruct-align/1bt0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bt0A/nostruct-align/1bt0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5132/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.244385 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bt3A id: 1bt3A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bt3A/nostruct-align/1bt3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bt3A/nostruct-align/1bt3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bt3A/nostruct-align/1bt3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15338/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.306396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bt4 id: 1bt4 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bt4/nostruct-align/1bt4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bt4/nostruct-align/1bt4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bt4/nostruct-align/1bt4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4952/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.650452 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bteA id: 1bteA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bteA/nostruct-align/1bteA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bteA/nostruct-align/1bteA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bteA/nostruct-align/1bteA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3219/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.041382 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1btkA id: 1btkA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1btkA/nostruct-align/1btkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1btkA/nostruct-align/1btkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1btkA/nostruct-align/1btkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25630/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.183350 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1btkB id: 1btkB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1btkB/nostruct-align/1btkB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1btkB/nostruct-align/1btkB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1btkB/nostruct-align/1btkB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17925/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.718506 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1btl id: 1btl alignment found: /projects/compbio/experiments/models.97/pdb/1b/1btl/nostruct-align/1btl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1btl/nostruct-align/1btl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1btl/nostruct-align/1btl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12816/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.836426 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1btmA id: 1btmA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1btmA/nostruct-align/1btmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1btmA/nostruct-align/1btmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1btmA/nostruct-align/1btmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11806/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.254395 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1btn id: 1btn alignment found: /projects/compbio/experiments/models.97/pdb/1b/1btn/nostruct-align/1btn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1btn/nostruct-align/1btn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1btn/nostruct-align/1btn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7971/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.296387 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1btu id: 1btu alignment found: /projects/compbio/experiments/models.97/pdb/1b/1btu/nostruct-align/1btu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1btu/nostruct-align/1btu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1btu/nostruct-align/1btu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8104/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.642456 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bu2A id: 1bu2A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bu2A/nostruct-align/1bu2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bu2A/nostruct-align/1bu2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bu2A/nostruct-align/1bu2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9841/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.694336 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bu5A id: 1bu5A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bu5A/nostruct-align/1bu5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bu5A/nostruct-align/1bu5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bu5A/nostruct-align/1bu5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28389/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.670410 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bu7A id: 1bu7A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bu7A/nostruct-align/1bu7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bu7A/nostruct-align/1bu7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bu7A/nostruct-align/1bu7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25461/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.404419 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bucA_1 id: 1bucA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bucA_1/nostruct-align/1bucA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bucA_1/nostruct-align/1bucA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bucA_1/nostruct-align/1bucA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6997/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.623352 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bucA_2 id: 1bucA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bucA_2/nostruct-align/1bucA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bucA_2/nostruct-align/1bucA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bucA_2/nostruct-align/1bucA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3266/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.548340 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1budA id: 1budA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1budA/nostruct-align/1budA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1budA/nostruct-align/1budA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1budA/nostruct-align/1budA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8180/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.075439 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bueA id: 1bueA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bueA/nostruct-align/1bueA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bueA/nostruct-align/1bueA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bueA/nostruct-align/1bueA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20962/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.847290 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1buhB id: 1buhB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1buhB/nostruct-align/1buhB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1buhB/nostruct-align/1buhB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1buhB/nostruct-align/1buhB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-30219/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.838379 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bunB id: 1bunB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bunB/nostruct-align/1bunB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bunB/nostruct-align/1bunB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bunB/nostruct-align/1bunB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9123/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.073364 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1buoA id: 1buoA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1buoA/nostruct-align/1buoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1buoA/nostruct-align/1buoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1buoA/nostruct-align/1buoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19655/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.295410 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bupA id: 1bupA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bupA/nostruct-align/1bupA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bupA/nostruct-align/1bupA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bupA/nostruct-align/1bupA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20569/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.698425 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1burA id: 1burA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1burA/nostruct-align/1burA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1burA/nostruct-align/1burA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1burA/nostruct-align/1burA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12463/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.099365 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1burS id: 1burS alignment found: /projects/compbio/experiments/models.97/pdb/1b/1burS/nostruct-align/1burS.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1burS/nostruct-align/1burS.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1burS/nostruct-align/1burS.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8745/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.930420 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bv1 id: 1bv1 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bv1/nostruct-align/1bv1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bv1/nostruct-align/1bv1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bv1/nostruct-align/1bv1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10465/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.587402 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bvb id: 1bvb alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bvb/nostruct-align/1bvb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvb/nostruct-align/1bvb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvb/nostruct-align/1bvb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29917/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.885376 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bvh id: 1bvh alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bvh/nostruct-align/1bvh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvh/nostruct-align/1bvh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvh/nostruct-align/1bvh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31528/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.651367 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bvp1 id: 1bvp1 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bvp1/nostruct-align/1bvp1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvp1/nostruct-align/1bvp1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvp1/nostruct-align/1bvp1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-566/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.642456 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bvp1_1 id: 1bvp1_1 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bvp1_1/nostruct-align/1bvp1_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bvp1_1/nostruct-align/1bvp1_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bvp1_1/nostruct-align/1bvp1_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2783/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.267395 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bvp1_2 id: 1bvp1_2 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bvp1_2/nostruct-align/1bvp1_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bvp1_2/nostruct-align/1bvp1_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bvp1_2/nostruct-align/1bvp1_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5775/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.644409 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bvqA id: 1bvqA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-purr-12425/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.159363 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bvsB id: 1bvsB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bvsB/nostruct-align/1bvsB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvsB/nostruct-align/1bvsB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvsB/nostruct-align/1bvsB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-28136/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.233337 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bvwA id: 1bvwA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bvwA/nostruct-align/1bvwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvwA/nostruct-align/1bvwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvwA/nostruct-align/1bvwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17721/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.262451 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bvyF id: 1bvyF alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bvyF/nostruct-align/1bvyF.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvyF/nostruct-align/1bvyF.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvyF/nostruct-align/1bvyF.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5995/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.156372 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bvzA id: 1bvzA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bvzA/nostruct-align/1bvzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvzA/nostruct-align/1bvzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvzA/nostruct-align/1bvzA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13879/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.591431 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bw0A id: 1bw0A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bw0A/nostruct-align/1bw0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bw0A/nostruct-align/1bw0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bw0A/nostruct-align/1bw0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17264/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.580322 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bw3 id: 1bw3 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bw3/nostruct-align/1bw3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bw3/nostruct-align/1bw3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bw3/nostruct-align/1bw3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10313/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.002319 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bw4 id: 1bw4 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bw4/nostruct-align/1bw4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bw4/nostruct-align/1bw4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bw4/nostruct-align/1bw4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15615/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.002319 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bw6 id: 1bw6 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bw6/nostruct-align/1bw6.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bw6/nostruct-align/1bw6.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bw6/nostruct-align/1bw6.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22183/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.732422 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bw6A id: 1bw6A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bw6A/nostruct-align/1bw6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bw6A/nostruct-align/1bw6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bw6A/nostruct-align/1bw6A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32560/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.732422 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bw8 id: 1bw8 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bw8/nostruct-align/1bw8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bw8/nostruct-align/1bw8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bw8/nostruct-align/1bw8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9134/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.070435 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bw8A id: 1bw8A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bw8A/nostruct-align/1bw8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bw8A/nostruct-align/1bw8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bw8A/nostruct-align/1bw8A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10963/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.751343 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bw9A id: 1bw9A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bw9A/nostruct-align/1bw9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bw9A/nostruct-align/1bw9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bw9A/nostruct-align/1bw9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24875/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -78.118408 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bwx id: 1bwx alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bwx/nostruct-align/1bwx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bwx/nostruct-align/1bwx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bwx/nostruct-align/1bwx.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25889/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.507446 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bwzA id: 1bwzA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bwzA/nostruct-align/1bwzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bwzA/nostruct-align/1bwzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bwzA/nostruct-align/1bwzA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14982/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.478455 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bx4A id: 1bx4A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bx4A/nostruct-align/1bx4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bx4A/nostruct-align/1bx4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bx4A/nostruct-align/1bx4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14484/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.689453 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bx7 id: 1bx7 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bx7/nostruct-align/1bx7.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bx7/nostruct-align/1bx7.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bx7/nostruct-align/1bx7.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20301/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.688477 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bxaA id: 1bxaA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxaA/nostruct-align/1bxaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxaA/nostruct-align/1bxaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxaA/nostruct-align/1bxaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10438/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.379395 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bxdA id: 1bxdA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxdA/nostruct-align/1bxdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxdA/nostruct-align/1bxdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxdA/nostruct-align/1bxdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12889/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.565430 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bxeA id: 1bxeA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxeA/nostruct-align/1bxeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxeA/nostruct-align/1bxeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxeA/nostruct-align/1bxeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10932/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.697449 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bxiB id: 1bxiB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxiB/nostruct-align/1bxiB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxiB/nostruct-align/1bxiB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxiB/nostruct-align/1bxiB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13537/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.784424 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bxkA id: 1bxkA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxkA/nostruct-align/1bxkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxkA/nostruct-align/1bxkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxkA/nostruct-align/1bxkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15762/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.196411 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bxm id: 1bxm alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxm/nostruct-align/1bxm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxm/nostruct-align/1bxm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxm/nostruct-align/1bxm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22237/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.909363 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bxoA id: 1bxoA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxoA/nostruct-align/1bxoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxoA/nostruct-align/1bxoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxoA/nostruct-align/1bxoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24734/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.592407 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bxrA id: 1bxrA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxrA/nostruct-align/1bxrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxrA/nostruct-align/1bxrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxrA/nostruct-align/1bxrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10700/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.670349 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bxvA id: 1bxvA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxvA/nostruct-align/1bxvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxvA/nostruct-align/1bxvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxvA/nostruct-align/1bxvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12874/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.543457 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bxwA id: 1bxwA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxwA/nostruct-align/1bxwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxwA/nostruct-align/1bxwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxwA/nostruct-align/1bxwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24182/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.659424 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bxxA id: 1bxxA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxxA/nostruct-align/1bxxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxxA/nostruct-align/1bxxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxxA/nostruct-align/1bxxA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18767/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.751343 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bxyA id: 1bxyA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxyA/nostruct-align/1bxyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxyA/nostruct-align/1bxyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxyA/nostruct-align/1bxyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27921/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.434387 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1by1A id: 1by1A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1by1A/nostruct-align/1by1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1by1A/nostruct-align/1by1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1by1A/nostruct-align/1by1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7753/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.451416 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1by2 id: 1by2 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1by2/nostruct-align/1by2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1by2/nostruct-align/1by2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1by2/nostruct-align/1by2.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20476/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.030457 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1by3A id: 1by3A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1by3A/nostruct-align/1by3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1by3A/nostruct-align/1by3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1by3A/nostruct-align/1by3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7689/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.935425 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1by5A id: 1by5A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1by5A/nostruct-align/1by5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1by5A/nostruct-align/1by5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1by5A/nostruct-align/1by5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11828/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.551392 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1byb id: 1byb alignment found: /projects/compbio/experiments/models.97/pdb/1b/1byb/nostruct-align/1byb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1byb/nostruct-align/1byb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1byb/nostruct-align/1byb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22858/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.577332 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1byfA id: 1byfA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1byfA/nostruct-align/1byfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1byfA/nostruct-align/1byfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1byfA/nostruct-align/1byfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11133/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.288452 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1byi id: 1byi alignment found: /projects/compbio/experiments/models.97/pdb/1b/1byi/nostruct-align/1byi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1byi/nostruct-align/1byi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1byi/nostruct-align/1byi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17034/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.765381 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bykA id: 1bykA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bykA/nostruct-align/1bykA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bykA/nostruct-align/1bykA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bykA/nostruct-align/1bykA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14429/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.768372 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1byl id: 1byl alignment found: /projects/compbio/experiments/models.97/pdb/1b/1byl/nostruct-align/1byl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1byl/nostruct-align/1byl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1byl/nostruct-align/1byl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10095/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.554382 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bylA id: 1bylA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bylA/nostruct-align/1bylA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bylA/nostruct-align/1bylA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bylA/nostruct-align/1bylA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21834/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.580322 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1byqA id: 1byqA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1byqA/nostruct-align/1byqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1byqA/nostruct-align/1byqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1byqA/nostruct-align/1byqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31735/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.076355 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1byrA id: 1byrA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1byrA/nostruct-align/1byrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1byrA/nostruct-align/1byrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1byrA/nostruct-align/1byrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14212/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.854492 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1byuA id: 1byuA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1byuA/nostruct-align/1byuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1byuA/nostruct-align/1byuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1byuA/nostruct-align/1byuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16592/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.889404 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bywA id: 1bywA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bywA/nostruct-align/1bywA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bywA/nostruct-align/1bywA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bywA/nostruct-align/1bywA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9970/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.635376 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bza id: 1bza alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bza/nostruct-align/1bza.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bza/nostruct-align/1bza.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bza/nostruct-align/1bza.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17884/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.587402 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bzb id: 1bzb alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bzb/nostruct-align/1bzb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bzb/nostruct-align/1bzb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bzb/nostruct-align/1bzb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23033/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.878357 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bzbA id: 1bzbA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bzbA/nostruct-align/1bzbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bzbA/nostruct-align/1bzbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bzbA/nostruct-align/1bzbA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8520/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.878357 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bzg id: 1bzg alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bzg/nostruct-align/1bzg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bzg/nostruct-align/1bzg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bzg/nostruct-align/1bzg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17568/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.213501 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bzk id: 1bzk alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bzk/nostruct-align/1bzk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bzk/nostruct-align/1bzk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bzk/nostruct-align/1bzk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28700/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.488403 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bzkA id: 1bzkA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bzkA/nostruct-align/1bzkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bzkA/nostruct-align/1bzkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bzkA/nostruct-align/1bzkA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25522/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.415344 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bzpA id: 1bzpA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bzpA/nostruct-align/1bzpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bzpA/nostruct-align/1bzpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bzpA/nostruct-align/1bzpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-757/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.140503 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1bzyA id: 1bzyA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bzyA/nostruct-align/1bzyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bzyA/nostruct-align/1bzyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bzyA/nostruct-align/1bzyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-361/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.832397 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c05A id: 1c05A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c05A/nostruct-align/1c05A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c05A/nostruct-align/1c05A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c05A/nostruct-align/1c05A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12670/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.974365 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c0aA id: 1c0aA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c0aA/nostruct-align/1c0aA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c0aA/nostruct-align/1c0aA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c0aA/nostruct-align/1c0aA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1110/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.142456 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c17M id: 1c17M alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c17M/nostruct-align/1c17M.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c17M/nostruct-align/1c17M.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c17M/nostruct-align/1c17M.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19730/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.630493 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c1gA id: 1c1gA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c1gA/nostruct-align/1c1gA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c1gA/nostruct-align/1c1gA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c1gA/nostruct-align/1c1gA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25137/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -43.598511 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c1gB id: 1c1gB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c1gB/nostruct-align/1c1gB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c1gB/nostruct-align/1c1gB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c1gB/nostruct-align/1c1gB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2366/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -43.598511 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c1gC id: 1c1gC alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c1gC/nostruct-align/1c1gC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c1gC/nostruct-align/1c1gC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c1gC/nostruct-align/1c1gC.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22600/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -44.533447 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c1gD id: 1c1gD alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c1gD/nostruct-align/1c1gD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c1gD/nostruct-align/1c1gD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c1gD/nostruct-align/1c1gD.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6484/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -44.533447 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c1kA id: 1c1kA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c1kA/nostruct-align/1c1kA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c1kA/nostruct-align/1c1kA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c1kA/nostruct-align/1c1kA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21328/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.516357 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c1lA id: 1c1lA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c1lA/nostruct-align/1c1lA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c1lA/nostruct-align/1c1lA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c1lA/nostruct-align/1c1lA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12688/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.488403 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c1yB id: 1c1yB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c1yB/nostruct-align/1c1yB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c1yB/nostruct-align/1c1yB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c1yB/nostruct-align/1c1yB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13302/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.623413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c20A id: 1c20A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c20A/nostruct-align/1c20A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c20A/nostruct-align/1c20A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c20A/nostruct-align/1c20A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20363/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.014404 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c24A id: 1c24A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c24A/nostruct-align/1c24A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c24A/nostruct-align/1c24A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c24A/nostruct-align/1c24A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17903/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.241394 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c25 id: 1c25 alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c25/nostruct-align/1c25.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c25/nostruct-align/1c25.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c25/nostruct-align/1c25.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27876/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.628418 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c28A id: 1c28A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c28A/nostruct-align/1c28A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c28A/nostruct-align/1c28A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c28A/nostruct-align/1c28A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23878/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.780396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c2aA id: 1c2aA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c2aA/nostruct-align/1c2aA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c2aA/nostruct-align/1c2aA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c2aA/nostruct-align/1c2aA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20035/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.289368 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c2rA id: 1c2rA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c2rA/nostruct-align/1c2rA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c2rA/nostruct-align/1c2rA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c2rA/nostruct-align/1c2rA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19741/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.248413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c2uA id: 1c2uA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c2uA/nostruct-align/1c2uA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c2uA/nostruct-align/1c2uA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c2uA/nostruct-align/1c2uA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14482/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.022400 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c3cA id: 1c3cA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3cA/nostruct-align/1c3cA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3cA/nostruct-align/1c3cA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3cA/nostruct-align/1c3cA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25455/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.141479 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c3d id: 1c3d alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3d/nostruct-align/1c3d.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3d/nostruct-align/1c3d.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3d/nostruct-align/1c3d.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6653/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.793457 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c3jA id: 1c3jA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3jA/nostruct-align/1c3jA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3jA/nostruct-align/1c3jA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3jA/nostruct-align/1c3jA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32392/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.169373 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c3mA id: 1c3mA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3mA/nostruct-align/1c3mA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3mA/nostruct-align/1c3mA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3mA/nostruct-align/1c3mA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1999/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.192505 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c3oA id: 1c3oA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3oA/nostruct-align/1c3oA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3oA/nostruct-align/1c3oA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3oA/nostruct-align/1c3oA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13234/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.457458 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c3oB id: 1c3oB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3oB/nostruct-align/1c3oB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3oB/nostruct-align/1c3oB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3oB/nostruct-align/1c3oB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13021/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.044434 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c3oC id: 1c3oC alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3oC/nostruct-align/1c3oC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3oC/nostruct-align/1c3oC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3oC/nostruct-align/1c3oC.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27344/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.549377 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c3oE id: 1c3oE alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3oE/nostruct-align/1c3oE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3oE/nostruct-align/1c3oE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3oE/nostruct-align/1c3oE.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19143/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.084473 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c3oG id: 1c3oG alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3oG/nostruct-align/1c3oG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3oG/nostruct-align/1c3oG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3oG/nostruct-align/1c3oG.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2557/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.089417 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c3pA id: 1c3pA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3pA/nostruct-align/1c3pA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3pA/nostruct-align/1c3pA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3pA/nostruct-align/1c3pA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4873/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.763367 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c3qA id: 1c3qA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3qA/nostruct-align/1c3qA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3qA/nostruct-align/1c3qA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3qA/nostruct-align/1c3qA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27182/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.973450 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c3wA id: 1c3wA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3wA/nostruct-align/1c3wA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3wA/nostruct-align/1c3wA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3wA/nostruct-align/1c3wA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3687/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.714355 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c3yA id: 1c3yA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3yA/nostruct-align/1c3yA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3yA/nostruct-align/1c3yA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3yA/nostruct-align/1c3yA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7822/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.497437 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c4eA id: 1c4eA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c4eA/nostruct-align/1c4eA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c4eA/nostruct-align/1c4eA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c4eA/nostruct-align/1c4eA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2446/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.835449 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c4xA id: 1c4xA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c4xA/nostruct-align/1c4xA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c4xA/nostruct-align/1c4xA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c4xA/nostruct-align/1c4xA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1651/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.834351 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c4zA id: 1c4zA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c4zA/nostruct-align/1c4zA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c4zA/nostruct-align/1c4zA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c4zA/nostruct-align/1c4zA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20381/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.116455 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c52 id: 1c52 alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c52/nostruct-align/1c52.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c52/nostruct-align/1c52.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c52/nostruct-align/1c52.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30475/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.074463 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c53 id: 1c53 alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c53/nostruct-align/1c53.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c53/nostruct-align/1c53.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c53/nostruct-align/1c53.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2769/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.340332 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c5a id: 1c5a alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c5a/nostruct-align/1c5a.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c5a/nostruct-align/1c5a.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c5a/nostruct-align/1c5a.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-2823/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.863403 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c5eA id: 1c5eA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c5eA/nostruct-align/1c5eA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c5eA/nostruct-align/1c5eA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c5eA/nostruct-align/1c5eA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10007/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.585388 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c75A id: 1c75A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c75A/nostruct-align/1c75A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c75A/nostruct-align/1c75A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c75A/nostruct-align/1c75A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16321/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.800293 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c8zA id: 1c8zA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c8zA/nostruct-align/1c8zA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c8zA/nostruct-align/1c8zA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c8zA/nostruct-align/1c8zA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16451/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.189392 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c94A id: 1c94A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c94A/nostruct-align/1c94A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c94A/nostruct-align/1c94A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c94A/nostruct-align/1c94A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6943/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.558472 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c9fA id: 1c9fA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c9fA/nostruct-align/1c9fA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c9fA/nostruct-align/1c9fA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c9fA/nostruct-align/1c9fA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9738/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.119446 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c9kB id: 1c9kB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c9kB/nostruct-align/1c9kB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c9kB/nostruct-align/1c9kB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c9kB/nostruct-align/1c9kB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22999/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.909424 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c9oA id: 1c9oA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c9oA/nostruct-align/1c9oA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c9oA/nostruct-align/1c9oA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c9oA/nostruct-align/1c9oA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10101/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.454346 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1c9uA id: 1c9uA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c9uA/nostruct-align/1c9uA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c9uA/nostruct-align/1c9uA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c9uA/nostruct-align/1c9uA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19268/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.010498 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ca1 id: 1ca1 alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ca1/nostruct-align/1ca1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ca1/nostruct-align/1ca1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ca1/nostruct-align/1ca1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9816/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.851440 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ca4A id: 1ca4A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ca4A/nostruct-align/1ca4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ca4A/nostruct-align/1ca4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ca4A/nostruct-align/1ca4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20334/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.725342 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ca9A id: 1ca9A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ca9A/nostruct-align/1ca9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ca9A/nostruct-align/1ca9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ca9A/nostruct-align/1ca9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29274/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.012451 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1caj id: 1caj alignment found: /projects/compbio/experiments/models.97/pdb/1c/1caj/nostruct-align/1caj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1caj/nostruct-align/1caj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1caj/nostruct-align/1caj.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30674/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.164307 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cauA id: 1cauA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cauA/nostruct-align/1cauA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cauA/nostruct-align/1cauA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cauA/nostruct-align/1cauA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25294/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.754395 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cauB id: 1cauB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cauB/nostruct-align/1cauB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cauB/nostruct-align/1cauB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cauB/nostruct-align/1cauB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23282/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.118408 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cawB id: 1cawB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cawB/nostruct-align/1cawB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cawB/nostruct-align/1cawB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cawB/nostruct-align/1cawB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13400/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.712402 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1caxB id: 1caxB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1caxB/nostruct-align/1caxB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1caxB/nostruct-align/1caxB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1caxB/nostruct-align/1caxB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26345/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.986450 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cb0A id: 1cb0A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cb0A/nostruct-align/1cb0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cb0A/nostruct-align/1cb0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cb0A/nostruct-align/1cb0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26603/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.676392 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cb6A id: 1cb6A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cb6A/nostruct-align/1cb6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cb6A/nostruct-align/1cb6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cb6A/nostruct-align/1cb6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4671/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.046387 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cb7B id: 1cb7B alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cb7B/nostruct-align/1cb7B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cb7B/nostruct-align/1cb7B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cb7B/nostruct-align/1cb7B.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19122/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.528381 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cb8A id: 1cb8A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cb8A/nostruct-align/1cb8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cb8A/nostruct-align/1cb8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cb8A/nostruct-align/1cb8A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2719/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.161377 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cbf id: 1cbf alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cbf/nostruct-align/1cbf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cbf/nostruct-align/1cbf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cbf/nostruct-align/1cbf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21466/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.244446 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cbg id: 1cbg alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cbg/nostruct-align/1cbg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cbg/nostruct-align/1cbg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cbg/nostruct-align/1cbg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5977/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.431335 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cbh id: 1cbh alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cbh/nostruct-align/1cbh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cbh/nostruct-align/1cbh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cbh/nostruct-align/1cbh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18023/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.800354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cbn id: 1cbn alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cbn/nostruct-align/1cbn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cbn/nostruct-align/1cbn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cbn/nostruct-align/1cbn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19424/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.589355 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cbp id: 1cbp alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cbp/nostruct-align/1cbp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cbp/nostruct-align/1cbp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cbp/nostruct-align/1cbp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18202/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.031494 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cbs id: 1cbs alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cbs/nostruct-align/1cbs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cbs/nostruct-align/1cbs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cbs/nostruct-align/1cbs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-412/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.081299 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cbuA id: 1cbuA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cbuA/nostruct-align/1cbuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cbuA/nostruct-align/1cbuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cbuA/nostruct-align/1cbuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6165/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.909424 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cby id: 1cby alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cby/nostruct-align/1cby.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cby/nostruct-align/1cby.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cby/nostruct-align/1cby.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8991/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.144348 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cc5 id: 1cc5 alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cc5/nostruct-align/1cc5.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cc5/nostruct-align/1cc5.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cc5/nostruct-align/1cc5.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5459/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.291382 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cc8A id: 1cc8A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cc8A/nostruct-align/1cc8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cc8A/nostruct-align/1cc8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cc8A/nostruct-align/1cc8A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29328/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.540405 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ccr id: 1ccr alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ccr/nostruct-align/1ccr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ccr/nostruct-align/1ccr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ccr/nostruct-align/1ccr.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14887/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.980347 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ccwA id: 1ccwA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ccwA/nostruct-align/1ccwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ccwA/nostruct-align/1ccwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ccwA/nostruct-align/1ccwA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1785/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.064453 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ccwB id: 1ccwB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ccwB/nostruct-align/1ccwB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ccwB/nostruct-align/1ccwB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ccwB/nostruct-align/1ccwB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23017/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.528381 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cczA id: 1cczA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cczA/nostruct-align/1cczA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cczA/nostruct-align/1cczA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cczA/nostruct-align/1cczA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1782/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.894409 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cd1A id: 1cd1A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cd1A/nostruct-align/1cd1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cd1A/nostruct-align/1cd1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cd1A/nostruct-align/1cd1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8721/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.450317 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cd31 id: 1cd31 alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cd31/nostruct-align/1cd31.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cd31/nostruct-align/1cd31.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cd31/nostruct-align/1cd31.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17058/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.437439 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cd3B id: 1cd3B alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cd3B/nostruct-align/1cd3B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cd3B/nostruct-align/1cd3B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cd3B/nostruct-align/1cd3B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23258/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.299438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cd8 id: 1cd8 alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cd8/nostruct-align/1cd8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cd8/nostruct-align/1cd8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cd8/nostruct-align/1cd8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20838/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.333374 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cd9C id: 1cd9C alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cd9C/nostruct-align/1cd9C.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cd9C/nostruct-align/1cd9C.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cd9C/nostruct-align/1cd9C.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32517/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.187378 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cdcA id: 1cdcA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdcA/nostruct-align/1cdcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdcA/nostruct-align/1cdcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cdcA/nostruct-align/1cdcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27370/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.584351 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cdcB id: 1cdcB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdcB/nostruct-align/1cdcB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdcB/nostruct-align/1cdcB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cdcB/nostruct-align/1cdcB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22765/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.581421 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cdg_1 id: 1cdg_1 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cdg_1/nostruct-align/1cdg_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cdg_1/nostruct-align/1cdg_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1cdg_1/nostruct-align/1cdg_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6722/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.070374 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cdg_2 id: 1cdg_2 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cdg_2/nostruct-align/1cdg_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cdg_2/nostruct-align/1cdg_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1cdg_2/nostruct-align/1cdg_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21082/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.482422 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cdg_3 id: 1cdg_3 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cdg_3/nostruct-align/1cdg_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cdg_3/nostruct-align/1cdg_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1cdg_3/nostruct-align/1cdg_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30634/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.140381 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cdg_4 id: 1cdg_4 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cdg_4/nostruct-align/1cdg_4.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cdg_4/nostruct-align/1cdg_4.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1cdg_4/nostruct-align/1cdg_4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7233/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.073364 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cdi id: 1cdi alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdi/nostruct-align/1cdi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdi/nostruct-align/1cdi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cdi/nostruct-align/1cdi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26281/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.085327 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cdkA id: 1cdkA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdkA/nostruct-align/1cdkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdkA/nostruct-align/1cdkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cdkA/nostruct-align/1cdkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16105/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.226440 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cdp id: 1cdp alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdp/nostruct-align/1cdp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdp/nostruct-align/1cdp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cdp/nostruct-align/1cdp.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19312/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.758423 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cdq id: 1cdq alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdq/nostruct-align/1cdq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdq/nostruct-align/1cdq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cdq/nostruct-align/1cdq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9093/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.673401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cds id: 1cds alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cds/nostruct-align/1cds.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cds/nostruct-align/1cds.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cds/nostruct-align/1cds.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13366/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.673401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cdwA id: 1cdwA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdwA/nostruct-align/1cdwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdwA/nostruct-align/1cdwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cdwA/nostruct-align/1cdwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13494/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.385376 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cdy id: 1cdy alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdy/nostruct-align/1cdy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdy/nostruct-align/1cdy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cdy/nostruct-align/1cdy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17303/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.920410 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cdzA id: 1cdzA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdzA/nostruct-align/1cdzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdzA/nostruct-align/1cdzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cdzA/nostruct-align/1cdzA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-138/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.219360 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ce0A id: 1ce0A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ce0A/nostruct-align/1ce0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ce0A/nostruct-align/1ce0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ce0A/nostruct-align/1ce0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5605/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.473389 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ce3A id: 1ce3A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ce3A/nostruct-align/1ce3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ce3A/nostruct-align/1ce3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ce3A/nostruct-align/1ce3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12646/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.435364 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ce4A id: 1ce4A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ce4A/nostruct-align/1ce4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ce4A/nostruct-align/1ce4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ce4A/nostruct-align/1ce4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20294/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.050354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ce9C id: 1ce9C alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ce9C/nostruct-align/1ce9C.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ce9C/nostruct-align/1ce9C.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ce9C/nostruct-align/1ce9C.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4846/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.560425 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cec id: 1cec alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cec/nostruct-align/1cec.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cec/nostruct-align/1cec.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cec/nostruct-align/1cec.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31869/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.232422 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ceeB id: 1ceeB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ceeB/nostruct-align/1ceeB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ceeB/nostruct-align/1ceeB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ceeB/nostruct-align/1ceeB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27195/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.377319 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cei id: 1cei alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cei/nostruct-align/1cei.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cei/nostruct-align/1cei.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cei/nostruct-align/1cei.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9886/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.279419 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1celA id: 1celA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1celA/nostruct-align/1celA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1celA/nostruct-align/1celA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1celA/nostruct-align/1celA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2441/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.781372 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cem id: 1cem alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cem/nostruct-align/1cem.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cem/nostruct-align/1cem.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cem/nostruct-align/1cem.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2306/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.182373 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ceo id: 1ceo alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ceo/nostruct-align/1ceo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ceo/nostruct-align/1ceo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ceo/nostruct-align/1ceo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1858/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.896484 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ceqA id: 1ceqA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ceqA/nostruct-align/1ceqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ceqA/nostruct-align/1ceqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ceqA/nostruct-align/1ceqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4193/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.522461 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ceuA id: 1ceuA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ceuA/nostruct-align/1ceuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ceuA/nostruct-align/1ceuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ceuA/nostruct-align/1ceuA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11768/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.922363 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cewI id: 1cewI alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cewI/nostruct-align/1cewI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cewI/nostruct-align/1cewI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cewI/nostruct-align/1cewI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14792/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.142456 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cex id: 1cex alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cex/nostruct-align/1cex.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cex/nostruct-align/1cex.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cex/nostruct-align/1cex.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7014/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.926331 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cezA id: 1cezA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cezA/nostruct-align/1cezA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cezA/nostruct-align/1cezA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cezA/nostruct-align/1cezA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1512/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.381348 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cf1A id: 1cf1A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cf1A/nostruct-align/1cf1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cf1A/nostruct-align/1cf1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cf1A/nostruct-align/1cf1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3292/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.230347 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cf4B id: 1cf4B alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cf4B/nostruct-align/1cf4B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cf4B/nostruct-align/1cf4B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cf4B/nostruct-align/1cf4B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27160/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.383423 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cf7A id: 1cf7A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cf7A/nostruct-align/1cf7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cf7A/nostruct-align/1cf7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cf7A/nostruct-align/1cf7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20396/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.686401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cf7B id: 1cf7B alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cf7B/nostruct-align/1cf7B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cf7B/nostruct-align/1cf7B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cf7B/nostruct-align/1cf7B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22020/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.356384 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cf9A id: 1cf9A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cf9A/nostruct-align/1cf9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cf9A/nostruct-align/1cf9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cf9A/nostruct-align/1cf9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28520/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.300415 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cfb id: 1cfb alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cfb/nostruct-align/1cfb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cfb/nostruct-align/1cfb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cfb/nostruct-align/1cfb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31449/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.340454 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cfb_1 id: 1cfb_1 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cfb_1/nostruct-align/1cfb_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cfb_1/nostruct-align/1cfb_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1cfb_1/nostruct-align/1cfb_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16029/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.505371 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cfb_2 id: 1cfb_2 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cfb_2/nostruct-align/1cfb_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cfb_2/nostruct-align/1cfb_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1cfb_2/nostruct-align/1cfb_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13622/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.967407 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cfe id: 1cfe alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cfe/nostruct-align/1cfe.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cfe/nostruct-align/1cfe.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cfe/nostruct-align/1cfe.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16086/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.037476 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cfh id: 1cfh alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cfh/nostruct-align/1cfh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cfh/nostruct-align/1cfh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cfh/nostruct-align/1cfh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21249/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.252441 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cfi id: 1cfi alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cfi/nostruct-align/1cfi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cfi/nostruct-align/1cfi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cfi/nostruct-align/1cfi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27664/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.252441 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cfr id: 1cfr alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cfr/nostruct-align/1cfr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cfr/nostruct-align/1cfr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cfr/nostruct-align/1cfr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12336/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.664368 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cfyA id: 1cfyA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cfyA/nostruct-align/1cfyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cfyA/nostruct-align/1cfyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cfyA/nostruct-align/1cfyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31258/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.379395 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cfzA id: 1cfzA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cfzA/nostruct-align/1cfzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cfzA/nostruct-align/1cfzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cfzA/nostruct-align/1cfzA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5535/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.024353 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cg2A id: 1cg2A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cg2A/nostruct-align/1cg2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cg2A/nostruct-align/1cg2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cg2A/nostruct-align/1cg2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9303/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.106445 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cg5A id: 1cg5A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cg5A/nostruct-align/1cg5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cg5A/nostruct-align/1cg5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cg5A/nostruct-align/1cg5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18448/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.820435 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cg5B id: 1cg5B alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cg5B/nostruct-align/1cg5B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cg5B/nostruct-align/1cg5B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cg5B/nostruct-align/1cg5B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27627/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.812378 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cgdA id: 1cgdA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cgdA/nostruct-align/1cgdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cgdA/nostruct-align/1cgdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cgdA/nostruct-align/1cgdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20496/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.357422 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cghA id: 1cghA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cghA/nostruct-align/1cghA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cghA/nostruct-align/1cghA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cghA/nostruct-align/1cghA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5529/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.008362 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cgo id: 1cgo alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cgo/nostruct-align/1cgo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cgo/nostruct-align/1cgo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cgo/nostruct-align/1cgo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31018/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.389404 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cgpA_1 id: 1cgpA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cgpA_1/nostruct-align/1cgpA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cgpA_1/nostruct-align/1cgpA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1cgpA_1/nostruct-align/1cgpA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14419/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.276428 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cgpA_2 id: 1cgpA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cgpA_2/nostruct-align/1cgpA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cgpA_2/nostruct-align/1cgpA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1cgpA_2/nostruct-align/1cgpA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-79/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.319458 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cgt id: 1cgt alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cgt/nostruct-align/1cgt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cgt/nostruct-align/1cgt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cgt/nostruct-align/1cgt.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28996/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.148438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ch6A id: 1ch6A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ch6A/nostruct-align/1ch6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ch6A/nostruct-align/1ch6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ch6A/nostruct-align/1ch6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30360/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.548462 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1chc id: 1chc alignment found: /projects/compbio/experiments/models.97/pdb/1c/1chc/nostruct-align/1chc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1chc/nostruct-align/1chc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1chc/nostruct-align/1chc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19220/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.290405 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1chd id: 1chd alignment found: /projects/compbio/experiments/models.97/pdb/1c/1chd/nostruct-align/1chd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1chd/nostruct-align/1chd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1chd/nostruct-align/1chd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2692/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.810364 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1chkA id: 1chkA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1chkA/nostruct-align/1chkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1chkA/nostruct-align/1chkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1chkA/nostruct-align/1chkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8020/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.110352 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1chl id: 1chl alignment found: /projects/compbio/experiments/models.97/pdb/1c/1chl/nostruct-align/1chl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1chl/nostruct-align/1chl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1chl/nostruct-align/1chl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16478/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.781372 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1chmA id: 1chmA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1chmA/nostruct-align/1chmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1chmA/nostruct-align/1chmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1chmA/nostruct-align/1chmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20731/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.397339 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1chmA_1 id: 1chmA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1chmA_1/nostruct-align/1chmA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1chmA_1/nostruct-align/1chmA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1chmA_1/nostruct-align/1chmA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31669/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.402466 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1chmA_2 id: 1chmA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1chmA_2/nostruct-align/1chmA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1chmA_2/nostruct-align/1chmA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1chmA_2/nostruct-align/1chmA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12087/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.065369 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1chrA id: 1chrA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1chrA/nostruct-align/1chrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1chrA/nostruct-align/1chrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1chrA/nostruct-align/1chrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28523/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.459412 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1chuA id: 1chuA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1chuA/nostruct-align/1chuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1chuA/nostruct-align/1chuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1chuA/nostruct-align/1chuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31770/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -22.524353 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ci0A id: 1ci0A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ci0A/nostruct-align/1ci0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ci0A/nostruct-align/1ci0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ci0A/nostruct-align/1ci0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2075/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.851440 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cid id: 1cid alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cid/nostruct-align/1cid.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cid/nostruct-align/1cid.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cid/nostruct-align/1cid.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2756/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.442383 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cid_1 id: 1cid_1 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cid_1/nostruct-align/1cid_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cid_1/nostruct-align/1cid_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1cid_1/nostruct-align/1cid_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7983/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.805420 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cid_2 id: 1cid_2 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cid_2/nostruct-align/1cid_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cid_2/nostruct-align/1cid_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1cid_2/nostruct-align/1cid_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18117/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.689331 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cii id: 1cii alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cii/nostruct-align/1cii.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cii/nostruct-align/1cii.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cii/nostruct-align/1cii.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5395/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -32.436401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cipA id: 1cipA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cipA/nostruct-align/1cipA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cipA/nostruct-align/1cipA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cipA/nostruct-align/1cipA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32633/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.010376 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ciy id: 1ciy alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ciy/nostruct-align/1ciy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ciy/nostruct-align/1ciy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ciy/nostruct-align/1ciy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15785/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.315308 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cjaA id: 1cjaA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cjaA/nostruct-align/1cjaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cjaA/nostruct-align/1cjaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cjaA/nostruct-align/1cjaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32497/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.190369 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cjcA id: 1cjcA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cjcA/nostruct-align/1cjcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cjcA/nostruct-align/1cjcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cjcA/nostruct-align/1cjcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16717/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -23.008423 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cjdA id: 1cjdA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cjdA/nostruct-align/1cjdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cjdA/nostruct-align/1cjdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cjdA/nostruct-align/1cjdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27269/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.328430 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cjsA id: 1cjsA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cjsA/nostruct-align/1cjsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cjsA/nostruct-align/1cjsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cjsA/nostruct-align/1cjsA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15488/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.718384 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cjwA id: 1cjwA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cjwA/nostruct-align/1cjwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cjwA/nostruct-align/1cjwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cjwA/nostruct-align/1cjwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30336/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.274414 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cjxA id: 1cjxA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cjxA/nostruct-align/1cjxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cjxA/nostruct-align/1cjxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cjxA/nostruct-align/1cjxA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27930/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.930359 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ck7A id: 1ck7A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ck7A/nostruct-align/1ck7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ck7A/nostruct-align/1ck7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ck7A/nostruct-align/1ck7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4335/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.297363 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ck9A id: 1ck9A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ck9A/nostruct-align/1ck9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ck9A/nostruct-align/1ck9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ck9A/nostruct-align/1ck9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27430/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.279358 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ckaA id: 1ckaA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ckaA/nostruct-align/1ckaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ckaA/nostruct-align/1ckaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ckaA/nostruct-align/1ckaA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26720/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.053467 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ckeA id: 1ckeA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ckeA/nostruct-align/1ckeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ckeA/nostruct-align/1ckeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ckeA/nostruct-align/1ckeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-659/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.878418 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cklB id: 1cklB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cklB/nostruct-align/1cklB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cklB/nostruct-align/1cklB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cklB/nostruct-align/1cklB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14066/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.342407 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ckmA id: 1ckmA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ckmA/nostruct-align/1ckmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ckmA/nostruct-align/1ckmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ckmA/nostruct-align/1ckmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31731/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.406372 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cknA id: 1cknA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cknA/nostruct-align/1cknA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cknA/nostruct-align/1cknA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cknA/nostruct-align/1cknA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13387/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.802368 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ckqA id: 1ckqA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ckqA/nostruct-align/1ckqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ckqA/nostruct-align/1ckqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ckqA/nostruct-align/1ckqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18581/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.810425 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cktA id: 1cktA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cktA/nostruct-align/1cktA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cktA/nostruct-align/1cktA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cktA/nostruct-align/1cktA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25602/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.153442 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ckuA id: 1ckuA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ckuA/nostruct-align/1ckuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ckuA/nostruct-align/1ckuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ckuA/nostruct-align/1ckuA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7537/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.617432 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ckv id: 1ckv alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ckv/nostruct-align/1ckv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ckv/nostruct-align/1ckv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ckv/nostruct-align/1ckv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5672/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.062378 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cl1A id: 1cl1A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cl1A/nostruct-align/1cl1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cl1A/nostruct-align/1cl1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cl1A/nostruct-align/1cl1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-913/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.026428 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cl2A id: 1cl2A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cl2A/nostruct-align/1cl2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cl2A/nostruct-align/1cl2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cl2A/nostruct-align/1cl2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27932/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.070374 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cl4A id: 1cl4A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cl4A/nostruct-align/1cl4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cl4A/nostruct-align/1cl4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cl4A/nostruct-align/1cl4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6068/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.131348 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1clc id: 1clc alignment found: /projects/compbio/experiments/models.97/pdb/1c/1clc/nostruct-align/1clc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1clc/nostruct-align/1clc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1clc/nostruct-align/1clc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3775/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.341431 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1clc_1 id: 1clc_1 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1clc_1/nostruct-align/1clc_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1clc_1/nostruct-align/1clc_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1clc_1/nostruct-align/1clc_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6264/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.744385 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1clc_2 id: 1clc_2 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1clc_2/nostruct-align/1clc_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1clc_2/nostruct-align/1clc_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1clc_2/nostruct-align/1clc_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6347/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.427429 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cleA id: 1cleA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cleA/nostruct-align/1cleA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cleA/nostruct-align/1cleA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cleA/nostruct-align/1cleA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22723/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.482300 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cliA id: 1cliA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cliA/nostruct-align/1cliA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cliA/nostruct-align/1cliA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cliA/nostruct-align/1cliA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18183/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.070435 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cll id: 1cll alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cll/nostruct-align/1cll.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cll/nostruct-align/1cll.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cll/nostruct-align/1cll.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8311/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.816406 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1clqA id: 1clqA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1clqA/nostruct-align/1clqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1clqA/nostruct-align/1clqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1clqA/nostruct-align/1clqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31423/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.733398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1clxA id: 1clxA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1clxA/nostruct-align/1clxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1clxA/nostruct-align/1clxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1clxA/nostruct-align/1clxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19992/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.444458 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cm4B id: 1cm4B alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cm4B/nostruct-align/1cm4B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cm4B/nostruct-align/1cm4B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cm4B/nostruct-align/1cm4B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17701/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.349487 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cm5A id: 1cm5A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cm5A/nostruct-align/1cm5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cm5A/nostruct-align/1cm5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cm5A/nostruct-align/1cm5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24430/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.720459 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cmaA id: 1cmaA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cmaA/nostruct-align/1cmaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cmaA/nostruct-align/1cmaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cmaA/nostruct-align/1cmaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4512/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.611389 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cmbA id: 1cmbA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cmbA/nostruct-align/1cmbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cmbA/nostruct-align/1cmbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cmbA/nostruct-align/1cmbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28897/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.603394 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cmkE id: 1cmkE alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cmkE/nostruct-align/1cmkE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cmkE/nostruct-align/1cmkE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cmkE/nostruct-align/1cmkE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10615/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.530396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cmnA id: 1cmnA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cmnA/nostruct-align/1cmnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cmnA/nostruct-align/1cmnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cmnA/nostruct-align/1cmnA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16561/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.233398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cmoA id: 1cmoA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cmoA/nostruct-align/1cmoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cmoA/nostruct-align/1cmoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cmoA/nostruct-align/1cmoA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21886/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.588379 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cmr id: 1cmr alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cmr/nostruct-align/1cmr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cmr/nostruct-align/1cmr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cmr/nostruct-align/1cmr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16633/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.314453 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cne id: 1cne alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cne/nostruct-align/1cne.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cne/nostruct-align/1cne.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cne/nostruct-align/1cne.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31429/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.258423 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cnr id: 1cnr alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cnr/nostruct-align/1cnr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cnr/nostruct-align/1cnr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cnr/nostruct-align/1cnr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31724/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.736450 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cnsA id: 1cnsA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cnsA/nostruct-align/1cnsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cnsA/nostruct-align/1cnsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cnsA/nostruct-align/1cnsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9285/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.165405 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cnt2 id: 1cnt2 alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cnt2/nostruct-align/1cnt2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cnt2/nostruct-align/1cnt2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cnt2/nostruct-align/1cnt2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1419/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.721375 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cnt3 id: 1cnt3 alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cnt3/nostruct-align/1cnt3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cnt3/nostruct-align/1cnt3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cnt3/nostruct-align/1cnt3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25906/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.451355 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cnv id: 1cnv alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cnv/nostruct-align/1cnv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cnv/nostruct-align/1cnv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cnv/nostruct-align/1cnv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28601/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.709351 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cnzA id: 1cnzA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cnzA/nostruct-align/1cnzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cnzA/nostruct-align/1cnzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cnzA/nostruct-align/1cnzA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5872/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.758423 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1co3A id: 1co3A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1co3A/nostruct-align/1co3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1co3A/nostruct-align/1co3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1co3A/nostruct-align/1co3A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13968/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.858398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1co4A id: 1co4A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1co4A/nostruct-align/1co4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1co4A/nostruct-align/1co4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1co4A/nostruct-align/1co4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30213/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.101440 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1co6A id: 1co6A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1co6A/nostruct-align/1co6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1co6A/nostruct-align/1co6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1co6A/nostruct-align/1co6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21051/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.342407 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1coaI id: 1coaI alignment found: /projects/compbio/experiments/models.97/pdb/1c/1coaI/nostruct-align/1coaI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1coaI/nostruct-align/1coaI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1coaI/nostruct-align/1coaI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20216/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.438477 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cof id: 1cof alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cof/nostruct-align/1cof.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cof/nostruct-align/1cof.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cof/nostruct-align/1cof.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12370/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.254395 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cojA id: 1cojA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cojA/nostruct-align/1cojA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cojA/nostruct-align/1cojA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cojA/nostruct-align/1cojA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32505/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.218506 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cokA id: 1cokA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cokA/nostruct-align/1cokA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cokA/nostruct-align/1cokA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cokA/nostruct-align/1cokA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23290/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.509338 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1colA id: 1colA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1colA/nostruct-align/1colA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1colA/nostruct-align/1colA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1colA/nostruct-align/1colA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20869/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.825378 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1coo id: 1coo alignment found: /projects/compbio/experiments/models.97/pdb/1c/1coo/nostruct-align/1coo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1coo/nostruct-align/1coo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1coo/nostruct-align/1coo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12238/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.918335 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1copD id: 1copD alignment found: /projects/compbio/experiments/models.97/pdb/1c/1copD/nostruct-align/1copD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1copD/nostruct-align/1copD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1copD/nostruct-align/1copD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22343/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.399475 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cor id: 1cor alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cor/nostruct-align/1cor.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cor/nostruct-align/1cor.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cor/nostruct-align/1cor.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-637/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.578491 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cot id: 1cot alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cot/nostruct-align/1cot.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cot/nostruct-align/1cot.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cot/nostruct-align/1cot.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1510/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.931396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1coy_1 id: 1coy_1 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1coy_1/nostruct-align/1coy_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1coy_1/nostruct-align/1coy_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1coy_1/nostruct-align/1coy_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4752/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -20.485474 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1coy_2 id: 1coy_2 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1coy_2/nostruct-align/1coy_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1coy_2/nostruct-align/1coy_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1coy_2/nostruct-align/1coy_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23681/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.312439 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cozA id: 1cozA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cozA/nostruct-align/1cozA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cozA/nostruct-align/1cozA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cozA/nostruct-align/1cozA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6533/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.095459 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cp2A id: 1cp2A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cp2A/nostruct-align/1cp2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cp2A/nostruct-align/1cp2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cp2A/nostruct-align/1cp2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2001/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.257385 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cpcA id: 1cpcA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cpcA/nostruct-align/1cpcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cpcA/nostruct-align/1cpcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cpcA/nostruct-align/1cpcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8245/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.742432 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cpcB id: 1cpcB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cpcB/nostruct-align/1cpcB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cpcB/nostruct-align/1cpcB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cpcB/nostruct-align/1cpcB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28938/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.903381 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cpcL id: 1cpcL alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cpcL/nostruct-align/1cpcL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cpcL/nostruct-align/1cpcL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cpcL/nostruct-align/1cpcL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4695/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.998352 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cpn id: 1cpn alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cpn/nostruct-align/1cpn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cpn/nostruct-align/1cpn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cpn/nostruct-align/1cpn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24682/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.535400 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cpo id: 1cpo alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cpo/nostruct-align/1cpo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cpo/nostruct-align/1cpo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cpo/nostruct-align/1cpo.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15331/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.880371 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cpq id: 1cpq alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cpq/nostruct-align/1cpq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cpq/nostruct-align/1cpq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cpq/nostruct-align/1cpq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11481/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.186401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cpt id: 1cpt alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cpt/nostruct-align/1cpt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cpt/nostruct-align/1cpt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cpt/nostruct-align/1cpt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20895/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.010376 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cq3A id: 1cq3A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cq3A/nostruct-align/1cq3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cq3A/nostruct-align/1cq3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cq3A/nostruct-align/1cq3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6918/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.076355 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cqeA id: 1cqeA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cqeA/nostruct-align/1cqeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cqeA/nostruct-align/1cqeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cqeA/nostruct-align/1cqeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25907/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.064453 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cqkA id: 1cqkA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cqkA/nostruct-align/1cqkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cqkA/nostruct-align/1cqkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cqkA/nostruct-align/1cqkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7787/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.570312 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cqqA id: 1cqqA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cqqA/nostruct-align/1cqqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cqqA/nostruct-align/1cqqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cqqA/nostruct-align/1cqqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3994/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.392456 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cqwA id: 1cqwA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cqwA/nostruct-align/1cqwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cqwA/nostruct-align/1cqwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cqwA/nostruct-align/1cqwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8455/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.517395 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cqxA id: 1cqxA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cqxA/nostruct-align/1cqxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cqxA/nostruct-align/1cqxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cqxA/nostruct-align/1cqxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18855/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.123413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cqyA id: 1cqyA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cqyA/nostruct-align/1cqyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cqyA/nostruct-align/1cqyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cqyA/nostruct-align/1cqyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14160/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.283325 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cr1A id: 1cr1A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cr1A/nostruct-align/1cr1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cr1A/nostruct-align/1cr1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cr1A/nostruct-align/1cr1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3998/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.197388 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cr5A id: 1cr5A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cr5A/nostruct-align/1cr5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cr5A/nostruct-align/1cr5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cr5A/nostruct-align/1cr5A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17304/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.662354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cr6B id: 1cr6B alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cr6B/nostruct-align/1cr6B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cr6B/nostruct-align/1cr6B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cr6B/nostruct-align/1cr6B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16293/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.315430 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1crl id: 1crl alignment found: /projects/compbio/experiments/models.97/pdb/1c/1crl/nostruct-align/1crl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1crl/nostruct-align/1crl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1crl/nostruct-align/1crl.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16110/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.894409 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cruA id: 1cruA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cruA/nostruct-align/1cruA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cruA/nostruct-align/1cruA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cruA/nostruct-align/1cruA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9266/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.080444 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cs0B id: 1cs0B alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cs0B/nostruct-align/1cs0B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cs0B/nostruct-align/1cs0B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cs0B/nostruct-align/1cs0B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5289/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.831421 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cs0C id: 1cs0C alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cs0C/nostruct-align/1cs0C.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cs0C/nostruct-align/1cs0C.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cs0C/nostruct-align/1cs0C.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17495/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.930359 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cs1A id: 1cs1A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cs1A/nostruct-align/1cs1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cs1A/nostruct-align/1cs1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cs1A/nostruct-align/1cs1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5073/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.069458 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cs6A id: 1cs6A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cs6A/nostruct-align/1cs6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cs6A/nostruct-align/1cs6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cs6A/nostruct-align/1cs6A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23053/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -19.168457 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cs8A id: 1cs8A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cs8A/nostruct-align/1cs8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cs8A/nostruct-align/1cs8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cs8A/nostruct-align/1cs8A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file ./tmp/tmp-build-weighted-model-alpha-6366/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.322388 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1csbB id: 1csbB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1csbB/nostruct-align/1csbB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1csbB/nostruct-align/1csbB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1csbB/nostruct-align/1csbB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26953/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.967407 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cseE id: 1cseE alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cseE/nostruct-align/1cseE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cseE/nostruct-align/1cseE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cseE/nostruct-align/1cseE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9337/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.177368 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cseI id: 1cseI alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cseI/nostruct-align/1cseI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cseI/nostruct-align/1cseI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cseI/nostruct-align/1cseI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7982/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.536438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1csgA id: 1csgA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1csgA/nostruct-align/1csgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1csgA/nostruct-align/1csgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1csgA/nostruct-align/1csgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16182/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.637451 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1csh id: 1csh alignment found: /projects/compbio/experiments/models.97/pdb/1c/1csh/nostruct-align/1csh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1csh/nostruct-align/1csh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1csh/nostruct-align/1csh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24820/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.941467 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cskA id: 1cskA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cskA/nostruct-align/1cskA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cskA/nostruct-align/1cskA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cskA/nostruct-align/1cskA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-24476/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.978394 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1csmA id: 1csmA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1csmA/nostruct-align/1csmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1csmA/nostruct-align/1csmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1csmA/nostruct-align/1csmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22790/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.193420 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1csn id: 1csn alignment found: /projects/compbio/experiments/models.97/pdb/1c/1csn/nostruct-align/1csn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1csn/nostruct-align/1csn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1csn/nostruct-align/1csn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21490/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.444336 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ct5A id: 1ct5A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ct5A/nostruct-align/1ct5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ct5A/nostruct-align/1ct5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ct5A/nostruct-align/1ct5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4571/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.897400 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ct7A id: 1ct7A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ct7A/nostruct-align/1ct7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ct7A/nostruct-align/1ct7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ct7A/nostruct-align/1ct7A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.134399 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ct9A id: 1ct9A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ct9A/nostruct-align/1ct9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ct9A/nostruct-align/1ct9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ct9A/nostruct-align/1ct9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15376/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.727417 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ctdA id: 1ctdA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ctdA/nostruct-align/1ctdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ctdA/nostruct-align/1ctdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ctdA/nostruct-align/1ctdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30572/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.703491 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ctf id: 1ctf alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ctf/nostruct-align/1ctf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ctf/nostruct-align/1ctf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ctf/nostruct-align/1ctf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14236/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.747437 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ctj id: 1ctj alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ctj/nostruct-align/1ctj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ctj/nostruct-align/1ctj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ctj/nostruct-align/1ctj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8052/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.500366 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ctl id: 1ctl alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ctl/nostruct-align/1ctl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ctl/nostruct-align/1ctl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ctl/nostruct-align/1ctl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14412/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.204407 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ctl_1 id: 1ctl_1 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctl_1/nostruct-align/1ctl_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctl_1/nostruct-align/1ctl_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1ctl_1/nostruct-align/1ctl_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24843/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.495361 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ctl_2 id: 1ctl_2 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctl_2/nostruct-align/1ctl_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctl_2/nostruct-align/1ctl_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1ctl_2/nostruct-align/1ctl_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7934/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.390442 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ctm_1 id: 1ctm_1 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctm_1/nostruct-align/1ctm_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctm_1/nostruct-align/1ctm_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1ctm_1/nostruct-align/1ctm_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27635/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.140442 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ctm_2 id: 1ctm_2 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctm_2/nostruct-align/1ctm_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctm_2/nostruct-align/1ctm_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1ctm_2/nostruct-align/1ctm_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19289/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.720459 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ctn id: 1ctn alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ctn/nostruct-align/1ctn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ctn/nostruct-align/1ctn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ctn/nostruct-align/1ctn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16543/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.926392 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ctn_1 id: 1ctn_1 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctn_1/nostruct-align/1ctn_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctn_1/nostruct-align/1ctn_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1ctn_1/nostruct-align/1ctn_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31062/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.097412 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ctn_2 id: 1ctn_2 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctn_2/nostruct-align/1ctn_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctn_2/nostruct-align/1ctn_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1ctn_2/nostruct-align/1ctn_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10081/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.024414 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ctn_3 id: 1ctn_3 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctn_3/nostruct-align/1ctn_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctn_3/nostruct-align/1ctn_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1ctn_3/nostruct-align/1ctn_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31691/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.091370 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cto id: 1cto alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cto/nostruct-align/1cto.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cto/nostruct-align/1cto.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cto/nostruct-align/1cto.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25418/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.139404 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ctqA id: 1ctqA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ctqA/nostruct-align/1ctqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ctqA/nostruct-align/1ctqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ctqA/nostruct-align/1ctqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11776/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.311401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ctt id: 1ctt alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ctt/nostruct-align/1ctt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ctt/nostruct-align/1ctt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ctt/nostruct-align/1ctt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7725/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.232361 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ctt_1 id: 1ctt_1 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctt_1/nostruct-align/1ctt_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctt_1/nostruct-align/1ctt_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1ctt_1/nostruct-align/1ctt_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13821/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.755432 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ctt_2 id: 1ctt_2 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctt_2/nostruct-align/1ctt_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctt_2/nostruct-align/1ctt_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1ctt_2/nostruct-align/1ctt_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21328/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.349487 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cunA id: 1cunA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cunA/nostruct-align/1cunA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cunA/nostruct-align/1cunA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cunA/nostruct-align/1cunA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9157/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -24.482422 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cur id: 1cur alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cur/nostruct-align/1cur.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cur/nostruct-align/1cur.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cur/nostruct-align/1cur.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32558/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.086426 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cus id: 1cus alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cus/nostruct-align/1cus.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cus/nostruct-align/1cus.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cus/nostruct-align/1cus.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7235/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.474365 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cv8 id: 1cv8 alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cv8/nostruct-align/1cv8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cv8/nostruct-align/1cv8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cv8/nostruct-align/1cv8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-247/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.295410 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cviA id: 1cviA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cviA/nostruct-align/1cviA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cviA/nostruct-align/1cviA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cviA/nostruct-align/1cviA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29151/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.274414 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cvjB id: 1cvjB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cvjB/nostruct-align/1cvjB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cvjB/nostruct-align/1cvjB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cvjB/nostruct-align/1cvjB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23791/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.430420 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cvl id: 1cvl alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cvl/nostruct-align/1cvl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cvl/nostruct-align/1cvl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cvl/nostruct-align/1cvl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29581/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.805298 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cvrA id: 1cvrA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cvrA/nostruct-align/1cvrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cvrA/nostruct-align/1cvrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cvrA/nostruct-align/1cvrA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9261/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.165405 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cvsC id: 1cvsC alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cvsC/nostruct-align/1cvsC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cvsC/nostruct-align/1cvsC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cvsC/nostruct-align/1cvsC.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5087/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.602417 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cw5A id: 1cw5A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cw5A/nostruct-align/1cw5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cw5A/nostruct-align/1cw5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cw5A/nostruct-align/1cw5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20594/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.645386 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cwpA id: 1cwpA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cwpA/nostruct-align/1cwpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cwpA/nostruct-align/1cwpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cwpA/nostruct-align/1cwpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28663/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.530334 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cwvA id: 1cwvA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cwvA/nostruct-align/1cwvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cwvA/nostruct-align/1cwvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cwvA/nostruct-align/1cwvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15289/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.677490 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cwxA id: 1cwxA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cwxA/nostruct-align/1cwxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cwxA/nostruct-align/1cwxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cwxA/nostruct-align/1cwxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6324/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.202393 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cx8B id: 1cx8B alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cx8B/nostruct-align/1cx8B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cx8B/nostruct-align/1cx8B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cx8B/nostruct-align/1cx8B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19572/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.159424 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cxlA id: 1cxlA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cxlA/nostruct-align/1cxlA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cxlA/nostruct-align/1cxlA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cxlA/nostruct-align/1cxlA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2159/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -21.049438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cxpA id: 1cxpA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cxpA/nostruct-align/1cxpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cxpA/nostruct-align/1cxpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cxpA/nostruct-align/1cxpA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26891/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.932495 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cxpC id: 1cxpC alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cxpC/nostruct-align/1cxpC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cxpC/nostruct-align/1cxpC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cxpC/nostruct-align/1cxpC.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6616/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.775391 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cxqA id: 1cxqA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cxqA/nostruct-align/1cxqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cxqA/nostruct-align/1cxqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cxqA/nostruct-align/1cxqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13348/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.311401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cxwA id: 1cxwA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cxwA/nostruct-align/1cxwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cxwA/nostruct-align/1cxwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cxwA/nostruct-align/1cxwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27852/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.029419 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cxyA id: 1cxyA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cxyA/nostruct-align/1cxyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cxyA/nostruct-align/1cxyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cxyA/nostruct-align/1cxyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28806/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.281494 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cxzB id: 1cxzB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cxzB/nostruct-align/1cxzB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cxzB/nostruct-align/1cxzB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cxzB/nostruct-align/1cxzB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1587/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.242432 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cy5A id: 1cy5A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cy5A/nostruct-align/1cy5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cy5A/nostruct-align/1cy5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cy5A/nostruct-align/1cy5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3972/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.876343 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cydA id: 1cydA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cydA/nostruct-align/1cydA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cydA/nostruct-align/1cydA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cydA/nostruct-align/1cydA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10775/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -26.938416 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cyi id: 1cyi alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cyi/nostruct-align/1cyi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cyi/nostruct-align/1cyi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cyi/nostruct-align/1cyi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6451/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.390381 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cyj id: 1cyj alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cyj/nostruct-align/1cyj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cyj/nostruct-align/1cyj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cyj/nostruct-align/1cyj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16031/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.647461 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cyo id: 1cyo alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cyo/nostruct-align/1cyo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cyo/nostruct-align/1cyo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cyo/nostruct-align/1cyo.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31848/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.265381 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cyx id: 1cyx alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cyx/nostruct-align/1cyx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cyx/nostruct-align/1cyx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cyx/nostruct-align/1cyx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21772/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.880493 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cz1A id: 1cz1A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cz1A/nostruct-align/1cz1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cz1A/nostruct-align/1cz1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cz1A/nostruct-align/1cz1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12171/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.018311 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cz4A id: 1cz4A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cz4A/nostruct-align/1cz4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cz4A/nostruct-align/1cz4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cz4A/nostruct-align/1cz4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23148/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.115417 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1czfA id: 1czfA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1czfA/nostruct-align/1czfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1czfA/nostruct-align/1czfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1czfA/nostruct-align/1czfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12403/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.483398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1czpA id: 1czpA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1czpA/nostruct-align/1czpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1czpA/nostruct-align/1czpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1czpA/nostruct-align/1czpA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16549/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.793396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1czqA id: 1czqA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1czqA/nostruct-align/1czqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1czqA/nostruct-align/1czqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1czqA/nostruct-align/1czqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2950/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.995361 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1czsA id: 1czsA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1czsA/nostruct-align/1czsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1czsA/nostruct-align/1czsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1czsA/nostruct-align/1czsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10593/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.713379 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1cztA id: 1cztA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cztA/nostruct-align/1cztA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cztA/nostruct-align/1cztA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cztA/nostruct-align/1cztA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7850/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.713379 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d02A id: 1d02A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d02A/nostruct-align/1d02A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d02A/nostruct-align/1d02A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d02A/nostruct-align/1d02A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7351/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.543457 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d0aB id: 1d0aB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d0aB/nostruct-align/1d0aB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d0aB/nostruct-align/1d0aB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d0aB/nostruct-align/1d0aB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6558/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.284302 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d0bA id: 1d0bA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d0bA/nostruct-align/1d0bA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d0bA/nostruct-align/1d0bA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d0bA/nostruct-align/1d0bA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27614/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.497437 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d0nA id: 1d0nA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d0nA/nostruct-align/1d0nA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d0nA/nostruct-align/1d0nA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d0nA/nostruct-align/1d0nA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7519/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.805420 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d0qA id: 1d0qA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d0qA/nostruct-align/1d0qA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d0qA/nostruct-align/1d0qA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d0qA/nostruct-align/1d0qA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27288/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.150391 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d0vA id: 1d0vA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d0vA/nostruct-align/1d0vA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d0vA/nostruct-align/1d0vA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d0vA/nostruct-align/1d0vA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30056/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.015442 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d1dA id: 1d1dA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d1dA/nostruct-align/1d1dA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d1dA/nostruct-align/1d1dA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d1dA/nostruct-align/1d1dA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30604/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.071411 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d1gA id: 1d1gA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d1gA/nostruct-align/1d1gA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d1gA/nostruct-align/1d1gA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d1gA/nostruct-align/1d1gA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20223/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.792358 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d1qA id: 1d1qA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d1qA/nostruct-align/1d1qA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d1qA/nostruct-align/1d1qA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d1qA/nostruct-align/1d1qA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21718/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.768433 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d1rA id: 1d1rA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d1rA/nostruct-align/1d1rA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d1rA/nostruct-align/1d1rA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d1rA/nostruct-align/1d1rA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14140/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.171387 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d2fA id: 1d2fA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d2fA/nostruct-align/1d2fA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d2fA/nostruct-align/1d2fA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d2fA/nostruct-align/1d2fA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13799/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.739380 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d2iA id: 1d2iA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d2iA/nostruct-align/1d2iA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d2iA/nostruct-align/1d2iA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d2iA/nostruct-align/1d2iA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10098/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.774414 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d2mA id: 1d2mA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d2mA/nostruct-align/1d2mA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d2mA/nostruct-align/1d2mA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d2mA/nostruct-align/1d2mA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32584/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.817444 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d2nA id: 1d2nA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d2nA/nostruct-align/1d2nA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d2nA/nostruct-align/1d2nA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d2nA/nostruct-align/1d2nA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16894/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.098389 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d2rB id: 1d2rB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d2rB/nostruct-align/1d2rB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d2rB/nostruct-align/1d2rB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d2rB/nostruct-align/1d2rB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19507/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.680420 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d2vA id: 1d2vA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d2vA/nostruct-align/1d2vA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d2vA/nostruct-align/1d2vA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d2vA/nostruct-align/1d2vA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25692/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.932495 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d2zA id: 1d2zA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d2zA/nostruct-align/1d2zA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d2zA/nostruct-align/1d2zA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d2zA/nostruct-align/1d2zA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10478/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.741333 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d2zB id: 1d2zB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d2zB/nostruct-align/1d2zB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d2zB/nostruct-align/1d2zB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d2zB/nostruct-align/1d2zB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3650/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.996460 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d3bA id: 1d3bA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d3bA/nostruct-align/1d3bA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d3bA/nostruct-align/1d3bA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d3bA/nostruct-align/1d3bA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24337/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.354370 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d3bB id: 1d3bB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d3bB/nostruct-align/1d3bB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d3bB/nostruct-align/1d3bB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d3bB/nostruct-align/1d3bB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20310/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.815430 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d3vA id: 1d3vA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d3vA/nostruct-align/1d3vA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d3vA/nostruct-align/1d3vA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d3vA/nostruct-align/1d3vA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18833/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.013428 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d3yA id: 1d3yA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d3yA/nostruct-align/1d3yA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d3yA/nostruct-align/1d3yA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d3yA/nostruct-align/1d3yA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14417/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.061401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d4aA id: 1d4aA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d4aA/nostruct-align/1d4aA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d4aA/nostruct-align/1d4aA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d4aA/nostruct-align/1d4aA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22445/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.030396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d4bA id: 1d4bA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d4bA/nostruct-align/1d4bA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d4bA/nostruct-align/1d4bA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d4bA/nostruct-align/1d4bA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29648/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.686401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d4oA id: 1d4oA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d4oA/nostruct-align/1d4oA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d4oA/nostruct-align/1d4oA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d4oA/nostruct-align/1d4oA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14434/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.080444 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d4qA id: 1d4qA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d4qA/nostruct-align/1d4qA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d4qA/nostruct-align/1d4qA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d4qA/nostruct-align/1d4qA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26334/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.159424 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d4tA id: 1d4tA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d4tA/nostruct-align/1d4tA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d4tA/nostruct-align/1d4tA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d4tA/nostruct-align/1d4tA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3343/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.003418 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d4vA id: 1d4vA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d4vA/nostruct-align/1d4vA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d4vA/nostruct-align/1d4vA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d4vA/nostruct-align/1d4vA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20440/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.454407 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d4vB id: 1d4vB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d4vB/nostruct-align/1d4vB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d4vB/nostruct-align/1d4vB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d4vB/nostruct-align/1d4vB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24964/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.572388 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d5nA id: 1d5nA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d5nA/nostruct-align/1d5nA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d5nA/nostruct-align/1d5nA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d5nA/nostruct-align/1d5nA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14737/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.882324 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d5rA id: 1d5rA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d5rA/nostruct-align/1d5rA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d5rA/nostruct-align/1d5rA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d5rA/nostruct-align/1d5rA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9988/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.289307 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d5yA id: 1d5yA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d5yA/nostruct-align/1d5yA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d5yA/nostruct-align/1d5yA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d5yA/nostruct-align/1d5yA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12961/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.057373 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d66A id: 1d66A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d66A/nostruct-align/1d66A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d66A/nostruct-align/1d66A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d66A/nostruct-align/1d66A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9825/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.773376 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d66A_1 id: 1d66A_1 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1d66A_1/nostruct-align/1d66A_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1d66A_1/nostruct-align/1d66A_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1d66A_1/nostruct-align/1d66A_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29596/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.996460 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d6aB id: 1d6aB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d6aB/nostruct-align/1d6aB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d6aB/nostruct-align/1d6aB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d6aB/nostruct-align/1d6aB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18205/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.347412 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d6gA id: 1d6gA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d6gA/nostruct-align/1d6gA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d6gA/nostruct-align/1d6gA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d6gA/nostruct-align/1d6gA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18934/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.238464 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d6jA id: 1d6jA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d6jA/nostruct-align/1d6jA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d6jA/nostruct-align/1d6jA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d6jA/nostruct-align/1d6jA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16407/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.031372 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d7mA id: 1d7mA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d7mA/nostruct-align/1d7mA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d7mA/nostruct-align/1d7mA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d7mA/nostruct-align/1d7mA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24193/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.806396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d7oA id: 1d7oA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d7oA/nostruct-align/1d7oA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d7oA/nostruct-align/1d7oA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d7oA/nostruct-align/1d7oA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7849/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -22.342407 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d7qA id: 1d7qA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d7qA/nostruct-align/1d7qA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d7qA/nostruct-align/1d7qA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d7qA/nostruct-align/1d7qA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16566/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.781372 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d7uA id: 1d7uA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d7uA/nostruct-align/1d7uA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d7uA/nostruct-align/1d7uA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d7uA/nostruct-align/1d7uA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7920/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.067383 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d8bA id: 1d8bA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d8bA/nostruct-align/1d8bA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d8bA/nostruct-align/1d8bA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d8bA/nostruct-align/1d8bA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18683/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.239441 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d8cA id: 1d8cA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d8cA/nostruct-align/1d8cA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d8cA/nostruct-align/1d8cA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d8cA/nostruct-align/1d8cA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20951/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.625427 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d8dB id: 1d8dB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d8dB/nostruct-align/1d8dB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d8dB/nostruct-align/1d8dB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d8dB/nostruct-align/1d8dB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17162/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.305420 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d8iA id: 1d8iA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d8iA/nostruct-align/1d8iA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d8iA/nostruct-align/1d8iA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d8iA/nostruct-align/1d8iA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31426/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.381348 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d8jA id: 1d8jA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d8jA/nostruct-align/1d8jA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d8jA/nostruct-align/1d8jA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d8jA/nostruct-align/1d8jA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-678/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.829346 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d9bA id: 1d9bA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d9bA/nostruct-align/1d9bA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d9bA/nostruct-align/1d9bA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d9bA/nostruct-align/1d9bA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28858/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.300476 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d9cA id: 1d9cA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d9cA/nostruct-align/1d9cA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d9cA/nostruct-align/1d9cA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d9cA/nostruct-align/1d9cA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20386/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.223389 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1d9eA id: 1d9eA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d9eA/nostruct-align/1d9eA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d9eA/nostruct-align/1d9eA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d9eA/nostruct-align/1d9eA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15899/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.037415 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1daaA id: 1daaA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1daaA/nostruct-align/1daaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1daaA/nostruct-align/1daaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1daaA/nostruct-align/1daaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6315/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.239380 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dabA id: 1dabA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dabA/nostruct-align/1dabA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dabA/nostruct-align/1dabA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dabA/nostruct-align/1dabA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1167/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -24.426392 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dad id: 1dad alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dad/nostruct-align/1dad.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dad/nostruct-align/1dad.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dad/nostruct-align/1dad.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25133/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.765381 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1danH id: 1danH alignment found: /projects/compbio/experiments/models.97/pdb/1d/1danH/nostruct-align/1danH.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1danH/nostruct-align/1danH.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1danH/nostruct-align/1danH.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4203/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.706421 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1danT id: 1danT alignment found: /projects/compbio/experiments/models.97/pdb/1d/1danT/nostruct-align/1danT.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1danT/nostruct-align/1danT.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1danT/nostruct-align/1danT.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14919/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.448425 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1danU id: 1danU alignment found: /projects/compbio/experiments/models.97/pdb/1d/1danU/nostruct-align/1danU.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1danU/nostruct-align/1danU.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1danU/nostruct-align/1danU.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32605/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.059387 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dapA id: 1dapA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dapA/nostruct-align/1dapA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dapA/nostruct-align/1dapA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dapA/nostruct-align/1dapA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28500/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.593384 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dar id: 1dar alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dar/nostruct-align/1dar.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dar/nostruct-align/1dar.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dar/nostruct-align/1dar.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5072/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -19.951477 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dat id: 1dat alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dat/nostruct-align/1dat.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dat/nostruct-align/1dat.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dat/nostruct-align/1dat.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19869/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.994507 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1db1A id: 1db1A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1db1A/nostruct-align/1db1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1db1A/nostruct-align/1db1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1db1A/nostruct-align/1db1A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13011/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.860474 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1db3A id: 1db3A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1db3A/nostruct-align/1db3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1db3A/nostruct-align/1db3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1db3A/nostruct-align/1db3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28295/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.485413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dbgA id: 1dbgA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dbgA/nostruct-align/1dbgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dbgA/nostruct-align/1dbgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dbgA/nostruct-align/1dbgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7413/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.733398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dbh id: 1dbh alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dbh/nostruct-align/1dbh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dbh/nostruct-align/1dbh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dbh/nostruct-align/1dbh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31790/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.307373 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dbiA id: 1dbiA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dbiA/nostruct-align/1dbiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dbiA/nostruct-align/1dbiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dbiA/nostruct-align/1dbiA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30031/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.291382 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dbs id: 1dbs alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dbs/nostruct-align/1dbs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dbs/nostruct-align/1dbs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dbs/nostruct-align/1dbs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31665/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.765381 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dbtA id: 1dbtA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dbtA/nostruct-align/1dbtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dbtA/nostruct-align/1dbtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dbtA/nostruct-align/1dbtA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30184/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.459351 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dbwA id: 1dbwA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dbwA/nostruct-align/1dbwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dbwA/nostruct-align/1dbwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dbwA/nostruct-align/1dbwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20682/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.061401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dceA id: 1dceA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dceA/nostruct-align/1dceA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dceA/nostruct-align/1dceA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dceA/nostruct-align/1dceA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2481/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.123413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dceB id: 1dceB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dceB/nostruct-align/1dceB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dceB/nostruct-align/1dceB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dceB/nostruct-align/1dceB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16766/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.203369 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dcfA id: 1dcfA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dcfA/nostruct-align/1dcfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dcfA/nostruct-align/1dcfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dcfA/nostruct-align/1dcfA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17028/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.333374 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dchA id: 1dchA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dchA/nostruct-align/1dchA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dchA/nostruct-align/1dchA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dchA/nostruct-align/1dchA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21341/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.049438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dciA id: 1dciA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dciA/nostruct-align/1dciA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dciA/nostruct-align/1dciA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dciA/nostruct-align/1dciA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4516/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.589355 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dcpA id: 1dcpA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dcpA/nostruct-align/1dcpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dcpA/nostruct-align/1dcpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dcpA/nostruct-align/1dcpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11691/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.007446 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dcqA id: 1dcqA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dcqA/nostruct-align/1dcqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dcqA/nostruct-align/1dcqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dcqA/nostruct-align/1dcqA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23920/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.598389 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dcs id: 1dcs alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dcs/nostruct-align/1dcs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dcs/nostruct-align/1dcs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dcs/nostruct-align/1dcs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6378/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.647461 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dctA id: 1dctA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dctA/nostruct-align/1dctA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dctA/nostruct-align/1dctA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dctA/nostruct-align/1dctA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31146/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.727356 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dd5A id: 1dd5A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dd5A/nostruct-align/1dd5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dd5A/nostruct-align/1dd5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dd5A/nostruct-align/1dd5A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5408/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.899414 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dd8A id: 1dd8A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dd8A/nostruct-align/1dd8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dd8A/nostruct-align/1dd8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dd8A/nostruct-align/1dd8A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13130/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.105408 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dd9A id: 1dd9A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dd9A/nostruct-align/1dd9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dd9A/nostruct-align/1dd9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dd9A/nostruct-align/1dd9A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23202/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.204346 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ddbA id: 1ddbA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1ddbA/nostruct-align/1ddbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1ddbA/nostruct-align/1ddbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1ddbA/nostruct-align/1ddbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26031/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.118469 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ddcA id: 1ddcA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1ddcA/nostruct-align/1ddcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1ddcA/nostruct-align/1ddcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1ddcA/nostruct-align/1ddcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18439/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.320374 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ddf id: 1ddf alignment found: /projects/compbio/experiments/models.97/pdb/1d/1ddf/nostruct-align/1ddf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1ddf/nostruct-align/1ddf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1ddf/nostruct-align/1ddf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9773/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.327393 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ddt id: 1ddt alignment found: /projects/compbio/experiments/models.97/pdb/1d/1ddt/nostruct-align/1ddt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1ddt/nostruct-align/1ddt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1ddt/nostruct-align/1ddt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32407/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.794373 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ddt_1 id: 1ddt_1 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1ddt_1/nostruct-align/1ddt_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1ddt_1/nostruct-align/1ddt_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1ddt_1/nostruct-align/1ddt_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21675/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.115417 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ddt_2 id: 1ddt_2 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1ddt_2/nostruct-align/1ddt_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1ddt_2/nostruct-align/1ddt_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1ddt_2/nostruct-align/1ddt_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21210/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.258423 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ddt_3 id: 1ddt_3 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1ddt_3/nostruct-align/1ddt_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1ddt_3/nostruct-align/1ddt_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1ddt_3/nostruct-align/1ddt_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3461/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.643433 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ddzA id: 1ddzA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1ddzA/nostruct-align/1ddzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1ddzA/nostruct-align/1ddzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1ddzA/nostruct-align/1ddzA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32627/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.192444 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1deaA id: 1deaA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1deaA/nostruct-align/1deaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1deaA/nostruct-align/1deaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1deaA/nostruct-align/1deaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5850/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.522400 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dec id: 1dec alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dec/nostruct-align/1dec.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dec/nostruct-align/1dec.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dec/nostruct-align/1dec.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14285/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.714478 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1def id: 1def alignment found: /projects/compbio/experiments/models.97/pdb/1d/1def/nostruct-align/1def.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1def/nostruct-align/1def.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1def/nostruct-align/1def.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6606/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.038391 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dekA id: 1dekA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dekA/nostruct-align/1dekA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dekA/nostruct-align/1dekA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dekA/nostruct-align/1dekA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30158/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -23.291443 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1delA id: 1delA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1delA/nostruct-align/1delA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1delA/nostruct-align/1delA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1delA/nostruct-align/1delA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-291/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -22.651428 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1deoA id: 1deoA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1deoA/nostruct-align/1deoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1deoA/nostruct-align/1deoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1deoA/nostruct-align/1deoA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7371/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.775452 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1derA id: 1derA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1derA/nostruct-align/1derA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1derA/nostruct-align/1derA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1derA/nostruct-align/1derA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14477/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.866394 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1devB id: 1devB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1devB/nostruct-align/1devB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1devB/nostruct-align/1devB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1devB/nostruct-align/1devB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17995/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.928406 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1devC id: 1devC alignment found: /projects/compbio/experiments/models.97/pdb/1d/1devC/nostruct-align/1devC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1devC/nostruct-align/1devC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1devC/nostruct-align/1devC.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13833/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.314392 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1df4A id: 1df4A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1df4A/nostruct-align/1df4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1df4A/nostruct-align/1df4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1df4A/nostruct-align/1df4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14840/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.440430 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1df7A id: 1df7A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1df7A/nostruct-align/1df7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1df7A/nostruct-align/1df7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1df7A/nostruct-align/1df7A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13614/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.759521 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dfd id: 1dfd alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dfd/nostruct-align/1dfd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dfd/nostruct-align/1dfd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dfd/nostruct-align/1dfd.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-29352/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.025330 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dfeA id: 1dfeA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dfeA/nostruct-align/1dfeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dfeA/nostruct-align/1dfeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dfeA/nostruct-align/1dfeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23569/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.649414 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dfmA id: 1dfmA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dfmA/nostruct-align/1dfmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dfmA/nostruct-align/1dfmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dfmA/nostruct-align/1dfmA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24697/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.774414 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dfnA id: 1dfnA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dfnA/nostruct-align/1dfnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dfnA/nostruct-align/1dfnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dfnA/nostruct-align/1dfnA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28265/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.616333 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dfsA id: 1dfsA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dfsA/nostruct-align/1dfsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dfsA/nostruct-align/1dfsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dfsA/nostruct-align/1dfsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7227/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.407471 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dfuP id: 1dfuP alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dfuP/nostruct-align/1dfuP.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dfuP/nostruct-align/1dfuP.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dfuP/nostruct-align/1dfuP.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8077/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.759338 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dfx id: 1dfx alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dfx/nostruct-align/1dfx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dfx/nostruct-align/1dfx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dfx/nostruct-align/1dfx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32331/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.899353 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dg3A id: 1dg3A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dg3A/nostruct-align/1dg3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dg3A/nostruct-align/1dg3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dg3A/nostruct-align/1dg3A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4796/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.761353 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dg6A id: 1dg6A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dg6A/nostruct-align/1dg6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dg6A/nostruct-align/1dg6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dg6A/nostruct-align/1dg6A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8216/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.675415 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dg9A id: 1dg9A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dg9A/nostruct-align/1dg9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dg9A/nostruct-align/1dg9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dg9A/nostruct-align/1dg9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28826/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.594482 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dgfA id: 1dgfA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgfA/nostruct-align/1dgfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgfA/nostruct-align/1dgfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dgfA/nostruct-align/1dgfA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12373/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.658447 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dgkN id: 1dgkN alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgkN/nostruct-align/1dgkN.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgkN/nostruct-align/1dgkN.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dgkN/nostruct-align/1dgkN.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27029/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.617432 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dgrC id: 1dgrC alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgrC/nostruct-align/1dgrC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgrC/nostruct-align/1dgrC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dgrC/nostruct-align/1dgrC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3589/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.108398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dgrM id: 1dgrM alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgrM/nostruct-align/1dgrM.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgrM/nostruct-align/1dgrM.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dgrM/nostruct-align/1dgrM.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9098/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.024414 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dgrN id: 1dgrN alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgrN/nostruct-align/1dgrN.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgrN/nostruct-align/1dgrN.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dgrN/nostruct-align/1dgrN.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27184/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.336426 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dgrV id: 1dgrV alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgrV/nostruct-align/1dgrV.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgrV/nostruct-align/1dgrV.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dgrV/nostruct-align/1dgrV.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file ./tmp/tmp-build-weighted-model-purr-4993/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.339417 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dgrW id: 1dgrW alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgrW/nostruct-align/1dgrW.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgrW/nostruct-align/1dgrW.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dgrW/nostruct-align/1dgrW.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9224/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.967407 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dguA id: 1dguA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dguA/nostruct-align/1dguA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dguA/nostruct-align/1dguA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dguA/nostruct-align/1dguA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5774/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.542358 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dgwA id: 1dgwA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgwA/nostruct-align/1dgwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgwA/nostruct-align/1dgwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dgwA/nostruct-align/1dgwA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-927/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.335327 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dgwX id: 1dgwX alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgwX/nostruct-align/1dgwX.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgwX/nostruct-align/1dgwX.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dgwX/nostruct-align/1dgwX.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9218/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.336426 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dgwY id: 1dgwY alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgwY/nostruct-align/1dgwY.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgwY/nostruct-align/1dgwY.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dgwY/nostruct-align/1dgwY.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30131/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.024414 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dgyA id: 1dgyA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgyA/nostruct-align/1dgyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgyA/nostruct-align/1dgyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dgyA/nostruct-align/1dgyA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6285/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.521362 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dhkB id: 1dhkB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dhkB/nostruct-align/1dhkB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dhkB/nostruct-align/1dhkB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dhkB/nostruct-align/1dhkB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20340/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.617310 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dhn id: 1dhn alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dhn/nostruct-align/1dhn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dhn/nostruct-align/1dhn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dhn/nostruct-align/1dhn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25875/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.413452 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dhpA id: 1dhpA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dhpA/nostruct-align/1dhpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dhpA/nostruct-align/1dhpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dhpA/nostruct-align/1dhpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29187/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.995483 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dhr id: 1dhr alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dhr/nostruct-align/1dhr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dhr/nostruct-align/1dhr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dhr/nostruct-align/1dhr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3644/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -19.820435 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dhs id: 1dhs alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dhs/nostruct-align/1dhs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dhs/nostruct-align/1dhs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dhs/nostruct-align/1dhs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23012/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.453430 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dhx id: 1dhx alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dhx/nostruct-align/1dhx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dhx/nostruct-align/1dhx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dhx/nostruct-align/1dhx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2758/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.716431 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dhy id: 1dhy alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dhy/nostruct-align/1dhy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dhy/nostruct-align/1dhy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dhy/nostruct-align/1dhy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23882/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.140381 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1di0A id: 1di0A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1di0A/nostruct-align/1di0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1di0A/nostruct-align/1di0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1di0A/nostruct-align/1di0A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22360/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.038330 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1di2A id: 1di2A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1di2A/nostruct-align/1di2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1di2A/nostruct-align/1di2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1di2A/nostruct-align/1di2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5821/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.048462 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1di6A id: 1di6A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1di6A/nostruct-align/1di6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1di6A/nostruct-align/1di6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1di6A/nostruct-align/1di6A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12756/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.311340 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1difA id: 1difA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1difA/nostruct-align/1difA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1difA/nostruct-align/1difA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1difA/nostruct-align/1difA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10541/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.293457 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dih id: 1dih alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dih/nostruct-align/1dih.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dih/nostruct-align/1dih.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dih/nostruct-align/1dih.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13194/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.872375 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dih_1 id: 1dih_1 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dih_1/nostruct-align/1dih_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dih_1/nostruct-align/1dih_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dih_1/nostruct-align/1dih_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31553/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.765442 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dih_2 id: 1dih_2 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dih_2/nostruct-align/1dih_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dih_2/nostruct-align/1dih_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dih_2/nostruct-align/1dih_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13952/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.888367 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1diiC id: 1diiC alignment found: /projects/compbio/experiments/models.97/pdb/1d/1diiC/nostruct-align/1diiC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1diiC/nostruct-align/1diiC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1diiC/nostruct-align/1diiC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5104/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.028442 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dik id: 1dik alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dik/nostruct-align/1dik.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dik/nostruct-align/1dik.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dik/nostruct-align/1dik.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11021/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.635437 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dik_1 id: 1dik_1 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dik_1/nostruct-align/1dik_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dik_1/nostruct-align/1dik_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dik_1/nostruct-align/1dik_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13868/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.946411 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dik_2 id: 1dik_2 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dik_2/nostruct-align/1dik_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dik_2/nostruct-align/1dik_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dik_2/nostruct-align/1dik_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28373/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.221436 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dik_3 id: 1dik_3 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dik_3/nostruct-align/1dik_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dik_3/nostruct-align/1dik_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dik_3/nostruct-align/1dik_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28627/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.897400 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1din id: 1din alignment found: /projects/compbio/experiments/models.97/pdb/1d/1din/nostruct-align/1din.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1din/nostruct-align/1din.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1din/nostruct-align/1din.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-151/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.836426 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dioA id: 1dioA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dioA/nostruct-align/1dioA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dioA/nostruct-align/1dioA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dioA/nostruct-align/1dioA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8306/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.485413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dioB id: 1dioB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dioB/nostruct-align/1dioB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dioB/nostruct-align/1dioB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dioB/nostruct-align/1dioB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3422/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.268433 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dioG id: 1dioG alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dioG/nostruct-align/1dioG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dioG/nostruct-align/1dioG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dioG/nostruct-align/1dioG.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3545/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.303406 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dipA id: 1dipA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dipA/nostruct-align/1dipA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dipA/nostruct-align/1dipA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dipA/nostruct-align/1dipA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23100/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.121338 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dipB id: 1dipB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dipB/nostruct-align/1dipB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dipB/nostruct-align/1dipB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dipB/nostruct-align/1dipB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27942/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.121338 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1div id: 1div alignment found: /projects/compbio/experiments/models.97/pdb/1d/1div/nostruct-align/1div.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1div/nostruct-align/1div.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1div/nostruct-align/1div.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23503/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.498413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dj0A id: 1dj0A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dj0A/nostruct-align/1dj0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dj0A/nostruct-align/1dj0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dj0A/nostruct-align/1dj0A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23939/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.905334 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dj7A id: 1dj7A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dj7A/nostruct-align/1dj7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dj7A/nostruct-align/1dj7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dj7A/nostruct-align/1dj7A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26150/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.998352 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dj7B id: 1dj7B alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dj7B/nostruct-align/1dj7B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dj7B/nostruct-align/1dj7B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dj7B/nostruct-align/1dj7B.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16854/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.098450 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1djxB id: 1djxB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1djxB/nostruct-align/1djxB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1djxB/nostruct-align/1djxB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1djxB/nostruct-align/1djxB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8596/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.800415 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dkgA id: 1dkgA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dkgA/nostruct-align/1dkgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dkgA/nostruct-align/1dkgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dkgA/nostruct-align/1dkgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17755/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.173462 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dkgB id: 1dkgB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dkgB/nostruct-align/1dkgB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dkgB/nostruct-align/1dkgB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dkgB/nostruct-align/1dkgB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24867/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.283325 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dkgD id: 1dkgD alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dkgD/nostruct-align/1dkgD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dkgD/nostruct-align/1dkgD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dkgD/nostruct-align/1dkgD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8383/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.239380 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dkiA id: 1dkiA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dkiA/nostruct-align/1dkiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dkiA/nostruct-align/1dkiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dkiA/nostruct-align/1dkiA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7599/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.357422 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dkrA id: 1dkrA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dkrA/nostruct-align/1dkrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dkrA/nostruct-align/1dkrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dkrA/nostruct-align/1dkrA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5396/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.821350 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dktB id: 1dktB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dktB/nostruct-align/1dktB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dktB/nostruct-align/1dktB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dktB/nostruct-align/1dktB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2897/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.862427 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dkuA id: 1dkuA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dkuA/nostruct-align/1dkuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dkuA/nostruct-align/1dkuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dkuA/nostruct-align/1dkuA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16256/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.351379 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dkvA id: 1dkvA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dkvA/nostruct-align/1dkvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dkvA/nostruct-align/1dkvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dkvA/nostruct-align/1dkvA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22626/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.053345 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dkzA id: 1dkzA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dkzA/nostruct-align/1dkzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dkzA/nostruct-align/1dkzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dkzA/nostruct-align/1dkzA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21094/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.756470 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dl2A id: 1dl2A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dl2A/nostruct-align/1dl2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dl2A/nostruct-align/1dl2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dl2A/nostruct-align/1dl2A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20693/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.377441 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dlc id: 1dlc alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dlc/nostruct-align/1dlc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dlc/nostruct-align/1dlc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dlc/nostruct-align/1dlc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30152/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.738403 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dlc_1 id: 1dlc_1 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dlc_1/nostruct-align/1dlc_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dlc_1/nostruct-align/1dlc_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dlc_1/nostruct-align/1dlc_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16910/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.820435 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dlc_2 id: 1dlc_2 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dlc_2/nostruct-align/1dlc_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dlc_2/nostruct-align/1dlc_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dlc_2/nostruct-align/1dlc_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2587/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.635376 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dlc_3 id: 1dlc_3 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dlc_3/nostruct-align/1dlc_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dlc_3/nostruct-align/1dlc_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dlc_3/nostruct-align/1dlc_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30357/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.526367 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dlfH id: 1dlfH alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dlfH/nostruct-align/1dlfH.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dlfH/nostruct-align/1dlfH.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dlfH/nostruct-align/1dlfH.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3528/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.067383 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dlfL id: 1dlfL alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dlfL/nostruct-align/1dlfL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dlfL/nostruct-align/1dlfL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dlfL/nostruct-align/1dlfL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21064/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.255493 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dlhA_1 id: 1dlhA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dlhA_1/nostruct-align/1dlhA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dlhA_1/nostruct-align/1dlhA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dlhA_1/nostruct-align/1dlhA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19071/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.925415 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dlhB id: 1dlhB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dlhB/nostruct-align/1dlhB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dlhB/nostruct-align/1dlhB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dlhB/nostruct-align/1dlhB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32313/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.346436 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dliA id: 1dliA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dliA/nostruct-align/1dliA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dliA/nostruct-align/1dliA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dliA/nostruct-align/1dliA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32762/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.443359 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dlxA id: 1dlxA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dlxA/nostruct-align/1dlxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dlxA/nostruct-align/1dlxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dlxA/nostruct-align/1dlxA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20531/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.590454 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dm0A id: 1dm0A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dm0A/nostruct-align/1dm0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dm0A/nostruct-align/1dm0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dm0A/nostruct-align/1dm0A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26397/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.024414 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dm9A id: 1dm9A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dm9A/nostruct-align/1dm9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dm9A/nostruct-align/1dm9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dm9A/nostruct-align/1dm9A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26716/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.550415 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dmaA id: 1dmaA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dmaA/nostruct-align/1dmaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dmaA/nostruct-align/1dmaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dmaA/nostruct-align/1dmaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13945/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.695435 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dmc id: 1dmc alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dmc/nostruct-align/1dmc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dmc/nostruct-align/1dmc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dmc/nostruct-align/1dmc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32496/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.662476 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dme id: 1dme alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dme/nostruct-align/1dme.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dme/nostruct-align/1dme.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dme/nostruct-align/1dme.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17079/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.481445 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dmhA id: 1dmhA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dmhA/nostruct-align/1dmhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dmhA/nostruct-align/1dmhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dmhA/nostruct-align/1dmhA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18295/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.464355 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dmlA id: 1dmlA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dmlA/nostruct-align/1dmlA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dmlA/nostruct-align/1dmlA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dmlA/nostruct-align/1dmlA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12130/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.264404 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dmlB id: 1dmlB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dmlB/nostruct-align/1dmlB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dmlB/nostruct-align/1dmlB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dmlB/nostruct-align/1dmlB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8270/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.797363 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dmr id: 1dmr alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dmr/nostruct-align/1dmr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dmr/nostruct-align/1dmr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dmr/nostruct-align/1dmr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6225/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.982361 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dmuA id: 1dmuA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dmuA/nostruct-align/1dmuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dmuA/nostruct-align/1dmuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dmuA/nostruct-align/1dmuA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29066/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.101440 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dmwA id: 1dmwA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dmwA/nostruct-align/1dmwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dmwA/nostruct-align/1dmwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dmwA/nostruct-align/1dmwA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18939/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.870422 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dn1A id: 1dn1A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dn1A/nostruct-align/1dn1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dn1A/nostruct-align/1dn1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dn1A/nostruct-align/1dn1A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19438/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.560303 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dn1B id: 1dn1B alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dn1B/nostruct-align/1dn1B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dn1B/nostruct-align/1dn1B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dn1B/nostruct-align/1dn1B.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29566/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.887329 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dnv id: 1dnv alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dnv/nostruct-align/1dnv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dnv/nostruct-align/1dnv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dnv/nostruct-align/1dnv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20658/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.548462 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dnyA id: 1dnyA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dnyA/nostruct-align/1dnyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dnyA/nostruct-align/1dnyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dnyA/nostruct-align/1dnyA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22835/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.552368 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1do0A id: 1do0A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1do0A/nostruct-align/1do0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1do0A/nostruct-align/1do0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1do0A/nostruct-align/1do0A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17502/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.026367 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1do6A id: 1do6A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1do6A/nostruct-align/1do6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1do6A/nostruct-align/1do6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1do6A/nostruct-align/1do6A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15626/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.707397 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1doi id: 1doi alignment found: /projects/compbio/experiments/models.97/pdb/1d/1doi/nostruct-align/1doi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1doi/nostruct-align/1doi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1doi/nostruct-align/1doi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2816/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.698425 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dokA id: 1dokA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dokA/nostruct-align/1dokA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dokA/nostruct-align/1dokA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dokA/nostruct-align/1dokA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27750/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.663391 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dosA id: 1dosA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dosA/nostruct-align/1dosA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dosA/nostruct-align/1dosA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dosA/nostruct-align/1dosA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9823/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.384338 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dozA id: 1dozA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dozA/nostruct-align/1dozA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dozA/nostruct-align/1dozA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dozA/nostruct-align/1dozA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30594/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.315430 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dp5B id: 1dp5B alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dp5B/nostruct-align/1dp5B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dp5B/nostruct-align/1dp5B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dp5B/nostruct-align/1dp5B.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6741/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.100342 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dp7P id: 1dp7P alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dp7P/nostruct-align/1dp7P.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dp7P/nostruct-align/1dp7P.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dp7P/nostruct-align/1dp7P.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3168/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.195374 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dpe id: 1dpe alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dpe/nostruct-align/1dpe.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dpe/nostruct-align/1dpe.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dpe/nostruct-align/1dpe.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6849/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.168457 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dpgA id: 1dpgA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dpgA/nostruct-align/1dpgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dpgA/nostruct-align/1dpgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dpgA/nostruct-align/1dpgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4398/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.391418 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dpgA_1 id: 1dpgA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dpgA_1/nostruct-align/1dpgA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dpgA_1/nostruct-align/1dpgA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dpgA_1/nostruct-align/1dpgA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6848/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.582397 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dpgA_2 id: 1dpgA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dpgA_2/nostruct-align/1dpgA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dpgA_2/nostruct-align/1dpgA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dpgA_2/nostruct-align/1dpgA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13146/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.966431 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dpo id: 1dpo alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dpo/nostruct-align/1dpo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dpo/nostruct-align/1dpo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dpo/nostruct-align/1dpo.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1716/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.172485 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dppA id: 1dppA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dppA/nostruct-align/1dppA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dppA/nostruct-align/1dppA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dppA/nostruct-align/1dppA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18299/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.896362 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dprA_1 id: 1dprA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dprA_1/nostruct-align/1dprA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dprA_1/nostruct-align/1dprA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dprA_1/nostruct-align/1dprA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14428/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.668457 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dpr_1a1 id: 1dpr_1a1 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dpr_1a1/nostruct-align/1dpr_1a1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dpr_1a1/nostruct-align/1dpr_1a1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dpr_1a1/nostruct-align/1dpr_1a1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29712/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.986328 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dpsA id: 1dpsA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dpsA/nostruct-align/1dpsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dpsA/nostruct-align/1dpsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dpsA/nostruct-align/1dpsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25291/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.455444 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dpsD id: 1dpsD alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dpsD/nostruct-align/1dpsD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dpsD/nostruct-align/1dpsD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dpsD/nostruct-align/1dpsD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4161/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.393311 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dptA id: 1dptA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dptA/nostruct-align/1dptA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dptA/nostruct-align/1dptA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dptA/nostruct-align/1dptA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12175/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.097412 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dqaA id: 1dqaA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dqaA/nostruct-align/1dqaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dqaA/nostruct-align/1dqaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dqaA/nostruct-align/1dqaA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27997/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.773376 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dqbA id: 1dqbA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dqbA/nostruct-align/1dqbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dqbA/nostruct-align/1dqbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dqbA/nostruct-align/1dqbA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29283/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.735352 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dqgA id: 1dqgA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dqgA/nostruct-align/1dqgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dqgA/nostruct-align/1dqgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dqgA/nostruct-align/1dqgA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3641/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.666382 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dqrA id: 1dqrA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dqrA/nostruct-align/1dqrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dqrA/nostruct-align/1dqrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dqrA/nostruct-align/1dqrA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29334/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.380432 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dqsA id: 1dqsA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dqsA/nostruct-align/1dqsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dqsA/nostruct-align/1dqsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dqsA/nostruct-align/1dqsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10767/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.627441 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dquA id: 1dquA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dquA/nostruct-align/1dquA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dquA/nostruct-align/1dquA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dquA/nostruct-align/1dquA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5178/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.816406 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dqwA id: 1dqwA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dqwA/nostruct-align/1dqwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dqwA/nostruct-align/1dqwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dqwA/nostruct-align/1dqwA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12367/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.703430 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dr8B id: 1dr8B alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dr8B/nostruct-align/1dr8B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dr8B/nostruct-align/1dr8B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dr8B/nostruct-align/1dr8B.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5863/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.149475 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1draA id: 1draA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1draA/nostruct-align/1draA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1draA/nostruct-align/1draA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1draA/nostruct-align/1draA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20136/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.498413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1drmA id: 1drmA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1drmA/nostruct-align/1drmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1drmA/nostruct-align/1drmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1drmA/nostruct-align/1drmA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7374/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.118408 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1drqA id: 1drqA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1drqA/nostruct-align/1drqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1drqA/nostruct-align/1drqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1drqA/nostruct-align/1drqA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13314/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.499390 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1drw id: 1drw alignment found: /projects/compbio/experiments/models.97/pdb/1d/1drw/nostruct-align/1drw.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1drw/nostruct-align/1drw.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1drw/nostruct-align/1drw.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8323/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.436401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dsbA id: 1dsbA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dsbA/nostruct-align/1dsbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dsbA/nostruct-align/1dsbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dsbA/nostruct-align/1dsbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26379/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.039429 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dsbA_1 id: 1dsbA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dsbA_1/nostruct-align/1dsbA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dsbA_1/nostruct-align/1dsbA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dsbA_1/nostruct-align/1dsbA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32085/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.217346 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dsbA_2 id: 1dsbA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dsbA_2/nostruct-align/1dsbA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dsbA_2/nostruct-align/1dsbA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dsbA_2/nostruct-align/1dsbA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2611/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.988403 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dssG id: 1dssG alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dssG/nostruct-align/1dssG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dssG/nostruct-align/1dssG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dssG/nostruct-align/1dssG.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20153/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.604431 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dsvA id: 1dsvA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dsvA/nostruct-align/1dsvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dsvA/nostruct-align/1dsvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dsvA/nostruct-align/1dsvA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5027/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.861450 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dt4A id: 1dt4A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dt4A/nostruct-align/1dt4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dt4A/nostruct-align/1dt4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dt4A/nostruct-align/1dt4A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14922/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.371338 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dt8A id: 1dt8A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dt8A/nostruct-align/1dt8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dt8A/nostruct-align/1dt8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dt8A/nostruct-align/1dt8A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2994/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.259399 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dt9A id: 1dt9A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dt9A/nostruct-align/1dt9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dt9A/nostruct-align/1dt9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dt9A/nostruct-align/1dt9A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32361/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.969360 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dtgA id: 1dtgA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dtgA/nostruct-align/1dtgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dtgA/nostruct-align/1dtgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dtgA/nostruct-align/1dtgA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-833/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.972412 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dtoA id: 1dtoA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dtoA/nostruct-align/1dtoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dtoA/nostruct-align/1dtoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dtoA/nostruct-align/1dtoA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13562/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.587341 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dts id: 1dts alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dts/nostruct-align/1dts.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dts/nostruct-align/1dts.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dts/nostruct-align/1dts.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21739/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.701416 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dttA id: 1dttA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dttA/nostruct-align/1dttA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dttA/nostruct-align/1dttA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dttA/nostruct-align/1dttA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25638/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.871338 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dtx id: 1dtx alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dtx/nostruct-align/1dtx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dtx/nostruct-align/1dtx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dtx/nostruct-align/1dtx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21184/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.959473 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dtyA id: 1dtyA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dtyA/nostruct-align/1dtyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dtyA/nostruct-align/1dtyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dtyA/nostruct-align/1dtyA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.565369 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1du2A id: 1du2A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1du2A/nostruct-align/1du2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1du2A/nostruct-align/1du2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1du2A/nostruct-align/1du2A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3416/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.691467 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dugA id: 1dugA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dugA/nostruct-align/1dugA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dugA/nostruct-align/1dugA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dugA/nostruct-align/1dugA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10386/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.109375 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dujA id: 1dujA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dujA/nostruct-align/1dujA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dujA/nostruct-align/1dujA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dujA/nostruct-align/1dujA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3911/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.134399 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dulA id: 1dulA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dulA/nostruct-align/1dulA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dulA/nostruct-align/1dulA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dulA/nostruct-align/1dulA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18697/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.816406 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dun id: 1dun alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dun/nostruct-align/1dun.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dun/nostruct-align/1dun.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dun/nostruct-align/1dun.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32370/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.266479 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dupA id: 1dupA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dupA/nostruct-align/1dupA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dupA/nostruct-align/1dupA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dupA/nostruct-align/1dupA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31315/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.523438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1duzA id: 1duzA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1duzA/nostruct-align/1duzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1duzA/nostruct-align/1duzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1duzA/nostruct-align/1duzA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6018/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.743408 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1duzB id: 1duzB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1duzB/nostruct-align/1duzB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1duzB/nostruct-align/1duzB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1duzB/nostruct-align/1duzB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16310/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.542358 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dv0A id: 1dv0A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dv0A/nostruct-align/1dv0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dv0A/nostruct-align/1dv0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dv0A/nostruct-align/1dv0A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1564/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.094360 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dvh id: 1dvh alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dvh/nostruct-align/1dvh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dvh/nostruct-align/1dvh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dvh/nostruct-align/1dvh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17182/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.183472 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dvjA id: 1dvjA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dvjA/nostruct-align/1dvjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dvjA/nostruct-align/1dvjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dvjA/nostruct-align/1dvjA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30534/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.998413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dvkA id: 1dvkA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dvkA/nostruct-align/1dvkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dvkA/nostruct-align/1dvkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dvkA/nostruct-align/1dvkA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19900/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.327393 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dvpA id: 1dvpA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dvpA/nostruct-align/1dvpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dvpA/nostruct-align/1dvpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dvpA/nostruct-align/1dvpA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6970/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.845459 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dw9A id: 1dw9A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dw9A/nostruct-align/1dw9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dw9A/nostruct-align/1dw9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dw9A/nostruct-align/1dw9A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18535/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.542358 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dwnA id: 1dwnA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dwnA/nostruct-align/1dwnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dwnA/nostruct-align/1dwnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dwnA/nostruct-align/1dwnA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3571/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.501404 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dwtA id: 1dwtA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dwtA/nostruct-align/1dwtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dwtA/nostruct-align/1dwtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dwtA/nostruct-align/1dwtA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9383/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.753418 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dx5I id: 1dx5I alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dx5I/nostruct-align/1dx5I.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dx5I/nostruct-align/1dx5I.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dx5I/nostruct-align/1dx5I.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3638/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.839355 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dx7A id: 1dx7A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dx7A/nostruct-align/1dx7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dx7A/nostruct-align/1dx7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dx7A/nostruct-align/1dx7A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6023/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.693481 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dxgA id: 1dxgA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dxgA/nostruct-align/1dxgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dxgA/nostruct-align/1dxgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dxgA/nostruct-align/1dxgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20488/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.708435 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dxtB id: 1dxtB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dxtB/nostruct-align/1dxtB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dxtB/nostruct-align/1dxtB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dxtB/nostruct-align/1dxtB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4649/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.636475 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dxy id: 1dxy alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dxy/nostruct-align/1dxy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dxy/nostruct-align/1dxy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dxy/nostruct-align/1dxy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13636/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -39.750366 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dxzA id: 1dxzA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dxzA/nostruct-align/1dxzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dxzA/nostruct-align/1dxzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dxzA/nostruct-align/1dxzA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3643/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.435425 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dy5A id: 1dy5A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dy5A/nostruct-align/1dy5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dy5A/nostruct-align/1dy5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dy5A/nostruct-align/1dy5A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3403/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.705444 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dynA id: 1dynA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dynA/nostruct-align/1dynA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dynA/nostruct-align/1dynA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dynA/nostruct-align/1dynA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8602/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.881348 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dyr id: 1dyr alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dyr/nostruct-align/1dyr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dyr/nostruct-align/1dyr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dyr/nostruct-align/1dyr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32226/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.492432 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dz1A id: 1dz1A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dz1A/nostruct-align/1dz1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dz1A/nostruct-align/1dz1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dz1A/nostruct-align/1dz1A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22611/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.789429 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dz3A id: 1dz3A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dz3A/nostruct-align/1dz3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dz3A/nostruct-align/1dz3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dz3A/nostruct-align/1dz3A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7227/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.422363 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dzlA id: 1dzlA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dzlA/nostruct-align/1dzlA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dzlA/nostruct-align/1dzlA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dzlA/nostruct-align/1dzlA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21221/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.951416 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1dzrA id: 1dzrA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dzrA/nostruct-align/1dzrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dzrA/nostruct-align/1dzrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dzrA/nostruct-align/1dzrA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20420/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.072388 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1e0aB id: 1e0aB alignment found: /projects/compbio/experiments/models.97/pdb/1e/1e0aB/nostruct-align/1e0aB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1e0aB/nostruct-align/1e0aB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1e0aB/nostruct-align/1e0aB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1361/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.895386 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1e0bA id: 1e0bA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1e0bA/nostruct-align/1e0bA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1e0bA/nostruct-align/1e0bA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1e0bA/nostruct-align/1e0bA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19278/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.923401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1e0cA id: 1e0cA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1e0cA/nostruct-align/1e0cA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1e0cA/nostruct-align/1e0cA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1e0cA/nostruct-align/1e0cA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25124/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.523438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1e0lA id: 1e0lA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1e0lA/nostruct-align/1e0lA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1e0lA/nostruct-align/1e0lA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1e0lA/nostruct-align/1e0lA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18044/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.012329 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1e1bA id: 1e1bA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1e1bA/nostruct-align/1e1bA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1e1bA/nostruct-align/1e1bA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1e1bA/nostruct-align/1e1bA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15627/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.809448 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1e2aA id: 1e2aA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1e2aA/nostruct-align/1e2aA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1e2aA/nostruct-align/1e2aA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1e2aA/nostruct-align/1e2aA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29239/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.258362 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1e2o id: 1e2o alignment found: /projects/compbio/experiments/models.97/pdb/1e/1e2o/nostruct-align/1e2o.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1e2o/nostruct-align/1e2o.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1e2o/nostruct-align/1e2o.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14567/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.781372 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1eaf id: 1eaf alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eaf/nostruct-align/1eaf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eaf/nostruct-align/1eaf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eaf/nostruct-align/1eaf.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28150/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.122437 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1eagA id: 1eagA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eagA/nostruct-align/1eagA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eagA/nostruct-align/1eagA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eagA/nostruct-align/1eagA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17142/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.202393 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1eaiC id: 1eaiC alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eaiC/nostruct-align/1eaiC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eaiC/nostruct-align/1eaiC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eaiC/nostruct-align/1eaiC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27206/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.236328 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1eal id: 1eal alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eal/nostruct-align/1eal.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eal/nostruct-align/1eal.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eal/nostruct-align/1eal.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23015/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.064331 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1eayC id: 1eayC alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eayC/nostruct-align/1eayC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eayC/nostruct-align/1eayC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eayC/nostruct-align/1eayC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5412/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.605408 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ebdC id: 1ebdC alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ebdC/nostruct-align/1ebdC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ebdC/nostruct-align/1ebdC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ebdC/nostruct-align/1ebdC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19367/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.924438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ebhA_1 id: 1ebhA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1e/1ebhA_1/nostruct-align/1ebhA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1ebhA_1/nostruct-align/1ebhA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1e/1ebhA_1/nostruct-align/1ebhA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1506/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.973450 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ebhA_2 id: 1ebhA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1e/1ebhA_2/nostruct-align/1ebhA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1ebhA_2/nostruct-align/1ebhA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1e/1ebhA_2/nostruct-align/1ebhA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23359/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.760315 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1eblA id: 1eblA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eblA/nostruct-align/1eblA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eblA/nostruct-align/1eblA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eblA/nostruct-align/1eblA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16462/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.944458 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ebmA id: 1ebmA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ebmA/nostruct-align/1ebmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ebmA/nostruct-align/1ebmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ebmA/nostruct-align/1ebmA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27874/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.157349 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ebpA id: 1ebpA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ebpA/nostruct-align/1ebpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ebpA/nostruct-align/1ebpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ebpA/nostruct-align/1ebpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12763/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.244385 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ebuA id: 1ebuA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ebuA/nostruct-align/1ebuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ebuA/nostruct-align/1ebuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ebuA/nostruct-align/1ebuA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8057/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.263367 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1eca id: 1eca alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eca/nostruct-align/1eca.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eca/nostruct-align/1eca.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eca/nostruct-align/1eca.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23933/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.303345 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ecd id: 1ecd alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ecd/nostruct-align/1ecd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ecd/nostruct-align/1ecd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ecd/nostruct-align/1ecd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20542/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.219360 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1eceA id: 1eceA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eceA/nostruct-align/1eceA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eceA/nostruct-align/1eceA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eceA/nostruct-align/1eceA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9969/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.597412 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ecfA id: 1ecfA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ecfA/nostruct-align/1ecfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ecfA/nostruct-align/1ecfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ecfA/nostruct-align/1ecfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31454/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.601440 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ecfB id: 1ecfB alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ecfB/nostruct-align/1ecfB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ecfB/nostruct-align/1ecfB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ecfB/nostruct-align/1ecfB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5047/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.239380 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1eciA id: 1eciA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eciA/nostruct-align/1eciA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eciA/nostruct-align/1eciA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eciA/nostruct-align/1eciA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4438/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.068420 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ecl id: 1ecl alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ecl/nostruct-align/1ecl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ecl/nostruct-align/1ecl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ecl/nostruct-align/1ecl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15537/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.701416 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ecmA id: 1ecmA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ecmA/nostruct-align/1ecmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ecmA/nostruct-align/1ecmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ecmA/nostruct-align/1ecmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24209/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.631348 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1eco id: 1eco alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eco/nostruct-align/1eco.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eco/nostruct-align/1eco.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eco/nostruct-align/1eco.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7670/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.807373 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ecpA id: 1ecpA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ecpA/nostruct-align/1ecpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ecpA/nostruct-align/1ecpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ecpA/nostruct-align/1ecpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29599/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.755371 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ecrA id: 1ecrA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ecrA/nostruct-align/1ecrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ecrA/nostruct-align/1ecrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ecrA/nostruct-align/1ecrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28452/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.028381 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ecxA id: 1ecxA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ecxA/nostruct-align/1ecxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ecxA/nostruct-align/1ecxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ecxA/nostruct-align/1ecxA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2676/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.727417 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ed7A id: 1ed7A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ed7A/nostruct-align/1ed7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ed7A/nostruct-align/1ed7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ed7A/nostruct-align/1ed7A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8322/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.196411 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ede id: 1ede alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ede/nostruct-align/1ede.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ede/nostruct-align/1ede.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ede/nostruct-align/1ede.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28414/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.280396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1edg id: 1edg alignment found: /projects/compbio/experiments/models.97/pdb/1e/1edg/nostruct-align/1edg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1edg/nostruct-align/1edg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1edg/nostruct-align/1edg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23454/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.916382 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1edhA id: 1edhA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1edhA/nostruct-align/1edhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1edhA/nostruct-align/1edhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1edhA/nostruct-align/1edhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9346/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.507446 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1edmB id: 1edmB alignment found: /projects/compbio/experiments/models.97/pdb/1e/1edmB/nostruct-align/1edmB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1edmB/nostruct-align/1edmB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1edmB/nostruct-align/1edmB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25029/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.253418 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1edqA id: 1edqA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1edqA/nostruct-align/1edqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1edqA/nostruct-align/1edqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1edqA/nostruct-align/1edqA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26159/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.939453 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1edt id: 1edt alignment found: /projects/compbio/experiments/models.97/pdb/1e/1edt/nostruct-align/1edt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1edt/nostruct-align/1edt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1edt/nostruct-align/1edt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12210/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.182373 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1eduA id: 1eduA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eduA/nostruct-align/1eduA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eduA/nostruct-align/1eduA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eduA/nostruct-align/1eduA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7849/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.086426 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ee4A id: 1ee4A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ee4A/nostruct-align/1ee4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ee4A/nostruct-align/1ee4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ee4A/nostruct-align/1ee4A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25739/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.679321 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1eerA id: 1eerA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eerA/nostruct-align/1eerA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eerA/nostruct-align/1eerA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eerA/nostruct-align/1eerA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17281/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.057434 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1eerB id: 1eerB alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eerB/nostruct-align/1eerB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eerB/nostruct-align/1eerB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eerB/nostruct-align/1eerB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19401/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.645386 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1eesB id: 1eesB alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eesB/nostruct-align/1eesB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eesB/nostruct-align/1eesB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eesB/nostruct-align/1eesB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29806/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.342407 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ef1A id: 1ef1A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ef1A/nostruct-align/1ef1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ef1A/nostruct-align/1ef1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ef1A/nostruct-align/1ef1A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10669/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.956299 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ef1C id: 1ef1C alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ef1C/nostruct-align/1ef1C.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ef1C/nostruct-align/1ef1C.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ef1C/nostruct-align/1ef1C.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11614/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.378418 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ef8A id: 1ef8A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ef8A/nostruct-align/1ef8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ef8A/nostruct-align/1ef8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ef8A/nostruct-align/1ef8A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2290/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.405457 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1efcA id: 1efcA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1efcA/nostruct-align/1efcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1efcA/nostruct-align/1efcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1efcA/nostruct-align/1efcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18868/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.656372 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1efdN id: 1efdN alignment found: /projects/compbio/experiments/models.97/pdb/1e/1efdN/nostruct-align/1efdN.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1efdN/nostruct-align/1efdN.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1efdN/nostruct-align/1efdN.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16362/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.410400 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1efgA_1 id: 1efgA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1e/1efgA_1/nostruct-align/1efgA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1efgA_1/nostruct-align/1efgA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1e/1efgA_1/nostruct-align/1efgA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19965/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.360413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1efgA_2 id: 1efgA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1e/1efgA_2/nostruct-align/1efgA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1efgA_2/nostruct-align/1efgA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1e/1efgA_2/nostruct-align/1efgA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1832/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.214355 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1efgA_3 id: 1efgA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1e/1efgA_3/nostruct-align/1efgA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1efgA_3/nostruct-align/1efgA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1e/1efgA_3/nostruct-align/1efgA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20995/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.183350 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1efgA_4 id: 1efgA_4 alignment found: /projects/compbio4/experiments/models.97/domains/1e/1efgA_4/nostruct-align/1efgA_4.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1efgA_4/nostruct-align/1efgA_4.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1e/1efgA_4/nostruct-align/1efgA_4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29344/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.863403 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1efiD id: 1efiD alignment found: /projects/compbio/experiments/models.97/pdb/1e/1efiD/nostruct-align/1efiD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1efiD/nostruct-align/1efiD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1efiD/nostruct-align/1efiD.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5129/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.396362 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1efm id: 1efm alignment found: /projects/compbio/experiments/models.97/pdb/1e/1efm/nostruct-align/1efm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1efm/nostruct-align/1efm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1efm/nostruct-align/1efm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12101/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.092468 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1efnB id: 1efnB alignment found: /projects/compbio/experiments/models.97/pdb/1e/1efnB/nostruct-align/1efnB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1efnB/nostruct-align/1efnB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1efnB/nostruct-align/1efnB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32213/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.487427 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1eft_1 id: 1eft_1 alignment found: /projects/compbio4/experiments/models.97/domains/1e/1eft_1/nostruct-align/1eft_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1eft_1/nostruct-align/1eft_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1e/1eft_1/nostruct-align/1eft_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12169/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.642456 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1eft_2 id: 1eft_2 alignment found: /projects/compbio4/experiments/models.97/domains/1e/1eft_2/nostruct-align/1eft_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1eft_2/nostruct-align/1eft_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1e/1eft_2/nostruct-align/1eft_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13466/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.545410 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1eft_3 id: 1eft_3 alignment found: /projects/compbio4/experiments/models.97/domains/1e/1eft_3/nostruct-align/1eft_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1eft_3/nostruct-align/1eft_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1e/1eft_3/nostruct-align/1eft_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26369/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.927429 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1efuB id: 1efuB alignment found: /projects/compbio/experiments/models.97/pdb/1e/1efuB/nostruct-align/1efuB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1efuB/nostruct-align/1efuB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1efuB/nostruct-align/1efuB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25745/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.212402 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1efvA id: 1efvA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1efvA/nostruct-align/1efvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1efvA/nostruct-align/1efvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1efvA/nostruct-align/1efvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22045/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.224426 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1efvB id: 1efvB alignment found: /projects/compbio/experiments/models.97/pdb/1e/1efvB/nostruct-align/1efvB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1efvB/nostruct-align/1efvB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1efvB/nostruct-align/1efvB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27971/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.578430 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1egaA id: 1egaA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1egaA/nostruct-align/1egaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1egaA/nostruct-align/1egaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1egaA/nostruct-align/1egaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7634/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.637451 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1egf id: 1egf alignment found: /projects/compbio/experiments/models.97/pdb/1e/1egf/nostruct-align/1egf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1egf/nostruct-align/1egf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1egf/nostruct-align/1egf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6420/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.648438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ego id: 1ego alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ego/nostruct-align/1ego.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ego/nostruct-align/1ego.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ego/nostruct-align/1ego.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4294/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.169434 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1egpA id: 1egpA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1egpA/nostruct-align/1egpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1egpA/nostruct-align/1egpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1egpA/nostruct-align/1egpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25229/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.613403 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1egpB id: 1egpB alignment found: /projects/compbio/experiments/models.97/pdb/1e/1egpB/nostruct-align/1egpB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1egpB/nostruct-align/1egpB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1egpB/nostruct-align/1egpB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31618/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.820435 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1egr id: 1egr alignment found: /projects/compbio/experiments/models.97/pdb/1e/1egr/nostruct-align/1egr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1egr/nostruct-align/1egr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1egr/nostruct-align/1egr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3022/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.282471 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1eh2 id: 1eh2 alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eh2/nostruct-align/1eh2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eh2/nostruct-align/1eh2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eh2/nostruct-align/1eh2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24118/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.420288 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ehs id: 1ehs alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ehs/nostruct-align/1ehs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ehs/nostruct-align/1ehs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ehs/nostruct-align/1ehs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4129/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.510437 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ehyA id: 1ehyA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ehyA/nostruct-align/1ehyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ehyA/nostruct-align/1ehyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ehyA/nostruct-align/1ehyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16631/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.720337 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ei9A id: 1ei9A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ei9A/nostruct-align/1ei9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ei9A/nostruct-align/1ei9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ei9A/nostruct-align/1ei9A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26054/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.690369 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1eia id: 1eia alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eia/nostruct-align/1eia.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eia/nostruct-align/1eia.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eia/nostruct-align/1eia.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20261/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.798462 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1eit id: 1eit alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eit/nostruct-align/1eit.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eit/nostruct-align/1eit.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eit/nostruct-align/1eit.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1651/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.507385 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1eiyB id: 1eiyB alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eiyB/nostruct-align/1eiyB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eiyB/nostruct-align/1eiyB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eiyB/nostruct-align/1eiyB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16289/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.454468 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ej3A id: 1ej3A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ej3A/nostruct-align/1ej3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ej3A/nostruct-align/1ej3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ej3A/nostruct-align/1ej3A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-627/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.015381 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ej5A id: 1ej5A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ej5A/nostruct-align/1ej5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ej5A/nostruct-align/1ej5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ej5A/nostruct-align/1ej5A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25553/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.976440 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ej8A id: 1ej8A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ej8A/nostruct-align/1ej8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ej8A/nostruct-align/1ej8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ej8A/nostruct-align/1ej8A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29021/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.087341 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ejgA id: 1ejgA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ejgA/nostruct-align/1ejgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ejgA/nostruct-align/1ejgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ejgA/nostruct-align/1ejgA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30307/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.594482 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ejhA id: 1ejhA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ejhA/nostruct-align/1ejhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ejhA/nostruct-align/1ejhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ejhA/nostruct-align/1ejhA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30358/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.932373 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ejkA id: 1ejkA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ejkA/nostruct-align/1ejkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ejkA/nostruct-align/1ejkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ejkA/nostruct-align/1ejkA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32581/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.578369 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ek0A id: 1ek0A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ek0A/nostruct-align/1ek0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ek0A/nostruct-align/1ek0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ek0A/nostruct-align/1ek0A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25562/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.396423 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ekcC id: 1ekcC alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ekcC/nostruct-align/1ekcC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ekcC/nostruct-align/1ekcC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ekcC/nostruct-align/1ekcC.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19677/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.658447 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ekjB id: 1ekjB alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ekjB/nostruct-align/1ekjB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ekjB/nostruct-align/1ekjB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ekjB/nostruct-align/1ekjB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23605/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.335388 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1el6B id: 1el6B alignment found: /projects/compbio/experiments/models.97/pdb/1e/1el6B/nostruct-align/1el6B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1el6B/nostruct-align/1el6B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1el6B/nostruct-align/1el6B.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32418/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.435364 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1elkA id: 1elkA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1elkA/nostruct-align/1elkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1elkA/nostruct-align/1elkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1elkA/nostruct-align/1elkA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19784/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.113403 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1elqA id: 1elqA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1elqA/nostruct-align/1elqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1elqA/nostruct-align/1elqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1elqA/nostruct-align/1elqA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3175/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.428467 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1elrA id: 1elrA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1elrA/nostruct-align/1elrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1elrA/nostruct-align/1elrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1elrA/nostruct-align/1elrA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8313/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.572388 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1elwA id: 1elwA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1elwA/nostruct-align/1elwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1elwA/nostruct-align/1elwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1elwA/nostruct-align/1elwA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29380/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.839355 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1elyA id: 1elyA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1elyA/nostruct-align/1elyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1elyA/nostruct-align/1elyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1elyA/nostruct-align/1elyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9400/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.377441 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1em2A id: 1em2A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1em2A/nostruct-align/1em2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1em2A/nostruct-align/1em2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1em2A/nostruct-align/1em2A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13684/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.240356 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ema id: 1ema alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ema/nostruct-align/1ema.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ema/nostruct-align/1ema.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ema/nostruct-align/1ema.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15141/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.156372 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1emn id: 1emn alignment found: /projects/compbio/experiments/models.97/pdb/1e/1emn/nostruct-align/1emn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1emn/nostruct-align/1emn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1emn/nostruct-align/1emn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26795/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.300415 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1en7A id: 1en7A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1en7A/nostruct-align/1en7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1en7A/nostruct-align/1en7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1en7A/nostruct-align/1en7A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11833/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.478394 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1enfA id: 1enfA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1enfA/nostruct-align/1enfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1enfA/nostruct-align/1enfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1enfA/nostruct-align/1enfA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3401/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.650391 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1enh id: 1enh alignment found: /projects/compbio/experiments/models.97/pdb/1e/1enh/nostruct-align/1enh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1enh/nostruct-align/1enh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1enh/nostruct-align/1enh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18241/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.383423 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1enp id: 1enp alignment found: /projects/compbio/experiments/models.97/pdb/1e/1enp/nostruct-align/1enp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1enp/nostruct-align/1enp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1enp/nostruct-align/1enp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13239/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -23.063354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1envA id: 1envA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1envA/nostruct-align/1envA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1envA/nostruct-align/1envA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1envA/nostruct-align/1envA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29486/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.593384 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1enwA id: 1enwA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1enwA/nostruct-align/1enwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1enwA/nostruct-align/1enwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1enwA/nostruct-align/1enwA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14058/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.831421 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1eny id: 1eny alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eny/nostruct-align/1eny.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eny/nostruct-align/1eny.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eny/nostruct-align/1eny.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9615/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -23.516418 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1eo0A id: 1eo0A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eo0A/nostruct-align/1eo0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eo0A/nostruct-align/1eo0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eo0A/nostruct-align/1eo0A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24175/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.704468 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1epaA id: 1epaA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1epaA/nostruct-align/1epaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1epaA/nostruct-align/1epaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1epaA/nostruct-align/1epaA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11074/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.860352 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1epbA id: 1epbA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1epbA/nostruct-align/1epbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1epbA/nostruct-align/1epbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1epbA/nostruct-align/1epbA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-25976/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.639404 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1epnE id: 1epnE alignment found: /projects/compbio/experiments/models.97/pdb/1e/1epnE/nostruct-align/1epnE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1epnE/nostruct-align/1epnE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1epnE/nostruct-align/1epnE.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-6542/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.240356 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1eps id: 1eps alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eps/nostruct-align/1eps.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eps/nostruct-align/1eps.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eps/nostruct-align/1eps.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30107/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.554382 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1eq6A id: 1eq6A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eq6A/nostruct-align/1eq6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eq6A/nostruct-align/1eq6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eq6A/nostruct-align/1eq6A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1665/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.368408 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1eqfA id: 1eqfA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eqfA/nostruct-align/1eqfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eqfA/nostruct-align/1eqfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eqfA/nostruct-align/1eqfA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25118/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.373413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1equ id: 1equ alignment found: /projects/compbio/experiments/models.97/pdb/1e/1equ/nostruct-align/1equ.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1equ/nostruct-align/1equ.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1equ/nostruct-align/1equ.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22301/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -21.278442 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1erd id: 1erd alignment found: /projects/compbio/experiments/models.97/pdb/1e/1erd/nostruct-align/1erd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1erd/nostruct-align/1erd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1erd/nostruct-align/1erd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19566/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.828369 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1eriA id: 1eriA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eriA/nostruct-align/1eriA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eriA/nostruct-align/1eriA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eriA/nostruct-align/1eriA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7349/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.810425 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1erp id: 1erp alignment found: /projects/compbio/experiments/models.97/pdb/1e/1erp/nostruct-align/1erp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1erp/nostruct-align/1erp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1erp/nostruct-align/1erp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23631/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.105408 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1erv id: 1erv alignment found: /projects/compbio/experiments/models.97/pdb/1e/1erv/nostruct-align/1erv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1erv/nostruct-align/1erv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1erv/nostruct-align/1erv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27013/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.140381 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ery id: 1ery alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ery/nostruct-align/1ery.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ery/nostruct-align/1ery.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ery/nostruct-align/1ery.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6851/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.178406 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1esc id: 1esc alignment found: /projects/compbio/experiments/models.97/pdb/1e/1esc/nostruct-align/1esc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1esc/nostruct-align/1esc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1esc/nostruct-align/1esc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4790/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.306335 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1esl id: 1esl alignment found: /projects/compbio/experiments/models.97/pdb/1e/1esl/nostruct-align/1esl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1esl/nostruct-align/1esl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1esl/nostruct-align/1esl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9588/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.386475 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1esl_1 id: 1esl_1 alignment found: /projects/compbio4/experiments/models.97/domains/1e/1esl_1/nostruct-align/1esl_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1esl_1/nostruct-align/1esl_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1e/1esl_1/nostruct-align/1esl_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20284/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.744385 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1esl_2 id: 1esl_2 alignment found: /projects/compbio4/experiments/models.97/domains/1e/1esl_2/nostruct-align/1esl_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1esl_2/nostruct-align/1esl_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1e/1esl_2/nostruct-align/1esl_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2770/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.190369 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1eso id: 1eso alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eso/nostruct-align/1eso.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eso/nostruct-align/1eso.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eso/nostruct-align/1eso.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32424/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.718445 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1et9A id: 1et9A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1et9A/nostruct-align/1et9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1et9A/nostruct-align/1et9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1et9A/nostruct-align/1et9A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24286/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.927368 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1eta1 id: 1eta1 alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eta1/nostruct-align/1eta1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eta1/nostruct-align/1eta1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eta1/nostruct-align/1eta1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20766/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.084351 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1etb1 id: 1etb1 alignment found: /projects/compbio/experiments/models.97/pdb/1e/1etb1/nostruct-align/1etb1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1etb1/nostruct-align/1etb1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1etb1/nostruct-align/1etb1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4894/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.843384 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1etpA id: 1etpA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1etpA/nostruct-align/1etpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1etpA/nostruct-align/1etpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1etpA/nostruct-align/1etpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1520/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.136353 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1euhA id: 1euhA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1euhA/nostruct-align/1euhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1euhA/nostruct-align/1euhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1euhA/nostruct-align/1euhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11750/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.868408 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1eur id: 1eur alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eur/nostruct-align/1eur.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eur/nostruct-align/1eur.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eur/nostruct-align/1eur.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27881/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.325317 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1eut id: 1eut alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eut/nostruct-align/1eut.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eut/nostruct-align/1eut.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eut/nostruct-align/1eut.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2972/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.836426 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1euu id: 1euu alignment found: /projects/compbio/experiments/models.97/pdb/1e/1euu/nostruct-align/1euu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1euu/nostruct-align/1euu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1euu/nostruct-align/1euu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21687/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.891357 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1euvA id: 1euvA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1euvA/nostruct-align/1euvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1euvA/nostruct-align/1euvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1euvA/nostruct-align/1euvA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31822/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.795410 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1evhA id: 1evhA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1evhA/nostruct-align/1evhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1evhA/nostruct-align/1evhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1evhA/nostruct-align/1evhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10207/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.694336 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ewaA id: 1ewaA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ewaA/nostruct-align/1ewaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ewaA/nostruct-align/1ewaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ewaA/nostruct-align/1ewaA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6819/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.857422 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ewiA id: 1ewiA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ewiA/nostruct-align/1ewiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ewiA/nostruct-align/1ewiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ewiA/nostruct-align/1ewiA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-219/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.840393 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ewxA id: 1ewxA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ewxA/nostruct-align/1ewxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ewxA/nostruct-align/1ewxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ewxA/nostruct-align/1ewxA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9561/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.324463 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ex1A id: 1ex1A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ex1A/nostruct-align/1ex1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ex1A/nostruct-align/1ex1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ex1A/nostruct-align/1ex1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24094/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.673340 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1exg id: 1exg alignment found: /projects/compbio/experiments/models.97/pdb/1e/1exg/nostruct-align/1exg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1exg/nostruct-align/1exg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1exg/nostruct-align/1exg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28695/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.065308 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1exnA id: 1exnA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1exnA/nostruct-align/1exnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1exnA/nostruct-align/1exnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1exnA/nostruct-align/1exnA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31603/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.171509 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1exnB id: 1exnB alignment found: /projects/compbio/experiments/models.97/pdb/1e/1exnB/nostruct-align/1exnB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1exnB/nostruct-align/1exnB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1exnB/nostruct-align/1exnB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25847/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.768311 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1extA id: 1extA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1extA/nostruct-align/1extA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1extA/nostruct-align/1extA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1extA/nostruct-align/1extA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26134/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.747437 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1eyvA id: 1eyvA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eyvA/nostruct-align/1eyvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eyvA/nostruct-align/1eyvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eyvA/nostruct-align/1eyvA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29858/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.141357 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ez0A id: 1ez0A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ez0A/nostruct-align/1ez0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ez0A/nostruct-align/1ez0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ez0A/nostruct-align/1ez0A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4933/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.767456 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ezm id: 1ezm alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ezm/nostruct-align/1ezm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ezm/nostruct-align/1ezm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ezm/nostruct-align/1ezm.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7502/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.914429 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ezm_1 id: 1ezm_1 alignment found: /projects/compbio4/experiments/models.97/domains/1e/1ezm_1/nostruct-align/1ezm_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1ezm_1/nostruct-align/1ezm_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1e/1ezm_1/nostruct-align/1ezm_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22114/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.399414 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ezm_2 id: 1ezm_2 alignment found: /projects/compbio4/experiments/models.97/domains/1e/1ezm_2/nostruct-align/1ezm_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1ezm_2/nostruct-align/1ezm_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1e/1ezm_2/nostruct-align/1ezm_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12981/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.185425 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1f13A id: 1f13A alignment found: /projects/compbio/experiments/models.97/pdb/1f/1f13A/nostruct-align/1f13A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1f13A/nostruct-align/1f13A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1f13A/nostruct-align/1f13A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2960/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.053467 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1f3z id: 1f3z alignment found: /projects/compbio/experiments/models.97/pdb/1f/1f3z/nostruct-align/1f3z.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1f3z/nostruct-align/1f3z.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1f3z/nostruct-align/1f3z.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6334/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.719360 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1f58P id: 1f58P alignment found: /projects/compbio/experiments/models.97/pdb/1f/1f58P/nostruct-align/1f58P.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1f58P/nostruct-align/1f58P.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1f58P/nostruct-align/1f58P.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3014/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -4.436401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fadA id: 1fadA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fadA/nostruct-align/1fadA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fadA/nostruct-align/1fadA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fadA/nostruct-align/1fadA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24051/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.815308 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1faq id: 1faq alignment found: /projects/compbio/experiments/models.97/pdb/1f/1faq/nostruct-align/1faq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1faq/nostruct-align/1faq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1faq/nostruct-align/1faq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18423/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.932434 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1far id: 1far alignment found: /projects/compbio/experiments/models.97/pdb/1f/1far/nostruct-align/1far.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1far/nostruct-align/1far.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1far/nostruct-align/1far.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26457/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.932434 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fas id: 1fas alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fas/nostruct-align/1fas.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fas/nostruct-align/1fas.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fas/nostruct-align/1fas.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32638/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.090332 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fbaA id: 1fbaA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fbaA/nostruct-align/1fbaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fbaA/nostruct-align/1fbaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fbaA/nostruct-align/1fbaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18643/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.231445 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fbnA id: 1fbnA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fbnA/nostruct-align/1fbnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fbnA/nostruct-align/1fbnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fbnA/nostruct-align/1fbnA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16223/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.922363 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fbr id: 1fbr alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fbr/nostruct-align/1fbr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fbr/nostruct-align/1fbr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fbr/nostruct-align/1fbr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8181/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.984375 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fbr_1 id: 1fbr_1 alignment found: /projects/compbio4/experiments/models.97/domains/1f/1fbr_1/nostruct-align/1fbr_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1f/1fbr_1/nostruct-align/1fbr_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1f/1fbr_1/nostruct-align/1fbr_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18106/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.262329 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fbr_2 id: 1fbr_2 alignment found: /projects/compbio4/experiments/models.97/domains/1f/1fbr_2/nostruct-align/1fbr_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1f/1fbr_2/nostruct-align/1fbr_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1f/1fbr_2/nostruct-align/1fbr_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30095/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.304321 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fc1A id: 1fc1A alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fc1A/nostruct-align/1fc1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fc1A/nostruct-align/1fc1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fc1A/nostruct-align/1fc1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22882/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.155396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fc2C id: 1fc2C alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fc2C/nostruct-align/1fc2C.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fc2C/nostruct-align/1fc2C.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fc2C/nostruct-align/1fc2C.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16586/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.461426 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fca id: 1fca alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fca/nostruct-align/1fca.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fca/nostruct-align/1fca.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fca/nostruct-align/1fca.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6742/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.718445 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fcdA id: 1fcdA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fcdA/nostruct-align/1fcdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fcdA/nostruct-align/1fcdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fcdA/nostruct-align/1fcdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10836/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -23.366455 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fcdA_1 id: 1fcdA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1f/1fcdA_1/nostruct-align/1fcdA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1f/1fcdA_1/nostruct-align/1fcdA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1f/1fcdA_1/nostruct-align/1fcdA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30732/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -19.272339 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fcdA_2 id: 1fcdA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1f/1fcdA_2/nostruct-align/1fcdA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1f/1fcdA_2/nostruct-align/1fcdA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1f/1fcdA_2/nostruct-align/1fcdA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10296/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.728394 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fcdA_3 id: 1fcdA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1f/1fcdA_3/nostruct-align/1fcdA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1f/1fcdA_3/nostruct-align/1fcdA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1f/1fcdA_3/nostruct-align/1fcdA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16814/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.862366 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fcdC id: 1fcdC alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fcdC/nostruct-align/1fcdC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fcdC/nostruct-align/1fcdC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fcdC/nostruct-align/1fcdC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25036/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.299438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fcdC_1 id: 1fcdC_1 alignment found: /projects/compbio4/experiments/models.97/domains/1f/1fcdC_1/nostruct-align/1fcdC_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1f/1fcdC_1/nostruct-align/1fcdC_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1f/1fcdC_1/nostruct-align/1fcdC_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26242/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.503418 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fcdC_2 id: 1fcdC_2 alignment found: /projects/compbio4/experiments/models.97/domains/1f/1fcdC_2/nostruct-align/1fcdC_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1f/1fcdC_2/nostruct-align/1fcdC_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1f/1fcdC_2/nostruct-align/1fcdC_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4503/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.485352 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fce id: 1fce alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fce/nostruct-align/1fce.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fce/nostruct-align/1fce.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fce/nostruct-align/1fce.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27186/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.287415 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fct id: 1fct alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fct/nostruct-align/1fct.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fct/nostruct-align/1fct.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fct/nostruct-align/1fct.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3092/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.031433 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fd2 id: 1fd2 alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fd2/nostruct-align/1fd2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fd2/nostruct-align/1fd2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fd2/nostruct-align/1fd2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3131/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.188416 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fdd id: 1fdd alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fdd/nostruct-align/1fdd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fdd/nostruct-align/1fdd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fdd/nostruct-align/1fdd.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32376/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.248413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fdi id: 1fdi alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fdi/nostruct-align/1fdi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fdi/nostruct-align/1fdi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fdi/nostruct-align/1fdi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6221/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.020447 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fdm id: 1fdm alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fdm/nostruct-align/1fdm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fdm/nostruct-align/1fdm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fdm/nostruct-align/1fdm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-476/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.154419 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fdo id: 1fdo alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fdo/nostruct-align/1fdo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fdo/nostruct-align/1fdo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fdo/nostruct-align/1fdo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10032/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.111450 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fdr id: 1fdr alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fdr/nostruct-align/1fdr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fdr/nostruct-align/1fdr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fdr/nostruct-align/1fdr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-751/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.133301 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fds id: 1fds alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fds/nostruct-align/1fds.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fds/nostruct-align/1fds.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fds/nostruct-align/1fds.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16370/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -22.033325 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fehA id: 1fehA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fehA/nostruct-align/1fehA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fehA/nostruct-align/1fehA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fehA/nostruct-align/1fehA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20244/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.183472 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fepA id: 1fepA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fepA/nostruct-align/1fepA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fepA/nostruct-align/1fepA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fepA/nostruct-align/1fepA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3469/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -21.076416 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fgjA id: 1fgjA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fgjA/nostruct-align/1fgjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fgjA/nostruct-align/1fgjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fgjA/nostruct-align/1fgjA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9821/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.421448 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fgkA id: 1fgkA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fgkA/nostruct-align/1fgkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fgkA/nostruct-align/1fgkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fgkA/nostruct-align/1fgkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1239/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.127441 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fglB id: 1fglB alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fglB/nostruct-align/1fglB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fglB/nostruct-align/1fglB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fglB/nostruct-align/1fglB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21170/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -4.729370 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fgs id: 1fgs alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fgs/nostruct-align/1fgs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fgs/nostruct-align/1fgs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fgs/nostruct-align/1fgs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23714/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.494385 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fha id: 1fha alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fha/nostruct-align/1fha.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fha/nostruct-align/1fha.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fha/nostruct-align/1fha.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26021/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.021362 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fht id: 1fht alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fht/nostruct-align/1fht.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fht/nostruct-align/1fht.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fht/nostruct-align/1fht.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19223/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.679443 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fipA id: 1fipA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fipA/nostruct-align/1fipA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fipA/nostruct-align/1fipA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fipA/nostruct-align/1fipA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24095/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.001465 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fit id: 1fit alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fit/nostruct-align/1fit.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fit/nostruct-align/1fit.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fit/nostruct-align/1fit.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10639/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.618469 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fivA id: 1fivA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fivA/nostruct-align/1fivA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fivA/nostruct-align/1fivA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fivA/nostruct-align/1fivA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24575/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.702454 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fiy id: 1fiy alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fiy/nostruct-align/1fiy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fiy/nostruct-align/1fiy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fiy/nostruct-align/1fiy.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31583/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.541443 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fjlA id: 1fjlA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fjlA/nostruct-align/1fjlA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fjlA/nostruct-align/1fjlA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fjlA/nostruct-align/1fjlA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9566/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.849365 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fjmA id: 1fjmA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fjmA/nostruct-align/1fjmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fjmA/nostruct-align/1fjmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fjmA/nostruct-align/1fjmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30107/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.022461 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fkd id: 1fkd alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fkd/nostruct-align/1fkd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fkd/nostruct-align/1fkd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fkd/nostruct-align/1fkd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23169/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.271362 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fkj id: 1fkj alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fkj/nostruct-align/1fkj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fkj/nostruct-align/1fkj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fkj/nostruct-align/1fkj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26876/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.277405 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1flcA id: 1flcA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1flcA/nostruct-align/1flcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1flcA/nostruct-align/1flcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1flcA/nostruct-align/1flcA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-470/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.783447 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1flcB id: 1flcB alignment found: /projects/compbio/experiments/models.97/pdb/1f/1flcB/nostruct-align/1flcB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1flcB/nostruct-align/1flcB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1flcB/nostruct-align/1flcB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22261/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.258423 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fleI id: 1fleI alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fleI/nostruct-align/1fleI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fleI/nostruct-align/1fleI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fleI/nostruct-align/1fleI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5739/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.974426 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fliA id: 1fliA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fliA/nostruct-align/1fliA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fliA/nostruct-align/1fliA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fliA/nostruct-align/1fliA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11092/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.021484 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1flmA id: 1flmA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1flmA/nostruct-align/1flmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1flmA/nostruct-align/1flmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1flmA/nostruct-align/1flmA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27506/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.834412 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1flp id: 1flp alignment found: /projects/compbio/experiments/models.97/pdb/1f/1flp/nostruct-align/1flp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1flp/nostruct-align/1flp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1flp/nostruct-align/1flp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13562/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.857422 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fltV id: 1fltV alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fltV/nostruct-align/1fltV.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fltV/nostruct-align/1fltV.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fltV/nostruct-align/1fltV.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26334/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.063354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fltX id: 1fltX alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fltX/nostruct-align/1fltX.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fltX/nostruct-align/1fltX.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fltX/nostruct-align/1fltX.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-533/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.540344 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fltY id: 1fltY alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fltY/nostruct-align/1fltY.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fltY/nostruct-align/1fltY.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fltY/nostruct-align/1fltY.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26548/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.502380 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fmb id: 1fmb alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fmb/nostruct-align/1fmb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fmb/nostruct-align/1fmb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fmb/nostruct-align/1fmb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30495/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.939392 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fmk id: 1fmk alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fmk/nostruct-align/1fmk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fmk/nostruct-align/1fmk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fmk/nostruct-align/1fmk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4768/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.951355 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fmtA id: 1fmtA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fmtA/nostruct-align/1fmtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fmtA/nostruct-align/1fmtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fmtA/nostruct-align/1fmtA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-800/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.796387 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fmtB id: 1fmtB alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fmtB/nostruct-align/1fmtB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fmtB/nostruct-align/1fmtB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fmtB/nostruct-align/1fmtB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29030/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.394348 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fna id: 1fna alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fna/nostruct-align/1fna.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fna/nostruct-align/1fna.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fna/nostruct-align/1fna.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11909/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.231323 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fnb_1 id: 1fnb_1 alignment found: /projects/compbio4/experiments/models.97/domains/1f/1fnb_1/nostruct-align/1fnb_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1f/1fnb_1/nostruct-align/1fnb_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1f/1fnb_1/nostruct-align/1fnb_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11219/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.439453 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fnb_2 id: 1fnb_2 alignment found: /projects/compbio4/experiments/models.97/domains/1f/1fnb_2/nostruct-align/1fnb_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1f/1fnb_2/nostruct-align/1fnb_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1f/1fnb_2/nostruct-align/1fnb_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31999/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.033325 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fnc id: 1fnc alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fnc/nostruct-align/1fnc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fnc/nostruct-align/1fnc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fnc/nostruct-align/1fnc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15671/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.559448 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fnd id: 1fnd alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fnd/nostruct-align/1fnd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fnd/nostruct-align/1fnd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fnd/nostruct-align/1fnd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16778/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.247437 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fnf id: 1fnf alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fnf/nostruct-align/1fnf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fnf/nostruct-align/1fnf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fnf/nostruct-align/1fnf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29966/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.236450 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fnhA id: 1fnhA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fnhA/nostruct-align/1fnhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fnhA/nostruct-align/1fnhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fnhA/nostruct-align/1fnhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18871/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.361328 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fohA id: 1fohA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fohA/nostruct-align/1fohA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fohA/nostruct-align/1fohA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fohA/nostruct-align/1fohA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3185/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.748413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fokA id: 1fokA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fokA/nostruct-align/1fokA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fokA/nostruct-align/1fokA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fokA/nostruct-align/1fokA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25983/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.820435 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1forL id: 1forL alignment found: /projects/compbio/experiments/models.97/pdb/1f/1forL/nostruct-align/1forL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1forL/nostruct-align/1forL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1forL/nostruct-align/1forL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14054/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.588501 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fosE id: 1fosE alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fosE/nostruct-align/1fosE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fosE/nostruct-align/1fosE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fosE/nostruct-align/1fosE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13579/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -19.260376 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fosF id: 1fosF alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fosF/nostruct-align/1fosF.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fosF/nostruct-align/1fosF.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fosF/nostruct-align/1fosF.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29502/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -19.524414 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fpkA id: 1fpkA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fpkA/nostruct-align/1fpkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fpkA/nostruct-align/1fpkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fpkA/nostruct-align/1fpkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20321/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.870422 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fps id: 1fps alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fps/nostruct-align/1fps.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fps/nostruct-align/1fps.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fps/nostruct-align/1fps.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11868/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.480347 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1frb id: 1frb alignment found: /projects/compbio/experiments/models.97/pdb/1f/1frb/nostruct-align/1frb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1frb/nostruct-align/1frb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1frb/nostruct-align/1frb.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15258/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.738403 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1frd id: 1frd alignment found: /projects/compbio/experiments/models.97/pdb/1f/1frd/nostruct-align/1frd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1frd/nostruct-align/1frd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1frd/nostruct-align/1frd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31807/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.029358 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fre id: 1fre alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fre/nostruct-align/1fre.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fre/nostruct-align/1fre.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fre/nostruct-align/1fre.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23051/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.838379 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1frpA id: 1frpA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1frpA/nostruct-align/1frpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1frpA/nostruct-align/1frpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1frpA/nostruct-align/1frpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22803/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.114441 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1frvB id: 1frvB alignment found: /projects/compbio/experiments/models.97/pdb/1f/1frvB/nostruct-align/1frvB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1frvB/nostruct-align/1frvB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1frvB/nostruct-align/1frvB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19734/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.073425 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fsb id: 1fsb alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fsb/nostruct-align/1fsb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fsb/nostruct-align/1fsb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fsb/nostruct-align/1fsb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2762/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.240356 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fsz id: 1fsz alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fsz/nostruct-align/1fsz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fsz/nostruct-align/1fsz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fsz/nostruct-align/1fsz.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1871/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.252380 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ft1A id: 1ft1A alignment found: /projects/compbio/experiments/models.97/pdb/1f/1ft1A/nostruct-align/1ft1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1ft1A/nostruct-align/1ft1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1ft1A/nostruct-align/1ft1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8072/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.343384 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ft1B id: 1ft1B alignment found: /projects/compbio/experiments/models.97/pdb/1f/1ft1B/nostruct-align/1ft1B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1ft1B/nostruct-align/1ft1B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1ft1B/nostruct-align/1ft1B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13782/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.392456 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ftpA id: 1ftpA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1ftpA/nostruct-align/1ftpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1ftpA/nostruct-align/1ftpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1ftpA/nostruct-align/1ftpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27983/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.203369 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ftrA id: 1ftrA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1ftrA/nostruct-align/1ftrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1ftrA/nostruct-align/1ftrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1ftrA/nostruct-align/1ftrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13305/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.041382 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ftt id: 1ftt alignment found: /projects/compbio/experiments/models.97/pdb/1f/1ftt/nostruct-align/1ftt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1ftt/nostruct-align/1ftt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1ftt/nostruct-align/1ftt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11203/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.770386 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fua id: 1fua alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fua/nostruct-align/1fua.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fua/nostruct-align/1fua.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fua/nostruct-align/1fua.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28485/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.249390 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fuiA id: 1fuiA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fuiA/nostruct-align/1fuiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fuiA/nostruct-align/1fuiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fuiA/nostruct-align/1fuiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20361/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.212341 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fumB id: 1fumB alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fumB/nostruct-align/1fumB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fumB/nostruct-align/1fumB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fumB/nostruct-align/1fumB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22493/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.245361 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fumC id: 1fumC alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fumC/nostruct-align/1fumC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fumC/nostruct-align/1fumC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fumC/nostruct-align/1fumC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14201/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.584351 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fumD id: 1fumD alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fumD/nostruct-align/1fumD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fumD/nostruct-align/1fumD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fumD/nostruct-align/1fumD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24866/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.619385 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1furA id: 1furA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1furA/nostruct-align/1furA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1furA/nostruct-align/1furA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1furA/nostruct-align/1furA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9005/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.001404 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fus id: 1fus alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fus/nostruct-align/1fus.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fus/nostruct-align/1fus.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fus/nostruct-align/1fus.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4345/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.675415 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fvkA id: 1fvkA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fvkA/nostruct-align/1fvkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fvkA/nostruct-align/1fvkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fvkA/nostruct-align/1fvkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14006/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.452393 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fvl id: 1fvl alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fvl/nostruct-align/1fvl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fvl/nostruct-align/1fvl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fvl/nostruct-align/1fvl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19425/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.070374 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fwcA id: 1fwcA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fwcA/nostruct-align/1fwcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fwcA/nostruct-align/1fwcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fwcA/nostruct-align/1fwcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16943/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.033447 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fwcB id: 1fwcB alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fwcB/nostruct-align/1fwcB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fwcB/nostruct-align/1fwcB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fwcB/nostruct-align/1fwcB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3529/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.098389 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fwcC id: 1fwcC alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fwcC/nostruct-align/1fwcC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fwcC/nostruct-align/1fwcC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fwcC/nostruct-align/1fwcC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27320/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.275391 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fxd id: 1fxd alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fxd/nostruct-align/1fxd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fxd/nostruct-align/1fxd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fxd/nostruct-align/1fxd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26607/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.008362 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fxrA id: 1fxrA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fxrA/nostruct-align/1fxrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fxrA/nostruct-align/1fxrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fxrA/nostruct-align/1fxrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27933/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.106445 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fyc id: 1fyc alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fyc/nostruct-align/1fyc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fyc/nostruct-align/1fyc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fyc/nostruct-align/1fyc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26586/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.392456 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fzaB id: 1fzaB alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fzaB/nostruct-align/1fzaB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fzaB/nostruct-align/1fzaB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fzaB/nostruct-align/1fzaB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12712/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.672363 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fzcA id: 1fzcA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fzcA/nostruct-align/1fzcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fzcA/nostruct-align/1fzcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fzcA/nostruct-align/1fzcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-797/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.039429 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1fzgD id: 1fzgD alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fzgD/nostruct-align/1fzgD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fzgD/nostruct-align/1fzgD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fzgD/nostruct-align/1fzgD.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29302/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.492371 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1g31A id: 1g31A alignment found: /projects/compbio/experiments/models.97/pdb/1g/1g31A/nostruct-align/1g31A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1g31A/nostruct-align/1g31A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1g31A/nostruct-align/1g31A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13047/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.274353 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1g3p id: 1g3p alignment found: /projects/compbio/experiments/models.97/pdb/1g/1g3p/nostruct-align/1g3p.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1g3p/nostruct-align/1g3p.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1g3p/nostruct-align/1g3p.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5218/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.716431 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gab id: 1gab alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gab/nostruct-align/1gab.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gab/nostruct-align/1gab.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gab/nostruct-align/1gab.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18692/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.241333 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gai id: 1gai alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gai/nostruct-align/1gai.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gai/nostruct-align/1gai.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gai/nostruct-align/1gai.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18460/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.961426 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gal id: 1gal alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gal/nostruct-align/1gal.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gal/nostruct-align/1gal.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gal/nostruct-align/1gal.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8565/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.155334 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gal_1 id: 1gal_1 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gal_1/nostruct-align/1gal_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gal_1/nostruct-align/1gal_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gal_1/nostruct-align/1gal_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18984/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.532410 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gal_2 id: 1gal_2 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gal_2/nostruct-align/1gal_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gal_2/nostruct-align/1gal_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gal_2/nostruct-align/1gal_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11377/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.096375 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1garA id: 1garA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1garA/nostruct-align/1garA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1garA/nostruct-align/1garA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1garA/nostruct-align/1garA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19801/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.937317 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gatA id: 1gatA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gatA/nostruct-align/1gatA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gatA/nostruct-align/1gatA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gatA/nostruct-align/1gatA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-26553/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.178345 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gbs id: 1gbs alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gbs/nostruct-align/1gbs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gbs/nostruct-align/1gbs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gbs/nostruct-align/1gbs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5417/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.583435 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gc1G id: 1gc1G alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gc1G/nostruct-align/1gc1G.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gc1G/nostruct-align/1gc1G.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gc1G/nostruct-align/1gc1G.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32334/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.908386 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gc1H id: 1gc1H alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gc1H/nostruct-align/1gc1H.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gc1H/nostruct-align/1gc1H.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gc1H/nostruct-align/1gc1H.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15106/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.632446 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gca id: 1gca alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gca/nostruct-align/1gca.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gca/nostruct-align/1gca.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gca/nostruct-align/1gca.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23956/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.475403 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gcb id: 1gcb alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gcb/nostruct-align/1gcb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gcb/nostruct-align/1gcb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gcb/nostruct-align/1gcb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12613/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.015381 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gceA id: 1gceA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gceA/nostruct-align/1gceA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gceA/nostruct-align/1gceA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gceA/nostruct-align/1gceA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9460/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.686401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gcf id: 1gcf alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gcf/nostruct-align/1gcf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gcf/nostruct-align/1gcf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gcf/nostruct-align/1gcf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24967/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.139404 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gci id: 1gci alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gci/nostruct-align/1gci.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gci/nostruct-align/1gci.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gci/nostruct-align/1gci.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3956/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.627441 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gcmA id: 1gcmA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gcmA/nostruct-align/1gcmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gcmA/nostruct-align/1gcmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gcmA/nostruct-align/1gcmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20877/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.316406 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gctA id: 1gctA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gctA/nostruct-align/1gctA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gctA/nostruct-align/1gctA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gctA/nostruct-align/1gctA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8133/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.230347 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gd1O id: 1gd1O alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gd1O/nostruct-align/1gd1O.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gd1O/nostruct-align/1gd1O.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gd1O/nostruct-align/1gd1O.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31826/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.524475 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gd1O_1 id: 1gd1O_1 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gd1O_1/nostruct-align/1gd1O_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gd1O_1/nostruct-align/1gd1O_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gd1O_1/nostruct-align/1gd1O_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6794/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.479370 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gd1O_2 id: 1gd1O_2 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gd1O_2/nostruct-align/1gd1O_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gd1O_2/nostruct-align/1gd1O_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gd1O_2/nostruct-align/1gd1O_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9691/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.973389 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gdhA id: 1gdhA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gdhA/nostruct-align/1gdhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gdhA/nostruct-align/1gdhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gdhA/nostruct-align/1gdhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25327/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -20.345398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gdhA_1 id: 1gdhA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gdhA_1/nostruct-align/1gdhA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gdhA_1/nostruct-align/1gdhA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gdhA_1/nostruct-align/1gdhA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32082/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.113403 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gdhA_2 id: 1gdhA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gdhA_2/nostruct-align/1gdhA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gdhA_2/nostruct-align/1gdhA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gdhA_2/nostruct-align/1gdhA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-51/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -19.736450 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gdoA id: 1gdoA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gdoA/nostruct-align/1gdoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gdoA/nostruct-align/1gdoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gdoA/nostruct-align/1gdoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19476/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.886475 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gdoB id: 1gdoB alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gdoB/nostruct-align/1gdoB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gdoB/nostruct-align/1gdoB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gdoB/nostruct-align/1gdoB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25042/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.787354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gen id: 1gen alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gen/nostruct-align/1gen.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gen/nostruct-align/1gen.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gen/nostruct-align/1gen.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16095/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.368408 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gesA_1 id: 1gesA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gesA_1/nostruct-align/1gesA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gesA_1/nostruct-align/1gesA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gesA_1/nostruct-align/1gesA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15366/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -21.845398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gesA_2 id: 1gesA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gesA_2/nostruct-align/1gesA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gesA_2/nostruct-align/1gesA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gesA_2/nostruct-align/1gesA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-223/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -23.849365 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gesA_3 id: 1gesA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gesA_3/nostruct-align/1gesA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gesA_3/nostruct-align/1gesA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gesA_3/nostruct-align/1gesA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12863/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.845337 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gfs id: 1gfs alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gfs/nostruct-align/1gfs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gfs/nostruct-align/1gfs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gfs/nostruct-align/1gfs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6510/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.337402 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gggB id: 1gggB alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gggB/nostruct-align/1gggB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gggB/nostruct-align/1gggB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gggB/nostruct-align/1gggB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22308/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.408447 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ggtA_1 id: 1ggtA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1ggtA_1/nostruct-align/1ggtA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1ggtA_1/nostruct-align/1ggtA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1ggtA_1/nostruct-align/1ggtA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2092/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.433350 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ggtA_2 id: 1ggtA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1ggtA_2/nostruct-align/1ggtA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1ggtA_2/nostruct-align/1ggtA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1ggtA_2/nostruct-align/1ggtA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19290/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.678345 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ggtA_3 id: 1ggtA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1ggtA_3/nostruct-align/1ggtA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1ggtA_3/nostruct-align/1ggtA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1ggtA_3/nostruct-align/1ggtA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15494/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.130371 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ggtA_4 id: 1ggtA_4 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1ggtA_4/nostruct-align/1ggtA_4.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1ggtA_4/nostruct-align/1ggtA_4.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1ggtA_4/nostruct-align/1ggtA_4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15564/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.131348 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ggtB id: 1ggtB alignment found: /projects/compbio/experiments/models.97/pdb/1g/1ggtB/nostruct-align/1ggtB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1ggtB/nostruct-align/1ggtB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1ggtB/nostruct-align/1ggtB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-10866/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.197327 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ghj id: 1ghj alignment found: /projects/compbio/experiments/models.97/pdb/1g/1ghj/nostruct-align/1ghj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1ghj/nostruct-align/1ghj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1ghj/nostruct-align/1ghj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19560/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.853394 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ghr id: 1ghr alignment found: /projects/compbio/experiments/models.97/pdb/1g/1ghr/nostruct-align/1ghr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1ghr/nostruct-align/1ghr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1ghr/nostruct-align/1ghr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-240/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.546387 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gks id: 1gks alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gks/nostruct-align/1gks.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gks/nostruct-align/1gks.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gks/nostruct-align/1gks.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31602/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.517334 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gky id: 1gky alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gky/nostruct-align/1gky.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gky/nostruct-align/1gky.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gky/nostruct-align/1gky.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26439/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.182373 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1glaF id: 1glaF alignment found: /projects/compbio/experiments/models.97/pdb/1g/1glaF/nostruct-align/1glaF.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1glaF/nostruct-align/1glaF.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1glaF/nostruct-align/1glaF.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12133/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.421387 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1glaG_1 id: 1glaG_1 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1glaG_1/nostruct-align/1glaG_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1glaG_1/nostruct-align/1glaG_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1glaG_1/nostruct-align/1glaG_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32256/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.246399 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1glaG_2 id: 1glaG_2 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1glaG_2/nostruct-align/1glaG_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1glaG_2/nostruct-align/1glaG_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1glaG_2/nostruct-align/1glaG_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14260/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.631409 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1glcG id: 1glcG alignment found: /projects/compbio/experiments/models.97/pdb/1g/1glcG/nostruct-align/1glcG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1glcG/nostruct-align/1glcG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1glcG/nostruct-align/1glcG.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18180/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.451416 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1glm id: 1glm alignment found: /projects/compbio/experiments/models.97/pdb/1g/1glm/nostruct-align/1glm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1glm/nostruct-align/1glm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1glm/nostruct-align/1glm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9925/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.939331 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gln id: 1gln alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gln/nostruct-align/1gln.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gln/nostruct-align/1gln.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gln/nostruct-align/1gln.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28155/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -73.036377 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gln_1 id: 1gln_1 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gln_1/nostruct-align/1gln_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gln_1/nostruct-align/1gln_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gln_1/nostruct-align/1gln_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-364/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.121460 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gln_2 id: 1gln_2 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gln_2/nostruct-align/1gln_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gln_2/nostruct-align/1gln_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gln_2/nostruct-align/1gln_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25511/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.147339 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1glqA_1 id: 1glqA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1glqA_1/nostruct-align/1glqA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1glqA_1/nostruct-align/1glqA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1glqA_1/nostruct-align/1glqA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11796/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.038330 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1glqA_2 id: 1glqA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1glqA_2/nostruct-align/1glqA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1glqA_2/nostruct-align/1glqA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1glqA_2/nostruct-align/1glqA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27608/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.979492 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gmpA id: 1gmpA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gmpA/nostruct-align/1gmpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gmpA/nostruct-align/1gmpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gmpA/nostruct-align/1gmpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10632/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.539307 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gnd id: 1gnd alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gnd/nostruct-align/1gnd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gnd/nostruct-align/1gnd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gnd/nostruct-align/1gnd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17375/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.233337 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gnhA id: 1gnhA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gnhA/nostruct-align/1gnhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gnhA/nostruct-align/1gnhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gnhA/nostruct-align/1gnhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6044/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.673462 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gnwA id: 1gnwA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gnwA/nostruct-align/1gnwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gnwA/nostruct-align/1gnwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gnwA/nostruct-align/1gnwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9011/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.279297 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gof id: 1gof alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gof/nostruct-align/1gof.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gof/nostruct-align/1gof.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gof/nostruct-align/1gof.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24329/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.354370 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gof_1 id: 1gof_1 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gof_1/nostruct-align/1gof_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gof_1/nostruct-align/1gof_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gof_1/nostruct-align/1gof_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-440/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.598389 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gof_2 id: 1gof_2 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gof_2/nostruct-align/1gof_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gof_2/nostruct-align/1gof_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gof_2/nostruct-align/1gof_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18859/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.729370 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gof_3 id: 1gof_3 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gof_3/nostruct-align/1gof_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gof_3/nostruct-align/1gof_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gof_3/nostruct-align/1gof_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12549/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.816406 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1goh id: 1goh alignment found: /projects/compbio/experiments/models.97/pdb/1g/1goh/nostruct-align/1goh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1goh/nostruct-align/1goh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1goh/nostruct-align/1goh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13905/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.167358 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gotB id: 1gotB alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gotB/nostruct-align/1gotB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gotB/nostruct-align/1gotB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gotB/nostruct-align/1gotB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14355/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.713379 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gox id: 1gox alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gox/nostruct-align/1gox.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gox/nostruct-align/1gox.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gox/nostruct-align/1gox.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28156/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.310364 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gp1A id: 1gp1A alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gp1A/nostruct-align/1gp1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gp1A/nostruct-align/1gp1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gp1A/nostruct-align/1gp1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6718/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.827515 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gpb id: 1gpb alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gpb/nostruct-align/1gpb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gpb/nostruct-align/1gpb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gpb/nostruct-align/1gpb.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16823/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.027344 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gpc id: 1gpc alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gpc/nostruct-align/1gpc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gpc/nostruct-align/1gpc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gpc/nostruct-align/1gpc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12060/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.995483 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gpeA id: 1gpeA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gpeA/nostruct-align/1gpeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gpeA/nostruct-align/1gpeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gpeA/nostruct-align/1gpeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31835/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.355347 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gph1_1 id: 1gph1_1 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gph1_1/nostruct-align/1gph1_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gph1_1/nostruct-align/1gph1_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gph1_1/nostruct-align/1gph1_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1802/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.976318 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gph1_2 id: 1gph1_2 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gph1_2/nostruct-align/1gph1_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gph1_2/nostruct-align/1gph1_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gph1_2/nostruct-align/1gph1_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4264/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.556396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gpl id: 1gpl alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gpl/nostruct-align/1gpl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gpl/nostruct-align/1gpl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gpl/nostruct-align/1gpl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25692/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.427429 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gpmA id: 1gpmA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gpmA/nostruct-align/1gpmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gpmA/nostruct-align/1gpmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gpmA/nostruct-align/1gpmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16312/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.518372 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gpmA_1 id: 1gpmA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gpmA_1/nostruct-align/1gpmA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gpmA_1/nostruct-align/1gpmA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gpmA_1/nostruct-align/1gpmA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2657/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.651367 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gpmA_2 id: 1gpmA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gpmA_2/nostruct-align/1gpmA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gpmA_2/nostruct-align/1gpmA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gpmA_2/nostruct-align/1gpmA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13272/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.807495 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gpmA_3 id: 1gpmA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gpmA_3/nostruct-align/1gpmA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gpmA_3/nostruct-align/1gpmA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gpmA_3/nostruct-align/1gpmA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3449/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.751404 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gpr id: 1gpr alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gpr/nostruct-align/1gpr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gpr/nostruct-align/1gpr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gpr/nostruct-align/1gpr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12938/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.160339 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gps id: 1gps alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gps/nostruct-align/1gps.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gps/nostruct-align/1gps.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gps/nostruct-align/1gps.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6088/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.810425 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gpt id: 1gpt alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gpt/nostruct-align/1gpt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gpt/nostruct-align/1gpt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gpt/nostruct-align/1gpt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10320/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.809387 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gr2A id: 1gr2A alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gr2A/nostruct-align/1gr2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gr2A/nostruct-align/1gr2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gr2A/nostruct-align/1gr2A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30520/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.032471 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1griA id: 1griA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1griA/nostruct-align/1griA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1griA/nostruct-align/1griA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1griA/nostruct-align/1griA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18518/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.750488 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1grj id: 1grj alignment found: /projects/compbio/experiments/models.97/pdb/1g/1grj/nostruct-align/1grj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1grj/nostruct-align/1grj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1grj/nostruct-align/1grj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26484/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.118347 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1grj_1 id: 1grj_1 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1grj_1/nostruct-align/1grj_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1grj_1/nostruct-align/1grj_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1grj_1/nostruct-align/1grj_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2461/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.797363 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1grj_2 id: 1grj_2 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1grj_2/nostruct-align/1grj_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1grj_2/nostruct-align/1grj_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1grj_2/nostruct-align/1grj_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14357/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.476440 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1grl_1 id: 1grl_1 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1grl_1/nostruct-align/1grl_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1grl_1/nostruct-align/1grl_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1grl_1/nostruct-align/1grl_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26923/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.770386 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1grl_2 id: 1grl_2 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1grl_2/nostruct-align/1grl_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1grl_2/nostruct-align/1grl_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1grl_2/nostruct-align/1grl_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11573/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.681458 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1grl_3 id: 1grl_3 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1grl_3/nostruct-align/1grl_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1grl_3/nostruct-align/1grl_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1grl_3/nostruct-align/1grl_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2857/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.439392 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1grx id: 1grx alignment found: /projects/compbio/experiments/models.97/pdb/1g/1grx/nostruct-align/1grx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1grx/nostruct-align/1grx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1grx/nostruct-align/1grx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23762/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.222412 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gsa id: 1gsa alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gsa/nostruct-align/1gsa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gsa/nostruct-align/1gsa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gsa/nostruct-align/1gsa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5633/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.846436 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gseA id: 1gseA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gseA/nostruct-align/1gseA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gseA/nostruct-align/1gseA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gseA/nostruct-align/1gseA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9225/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.387451 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gseA_1 id: 1gseA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gseA_1/nostruct-align/1gseA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gseA_1/nostruct-align/1gseA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gseA_1/nostruct-align/1gseA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20277/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.962402 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gseA_2 id: 1gseA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gseA_2/nostruct-align/1gseA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gseA_2/nostruct-align/1gseA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gseA_2/nostruct-align/1gseA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17621/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.226440 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gsoA id: 1gsoA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gsoA/nostruct-align/1gsoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gsoA/nostruct-align/1gsoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gsoA/nostruct-align/1gsoA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23549/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.469421 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gtqA id: 1gtqA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gtqA/nostruct-align/1gtqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gtqA/nostruct-align/1gtqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gtqA/nostruct-align/1gtqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18328/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.142456 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gtrA id: 1gtrA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gtrA/nostruct-align/1gtrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gtrA/nostruct-align/1gtrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gtrA/nostruct-align/1gtrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4526/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.484375 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gtrA_1 id: 1gtrA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gtrA_1/nostruct-align/1gtrA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gtrA_1/nostruct-align/1gtrA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gtrA_1/nostruct-align/1gtrA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16105/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.236328 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gtrA_2 id: 1gtrA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gtrA_2/nostruct-align/1gtrA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gtrA_2/nostruct-align/1gtrA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gtrA_2/nostruct-align/1gtrA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21484/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.675415 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gtxA id: 1gtxA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gtxA/nostruct-align/1gtxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gtxA/nostruct-align/1gtxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gtxA/nostruct-align/1gtxA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21333/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.643372 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gumA id: 1gumA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gumA/nostruct-align/1gumA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gumA/nostruct-align/1gumA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gumA/nostruct-align/1gumA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-31324/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.352417 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1guqA id: 1guqA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1guqA/nostruct-align/1guqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1guqA/nostruct-align/1guqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1guqA/nostruct-align/1guqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10530/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.128418 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1guxA id: 1guxA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1guxA/nostruct-align/1guxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1guxA/nostruct-align/1guxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1guxA/nostruct-align/1guxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14448/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.154419 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1guxB id: 1guxB alignment found: /projects/compbio/experiments/models.97/pdb/1g/1guxB/nostruct-align/1guxB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1guxB/nostruct-align/1guxB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1guxB/nostruct-align/1guxB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7552/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.614502 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gvp id: 1gvp alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gvp/nostruct-align/1gvp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gvp/nostruct-align/1gvp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gvp/nostruct-align/1gvp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8180/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.726318 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gw4 id: 1gw4 alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gw4/nostruct-align/1gw4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gw4/nostruct-align/1gw4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gw4/nostruct-align/1gw4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31013/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.598389 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gya id: 1gya alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gya/nostruct-align/1gya.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gya/nostruct-align/1gya.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gya/nostruct-align/1gya.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8589/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.653442 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gyfA id: 1gyfA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gyfA/nostruct-align/1gyfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gyfA/nostruct-align/1gyfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gyfA/nostruct-align/1gyfA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15273/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.123413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gylA id: 1gylA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gylA/nostruct-align/1gylA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gylA/nostruct-align/1gylA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gylA/nostruct-align/1gylA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18024/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.562439 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1gypA id: 1gypA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gypA/nostruct-align/1gypA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gypA/nostruct-align/1gypA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gypA/nostruct-align/1gypA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21552/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.995361 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1h2aS id: 1h2aS alignment found: /projects/compbio/experiments/models.97/pdb/1h/1h2aS/nostruct-align/1h2aS.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1h2aS/nostruct-align/1h2aS.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1h2aS/nostruct-align/1h2aS.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8370/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.387390 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1h2rL id: 1h2rL alignment found: /projects/compbio/experiments/models.97/pdb/1h/1h2rL/nostruct-align/1h2rL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1h2rL/nostruct-align/1h2rL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1h2rL/nostruct-align/1h2rL.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2258/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.620422 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ha1 id: 1ha1 alignment found: /projects/compbio/experiments/models.97/pdb/1h/1ha1/nostruct-align/1ha1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1ha1/nostruct-align/1ha1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1ha1/nostruct-align/1ha1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29125/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.034424 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1han id: 1han alignment found: /projects/compbio/experiments/models.97/pdb/1h/1han/nostruct-align/1han.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1han/nostruct-align/1han.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1han/nostruct-align/1han.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2009/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.501343 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1han_1 id: 1han_1 alignment found: /projects/compbio4/experiments/models.97/domains/1h/1han_1/nostruct-align/1han_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1han_1/nostruct-align/1han_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1h/1han_1/nostruct-align/1han_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16036/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.099487 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1han_2 id: 1han_2 alignment found: /projects/compbio4/experiments/models.97/domains/1h/1han_2/nostruct-align/1han_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1han_2/nostruct-align/1han_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1h/1han_2/nostruct-align/1han_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7225/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.132324 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1har id: 1har alignment found: /projects/compbio/experiments/models.97/pdb/1h/1har/nostruct-align/1har.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1har/nostruct-align/1har.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1har/nostruct-align/1har.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20542/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.956299 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1havA id: 1havA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1havA/nostruct-align/1havA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1havA/nostruct-align/1havA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1havA/nostruct-align/1havA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7700/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.833435 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hbg id: 1hbg alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hbg/nostruct-align/1hbg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hbg/nostruct-align/1hbg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hbg/nostruct-align/1hbg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26954/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.095337 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hbp id: 1hbp alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hbp/nostruct-align/1hbp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hbp/nostruct-align/1hbp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hbp/nostruct-align/1hbp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18611/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.436401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hbq id: 1hbq alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hbq/nostruct-align/1hbq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hbq/nostruct-align/1hbq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hbq/nostruct-align/1hbq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9203/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.311401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hbt_1l1 id: 1hbt_1l1 alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hbt_1l1/nostruct-align/1hbt_1l1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hbt_1l1/nostruct-align/1hbt_1l1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1h/1hbt_1l1/nostruct-align/1hbt_1l1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3002/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.213501 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hc2_1 id: 1hc2_1 alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hc2_1/nostruct-align/1hc2_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hc2_1/nostruct-align/1hc2_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1h/1hc2_1/nostruct-align/1hc2_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22076/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.888428 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hc2_2 id: 1hc2_2 alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hc2_2/nostruct-align/1hc2_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hc2_2/nostruct-align/1hc2_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1h/1hc2_2/nostruct-align/1hc2_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19876/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.441406 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hcb id: 1hcb alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hcb/nostruct-align/1hcb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hcb/nostruct-align/1hcb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hcb/nostruct-align/1hcb.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12384/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.115356 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hcc id: 1hcc alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hcc/nostruct-align/1hcc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hcc/nostruct-align/1hcc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hcc/nostruct-align/1hcc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26057/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.809448 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hcd id: 1hcd alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hcd/nostruct-align/1hcd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hcd/nostruct-align/1hcd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hcd/nostruct-align/1hcd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-590/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.335449 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hce id: 1hce alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hce/nostruct-align/1hce.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hce/nostruct-align/1hce.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hce/nostruct-align/1hce.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6071/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.335449 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hcgB id: 1hcgB alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hcgB/nostruct-align/1hcgB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hcgB/nostruct-align/1hcgB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hcgB/nostruct-align/1hcgB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13189/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.476440 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hcl id: 1hcl alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hcl/nostruct-align/1hcl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hcl/nostruct-align/1hcl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hcl/nostruct-align/1hcl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2658/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.959351 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hcnA id: 1hcnA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hcnA/nostruct-align/1hcnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hcnA/nostruct-align/1hcnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hcnA/nostruct-align/1hcnA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9647/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.970398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hcnB id: 1hcnB alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hcnB/nostruct-align/1hcnB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hcnB/nostruct-align/1hcnB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hcnB/nostruct-align/1hcnB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8311/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.275391 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hcqA id: 1hcqA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hcqA/nostruct-align/1hcqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hcqA/nostruct-align/1hcqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hcqA/nostruct-align/1hcqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8167/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.362427 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hcrA id: 1hcrA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hcrA/nostruct-align/1hcrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hcrA/nostruct-align/1hcrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hcrA/nostruct-align/1hcrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16334/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.422363 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hcz id: 1hcz alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hcz/nostruct-align/1hcz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hcz/nostruct-align/1hcz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hcz/nostruct-align/1hcz.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27179/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.240479 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hdcA id: 1hdcA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hdcA/nostruct-align/1hdcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hdcA/nostruct-align/1hdcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hdcA/nostruct-align/1hdcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31069/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -21.828369 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hdmB id: 1hdmB alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hdmB/nostruct-align/1hdmB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hdmB/nostruct-align/1hdmB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hdmB/nostruct-align/1hdmB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27316/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.100342 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hdp id: 1hdp alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hdp/nostruct-align/1hdp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hdp/nostruct-align/1hdp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hdp/nostruct-align/1hdp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21713/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.599487 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1heiA id: 1heiA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1heiA/nostruct-align/1heiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1heiA/nostruct-align/1heiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1heiA/nostruct-align/1heiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24996/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.037354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hev id: 1hev alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hev/nostruct-align/1hev.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hev/nostruct-align/1hev.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hev/nostruct-align/1hev.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21376/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.282471 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hfc id: 1hfc alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hfc/nostruct-align/1hfc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hfc/nostruct-align/1hfc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hfc/nostruct-align/1hfc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20040/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.745361 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hfeL id: 1hfeL alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hfeL/nostruct-align/1hfeL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hfeL/nostruct-align/1hfeL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hfeL/nostruct-align/1hfeL.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30871/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.886414 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hfeS id: 1hfeS alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hfeS/nostruct-align/1hfeS.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hfeS/nostruct-align/1hfeS.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hfeS/nostruct-align/1hfeS.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11502/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.538330 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hfh id: 1hfh alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hfh/nostruct-align/1hfh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hfh/nostruct-align/1hfh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hfh/nostruct-align/1hfh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25967/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.697510 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hfi id: 1hfi alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hfi/nostruct-align/1hfi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hfi/nostruct-align/1hfi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hfi/nostruct-align/1hfi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20636/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.849365 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hgeA id: 1hgeA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hgeA/nostruct-align/1hgeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hgeA/nostruct-align/1hgeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hgeA/nostruct-align/1hgeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8035/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.103394 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hgeB id: 1hgeB alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hgeB/nostruct-align/1hgeB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hgeB/nostruct-align/1hgeB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hgeB/nostruct-align/1hgeB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-931/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.300354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hgxA id: 1hgxA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hgxA/nostruct-align/1hgxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hgxA/nostruct-align/1hgxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hgxA/nostruct-align/1hgxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15926/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.944458 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hilB id: 1hilB alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hilB/nostruct-align/1hilB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hilB/nostruct-align/1hilB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hilB/nostruct-align/1hilB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11153/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.057373 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hiwA id: 1hiwA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hiwA/nostruct-align/1hiwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hiwA/nostruct-align/1hiwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hiwA/nostruct-align/1hiwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25684/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.587402 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hjp id: 1hjp alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hjp/nostruct-align/1hjp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hjp/nostruct-align/1hjp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hjp/nostruct-align/1hjp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19638/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.449402 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hjrA id: 1hjrA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hjrA/nostruct-align/1hjrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hjrA/nostruct-align/1hjrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hjrA/nostruct-align/1hjrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4320/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.446350 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hka id: 1hka alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hka/nostruct-align/1hka.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hka/nostruct-align/1hka.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hka/nostruct-align/1hka.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8146/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.283447 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hkbA id: 1hkbA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hkbA/nostruct-align/1hkbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hkbA/nostruct-align/1hkbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hkbA/nostruct-align/1hkbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19937/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.460388 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hkcA id: 1hkcA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hkcA/nostruct-align/1hkcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hkcA/nostruct-align/1hkcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hkcA/nostruct-align/1hkcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13968/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.295410 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hlb id: 1hlb alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hlb/nostruct-align/1hlb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hlb/nostruct-align/1hlb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hlb/nostruct-align/1hlb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29046/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.794434 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hleA id: 1hleA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hleA/nostruct-align/1hleA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hleA/nostruct-align/1hleA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hleA/nostruct-align/1hleA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27919/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.907349 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hleB id: 1hleB alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hleB/nostruct-align/1hleB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hleB/nostruct-align/1hleB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hleB/nostruct-align/1hleB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8478/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.517334 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hle_1a1 id: 1hle_1a1 alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hle_1a1/nostruct-align/1hle_1a1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hle_1a1/nostruct-align/1hle_1a1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1h/1hle_1a1/nostruct-align/1hle_1a1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19494/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.082397 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hlgA id: 1hlgA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hlgA/nostruct-align/1hlgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hlgA/nostruct-align/1hlgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hlgA/nostruct-align/1hlgA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2225/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.708374 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hlpA_1 id: 1hlpA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hlpA_1/nostruct-align/1hlpA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hlpA_1/nostruct-align/1hlpA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1h/1hlpA_1/nostruct-align/1hlpA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3396/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.021423 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hlpA_2 id: 1hlpA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hlpA_2/nostruct-align/1hlpA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hlpA_2/nostruct-align/1hlpA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1h/1hlpA_2/nostruct-align/1hlpA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14855/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.730347 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hma id: 1hma alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hma/nostruct-align/1hma.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hma/nostruct-align/1hma.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hma/nostruct-align/1hma.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13804/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.647461 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hmcA id: 1hmcA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hmcA/nostruct-align/1hmcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hmcA/nostruct-align/1hmcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hmcA/nostruct-align/1hmcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5553/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.608398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hmcB id: 1hmcB alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hmcB/nostruct-align/1hmcB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hmcB/nostruct-align/1hmcB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hmcB/nostruct-align/1hmcB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15638/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.609436 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hml id: 1hml alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hml/nostruct-align/1hml.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hml/nostruct-align/1hml.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hml/nostruct-align/1hml.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15767/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.323364 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hmpA id: 1hmpA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hmpA/nostruct-align/1hmpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hmpA/nostruct-align/1hmpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hmpA/nostruct-align/1hmpA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-24360/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.607483 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hms id: 1hms alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hms/nostruct-align/1hms.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hms/nostruct-align/1hms.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hms/nostruct-align/1hms.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-27231/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.767456 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hmt id: 1hmt alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hmt/nostruct-align/1hmt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hmt/nostruct-align/1hmt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hmt/nostruct-align/1hmt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18799/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.912354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hmy id: 1hmy alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hmy/nostruct-align/1hmy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hmy/nostruct-align/1hmy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hmy/nostruct-align/1hmy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21224/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.556396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hnf id: 1hnf alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hnf/nostruct-align/1hnf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hnf/nostruct-align/1hnf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hnf/nostruct-align/1hnf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12961/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.257446 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hnr id: 1hnr alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hnr/nostruct-align/1hnr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hnr/nostruct-align/1hnr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hnr/nostruct-align/1hnr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11144/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.314453 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hoe id: 1hoe alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hoe/nostruct-align/1hoe.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hoe/nostruct-align/1hoe.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hoe/nostruct-align/1hoe.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25128/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.301453 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hp8 id: 1hp8 alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hp8/nostruct-align/1hp8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hp8/nostruct-align/1hp8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hp8/nostruct-align/1hp8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3435/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.821472 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hpgA id: 1hpgA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hpgA/nostruct-align/1hpgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hpgA/nostruct-align/1hpgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hpgA/nostruct-align/1hpgA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22252/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.335449 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hph id: 1hph alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hph/nostruct-align/1hph.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hph/nostruct-align/1hph.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hph/nostruct-align/1hph.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-117/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.401367 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hpi id: 1hpi alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hpi/nostruct-align/1hpi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hpi/nostruct-align/1hpi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hpi/nostruct-align/1hpi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15477/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.768433 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hplA_1 id: 1hplA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hplA_1/nostruct-align/1hplA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hplA_1/nostruct-align/1hplA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1h/1hplA_1/nostruct-align/1hplA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3888/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.232361 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hplA_2 id: 1hplA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hplA_2/nostruct-align/1hplA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hplA_2/nostruct-align/1hplA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1h/1hplA_2/nostruct-align/1hplA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26546/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.895447 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hpm_1 id: 1hpm_1 alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hpm_1/nostruct-align/1hpm_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hpm_1/nostruct-align/1hpm_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1h/1hpm_1/nostruct-align/1hpm_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17095/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.135376 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hpm_2 id: 1hpm_2 alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hpm_2/nostruct-align/1hpm_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hpm_2/nostruct-align/1hpm_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1h/1hpm_2/nostruct-align/1hpm_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26980/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.158325 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hpy id: 1hpy alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hpy/nostruct-align/1hpy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hpy/nostruct-align/1hpy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hpy/nostruct-align/1hpy.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29177/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.349487 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hqi id: 1hqi alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hqi/nostruct-align/1hqi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hqi/nostruct-align/1hqi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hqi/nostruct-align/1hqi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10878/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.320435 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hra id: 1hra alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hra/nostruct-align/1hra.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hra/nostruct-align/1hra.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hra/nostruct-align/1hra.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17422/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.668335 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hrdA id: 1hrdA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hrdA/nostruct-align/1hrdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hrdA/nostruct-align/1hrdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hrdA/nostruct-align/1hrdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32199/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -23.410339 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hre id: 1hre alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hre/nostruct-align/1hre.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hre/nostruct-align/1hre.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hre/nostruct-align/1hre.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19034/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.693359 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hrq id: 1hrq alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hrq/nostruct-align/1hrq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hrq/nostruct-align/1hrq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hrq/nostruct-align/1hrq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28909/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.667358 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hryA id: 1hryA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hryA/nostruct-align/1hryA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hryA/nostruct-align/1hryA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hryA/nostruct-align/1hryA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29580/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.183472 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hrzA id: 1hrzA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hrzA/nostruct-align/1hrzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hrzA/nostruct-align/1hrzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hrzA/nostruct-align/1hrzA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18804/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.515381 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hsbA id: 1hsbA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hsbA/nostruct-align/1hsbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hsbA/nostruct-align/1hsbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hsbA/nostruct-align/1hsbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27912/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.181396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hsm id: 1hsm alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hsm/nostruct-align/1hsm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hsm/nostruct-align/1hsm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hsm/nostruct-align/1hsm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18768/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.715454 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hsq id: 1hsq alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hsq/nostruct-align/1hsq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hsq/nostruct-align/1hsq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hsq/nostruct-align/1hsq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28460/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.622314 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hssA id: 1hssA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hssA/nostruct-align/1hssA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hssA/nostruct-align/1hssA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hssA/nostruct-align/1hssA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10881/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.414429 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hstA id: 1hstA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hstA/nostruct-align/1hstA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hstA/nostruct-align/1hstA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hstA/nostruct-align/1hstA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32411/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.737427 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hta id: 1hta alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hta/nostruct-align/1hta.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hta/nostruct-align/1hta.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hta/nostruct-align/1hta.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21404/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.929443 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hth id: 1hth alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hth/nostruct-align/1hth.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hth/nostruct-align/1hth.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hth/nostruct-align/1hth.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23013/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.455444 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1htmB id: 1htmB alignment found: /projects/compbio/experiments/models.97/pdb/1h/1htmB/nostruct-align/1htmB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1htmB/nostruct-align/1htmB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1htmB/nostruct-align/1htmB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23752/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.658447 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1htn id: 1htn alignment found: /projects/compbio/experiments/models.97/pdb/1h/1htn/nostruct-align/1htn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1htn/nostruct-align/1htn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1htn/nostruct-align/1htn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22147/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.301392 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1htp id: 1htp alignment found: /projects/compbio/experiments/models.97/pdb/1h/1htp/nostruct-align/1htp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1htp/nostruct-align/1htp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1htp/nostruct-align/1htp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30090/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.695435 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1htrB id: 1htrB alignment found: /projects/compbio/experiments/models.97/pdb/1h/1htrB/nostruct-align/1htrB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1htrB/nostruct-align/1htrB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1htrB/nostruct-align/1htrB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25271/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.714478 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1htrP id: 1htrP alignment found: /projects/compbio/experiments/models.97/pdb/1h/1htrP/nostruct-align/1htrP.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1htrP/nostruct-align/1htrP.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1htrP/nostruct-align/1htrP.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23664/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.895386 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1htr_1p1 id: 1htr_1p1 alignment found: /projects/compbio4/experiments/models.97/domains/1h/1htr_1p1/nostruct-align/1htr_1p1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1htr_1p1/nostruct-align/1htr_1p1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1h/1htr_1p1/nostruct-align/1htr_1p1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19787/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.299377 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hucA id: 1hucA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hucA/nostruct-align/1hucA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hucA/nostruct-align/1hucA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hucA/nostruct-align/1hucA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6118/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.813354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hueA id: 1hueA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hueA/nostruct-align/1hueA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hueA/nostruct-align/1hueA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hueA/nostruct-align/1hueA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20035/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.464355 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hulA id: 1hulA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hulA/nostruct-align/1hulA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hulA/nostruct-align/1hulA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hulA/nostruct-align/1hulA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-282/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.258423 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1humA id: 1humA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1humA/nostruct-align/1humA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1humA/nostruct-align/1humA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1humA/nostruct-align/1humA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14391/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.590393 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hurA id: 1hurA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hurA/nostruct-align/1hurA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hurA/nostruct-align/1hurA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hurA/nostruct-align/1hurA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20682/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.459351 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1huuA id: 1huuA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1huuA/nostruct-align/1huuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1huuA/nostruct-align/1huuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1huuA/nostruct-align/1huuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3588/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.929321 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1huw id: 1huw alignment found: /projects/compbio/experiments/models.97/pdb/1h/1huw/nostruct-align/1huw.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1huw/nostruct-align/1huw.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1huw/nostruct-align/1huw.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28339/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.031372 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hvc id: 1hvc alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hvc/nostruct-align/1hvc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hvc/nostruct-align/1hvc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hvc/nostruct-align/1hvc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30998/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.643372 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hvd id: 1hvd alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hvd/nostruct-align/1hvd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hvd/nostruct-align/1hvd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hvd/nostruct-align/1hvd.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-27124/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.681396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hwtC id: 1hwtC alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hwtC/nostruct-align/1hwtC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hwtC/nostruct-align/1hwtC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hwtC/nostruct-align/1hwtC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15366/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.648438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hxn id: 1hxn alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hxn/nostruct-align/1hxn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hxn/nostruct-align/1hxn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hxn/nostruct-align/1hxn.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23394/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.839355 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hyhA id: 1hyhA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hyhA/nostruct-align/1hyhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hyhA/nostruct-align/1hyhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hyhA/nostruct-align/1hyhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26002/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.995361 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hyhA_1 id: 1hyhA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hyhA_1/nostruct-align/1hyhA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hyhA_1/nostruct-align/1hyhA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1h/1hyhA_1/nostruct-align/1hyhA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24142/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.158325 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hyhA_2 id: 1hyhA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hyhA_2/nostruct-align/1hyhA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hyhA_2/nostruct-align/1hyhA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1h/1hyhA_2/nostruct-align/1hyhA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6857/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.463440 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hylA id: 1hylA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hylA/nostruct-align/1hylA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hylA/nostruct-align/1hylA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hylA/nostruct-align/1hylA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-10790/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.428345 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hymA id: 1hymA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hymA/nostruct-align/1hymA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hymA/nostruct-align/1hymA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hymA/nostruct-align/1hymA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26850/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.062378 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hyp id: 1hyp alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hyp/nostruct-align/1hyp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hyp/nostruct-align/1hyp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hyp/nostruct-align/1hyp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21020/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.506470 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1hyt id: 1hyt alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hyt/nostruct-align/1hyt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hyt/nostruct-align/1hyt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hyt/nostruct-align/1hyt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5975/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.263428 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1i16 id: 1i16 alignment found: /projects/compbio/experiments/models.97/pdb/1i/1i16/nostruct-align/1i16.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1i16/nostruct-align/1i16.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1i16/nostruct-align/1i16.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23163/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.098389 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1i1b id: 1i1b alignment found: /projects/compbio/experiments/models.97/pdb/1i/1i1b/nostruct-align/1i1b.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1i1b/nostruct-align/1i1b.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1i1b/nostruct-align/1i1b.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-21163/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.505493 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1iab id: 1iab alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iab/nostruct-align/1iab.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iab/nostruct-align/1iab.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iab/nostruct-align/1iab.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32374/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.815430 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1iae id: 1iae alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iae/nostruct-align/1iae.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iae/nostruct-align/1iae.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iae/nostruct-align/1iae.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27168/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.741455 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1iakA id: 1iakA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iakA/nostruct-align/1iakA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iakA/nostruct-align/1iakA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iakA/nostruct-align/1iakA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29981/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.922485 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1iakB id: 1iakB alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iakB/nostruct-align/1iakB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iakB/nostruct-align/1iakB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iakB/nostruct-align/1iakB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11742/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.764404 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1iarB id: 1iarB alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iarB/nostruct-align/1iarB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iarB/nostruct-align/1iarB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iarB/nostruct-align/1iarB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15552/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.937500 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1iba id: 1iba alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iba/nostruct-align/1iba.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iba/nostruct-align/1iba.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iba/nostruct-align/1iba.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25897/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.147461 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ibcA id: 1ibcA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ibcA/nostruct-align/1ibcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ibcA/nostruct-align/1ibcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ibcA/nostruct-align/1ibcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19850/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.091492 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ibcB id: 1ibcB alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ibcB/nostruct-align/1ibcB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ibcB/nostruct-align/1ibcB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ibcB/nostruct-align/1ibcB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31654/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.241333 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ica id: 1ica alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ica/nostruct-align/1ica.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ica/nostruct-align/1ica.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ica/nostruct-align/1ica.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30338/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.160400 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ice_1a1 id: 1ice_1a1 alignment found: /projects/compbio4/experiments/models.97/domains/1i/1ice_1a1/nostruct-align/1ice_1a1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1i/1ice_1a1/nostruct-align/1ice_1a1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1i/1ice_1a1/nostruct-align/1ice_1a1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26797/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.031433 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1icfB id: 1icfB alignment found: /projects/compbio/experiments/models.97/pdb/1i/1icfB/nostruct-align/1icfB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1icfB/nostruct-align/1icfB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1icfB/nostruct-align/1icfB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7112/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.049316 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1icfI id: 1icfI alignment found: /projects/compbio/experiments/models.97/pdb/1i/1icfI/nostruct-align/1icfI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1icfI/nostruct-align/1icfI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1icfI/nostruct-align/1icfI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32329/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.902466 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1icjA id: 1icjA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1icjA/nostruct-align/1icjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1icjA/nostruct-align/1icjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1icjA/nostruct-align/1icjA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2605/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.977417 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1idaA id: 1idaA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1idaA/nostruct-align/1idaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1idaA/nostruct-align/1idaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1idaA/nostruct-align/1idaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28757/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.737427 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1idk id: 1idk alignment found: /projects/compbio/experiments/models.97/pdb/1i/1idk/nostruct-align/1idk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1idk/nostruct-align/1idk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1idk/nostruct-align/1idk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3581/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.698364 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1idm id: 1idm alignment found: /projects/compbio/experiments/models.97/pdb/1i/1idm/nostruct-align/1idm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1idm/nostruct-align/1idm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1idm/nostruct-align/1idm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5960/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.360352 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ido id: 1ido alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ido/nostruct-align/1ido.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ido/nostruct-align/1ido.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ido/nostruct-align/1ido.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15644/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.266357 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ieaA id: 1ieaA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ieaA/nostruct-align/1ieaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ieaA/nostruct-align/1ieaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ieaA/nostruct-align/1ieaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-728/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.800415 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1if1A id: 1if1A alignment found: /projects/compbio/experiments/models.97/pdb/1i/1if1A/nostruct-align/1if1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1if1A/nostruct-align/1if1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1if1A/nostruct-align/1if1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-293/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.675415 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ifa id: 1ifa alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ifa/nostruct-align/1ifa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ifa/nostruct-align/1ifa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ifa/nostruct-align/1ifa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31257/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.952393 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ifc id: 1ifc alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ifc/nostruct-align/1ifc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ifc/nostruct-align/1ifc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ifc/nostruct-align/1ifc.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10482/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.553467 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ifi id: 1ifi alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ifi/nostruct-align/1ifi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ifi/nostruct-align/1ifi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ifi/nostruct-align/1ifi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25737/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.154419 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ifj id: 1ifj alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ifj/nostruct-align/1ifj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ifj/nostruct-align/1ifj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ifj/nostruct-align/1ifj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21992/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.154419 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ifl id: 1ifl alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ifl/nostruct-align/1ifl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ifl/nostruct-align/1ifl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ifl/nostruct-align/1ifl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27727/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.049377 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ifm id: 1ifm alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ifm/nostruct-align/1ifm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ifm/nostruct-align/1ifm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ifm/nostruct-align/1ifm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26854/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.182434 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ifp id: 1ifp alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ifp/nostruct-align/1ifp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ifp/nostruct-align/1ifp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ifp/nostruct-align/1ifp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28853/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.619385 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1igd id: 1igd alignment found: /projects/compbio/experiments/models.97/pdb/1i/1igd/nostruct-align/1igd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1igd/nostruct-align/1igd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1igd/nostruct-align/1igd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6389/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.672485 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1igl id: 1igl alignment found: /projects/compbio/experiments/models.97/pdb/1i/1igl/nostruct-align/1igl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1igl/nostruct-align/1igl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1igl/nostruct-align/1igl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28748/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.755432 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ignA id: 1ignA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ignA/nostruct-align/1ignA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ignA/nostruct-align/1ignA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ignA/nostruct-align/1ignA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18172/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.419434 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1igrA id: 1igrA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1igrA/nostruct-align/1igrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1igrA/nostruct-align/1igrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1igrA/nostruct-align/1igrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27666/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.327393 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1igs id: 1igs alignment found: /projects/compbio/experiments/models.97/pdb/1i/1igs/nostruct-align/1igs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1igs/nostruct-align/1igs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1igs/nostruct-align/1igs.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20208/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.414368 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1igtB id: 1igtB alignment found: /projects/compbio/experiments/models.97/pdb/1i/1igtB/nostruct-align/1igtB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1igtB/nostruct-align/1igtB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1igtB/nostruct-align/1igtB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15275/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.113403 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ihp id: 1ihp alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ihp/nostruct-align/1ihp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ihp/nostruct-align/1ihp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ihp/nostruct-align/1ihp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28899/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.218384 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ihsI id: 1ihsI alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ihsI/nostruct-align/1ihsI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ihsI/nostruct-align/1ihsI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ihsI/nostruct-align/1ihsI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18415/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.526489 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ihvA id: 1ihvA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ihvA/nostruct-align/1ihvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ihvA/nostruct-align/1ihvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ihvA/nostruct-align/1ihvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10945/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.608459 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1iibA id: 1iibA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iibA/nostruct-align/1iibA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iibA/nostruct-align/1iibA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iibA/nostruct-align/1iibA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24109/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.662354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1iieA id: 1iieA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iieA/nostruct-align/1iieA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iieA/nostruct-align/1iieA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iieA/nostruct-align/1iieA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29529/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.138428 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1iknA id: 1iknA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iknA/nostruct-align/1iknA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iknA/nostruct-align/1iknA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iknA/nostruct-align/1iknA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29703/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.272400 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1iknD id: 1iknD alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iknD/nostruct-align/1iknD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iknD/nostruct-align/1iknD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iknD/nostruct-align/1iknD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24833/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.828369 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ile id: 1ile alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ile/nostruct-align/1ile.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ile/nostruct-align/1ile.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ile/nostruct-align/1ile.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10961/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.666382 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ilk id: 1ilk alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ilk/nostruct-align/1ilk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ilk/nostruct-align/1ilk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ilk/nostruct-align/1ilk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10838/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.848389 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ilr1 id: 1ilr1 alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ilr1/nostruct-align/1ilr1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ilr1/nostruct-align/1ilr1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ilr1/nostruct-align/1ilr1.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-27321/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.303467 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1imbA id: 1imbA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1imbA/nostruct-align/1imbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1imbA/nostruct-align/1imbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1imbA/nostruct-align/1imbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17342/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.890442 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1imdA id: 1imdA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1imdA/nostruct-align/1imdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1imdA/nostruct-align/1imdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1imdA/nostruct-align/1imdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20291/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.780396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1iml id: 1iml alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iml/nostruct-align/1iml.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iml/nostruct-align/1iml.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iml/nostruct-align/1iml.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7710/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.821411 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1imt id: 1imt alignment found: /projects/compbio/experiments/models.97/pdb/1i/1imt/nostruct-align/1imt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1imt/nostruct-align/1imt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1imt/nostruct-align/1imt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11017/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.493408 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1inp id: 1inp alignment found: /projects/compbio/experiments/models.97/pdb/1i/1inp/nostruct-align/1inp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1inp/nostruct-align/1inp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1inp/nostruct-align/1inp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23928/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.811401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ioj id: 1ioj alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ioj/nostruct-align/1ioj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ioj/nostruct-align/1ioj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ioj/nostruct-align/1ioj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26822/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.791382 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1iow id: 1iow alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iow/nostruct-align/1iow.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iow/nostruct-align/1iow.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iow/nostruct-align/1iow.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1069/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.713379 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ipd id: 1ipd alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ipd/nostruct-align/1ipd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ipd/nostruct-align/1ipd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ipd/nostruct-align/1ipd.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5292/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.393372 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ipwA id: 1ipwA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ipwA/nostruct-align/1ipwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ipwA/nostruct-align/1ipwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ipwA/nostruct-align/1ipwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19442/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.619385 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ir3A id: 1ir3A alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ir3A/nostruct-align/1ir3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ir3A/nostruct-align/1ir3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ir3A/nostruct-align/1ir3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11760/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.623413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1irk id: 1irk alignment found: /projects/compbio/experiments/models.97/pdb/1i/1irk/nostruct-align/1irk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1irk/nostruct-align/1irk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1irk/nostruct-align/1irk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12935/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.459351 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1irl id: 1irl alignment found: /projects/compbio/experiments/models.97/pdb/1i/1irl/nostruct-align/1irl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1irl/nostruct-align/1irl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1irl/nostruct-align/1irl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26329/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.972412 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1iro id: 1iro alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iro/nostruct-align/1iro.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iro/nostruct-align/1iro.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iro/nostruct-align/1iro.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15358/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.233337 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1irp id: 1irp alignment found: /projects/compbio/experiments/models.97/pdb/1i/1irp/nostruct-align/1irp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1irp/nostruct-align/1irp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1irp/nostruct-align/1irp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11262/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.155396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1irsA id: 1irsA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1irsA/nostruct-align/1irsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1irsA/nostruct-align/1irsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1irsA/nostruct-align/1irsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4280/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.038330 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1iscA id: 1iscA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iscA/nostruct-align/1iscA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iscA/nostruct-align/1iscA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iscA/nostruct-align/1iscA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6755/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.971436 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1iso id: 1iso alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iso/nostruct-align/1iso.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iso/nostruct-align/1iso.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iso/nostruct-align/1iso.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19355/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.775391 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1isuA id: 1isuA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1isuA/nostruct-align/1isuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1isuA/nostruct-align/1isuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1isuA/nostruct-align/1isuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28191/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.008423 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1itbB id: 1itbB alignment found: /projects/compbio/experiments/models.97/pdb/1i/1itbB/nostruct-align/1itbB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1itbB/nostruct-align/1itbB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1itbB/nostruct-align/1itbB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22981/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.922363 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1itf id: 1itf alignment found: /projects/compbio/experiments/models.97/pdb/1i/1itf/nostruct-align/1itf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1itf/nostruct-align/1itf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1itf/nostruct-align/1itf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16900/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.083374 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1itg id: 1itg alignment found: /projects/compbio/experiments/models.97/pdb/1i/1itg/nostruct-align/1itg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1itg/nostruct-align/1itg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1itg/nostruct-align/1itg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21631/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.201416 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ithA id: 1ithA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ithA/nostruct-align/1ithA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ithA/nostruct-align/1ithA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ithA/nostruct-align/1ithA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23119/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.058472 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1itm id: 1itm alignment found: /projects/compbio/experiments/models.97/pdb/1i/1itm/nostruct-align/1itm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1itm/nostruct-align/1itm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1itm/nostruct-align/1itm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1483/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.958374 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1iuz id: 1iuz alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iuz/nostruct-align/1iuz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iuz/nostruct-align/1iuz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iuz/nostruct-align/1iuz.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27141/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.483398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1iva id: 1iva alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iva/nostruct-align/1iva.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iva/nostruct-align/1iva.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iva/nostruct-align/1iva.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/experiments/models.97/pdb/1i/1iva/nostruct-align/1iva.t99.a2m.gz SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.788391 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ivyA id: 1ivyA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ivyA/nostruct-align/1ivyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ivyA/nostruct-align/1ivyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ivyA/nostruct-align/1ivyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29124/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.918396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ixa id: 1ixa alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ixa/nostruct-align/1ixa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ixa/nostruct-align/1ixa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ixa/nostruct-align/1ixa.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30407/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.175476 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ixh id: 1ixh alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ixh/nostruct-align/1ixh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ixh/nostruct-align/1ixh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ixh/nostruct-align/1ixh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30536/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.016479 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ixmA id: 1ixmA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ixmA/nostruct-align/1ixmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ixmA/nostruct-align/1ixmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ixmA/nostruct-align/1ixmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1500/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.739441 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ixmB id: 1ixmB alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ixmB/nostruct-align/1ixmB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ixmB/nostruct-align/1ixmB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ixmB/nostruct-align/1ixmB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29953/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.750366 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ixxB id: 1ixxB alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ixxB/nostruct-align/1ixxB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ixxB/nostruct-align/1ixxB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ixxB/nostruct-align/1ixxB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23149/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.759399 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1iyu id: 1iyu alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iyu/nostruct-align/1iyu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iyu/nostruct-align/1iyu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iyu/nostruct-align/1iyu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20247/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.442383 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1jacA id: 1jacA alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jacA/nostruct-align/1jacA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jacA/nostruct-align/1jacA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jacA/nostruct-align/1jacA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27657/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.422363 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1jcv id: 1jcv alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jcv/nostruct-align/1jcv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jcv/nostruct-align/1jcv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jcv/nostruct-align/1jcv.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30186/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.539368 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1jdc id: 1jdc alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jdc/nostruct-align/1jdc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jdc/nostruct-align/1jdc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jdc/nostruct-align/1jdc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-998/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.977417 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1jdw id: 1jdw alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jdw/nostruct-align/1jdw.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jdw/nostruct-align/1jdw.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jdw/nostruct-align/1jdw.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13085/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.326355 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1jenA id: 1jenA alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jenA/nostruct-align/1jenA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jenA/nostruct-align/1jenA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jenA/nostruct-align/1jenA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17021/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.571411 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1jenB id: 1jenB alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jenB/nostruct-align/1jenB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jenB/nostruct-align/1jenB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jenB/nostruct-align/1jenB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19447/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.985474 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1jer id: 1jer alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jer/nostruct-align/1jer.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jer/nostruct-align/1jer.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jer/nostruct-align/1jer.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9387/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.974487 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1jetA id: 1jetA alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jetA/nostruct-align/1jetA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jetA/nostruct-align/1jetA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jetA/nostruct-align/1jetA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7803/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.950317 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1jevA id: 1jevA alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jevA/nostruct-align/1jevA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jevA/nostruct-align/1jevA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jevA/nostruct-align/1jevA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12877/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.116455 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1jfrA id: 1jfrA alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jfrA/nostruct-align/1jfrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jfrA/nostruct-align/1jfrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jfrA/nostruct-align/1jfrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17579/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.093384 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1jhgA id: 1jhgA alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jhgA/nostruct-align/1jhgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jhgA/nostruct-align/1jhgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jhgA/nostruct-align/1jhgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5117/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.117432 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1jkmA id: 1jkmA alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jkmA/nostruct-align/1jkmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jkmA/nostruct-align/1jkmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jkmA/nostruct-align/1jkmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26657/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.381348 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1jkmB id: 1jkmB alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jkmB/nostruct-align/1jkmB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jkmB/nostruct-align/1jkmB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jkmB/nostruct-align/1jkmB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16336/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.682373 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1jkw id: 1jkw alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jkw/nostruct-align/1jkw.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jkw/nostruct-align/1jkw.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jkw/nostruct-align/1jkw.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10873/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.063477 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1jli id: 1jli alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jli/nostruct-align/1jli.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jli/nostruct-align/1jli.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jli/nostruct-align/1jli.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28142/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.546387 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1jlyA id: 1jlyA alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jlyA/nostruct-align/1jlyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jlyA/nostruct-align/1jlyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jlyA/nostruct-align/1jlyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10854/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.999329 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1jmcA id: 1jmcA alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jmcA/nostruct-align/1jmcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jmcA/nostruct-align/1jmcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jmcA/nostruct-align/1jmcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20969/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.526367 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1joa id: 1joa alignment found: /projects/compbio/experiments/models.97/pdb/1j/1joa/nostruct-align/1joa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1joa/nostruct-align/1joa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1joa/nostruct-align/1joa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5657/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -29.576416 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1jotA id: 1jotA alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jotA/nostruct-align/1jotA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jotA/nostruct-align/1jotA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jotA/nostruct-align/1jotA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15536/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.198364 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1joyA id: 1joyA alignment found: /projects/compbio/experiments/models.97/pdb/1j/1joyA/nostruct-align/1joyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1joyA/nostruct-align/1joyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1joyA/nostruct-align/1joyA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11280/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.955322 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1jpc id: 1jpc alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jpc/nostruct-align/1jpc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jpc/nostruct-align/1jpc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jpc/nostruct-align/1jpc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12411/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.037354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1jrhI id: 1jrhI alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jrhI/nostruct-align/1jrhI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jrhI/nostruct-align/1jrhI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jrhI/nostruct-align/1jrhI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17928/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.401367 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1jsf id: 1jsf alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jsf/nostruct-align/1jsf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jsf/nostruct-align/1jsf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jsf/nostruct-align/1jsf.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16614/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.702393 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1jsuC id: 1jsuC alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jsuC/nostruct-align/1jsuC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jsuC/nostruct-align/1jsuC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jsuC/nostruct-align/1jsuC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1798/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.623413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1juk id: 1juk alignment found: /projects/compbio/experiments/models.97/pdb/1j/1juk/nostruct-align/1juk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1juk/nostruct-align/1juk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1juk/nostruct-align/1juk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4768/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.742493 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1junA id: 1junA alignment found: /projects/compbio/experiments/models.97/pdb/1j/1junA/nostruct-align/1junA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1junA/nostruct-align/1junA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1junA/nostruct-align/1junA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12474/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.262329 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1jvr id: 1jvr alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jvr/nostruct-align/1jvr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jvr/nostruct-align/1jvr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jvr/nostruct-align/1jvr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23546/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.244385 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1jwe id: 1jwe alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jwe/nostruct-align/1jwe.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jwe/nostruct-align/1jwe.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jwe/nostruct-align/1jwe.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8460/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.771423 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1jxpA id: 1jxpA alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jxpA/nostruct-align/1jxpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jxpA/nostruct-align/1jxpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jxpA/nostruct-align/1jxpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27033/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.230347 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1k89 id: 1k89 alignment found: /projects/compbio/experiments/models.97/pdb/1k/1k89/nostruct-align/1k89.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1k89/nostruct-align/1k89.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1k89/nostruct-align/1k89.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30752/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -22.052368 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1kal id: 1kal alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kal/nostruct-align/1kal.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kal/nostruct-align/1kal.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kal/nostruct-align/1kal.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23191/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.303406 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1kanA id: 1kanA alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kanA/nostruct-align/1kanA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kanA/nostruct-align/1kanA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kanA/nostruct-align/1kanA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27265/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.882324 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1kao id: 1kao alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kao/nostruct-align/1kao.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kao/nostruct-align/1kao.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kao/nostruct-align/1kao.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21801/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.048401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1kapP id: 1kapP alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kapP/nostruct-align/1kapP.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kapP/nostruct-align/1kapP.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kapP/nostruct-align/1kapP.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30261/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.774414 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1kapP_1 id: 1kapP_1 alignment found: /projects/compbio4/experiments/models.97/domains/1k/1kapP_1/nostruct-align/1kapP_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1k/1kapP_1/nostruct-align/1kapP_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1k/1kapP_1/nostruct-align/1kapP_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14024/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.056396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1kapP_2 id: 1kapP_2 alignment found: /projects/compbio4/experiments/models.97/domains/1k/1kapP_2/nostruct-align/1kapP_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1k/1kapP_2/nostruct-align/1kapP_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1k/1kapP_2/nostruct-align/1kapP_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30532/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.804443 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1kas id: 1kas alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kas/nostruct-align/1kas.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kas/nostruct-align/1kas.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kas/nostruct-align/1kas.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21508/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.076416 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1kay id: 1kay alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kay/nostruct-align/1kay.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kay/nostruct-align/1kay.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kay/nostruct-align/1kay.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24139/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.156433 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1kb5B id: 1kb5B alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kb5B/nostruct-align/1kb5B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kb5B/nostruct-align/1kb5B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kb5B/nostruct-align/1kb5B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10901/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.554443 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1kcw id: 1kcw alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kcw/nostruct-align/1kcw.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kcw/nostruct-align/1kcw.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kcw/nostruct-align/1kcw.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26212/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.397339 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1kdxA id: 1kdxA alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kdxA/nostruct-align/1kdxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kdxA/nostruct-align/1kdxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kdxA/nostruct-align/1kdxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18383/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.457397 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1kfd_1 id: 1kfd_1 alignment found: /projects/compbio4/experiments/models.97/domains/1k/1kfd_1/nostruct-align/1kfd_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1k/1kfd_1/nostruct-align/1kfd_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1k/1kfd_1/nostruct-align/1kfd_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4144/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.872375 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1kfd_2 id: 1kfd_2 alignment found: /projects/compbio4/experiments/models.97/domains/1k/1kfd_2/nostruct-align/1kfd_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1k/1kfd_2/nostruct-align/1kfd_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1k/1kfd_2/nostruct-align/1kfd_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10511/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.363403 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1kid id: 1kid alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kid/nostruct-align/1kid.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kid/nostruct-align/1kid.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kid/nostruct-align/1kid.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3975/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.376404 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1kigI id: 1kigI alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kigI/nostruct-align/1kigI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kigI/nostruct-align/1kigI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kigI/nostruct-align/1kigI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14595/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.204407 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1kigL id: 1kigL alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kigL/nostruct-align/1kigL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kigL/nostruct-align/1kigL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kigL/nostruct-align/1kigL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22674/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.468445 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1kimA id: 1kimA alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kimA/nostruct-align/1kimA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kimA/nostruct-align/1kimA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kimA/nostruct-align/1kimA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24940/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.338440 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1kit id: 1kit alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kit/nostruct-align/1kit.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kit/nostruct-align/1kit.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kit/nostruct-align/1kit.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-55/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.887451 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1kjs id: 1kjs alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kjs/nostruct-align/1kjs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kjs/nostruct-align/1kjs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kjs/nostruct-align/1kjs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12024/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.189331 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1klo id: 1klo alignment found: /projects/compbio/experiments/models.97/pdb/1k/1klo/nostruct-align/1klo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1klo/nostruct-align/1klo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1klo/nostruct-align/1klo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2641/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.083374 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1kmnD id: 1kmnD alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kmnD/nostruct-align/1kmnD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kmnD/nostruct-align/1kmnD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kmnD/nostruct-align/1kmnD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20086/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.572388 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1knb id: 1knb alignment found: /projects/compbio/experiments/models.97/pdb/1k/1knb/nostruct-align/1knb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1knb/nostruct-align/1knb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1knb/nostruct-align/1knb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17916/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.873413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1knt id: 1knt alignment found: /projects/compbio/experiments/models.97/pdb/1k/1knt/nostruct-align/1knt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1knt/nostruct-align/1knt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1knt/nostruct-align/1knt.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-26537/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.930420 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1knyA id: 1knyA alignment found: /projects/compbio/experiments/models.97/pdb/1k/1knyA/nostruct-align/1knyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1knyA/nostruct-align/1knyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1knyA/nostruct-align/1knyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9726/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.788330 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1koe id: 1koe alignment found: /projects/compbio/experiments/models.97/pdb/1k/1koe/nostruct-align/1koe.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1koe/nostruct-align/1koe.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1koe/nostruct-align/1koe.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2432/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.501343 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1kp6A id: 1kp6A alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kp6A/nostruct-align/1kp6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kp6A/nostruct-align/1kp6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kp6A/nostruct-align/1kp6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26518/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.193359 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1kpeA id: 1kpeA alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kpeA/nostruct-align/1kpeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kpeA/nostruct-align/1kpeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kpeA/nostruct-align/1kpeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1442/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.716370 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1kpf id: 1kpf alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kpf/nostruct-align/1kpf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kpf/nostruct-align/1kpf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kpf/nostruct-align/1kpf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17267/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.821350 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1kptA id: 1kptA alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kptA/nostruct-align/1kptA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kptA/nostruct-align/1kptA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kptA/nostruct-align/1kptA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1999/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.727417 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1krs id: 1krs alignment found: /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4860/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.874451 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ksiB id: 1ksiB alignment found: /projects/compbio/experiments/models.97/pdb/1k/1ksiB/nostruct-align/1ksiB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1ksiB/nostruct-align/1ksiB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1ksiB/nostruct-align/1ksiB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22015/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.543457 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ksr id: 1ksr alignment found: /projects/compbio/experiments/models.97/pdb/1k/1ksr/nostruct-align/1ksr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1ksr/nostruct-align/1ksr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1ksr/nostruct-align/1ksr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20153/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.726440 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1kst id: 1kst alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kst/nostruct-align/1kst.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kst/nostruct-align/1kst.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kst/nostruct-align/1kst.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28971/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.928406 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1kte id: 1kte alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kte/nostruct-align/1kte.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kte/nostruct-align/1kte.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kte/nostruct-align/1kte.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32288/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.304443 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ktx id: 1ktx alignment found: /projects/compbio/experiments/models.97/pdb/1k/1ktx/nostruct-align/1ktx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1ktx/nostruct-align/1ktx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1ktx/nostruct-align/1ktx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1043/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.547363 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1kuh id: 1kuh alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kuh/nostruct-align/1kuh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kuh/nostruct-align/1kuh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kuh/nostruct-align/1kuh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2993/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.728394 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1kum id: 1kum alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kum/nostruct-align/1kum.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kum/nostruct-align/1kum.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kum/nostruct-align/1kum.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15782/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.346436 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1kveA id: 1kveA alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kveA/nostruct-align/1kveA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kveA/nostruct-align/1kveA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kveA/nostruct-align/1kveA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21077/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.774414 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1kveB id: 1kveB alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kveB/nostruct-align/1kveB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kveB/nostruct-align/1kveB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kveB/nostruct-align/1kveB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8791/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.233398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1kvs id: 1kvs alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kvs/nostruct-align/1kvs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kvs/nostruct-align/1kvs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kvs/nostruct-align/1kvs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5420/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -20.411438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1kwaA id: 1kwaA alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kwaA/nostruct-align/1kwaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kwaA/nostruct-align/1kwaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kwaA/nostruct-align/1kwaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1746/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.959473 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1kwaB id: 1kwaB alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kwaB/nostruct-align/1kwaB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kwaB/nostruct-align/1kwaB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kwaB/nostruct-align/1kwaB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10296/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.891479 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1kzuA id: 1kzuA alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kzuA/nostruct-align/1kzuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kzuA/nostruct-align/1kzuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kzuA/nostruct-align/1kzuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15901/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.879395 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1kzuB id: 1kzuB alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kzuB/nostruct-align/1kzuB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kzuB/nostruct-align/1kzuB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kzuB/nostruct-align/1kzuB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26385/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.500488 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1l58 id: 1l58 alignment found: /projects/compbio/experiments/models.97/pdb/1l/1l58/nostruct-align/1l58.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1l58/nostruct-align/1l58.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1l58/nostruct-align/1l58.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8841/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.461304 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1l92 id: 1l92 alignment found: /projects/compbio/experiments/models.97/pdb/1l/1l92/nostruct-align/1l92.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1l92/nostruct-align/1l92.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1l92/nostruct-align/1l92.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30982/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.425415 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lab id: 1lab alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lab/nostruct-align/1lab.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lab/nostruct-align/1lab.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lab/nostruct-align/1lab.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29230/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.074463 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lam id: 1lam alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lam/nostruct-align/1lam.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lam/nostruct-align/1lam.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lam/nostruct-align/1lam.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11838/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.175354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lam_1 id: 1lam_1 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lam_1/nostruct-align/1lam_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lam_1/nostruct-align/1lam_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1lam_1/nostruct-align/1lam_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19374/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.440430 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lam_2 id: 1lam_2 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lam_2/nostruct-align/1lam_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lam_2/nostruct-align/1lam_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1lam_2/nostruct-align/1lam_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30956/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.762451 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1larA id: 1larA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1larA/nostruct-align/1larA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1larA/nostruct-align/1larA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1larA/nostruct-align/1larA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28918/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.223389 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1latA id: 1latA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1latA/nostruct-align/1latA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1latA/nostruct-align/1latA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1latA/nostruct-align/1latA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28190/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.429443 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lay id: 1lay alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lay/nostruct-align/1lay.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lay/nostruct-align/1lay.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lay/nostruct-align/1lay.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10297/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.697388 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lba id: 1lba alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lba/nostruct-align/1lba.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lba/nostruct-align/1lba.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lba/nostruct-align/1lba.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28586/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.463501 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lbd id: 1lbd alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lbd/nostruct-align/1lbd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lbd/nostruct-align/1lbd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lbd/nostruct-align/1lbd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12636/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.265381 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lbeA id: 1lbeA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lbeA/nostruct-align/1lbeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lbeA/nostruct-align/1lbeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lbeA/nostruct-align/1lbeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29834/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.738342 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lbu id: 1lbu alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lbu/nostruct-align/1lbu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lbu/nostruct-align/1lbu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lbu/nostruct-align/1lbu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16063/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.428345 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lccA id: 1lccA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lccA/nostruct-align/1lccA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lccA/nostruct-align/1lccA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lccA/nostruct-align/1lccA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4238/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.856445 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lcdA id: 1lcdA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lcdA/nostruct-align/1lcdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lcdA/nostruct-align/1lcdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lcdA/nostruct-align/1lcdA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-15297/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.938354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lci id: 1lci alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lci/nostruct-align/1lci.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lci/nostruct-align/1lci.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lci/nostruct-align/1lci.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18066/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.474365 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lcl id: 1lcl alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lcl/nostruct-align/1lcl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lcl/nostruct-align/1lcl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lcl/nostruct-align/1lcl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5396/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.435425 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lct id: 1lct alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lct/nostruct-align/1lct.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lct/nostruct-align/1lct.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lct/nostruct-align/1lct.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17227/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.612427 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ldb_1 id: 1ldb_1 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1ldb_1/nostruct-align/1ldb_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1ldb_1/nostruct-align/1ldb_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1ldb_1/nostruct-align/1ldb_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13790/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.776367 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ldb_2 id: 1ldb_2 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1ldb_2/nostruct-align/1ldb_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1ldb_2/nostruct-align/1ldb_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1ldb_2/nostruct-align/1ldb_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18841/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.546387 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ldl id: 1ldl alignment found: /projects/compbio/experiments/models.97/pdb/1l/1ldl/nostruct-align/1ldl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1ldl/nostruct-align/1ldl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1ldl/nostruct-align/1ldl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4291/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.039429 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ldm_1 id: 1ldm_1 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1ldm_1/nostruct-align/1ldm_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1ldm_1/nostruct-align/1ldm_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1ldm_1/nostruct-align/1ldm_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26773/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.449402 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ldm_2 id: 1ldm_2 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1ldm_2/nostruct-align/1ldm_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1ldm_2/nostruct-align/1ldm_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1ldm_2/nostruct-align/1ldm_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25578/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.952454 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ldr id: 1ldr alignment found: /projects/compbio/experiments/models.97/pdb/1l/1ldr/nostruct-align/1ldr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1ldr/nostruct-align/1ldr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1ldr/nostruct-align/1ldr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12198/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.328369 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ldtL id: 1ldtL alignment found: /projects/compbio/experiments/models.97/pdb/1l/1ldtL/nostruct-align/1ldtL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1ldtL/nostruct-align/1ldtL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1ldtL/nostruct-align/1ldtL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27867/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.029419 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1le4 id: 1le4 alignment found: /projects/compbio/experiments/models.97/pdb/1l/1le4/nostruct-align/1le4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1le4/nostruct-align/1le4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1le4/nostruct-align/1le4.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12346/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.067383 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lea id: 1lea alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lea/nostruct-align/1lea.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lea/nostruct-align/1lea.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lea/nostruct-align/1lea.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14688/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.865356 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1led id: 1led alignment found: /projects/compbio/experiments/models.97/pdb/1l/1led/nostruct-align/1led.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1led/nostruct-align/1led.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1led/nostruct-align/1led.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19356/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.451416 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lehA id: 1lehA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lehA/nostruct-align/1lehA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lehA/nostruct-align/1lehA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lehA/nostruct-align/1lehA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32111/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.859436 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lepA id: 1lepA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lepA/nostruct-align/1lepA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lepA/nostruct-align/1lepA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lepA/nostruct-align/1lepA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11968/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.444336 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lfaA id: 1lfaA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lfaA/nostruct-align/1lfaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lfaA/nostruct-align/1lfaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lfaA/nostruct-align/1lfaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11712/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.816406 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lfb id: 1lfb alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lfb/nostruct-align/1lfb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lfb/nostruct-align/1lfb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lfb/nostruct-align/1lfb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10932/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.350403 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lfdA id: 1lfdA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lfdA/nostruct-align/1lfdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lfdA/nostruct-align/1lfdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lfdA/nostruct-align/1lfdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21918/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.080383 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lghA id: 1lghA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lghA/nostruct-align/1lghA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lghA/nostruct-align/1lghA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lghA/nostruct-align/1lghA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20612/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.314453 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lghB id: 1lghB alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lghB/nostruct-align/1lghB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lghB/nostruct-align/1lghB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lghB/nostruct-align/1lghB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1075/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.594360 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lgr id: 1lgr alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lgr/nostruct-align/1lgr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lgr/nostruct-align/1lgr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lgr/nostruct-align/1lgr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26537/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.120483 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lh1 id: 1lh1 alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lh1/nostruct-align/1lh1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lh1/nostruct-align/1lh1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lh1/nostruct-align/1lh1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24389/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.812378 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1liaA id: 1liaA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1liaA/nostruct-align/1liaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1liaA/nostruct-align/1liaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1liaA/nostruct-align/1liaA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-28868/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.573364 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lid id: 1lid alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lid/nostruct-align/1lid.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lid/nostruct-align/1lid.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lid/nostruct-align/1lid.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24440/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.722412 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lis id: 1lis alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lis/nostruct-align/1lis.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lis/nostruct-align/1lis.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lis/nostruct-align/1lis.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12896/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.294434 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lit id: 1lit alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lit/nostruct-align/1lit.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lit/nostruct-align/1lit.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lit/nostruct-align/1lit.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-29011/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.320435 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ljrA id: 1ljrA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1ljrA/nostruct-align/1ljrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1ljrA/nostruct-align/1ljrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1ljrA/nostruct-align/1ljrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14993/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.047363 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lkfA id: 1lkfA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lkfA/nostruct-align/1lkfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lkfA/nostruct-align/1lkfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lkfA/nostruct-align/1lkfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15444/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.872437 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lki id: 1lki alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lki/nostruct-align/1lki.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lki/nostruct-align/1lki.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lki/nostruct-align/1lki.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19695/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.977356 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lkkA id: 1lkkA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lkkA/nostruct-align/1lkkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lkkA/nostruct-align/1lkkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lkkA/nostruct-align/1lkkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22507/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.369507 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lktA id: 1lktA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lktA/nostruct-align/1lktA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lktA/nostruct-align/1lktA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lktA/nostruct-align/1lktA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5923/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.470459 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ll1 id: 1ll1 alignment found: /projects/compbio/experiments/models.97/pdb/1l/1ll1/nostruct-align/1ll1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1ll1/nostruct-align/1ll1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1ll1/nostruct-align/1ll1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32741/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.627319 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lla id: 1lla alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lla/nostruct-align/1lla.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lla/nostruct-align/1lla.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lla/nostruct-align/1lla.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31537/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.779419 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lla_1 id: 1lla_1 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lla_1/nostruct-align/1lla_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lla_1/nostruct-align/1lla_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1lla_1/nostruct-align/1lla_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23366/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.730469 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lla_2 id: 1lla_2 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lla_2/nostruct-align/1lla_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lla_2/nostruct-align/1lla_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1lla_2/nostruct-align/1lla_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4136/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.792358 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lldA id: 1lldA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lldA/nostruct-align/1lldA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lldA/nostruct-align/1lldA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lldA/nostruct-align/1lldA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17370/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.327332 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lldA_1 id: 1lldA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lldA_1/nostruct-align/1lldA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lldA_1/nostruct-align/1lldA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1lldA_1/nostruct-align/1lldA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19969/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.754333 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lldA_2 id: 1lldA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lldA_2/nostruct-align/1lldA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lldA_2/nostruct-align/1lldA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1lldA_2/nostruct-align/1lldA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2934/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.733337 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lliA id: 1lliA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lliA/nostruct-align/1lliA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lliA/nostruct-align/1lliA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lliA/nostruct-align/1lliA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18293/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.126404 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1llp id: 1llp alignment found: /projects/compbio/experiments/models.97/pdb/1l/1llp/nostruct-align/1llp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1llp/nostruct-align/1llp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1llp/nostruct-align/1llp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2264/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.665405 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lmb3 id: 1lmb3 alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lmb3/nostruct-align/1lmb3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lmb3/nostruct-align/1lmb3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lmb3/nostruct-align/1lmb3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12462/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.128418 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lml id: 1lml alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lml/nostruct-align/1lml.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lml/nostruct-align/1lml.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lml/nostruct-align/1lml.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19143/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.164368 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lmq id: 1lmq alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lmq/nostruct-align/1lmq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lmq/nostruct-align/1lmq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lmq/nostruct-align/1lmq.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26332/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.550415 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lnh id: 1lnh alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lnh/nostruct-align/1lnh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lnh/nostruct-align/1lnh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lnh/nostruct-align/1lnh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25882/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.055420 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lopA id: 1lopA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lopA/nostruct-align/1lopA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lopA/nostruct-align/1lopA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lopA/nostruct-align/1lopA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9072/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.706421 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lou id: 1lou alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lou/nostruct-align/1lou.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lou/nostruct-align/1lou.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lou/nostruct-align/1lou.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7233/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.124390 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1louA id: 1louA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1louA/nostruct-align/1louA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1louA/nostruct-align/1louA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1louA/nostruct-align/1louA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27646/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.120361 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lox id: 1lox alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lox/nostruct-align/1lox.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lox/nostruct-align/1lox.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lox/nostruct-align/1lox.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16014/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.466370 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lpbA id: 1lpbA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lpbA/nostruct-align/1lpbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lpbA/nostruct-align/1lpbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lpbA/nostruct-align/1lpbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31809/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.616394 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lpbA_1 id: 1lpbA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lpbA_1/nostruct-align/1lpbA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lpbA_1/nostruct-align/1lpbA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1lpbA_1/nostruct-align/1lpbA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24158/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.281372 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lpbA_2 id: 1lpbA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lpbA_2/nostruct-align/1lpbA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lpbA_2/nostruct-align/1lpbA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1lpbA_2/nostruct-align/1lpbA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6990/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.932434 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lpe id: 1lpe alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lpe/nostruct-align/1lpe.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lpe/nostruct-align/1lpe.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lpe/nostruct-align/1lpe.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23383/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.674438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lpt id: 1lpt alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lpt/nostruct-align/1lpt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lpt/nostruct-align/1lpt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lpt/nostruct-align/1lpt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9479/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.110413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lre id: 1lre alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lre/nostruct-align/1lre.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lre/nostruct-align/1lre.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lre/nostruct-align/1lre.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8461/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.521362 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lrv id: 1lrv alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lrv/nostruct-align/1lrv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lrv/nostruct-align/1lrv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lrv/nostruct-align/1lrv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31708/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.908325 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lst id: 1lst alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lst/nostruct-align/1lst.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lst/nostruct-align/1lst.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lst/nostruct-align/1lst.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4970/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.093384 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lt3A id: 1lt3A alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lt3A/nostruct-align/1lt3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lt3A/nostruct-align/1lt3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lt3A/nostruct-align/1lt3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14193/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.351379 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ltaC id: 1ltaC alignment found: /projects/compbio/experiments/models.97/pdb/1l/1ltaC/nostruct-align/1ltaC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1ltaC/nostruct-align/1ltaC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1ltaC/nostruct-align/1ltaC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23368/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.026367 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ltm id: 1ltm alignment found: /projects/compbio/experiments/models.97/pdb/1l/1ltm/nostruct-align/1ltm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1ltm/nostruct-align/1ltm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1ltm/nostruct-align/1ltm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5876/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.179443 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ltsA id: 1ltsA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1ltsA/nostruct-align/1ltsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1ltsA/nostruct-align/1ltsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1ltsA/nostruct-align/1ltsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10139/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.739441 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ltsC id: 1ltsC alignment found: /projects/compbio/experiments/models.97/pdb/1l/1ltsC/nostruct-align/1ltsC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1ltsC/nostruct-align/1ltsC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1ltsC/nostruct-align/1ltsC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26573/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.671387 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ltsD id: 1ltsD alignment found: /projects/compbio/experiments/models.97/pdb/1l/1ltsD/nostruct-align/1ltsD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1ltsD/nostruct-align/1ltsD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1ltsD/nostruct-align/1ltsD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17741/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.396362 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lts_1a1 id: 1lts_1a1 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lts_1a1/nostruct-align/1lts_1a1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lts_1a1/nostruct-align/1lts_1a1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1lts_1a1/nostruct-align/1lts_1a1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28555/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.750366 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lucA id: 1lucA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lucA/nostruct-align/1lucA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lucA/nostruct-align/1lucA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lucA/nostruct-align/1lucA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1389/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.125427 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lucB id: 1lucB alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lucB/nostruct-align/1lucB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lucB/nostruct-align/1lucB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lucB/nostruct-align/1lucB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20825/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.784363 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lvk id: 1lvk alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lvk/nostruct-align/1lvk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lvk/nostruct-align/1lvk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lvk/nostruct-align/1lvk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21081/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.925354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lvl id: 1lvl alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lvl/nostruct-align/1lvl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lvl/nostruct-align/1lvl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lvl/nostruct-align/1lvl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2619/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -29.456421 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lvl_1 id: 1lvl_1 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lvl_1/nostruct-align/1lvl_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lvl_1/nostruct-align/1lvl_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1lvl_1/nostruct-align/1lvl_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18797/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -26.736389 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lvl_2 id: 1lvl_2 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lvl_2/nostruct-align/1lvl_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lvl_2/nostruct-align/1lvl_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1lvl_2/nostruct-align/1lvl_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11225/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -24.225342 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lvl_3 id: 1lvl_3 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lvl_3/nostruct-align/1lvl_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lvl_3/nostruct-align/1lvl_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1lvl_3/nostruct-align/1lvl_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29668/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.233398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lxa id: 1lxa alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lxa/nostruct-align/1lxa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lxa/nostruct-align/1lxa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lxa/nostruct-align/1lxa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15668/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.566406 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lxtA id: 1lxtA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lxtA/nostruct-align/1lxtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lxtA/nostruct-align/1lxtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lxtA/nostruct-align/1lxtA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17600/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.407410 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lylA id: 1lylA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lylA/nostruct-align/1lylA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lylA/nostruct-align/1lylA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lylA/nostruct-align/1lylA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10638/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.970337 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lylA_1 id: 1lylA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lylA_1/nostruct-align/1lylA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lylA_1/nostruct-align/1lylA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1lylA_1/nostruct-align/1lylA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11604/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.321350 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lylA_2 id: 1lylA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lylA_2/nostruct-align/1lylA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lylA_2/nostruct-align/1lylA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1lylA_2/nostruct-align/1lylA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20219/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.475342 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lyp id: 1lyp alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lyp/nostruct-align/1lyp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lyp/nostruct-align/1lyp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lyp/nostruct-align/1lyp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10229/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.682373 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1lywA id: 1lywA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lywA/nostruct-align/1lywA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lywA/nostruct-align/1lywA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lywA/nostruct-align/1lywA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-504/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.749390 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1m6pA id: 1m6pA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1m6pA/nostruct-align/1m6pA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1m6pA/nostruct-align/1m6pA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1m6pA/nostruct-align/1m6pA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24544/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.061462 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mai id: 1mai alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mai/nostruct-align/1mai.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mai/nostruct-align/1mai.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mai/nostruct-align/1mai.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32216/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.778442 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mak id: 1mak alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mak/nostruct-align/1mak.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mak/nostruct-align/1mak.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mak/nostruct-align/1mak.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28910/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.695435 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mal id: 1mal alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mal/nostruct-align/1mal.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mal/nostruct-align/1mal.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mal/nostruct-align/1mal.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4306/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.411377 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mat id: 1mat alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mat/nostruct-align/1mat.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mat/nostruct-align/1mat.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mat/nostruct-align/1mat.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29828/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.560364 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1maz id: 1maz alignment found: /projects/compbio/experiments/models.97/pdb/1m/1maz/nostruct-align/1maz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1maz/nostruct-align/1maz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1maz/nostruct-align/1maz.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18013/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.996460 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mba id: 1mba alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mba/nostruct-align/1mba.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mba/nostruct-align/1mba.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mba/nostruct-align/1mba.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3822/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.567383 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mbd id: 1mbd alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mbd/nostruct-align/1mbd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mbd/nostruct-align/1mbd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mbd/nostruct-align/1mbd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29840/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.140503 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mbe id: 1mbe alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mbe/nostruct-align/1mbe.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mbe/nostruct-align/1mbe.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mbe/nostruct-align/1mbe.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13959/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.560425 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mctA id: 1mctA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mctA/nostruct-align/1mctA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mctA/nostruct-align/1mctA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mctA/nostruct-align/1mctA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27903/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.635376 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mctI id: 1mctI alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mctI/nostruct-align/1mctI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mctI/nostruct-align/1mctI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mctI/nostruct-align/1mctI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11258/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.599365 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mdc id: 1mdc alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mdc/nostruct-align/1mdc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mdc/nostruct-align/1mdc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mdc/nostruct-align/1mdc.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-194/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.684448 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mdiA id: 1mdiA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mdiA/nostruct-align/1mdiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mdiA/nostruct-align/1mdiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mdiA/nostruct-align/1mdiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12352/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.349487 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mdl id: 1mdl alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mdl/nostruct-align/1mdl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mdl/nostruct-align/1mdl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mdl/nostruct-align/1mdl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1354/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.374451 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mdyA id: 1mdyA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mdyA/nostruct-align/1mdyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mdyA/nostruct-align/1mdyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mdyA/nostruct-align/1mdyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4887/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.564453 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mea id: 1mea alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mea/nostruct-align/1mea.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mea/nostruct-align/1mea.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mea/nostruct-align/1mea.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5545/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.529419 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1memA id: 1memA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1memA/nostruct-align/1memA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1memA/nostruct-align/1memA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1memA/nostruct-align/1memA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20899/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.724426 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mfa id: 1mfa alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mfa/nostruct-align/1mfa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mfa/nostruct-align/1mfa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mfa/nostruct-align/1mfa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24719/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.806396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mfiA id: 1mfiA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mfiA/nostruct-align/1mfiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mfiA/nostruct-align/1mfiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mfiA/nostruct-align/1mfiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6287/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.990356 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mfmA id: 1mfmA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mfmA/nostruct-align/1mfmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mfmA/nostruct-align/1mfmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mfmA/nostruct-align/1mfmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11652/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.070435 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mfs id: 1mfs alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mfs/nostruct-align/1mfs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mfs/nostruct-align/1mfs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mfs/nostruct-align/1mfs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29947/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.906372 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mgn id: 1mgn alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mgn/nostruct-align/1mgn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mgn/nostruct-align/1mgn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mgn/nostruct-align/1mgn.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22160/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.837402 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mgtA id: 1mgtA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mgtA/nostruct-align/1mgtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mgtA/nostruct-align/1mgtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mgtA/nostruct-align/1mgtA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2941/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.256348 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mh1 id: 1mh1 alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mh1/nostruct-align/1mh1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mh1/nostruct-align/1mh1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mh1/nostruct-align/1mh1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28588/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.067383 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mhdA id: 1mhdA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mhdA/nostruct-align/1mhdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mhdA/nostruct-align/1mhdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mhdA/nostruct-align/1mhdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6321/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.430420 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mhlA id: 1mhlA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mhlA/nostruct-align/1mhlA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mhlA/nostruct-align/1mhlA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mhlA/nostruct-align/1mhlA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29336/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.706421 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mhlC id: 1mhlC alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mhlC/nostruct-align/1mhlC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mhlC/nostruct-align/1mhlC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mhlC/nostruct-align/1mhlC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18797/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.160400 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mhl_1a1 id: 1mhl_1a1 alignment found: /projects/compbio4/experiments/models.97/domains/1m/1mhl_1a1/nostruct-align/1mhl_1a1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1m/1mhl_1a1/nostruct-align/1mhl_1a1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1m/1mhl_1a1/nostruct-align/1mhl_1a1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7510/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.456421 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mho id: 1mho alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mho/nostruct-align/1mho.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mho/nostruct-align/1mho.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mho/nostruct-align/1mho.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30236/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.157471 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mhu id: 1mhu alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mhu/nostruct-align/1mhu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mhu/nostruct-align/1mhu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mhu/nostruct-align/1mhu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24749/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.321350 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mhyD id: 1mhyD alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mhyD/nostruct-align/1mhyD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mhyD/nostruct-align/1mhyD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mhyD/nostruct-align/1mhyD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32243/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.502319 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1minB id: 1minB alignment found: /projects/compbio/experiments/models.97/pdb/1m/1minB/nostruct-align/1minB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1minB/nostruct-align/1minB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1minB/nostruct-align/1minB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-10511/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.126465 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mjc id: 1mjc alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mjc/nostruct-align/1mjc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mjc/nostruct-align/1mjc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mjc/nostruct-align/1mjc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23205/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.950317 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mjhA id: 1mjhA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mjhA/nostruct-align/1mjhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mjhA/nostruct-align/1mjhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mjhA/nostruct-align/1mjhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14231/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.477478 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mjhB id: 1mjhB alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mjhB/nostruct-align/1mjhB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mjhB/nostruct-align/1mjhB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mjhB/nostruct-align/1mjhB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26334/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.577393 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mjoA id: 1mjoA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mjoA/nostruct-align/1mjoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mjoA/nostruct-align/1mjoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mjoA/nostruct-align/1mjoA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-25248/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.622375 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mkaA id: 1mkaA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mkaA/nostruct-align/1mkaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mkaA/nostruct-align/1mkaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mkaA/nostruct-align/1mkaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16513/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.240356 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mkcA id: 1mkcA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mkcA/nostruct-align/1mkcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mkcA/nostruct-align/1mkcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mkcA/nostruct-align/1mkcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18377/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.014404 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mknA id: 1mknA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mknA/nostruct-align/1mknA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mknA/nostruct-align/1mknA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mknA/nostruct-align/1mknA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8106/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.966431 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mla id: 1mla alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mla/nostruct-align/1mla.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mla/nostruct-align/1mla.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mla/nostruct-align/1mla.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29415/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.388428 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mla_1 id: 1mla_1 alignment found: /projects/compbio4/experiments/models.97/domains/1m/1mla_1/nostruct-align/1mla_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1m/1mla_1/nostruct-align/1mla_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1m/1mla_1/nostruct-align/1mla_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26470/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.978394 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mla_2 id: 1mla_2 alignment found: /projects/compbio4/experiments/models.97/domains/1m/1mla_2/nostruct-align/1mla_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1m/1mla_2/nostruct-align/1mla_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1m/1mla_2/nostruct-align/1mla_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1379/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.204346 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mlbA id: 1mlbA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mlbA/nostruct-align/1mlbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mlbA/nostruct-align/1mlbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mlbA/nostruct-align/1mlbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11050/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.608398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mlcB id: 1mlcB alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mlcB/nostruct-align/1mlcB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mlcB/nostruct-align/1mlcB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mlcB/nostruct-align/1mlcB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21932/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.766357 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mli id: 1mli alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mli/nostruct-align/1mli.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mli/nostruct-align/1mli.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mli/nostruct-align/1mli.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24734/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.021362 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mml id: 1mml alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mml/nostruct-align/1mml.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mml/nostruct-align/1mml.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mml/nostruct-align/1mml.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14842/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.789429 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mmoB id: 1mmoB alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mmoB/nostruct-align/1mmoB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mmoB/nostruct-align/1mmoB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mmoB/nostruct-align/1mmoB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16865/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.280396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mmoD id: 1mmoD alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mmoD/nostruct-align/1mmoD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mmoD/nostruct-align/1mmoD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mmoD/nostruct-align/1mmoD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23230/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.523315 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mmoG id: 1mmoG alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mmoG/nostruct-align/1mmoG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mmoG/nostruct-align/1mmoG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mmoG/nostruct-align/1mmoG.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8008/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.985413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mn1 id: 1mn1 alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mn1/nostruct-align/1mn1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mn1/nostruct-align/1mn1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mn1/nostruct-align/1mn1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-162/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.532349 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mnd id: 1mnd alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mnd/nostruct-align/1mnd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mnd/nostruct-align/1mnd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mnd/nostruct-align/1mnd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22541/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.283325 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mngA id: 1mngA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mngA/nostruct-align/1mngA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mngA/nostruct-align/1mngA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mngA/nostruct-align/1mngA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-798/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.012329 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mngA_1 id: 1mngA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1m/1mngA_1/nostruct-align/1mngA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1m/1mngA_1/nostruct-align/1mngA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1m/1mngA_1/nostruct-align/1mngA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13970/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.915405 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mngA_2 id: 1mngA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1m/1mngA_2/nostruct-align/1mngA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1m/1mngA_2/nostruct-align/1mngA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1m/1mngA_2/nostruct-align/1mngA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29123/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.109375 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mnmA id: 1mnmA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mnmA/nostruct-align/1mnmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mnmA/nostruct-align/1mnmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mnmA/nostruct-align/1mnmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24448/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.827393 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mnmC id: 1mnmC alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mnmC/nostruct-align/1mnmC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mnmC/nostruct-align/1mnmC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mnmC/nostruct-align/1mnmC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18648/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.636353 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mntA id: 1mntA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mntA/nostruct-align/1mntA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mntA/nostruct-align/1mntA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mntA/nostruct-align/1mntA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18719/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.903442 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mof id: 1mof alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mof/nostruct-align/1mof.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mof/nostruct-align/1mof.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mof/nostruct-align/1mof.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19091/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.564453 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1molA id: 1molA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1molA/nostruct-align/1molA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1molA/nostruct-align/1molA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1molA/nostruct-align/1molA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19024/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.975403 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1moq id: 1moq alignment found: /projects/compbio/experiments/models.97/pdb/1m/1moq/nostruct-align/1moq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1moq/nostruct-align/1moq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1moq/nostruct-align/1moq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-405/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.117371 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mpb id: 1mpb alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mpb/nostruct-align/1mpb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mpb/nostruct-align/1mpb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mpb/nostruct-align/1mpb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29915/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.032471 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mpgA id: 1mpgA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mpgA/nostruct-align/1mpgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mpgA/nostruct-align/1mpgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mpgA/nostruct-align/1mpgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10445/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.526489 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mpp id: 1mpp alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mpp/nostruct-align/1mpp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mpp/nostruct-align/1mpp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mpp/nostruct-align/1mpp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6339/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.814453 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mpyA id: 1mpyA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mpyA/nostruct-align/1mpyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mpyA/nostruct-align/1mpyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mpyA/nostruct-align/1mpyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-514/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.220337 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mrj id: 1mrj alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mrj/nostruct-align/1mrj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mrj/nostruct-align/1mrj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mrj/nostruct-align/1mrj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15247/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.026367 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mroA id: 1mroA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mroA/nostruct-align/1mroA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mroA/nostruct-align/1mroA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mroA/nostruct-align/1mroA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3861/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.306335 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mroB id: 1mroB alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mroB/nostruct-align/1mroB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mroB/nostruct-align/1mroB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mroB/nostruct-align/1mroB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18161/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.070374 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mroC id: 1mroC alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mroC/nostruct-align/1mroC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mroC/nostruct-align/1mroC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mroC/nostruct-align/1mroC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22489/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.477417 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mrp id: 1mrp alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mrp/nostruct-align/1mrp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mrp/nostruct-align/1mrp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mrp/nostruct-align/1mrp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30016/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.922485 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mrt id: 1mrt alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mrt/nostruct-align/1mrt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mrt/nostruct-align/1mrt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mrt/nostruct-align/1mrt.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24933/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.441406 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1msaA id: 1msaA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1msaA/nostruct-align/1msaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1msaA/nostruct-align/1msaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1msaA/nostruct-align/1msaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17862/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.017456 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1msc id: 1msc alignment found: /projects/compbio/experiments/models.97/pdb/1m/1msc/nostruct-align/1msc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1msc/nostruct-align/1msc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1msc/nostruct-align/1msc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8846/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.083374 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mseC_1 id: 1mseC_1 alignment found: /projects/compbio4/experiments/models.97/domains/1m/1mseC_1/nostruct-align/1mseC_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1m/1mseC_1/nostruct-align/1mseC_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1m/1mseC_1/nostruct-align/1mseC_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21668/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.822510 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mseC_2 id: 1mseC_2 alignment found: /projects/compbio4/experiments/models.97/domains/1m/1mseC_2/nostruct-align/1mseC_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1m/1mseC_2/nostruct-align/1mseC_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1m/1mseC_2/nostruct-align/1mseC_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3293/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.960449 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1msi id: 1msi alignment found: /projects/compbio/experiments/models.97/pdb/1m/1msi/nostruct-align/1msi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1msi/nostruct-align/1msi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1msi/nostruct-align/1msi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22660/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.566406 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1msk id: 1msk alignment found: /projects/compbio/experiments/models.97/pdb/1m/1msk/nostruct-align/1msk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1msk/nostruct-align/1msk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1msk/nostruct-align/1msk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31231/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.274475 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mslA id: 1mslA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mslA/nostruct-align/1mslA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mslA/nostruct-align/1mslA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mslA/nostruct-align/1mslA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3632/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.840332 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mspA id: 1mspA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mspA/nostruct-align/1mspA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mspA/nostruct-align/1mspA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mspA/nostruct-align/1mspA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15316/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.308350 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mtnC id: 1mtnC alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mtnC/nostruct-align/1mtnC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mtnC/nostruct-align/1mtnC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mtnC/nostruct-align/1mtnC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19088/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.111450 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mtyB id: 1mtyB alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mtyB/nostruct-align/1mtyB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mtyB/nostruct-align/1mtyB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mtyB/nostruct-align/1mtyB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15294/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.237427 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mtyD id: 1mtyD alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mtyD/nostruct-align/1mtyD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mtyD/nostruct-align/1mtyD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mtyD/nostruct-align/1mtyD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30229/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.523315 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mtyG id: 1mtyG alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mtyG/nostruct-align/1mtyG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mtyG/nostruct-align/1mtyG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mtyG/nostruct-align/1mtyG.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1776/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.985413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mucA id: 1mucA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mucA/nostruct-align/1mucA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mucA/nostruct-align/1mucA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mucA/nostruct-align/1mucA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32106/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.217468 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mugA id: 1mugA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mugA/nostruct-align/1mugA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mugA/nostruct-align/1mugA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mugA/nostruct-align/1mugA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18987/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.432434 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mun id: 1mun alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mun/nostruct-align/1mun.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mun/nostruct-align/1mun.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mun/nostruct-align/1mun.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2134/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.606445 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mup id: 1mup alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mup/nostruct-align/1mup.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mup/nostruct-align/1mup.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mup/nostruct-align/1mup.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31492/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.708374 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mut id: 1mut alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mut/nostruct-align/1mut.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mut/nostruct-align/1mut.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mut/nostruct-align/1mut.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1942/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.152466 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mvpA id: 1mvpA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mvpA/nostruct-align/1mvpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mvpA/nostruct-align/1mvpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mvpA/nostruct-align/1mvpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26985/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.604370 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mwpA id: 1mwpA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mwpA/nostruct-align/1mwpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mwpA/nostruct-align/1mwpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mwpA/nostruct-align/1mwpA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7411/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.194397 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mxa id: 1mxa alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mxa/nostruct-align/1mxa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mxa/nostruct-align/1mxa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mxa/nostruct-align/1mxa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5628/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.109375 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mxb id: 1mxb alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mxb/nostruct-align/1mxb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mxb/nostruct-align/1mxb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mxb/nostruct-align/1mxb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20020/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.220398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mykA id: 1mykA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mykA/nostruct-align/1mykA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mykA/nostruct-align/1mykA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mykA/nostruct-align/1mykA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31278/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.104370 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mypA id: 1mypA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mypA/nostruct-align/1mypA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mypA/nostruct-align/1mypA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mypA/nostruct-align/1mypA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29948/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.877319 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mysA_1 id: 1mysA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1m/1mysA_1/nostruct-align/1mysA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1m/1mysA_1/nostruct-align/1mysA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1m/1mysA_1/nostruct-align/1mysA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7460/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.318481 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1mysA_2 id: 1mysA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1m/1mysA_2/nostruct-align/1mysA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1m/1mysA_2/nostruct-align/1mysA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1m/1mysA_2/nostruct-align/1mysA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19994/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.743408 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1myt id: 1myt alignment found: /projects/compbio/experiments/models.97/pdb/1m/1myt/nostruct-align/1myt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1myt/nostruct-align/1myt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1myt/nostruct-align/1myt.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27387/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.845337 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nal1 id: 1nal1 alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nal1/nostruct-align/1nal1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nal1/nostruct-align/1nal1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nal1/nostruct-align/1nal1.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-8260/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.401367 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nal3 id: 1nal3 alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nal3/nostruct-align/1nal3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nal3/nostruct-align/1nal3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nal3/nostruct-align/1nal3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28555/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.121399 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1napA id: 1napA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1napA/nostruct-align/1napA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1napA/nostruct-align/1napA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1napA/nostruct-align/1napA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-16707/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.252441 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nar id: 1nar alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nar/nostruct-align/1nar.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nar/nostruct-align/1nar.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nar/nostruct-align/1nar.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12534/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.785400 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nbaA id: 1nbaA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nbaA/nostruct-align/1nbaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nbaA/nostruct-align/1nbaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nbaA/nostruct-align/1nbaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4523/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.035400 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nbcA id: 1nbcA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nbcA/nostruct-align/1nbcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nbcA/nostruct-align/1nbcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nbcA/nostruct-align/1nbcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15964/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.106445 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nbmG id: 1nbmG alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nbmG/nostruct-align/1nbmG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nbmG/nostruct-align/1nbmG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nbmG/nostruct-align/1nbmG.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25506/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.588440 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ncfA_1 id: 1ncfA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1n/1ncfA_1/nostruct-align/1ncfA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1n/1ncfA_1/nostruct-align/1ncfA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1n/1ncfA_1/nostruct-align/1ncfA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29567/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.894409 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ncfA_2 id: 1ncfA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1n/1ncfA_2/nostruct-align/1ncfA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1n/1ncfA_2/nostruct-align/1ncfA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1n/1ncfA_2/nostruct-align/1ncfA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9996/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.144470 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ncfA_3 id: 1ncfA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1n/1ncfA_3/nostruct-align/1ncfA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1n/1ncfA_3/nostruct-align/1ncfA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1n/1ncfA_3/nostruct-align/1ncfA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22187/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.009460 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nciA id: 1nciA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nciA/nostruct-align/1nciA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nciA/nostruct-align/1nciA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nciA/nostruct-align/1nciA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18130/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.518433 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ncs id: 1ncs alignment found: /projects/compbio/experiments/models.97/pdb/1n/1ncs/nostruct-align/1ncs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1ncs/nostruct-align/1ncs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1ncs/nostruct-align/1ncs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22674/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.473389 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nct id: 1nct alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nct/nostruct-align/1nct.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nct/nostruct-align/1nct.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nct/nostruct-align/1nct.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13715/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.967407 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ncx id: 1ncx alignment found: /projects/compbio/experiments/models.97/pdb/1n/1ncx/nostruct-align/1ncx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1ncx/nostruct-align/1ncx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1ncx/nostruct-align/1ncx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4698/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.728394 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nddD id: 1nddD alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nddD/nostruct-align/1nddD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nddD/nostruct-align/1nddD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nddD/nostruct-align/1nddD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-115/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.302368 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ndh id: 1ndh alignment found: /projects/compbio/experiments/models.97/pdb/1n/1ndh/nostruct-align/1ndh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1ndh/nostruct-align/1ndh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1ndh/nostruct-align/1ndh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31191/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.754395 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ndk id: 1ndk alignment found: /projects/compbio/experiments/models.97/pdb/1n/1ndk/nostruct-align/1ndk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1ndk/nostruct-align/1ndk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1ndk/nostruct-align/1ndk.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19123/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.226440 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ndoA id: 1ndoA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1ndoA/nostruct-align/1ndoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1ndoA/nostruct-align/1ndoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1ndoA/nostruct-align/1ndoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29853/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.366455 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ndoB id: 1ndoB alignment found: /projects/compbio/experiments/models.97/pdb/1n/1ndoB/nostruct-align/1ndoB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1ndoB/nostruct-align/1ndoB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1ndoB/nostruct-align/1ndoB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10524/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.646362 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nedA id: 1nedA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nedA/nostruct-align/1nedA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nedA/nostruct-align/1nedA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nedA/nostruct-align/1nedA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29658/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.969360 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1neq id: 1neq alignment found: /projects/compbio/experiments/models.97/pdb/1n/1neq/nostruct-align/1neq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1neq/nostruct-align/1neq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1neq/nostruct-align/1neq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25222/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.768433 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1neu id: 1neu alignment found: /projects/compbio/experiments/models.97/pdb/1n/1neu/nostruct-align/1neu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1neu/nostruct-align/1neu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1neu/nostruct-align/1neu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27845/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.923340 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1new id: 1new alignment found: /projects/compbio/experiments/models.97/pdb/1n/1new/nostruct-align/1new.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1new/nostruct-align/1new.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1new/nostruct-align/1new.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13065/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.200317 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nf1A id: 1nf1A alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nf1A/nostruct-align/1nf1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nf1A/nostruct-align/1nf1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nf1A/nostruct-align/1nf1A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15667/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.307373 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nfa id: 1nfa alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nfa/nostruct-align/1nfa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nfa/nostruct-align/1nfa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nfa/nostruct-align/1nfa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6053/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.173401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nfdA id: 1nfdA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nfdA/nostruct-align/1nfdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nfdA/nostruct-align/1nfdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nfdA/nostruct-align/1nfdA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-13615/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.039429 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nfiA id: 1nfiA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nfiA/nostruct-align/1nfiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nfiA/nostruct-align/1nfiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nfiA/nostruct-align/1nfiA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31132/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.644348 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nfiE id: 1nfiE alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nfiE/nostruct-align/1nfiE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nfiE/nostruct-align/1nfiE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nfiE/nostruct-align/1nfiE.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-9418/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.515381 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nfkA id: 1nfkA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nfkA/nostruct-align/1nfkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nfkA/nostruct-align/1nfkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nfkA/nostruct-align/1nfkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3452/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.934387 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nfn id: 1nfn alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nfn/nostruct-align/1nfn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nfn/nostruct-align/1nfn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nfn/nostruct-align/1nfn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21806/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.737427 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nfp id: 1nfp alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nfp/nostruct-align/1nfp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nfp/nostruct-align/1nfp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nfp/nostruct-align/1nfp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7687/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.804443 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nftA id: 1nftA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nftA/nostruct-align/1nftA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nftA/nostruct-align/1nftA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nftA/nostruct-align/1nftA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25098/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.202454 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ng1 id: 1ng1 alignment found: /projects/compbio/experiments/models.97/pdb/1n/1ng1/nostruct-align/1ng1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1ng1/nostruct-align/1ng1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1ng1/nostruct-align/1ng1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18008/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.230408 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nglA id: 1nglA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nglA/nostruct-align/1nglA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nglA/nostruct-align/1nglA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nglA/nostruct-align/1nglA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9843/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.392334 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ngr id: 1ngr alignment found: /projects/compbio/experiments/models.97/pdb/1n/1ngr/nostruct-align/1ngr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1ngr/nostruct-align/1ngr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1ngr/nostruct-align/1ngr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22413/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.329407 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nhkL id: 1nhkL alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nhkL/nostruct-align/1nhkL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nhkL/nostruct-align/1nhkL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nhkL/nostruct-align/1nhkL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10994/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.135376 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nhp id: 1nhp alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nhp/nostruct-align/1nhp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nhp/nostruct-align/1nhp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nhp/nostruct-align/1nhp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25858/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -29.281433 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nhp_1 id: 1nhp_1 alignment found: /projects/compbio4/experiments/models.97/domains/1n/1nhp_1/nostruct-align/1nhp_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1n/1nhp_1/nostruct-align/1nhp_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1n/1nhp_1/nostruct-align/1nhp_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20855/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -20.175415 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nhp_2 id: 1nhp_2 alignment found: /projects/compbio4/experiments/models.97/domains/1n/1nhp_2/nostruct-align/1nhp_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1n/1nhp_2/nostruct-align/1nhp_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1n/1nhp_2/nostruct-align/1nhp_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2293/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -24.275391 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nhp_3 id: 1nhp_3 alignment found: /projects/compbio4/experiments/models.97/domains/1n/1nhp_3/nostruct-align/1nhp_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1n/1nhp_3/nostruct-align/1nhp_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1n/1nhp_3/nostruct-align/1nhp_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20517/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.446350 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nif id: 1nif alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nif/nostruct-align/1nif.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nif/nostruct-align/1nif.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nif/nostruct-align/1nif.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3940/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.299316 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nif_1 id: 1nif_1 alignment found: /projects/compbio4/experiments/models.97/domains/1n/1nif_1/nostruct-align/1nif_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1n/1nif_1/nostruct-align/1nif_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1n/1nif_1/nostruct-align/1nif_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4725/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.322388 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nif_2 id: 1nif_2 alignment found: /projects/compbio4/experiments/models.97/domains/1n/1nif_2/nostruct-align/1nif_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1n/1nif_2/nostruct-align/1nif_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1n/1nif_2/nostruct-align/1nif_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30110/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.861389 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nipA id: 1nipA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nipA/nostruct-align/1nipA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nipA/nostruct-align/1nipA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nipA/nostruct-align/1nipA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32692/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.695435 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nkd id: 1nkd alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nkd/nostruct-align/1nkd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nkd/nostruct-align/1nkd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nkd/nostruct-align/1nkd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20233/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.037476 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nkl id: 1nkl alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nkl/nostruct-align/1nkl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nkl/nostruct-align/1nkl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nkl/nostruct-align/1nkl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12842/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.451416 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nkr id: 1nkr alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nkr/nostruct-align/1nkr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nkr/nostruct-align/1nkr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nkr/nostruct-align/1nkr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-963/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.290405 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nksA id: 1nksA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nksA/nostruct-align/1nksA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nksA/nostruct-align/1nksA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nksA/nostruct-align/1nksA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15016/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.013428 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nlr id: 1nlr alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nlr/nostruct-align/1nlr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nlr/nostruct-align/1nlr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nlr/nostruct-align/1nlr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14065/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.849365 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nls id: 1nls alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nls/nostruct-align/1nls.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nls/nostruct-align/1nls.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nls/nostruct-align/1nls.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13945/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.107422 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nmtA id: 1nmtA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nmtA/nostruct-align/1nmtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nmtA/nostruct-align/1nmtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nmtA/nostruct-align/1nmtA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25183/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.533447 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nnt id: 1nnt alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nnt/nostruct-align/1nnt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nnt/nostruct-align/1nnt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nnt/nostruct-align/1nnt.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21503/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.279419 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1noa id: 1noa alignment found: /projects/compbio/experiments/models.97/pdb/1n/1noa/nostruct-align/1noa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1noa/nostruct-align/1noa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1noa/nostruct-align/1noa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27086/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.479370 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nom id: 1nom alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nom/nostruct-align/1nom.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nom/nostruct-align/1nom.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nom/nostruct-align/1nom.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27785/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.254395 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nox id: 1nox alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nox/nostruct-align/1nox.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nox/nostruct-align/1nox.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nox/nostruct-align/1nox.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11201/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.622375 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nozA id: 1nozA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nozA/nostruct-align/1nozA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nozA/nostruct-align/1nozA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nozA/nostruct-align/1nozA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12704/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.882324 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1np1A id: 1np1A alignment found: /projects/compbio/experiments/models.97/pdb/1n/1np1A/nostruct-align/1np1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1np1A/nostruct-align/1np1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1np1A/nostruct-align/1np1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-736/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.681396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1npk id: 1npk alignment found: /projects/compbio/experiments/models.97/pdb/1n/1npk/nostruct-align/1npk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1npk/nostruct-align/1npk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1npk/nostruct-align/1npk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21373/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.177368 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1npoA id: 1npoA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1npoA/nostruct-align/1npoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1npoA/nostruct-align/1npoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1npoA/nostruct-align/1npoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29779/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.174438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1npoC id: 1npoC alignment found: /projects/compbio/experiments/models.97/pdb/1n/1npoC/nostruct-align/1npoC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1npoC/nostruct-align/1npoC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1npoC/nostruct-align/1npoC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27047/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.909424 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1npsA id: 1npsA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1npsA/nostruct-align/1npsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1npsA/nostruct-align/1npsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1npsA/nostruct-align/1npsA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18352/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.422363 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nscA id: 1nscA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nscA/nostruct-align/1nscA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nscA/nostruct-align/1nscA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nscA/nostruct-align/1nscA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19960/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.356445 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nseA id: 1nseA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nseA/nostruct-align/1nseA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nseA/nostruct-align/1nseA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nseA/nostruct-align/1nseA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.243408 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nsgB id: 1nsgB alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nsgB/nostruct-align/1nsgB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nsgB/nostruct-align/1nsgB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nsgB/nostruct-align/1nsgB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28866/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.383423 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nsj id: 1nsj alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nsj/nostruct-align/1nsj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nsj/nostruct-align/1nsj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nsj/nostruct-align/1nsj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-204/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.349365 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nstA id: 1nstA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nstA/nostruct-align/1nstA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nstA/nostruct-align/1nstA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nstA/nostruct-align/1nstA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19734/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.656372 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ntcA id: 1ntcA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1ntcA/nostruct-align/1ntcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1ntcA/nostruct-align/1ntcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1ntcA/nostruct-align/1ntcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31450/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.167358 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ntn id: 1ntn alignment found: /projects/compbio/experiments/models.97/pdb/1n/1ntn/nostruct-align/1ntn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1ntn/nostruct-align/1ntn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1ntn/nostruct-align/1ntn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24511/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.670410 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ntr id: 1ntr alignment found: /projects/compbio/experiments/models.97/pdb/1n/1ntr/nostruct-align/1ntr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1ntr/nostruct-align/1ntr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1ntr/nostruct-align/1ntr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21205/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.181396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nubA id: 1nubA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nubA/nostruct-align/1nubA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nubA/nostruct-align/1nubA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nubA/nostruct-align/1nubA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29220/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.050415 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nukA id: 1nukA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nukA/nostruct-align/1nukA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nukA/nostruct-align/1nukA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nukA/nostruct-align/1nukA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21558/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.393433 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nulA id: 1nulA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nulA/nostruct-align/1nulA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nulA/nostruct-align/1nulA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nulA/nostruct-align/1nulA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14867/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.369446 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nwpA id: 1nwpA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nwpA/nostruct-align/1nwpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nwpA/nostruct-align/1nwpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nwpA/nostruct-align/1nwpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25515/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.089417 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nxb id: 1nxb alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nxb/nostruct-align/1nxb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nxb/nostruct-align/1nxb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nxb/nostruct-align/1nxb.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11968/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.487427 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1nzyA id: 1nzyA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nzyA/nostruct-align/1nzyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nzyA/nostruct-align/1nzyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nzyA/nostruct-align/1nzyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24335/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.360413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1oaa id: 1oaa alignment found: /projects/compbio/experiments/models.97/pdb/1o/1oaa/nostruct-align/1oaa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1oaa/nostruct-align/1oaa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1oaa/nostruct-align/1oaa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21603/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -23.185364 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1oacA id: 1oacA alignment found: /projects/compbio/experiments/models.97/pdb/1o/1oacA/nostruct-align/1oacA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1oacA/nostruct-align/1oacA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1oacA/nostruct-align/1oacA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22725/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.412415 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1oacA_1 id: 1oacA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1o/1oacA_1/nostruct-align/1oacA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1o/1oacA_1/nostruct-align/1oacA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1o/1oacA_1/nostruct-align/1oacA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11734/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.513428 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1oacA_2 id: 1oacA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1o/1oacA_2/nostruct-align/1oacA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1o/1oacA_2/nostruct-align/1oacA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1o/1oacA_2/nostruct-align/1oacA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24668/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.069397 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1oacA_3 id: 1oacA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1o/1oacA_3/nostruct-align/1oacA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1o/1oacA_3/nostruct-align/1oacA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1o/1oacA_3/nostruct-align/1oacA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9589/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.776428 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1oacA_4 id: 1oacA_4 alignment found: /projects/compbio4/experiments/models.97/domains/1o/1oacA_4/nostruct-align/1oacA_4.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1o/1oacA_4/nostruct-align/1oacA_4.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1o/1oacA_4/nostruct-align/1oacA_4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5783/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.975403 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1oasA id: 1oasA alignment found: /projects/compbio/experiments/models.97/pdb/1o/1oasA/nostruct-align/1oasA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1oasA/nostruct-align/1oasA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1oasA/nostruct-align/1oasA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18185/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.065369 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1oatA id: 1oatA alignment found: /projects/compbio/experiments/models.97/pdb/1o/1oatA/nostruct-align/1oatA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1oatA/nostruct-align/1oatA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1oatA/nostruct-align/1oatA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27148/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.362488 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1obpA id: 1obpA alignment found: /projects/compbio/experiments/models.97/pdb/1o/1obpA/nostruct-align/1obpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1obpA/nostruct-align/1obpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1obpA/nostruct-align/1obpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13292/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.724365 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1obwA id: 1obwA alignment found: /projects/compbio/experiments/models.97/pdb/1o/1obwA/nostruct-align/1obwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1obwA/nostruct-align/1obwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1obwA/nostruct-align/1obwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17664/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.747437 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1occG id: 1occG alignment found: /projects/compbio/experiments/models.97/pdb/1o/1occG/nostruct-align/1occG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1occG/nostruct-align/1occG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1occG/nostruct-align/1occG.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2552/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.845459 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ocrC id: 1ocrC alignment found: /projects/compbio/experiments/models.97/pdb/1o/1ocrC/nostruct-align/1ocrC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1ocrC/nostruct-align/1ocrC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1ocrC/nostruct-align/1ocrC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5255/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.011353 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ocrD id: 1ocrD alignment found: /projects/compbio/experiments/models.97/pdb/1o/1ocrD/nostruct-align/1ocrD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1ocrD/nostruct-align/1ocrD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1ocrD/nostruct-align/1ocrD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12863/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.839355 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1octC id: 1octC alignment found: /projects/compbio/experiments/models.97/pdb/1o/1octC/nostruct-align/1octC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1octC/nostruct-align/1octC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1octC/nostruct-align/1octC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16179/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.879395 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1octC_1 id: 1octC_1 alignment found: /projects/compbio4/experiments/models.97/domains/1o/1octC_1/nostruct-align/1octC_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1o/1octC_1/nostruct-align/1octC_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1o/1octC_1/nostruct-align/1octC_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5594/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.257324 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1octC_2 id: 1octC_2 alignment found: /projects/compbio4/experiments/models.97/domains/1o/1octC_2/nostruct-align/1octC_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1o/1octC_2/nostruct-align/1octC_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1o/1octC_2/nostruct-align/1octC_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18657/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.989380 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ofgA id: 1ofgA alignment found: /projects/compbio/experiments/models.97/pdb/1o/1ofgA/nostruct-align/1ofgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1ofgA/nostruct-align/1ofgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1ofgA/nostruct-align/1ofgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19467/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.892395 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ofv id: 1ofv alignment found: /projects/compbio/experiments/models.97/pdb/1o/1ofv/nostruct-align/1ofv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1ofv/nostruct-align/1ofv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1ofv/nostruct-align/1ofv.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7178/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.811401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ois id: 1ois alignment found: /projects/compbio/experiments/models.97/pdb/1o/1ois/nostruct-align/1ois.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1ois/nostruct-align/1ois.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1ois/nostruct-align/1ois.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32759/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.647339 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1olgA id: 1olgA alignment found: /projects/compbio/experiments/models.97/pdb/1o/1olgA/nostruct-align/1olgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1olgA/nostruct-align/1olgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1olgA/nostruct-align/1olgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20548/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.909424 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1om2A id: 1om2A alignment found: /projects/compbio/experiments/models.97/pdb/1o/1om2A/nostruct-align/1om2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1om2A/nostruct-align/1om2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1om2A/nostruct-align/1om2A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-751/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.588440 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1omc id: 1omc alignment found: /projects/compbio/experiments/models.97/pdb/1o/1omc/nostruct-align/1omc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1omc/nostruct-align/1omc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1omc/nostruct-align/1omc.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-9679/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.754456 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1omn id: 1omn alignment found: /projects/compbio/experiments/models.97/pdb/1o/1omn/nostruct-align/1omn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1omn/nostruct-align/1omn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1omn/nostruct-align/1omn.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-11627/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.672363 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1omp id: 1omp alignment found: /projects/compbio/experiments/models.97/pdb/1o/1omp/nostruct-align/1omp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1omp/nostruct-align/1omp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1omp/nostruct-align/1omp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1881/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.239380 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1onc id: 1onc alignment found: /projects/compbio/experiments/models.97/pdb/1o/1onc/nostruct-align/1onc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1onc/nostruct-align/1onc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1onc/nostruct-align/1onc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14679/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.858398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1oneA id: 1oneA alignment found: /projects/compbio/experiments/models.97/pdb/1o/1oneA/nostruct-align/1oneA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1oneA/nostruct-align/1oneA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1oneA/nostruct-align/1oneA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-893/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.619324 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1onrA id: 1onrA alignment found: /projects/compbio/experiments/models.97/pdb/1o/1onrA/nostruct-align/1onrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1onrA/nostruct-align/1onrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1onrA/nostruct-align/1onrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11628/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.351440 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1opbA id: 1opbA alignment found: /projects/compbio/experiments/models.97/pdb/1o/1opbA/nostruct-align/1opbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1opbA/nostruct-align/1opbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1opbA/nostruct-align/1opbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2835/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.980347 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1opc id: 1opc alignment found: /projects/compbio/experiments/models.97/pdb/1o/1opc/nostruct-align/1opc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1opc/nostruct-align/1opc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1opc/nostruct-align/1opc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20222/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.778442 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1opd id: 1opd alignment found: /projects/compbio/experiments/models.97/pdb/1o/1opd/nostruct-align/1opd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1opd/nostruct-align/1opd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1opd/nostruct-align/1opd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12088/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.289368 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1opp id: 1opp alignment found: /projects/compbio/experiments/models.97/pdb/1o/1opp/nostruct-align/1opp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1opp/nostruct-align/1opp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1opp/nostruct-align/1opp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18078/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.417358 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1opr id: 1opr alignment found: /projects/compbio/experiments/models.97/pdb/1o/1opr/nostruct-align/1opr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1opr/nostruct-align/1opr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1opr/nostruct-align/1opr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6700/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.096313 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1opy id: 1opy alignment found: /projects/compbio/experiments/models.97/pdb/1o/1opy/nostruct-align/1opy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1opy/nostruct-align/1opy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1opy/nostruct-align/1opy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1554/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.699463 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ora_1 id: 1ora_1 alignment found: /projects/compbio4/experiments/models.97/domains/1o/1ora_1/nostruct-align/1ora_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1o/1ora_1/nostruct-align/1ora_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1o/1ora_1/nostruct-align/1ora_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27357/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.066406 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ora_2 id: 1ora_2 alignment found: /projects/compbio4/experiments/models.97/domains/1o/1ora_2/nostruct-align/1ora_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1o/1ora_2/nostruct-align/1ora_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1o/1ora_2/nostruct-align/1ora_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21101/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.612427 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1orc id: 1orc alignment found: /projects/compbio/experiments/models.97/pdb/1o/1orc/nostruct-align/1orc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1orc/nostruct-align/1orc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1orc/nostruct-align/1orc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16023/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.957336 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ordA id: 1ordA alignment found: /projects/compbio/experiments/models.97/pdb/1o/1ordA/nostruct-align/1ordA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1ordA/nostruct-align/1ordA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1ordA/nostruct-align/1ordA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31949/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.442383 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ordA_1 id: 1ordA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1o/1ordA_1/nostruct-align/1ordA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1o/1ordA_1/nostruct-align/1ordA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1o/1ordA_1/nostruct-align/1ordA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8616/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.080444 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ordA_2 id: 1ordA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1o/1ordA_2/nostruct-align/1ordA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1o/1ordA_2/nostruct-align/1ordA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1o/1ordA_2/nostruct-align/1ordA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5565/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.217407 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ordA_3 id: 1ordA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1o/1ordA_3/nostruct-align/1ordA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1o/1ordA_3/nostruct-align/1ordA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1o/1ordA_3/nostruct-align/1ordA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18659/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.860474 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1osa id: 1osa alignment found: /projects/compbio/experiments/models.97/pdb/1o/1osa/nostruct-align/1osa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1osa/nostruct-align/1osa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1osa/nostruct-align/1osa.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24813/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.998413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ospH id: 1ospH alignment found: /projects/compbio/experiments/models.97/pdb/1o/1ospH/nostruct-align/1ospH.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1ospH/nostruct-align/1ospH.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1ospH/nostruct-align/1ospH.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30444/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.219360 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ospL id: 1ospL alignment found: /projects/compbio/experiments/models.97/pdb/1o/1ospL/nostruct-align/1ospL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1ospL/nostruct-align/1ospL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1ospL/nostruct-align/1ospL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14810/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.704468 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ospO id: 1ospO alignment found: /projects/compbio/experiments/models.97/pdb/1o/1ospO/nostruct-align/1ospO.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1ospO/nostruct-align/1ospO.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1ospO/nostruct-align/1ospO.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30333/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.921509 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1otcA id: 1otcA alignment found: /projects/compbio/experiments/models.97/pdb/1o/1otcA/nostruct-align/1otcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1otcA/nostruct-align/1otcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1otcA/nostruct-align/1otcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21770/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.305420 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1otcB id: 1otcB alignment found: /projects/compbio/experiments/models.97/pdb/1o/1otcB/nostruct-align/1otcB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1otcB/nostruct-align/1otcB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1otcB/nostruct-align/1otcB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20072/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.284363 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1otfA id: 1otfA alignment found: /projects/compbio/experiments/models.97/pdb/1o/1otfA/nostruct-align/1otfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1otfA/nostruct-align/1otfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1otfA/nostruct-align/1otfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12173/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.400391 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1otgA id: 1otgA alignment found: /projects/compbio/experiments/models.97/pdb/1o/1otgA/nostruct-align/1otgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1otgA/nostruct-align/1otgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1otgA/nostruct-align/1otgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26841/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.470398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1othA id: 1othA alignment found: /projects/compbio/experiments/models.97/pdb/1o/1othA/nostruct-align/1othA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1othA/nostruct-align/1othA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1othA/nostruct-align/1othA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29937/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.964355 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ounA id: 1ounA alignment found: /projects/compbio/experiments/models.97/pdb/1o/1ounA/nostruct-align/1ounA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1ounA/nostruct-align/1ounA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1ounA/nostruct-align/1ounA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24742/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.363403 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ovaA id: 1ovaA alignment found: /projects/compbio/experiments/models.97/pdb/1o/1ovaA/nostruct-align/1ovaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1ovaA/nostruct-align/1ovaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1ovaA/nostruct-align/1ovaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-706/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.709351 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1oxa id: 1oxa alignment found: /projects/compbio/experiments/models.97/pdb/1o/1oxa/nostruct-align/1oxa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1oxa/nostruct-align/1oxa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1oxa/nostruct-align/1oxa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30228/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.314453 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1oya id: 1oya alignment found: /projects/compbio/experiments/models.97/pdb/1o/1oya/nostruct-align/1oya.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1oya/nostruct-align/1oya.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1oya/nostruct-align/1oya.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15688/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.819397 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1oyc id: 1oyc alignment found: /projects/compbio/experiments/models.97/pdb/1o/1oyc/nostruct-align/1oyc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1oyc/nostruct-align/1oyc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1oyc/nostruct-align/1oyc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13530/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.897461 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1p04A id: 1p04A alignment found: /projects/compbio/experiments/models.97/pdb/1p/1p04A/nostruct-align/1p04A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1p04A/nostruct-align/1p04A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1p04A/nostruct-align/1p04A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-11015/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.319336 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1p32A id: 1p32A alignment found: /projects/compbio/experiments/models.97/pdb/1p/1p32A/nostruct-align/1p32A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1p32A/nostruct-align/1p32A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1p32A/nostruct-align/1p32A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2584/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.437378 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1p32C id: 1p32C alignment found: /projects/compbio/experiments/models.97/pdb/1p/1p32C/nostruct-align/1p32C.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1p32C/nostruct-align/1p32C.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1p32C/nostruct-align/1p32C.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15556/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.613403 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1p35A id: 1p35A alignment found: /projects/compbio/experiments/models.97/pdb/1p/1p35A/nostruct-align/1p35A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1p35A/nostruct-align/1p35A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1p35A/nostruct-align/1p35A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22864/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.582397 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1paa id: 1paa alignment found: /projects/compbio/experiments/models.97/pdb/1p/1paa/nostruct-align/1paa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1paa/nostruct-align/1paa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1paa/nostruct-align/1paa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18365/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.129395 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pah id: 1pah alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pah/nostruct-align/1pah.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pah/nostruct-align/1pah.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pah/nostruct-align/1pah.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31480/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.011475 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pamA id: 1pamA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pamA/nostruct-align/1pamA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pamA/nostruct-align/1pamA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pamA/nostruct-align/1pamA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7079/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -20.137451 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1parA id: 1parA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1parA/nostruct-align/1parA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1parA/nostruct-align/1parA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1parA/nostruct-align/1parA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2499/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.341370 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pauA id: 1pauA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pauA/nostruct-align/1pauA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pauA/nostruct-align/1pauA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pauA/nostruct-align/1pauA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27334/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.813354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pauB id: 1pauB alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pauB/nostruct-align/1pauB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pauB/nostruct-align/1pauB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pauB/nostruct-align/1pauB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30427/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.435425 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1paz id: 1paz alignment found: /projects/compbio/experiments/models.97/pdb/1p/1paz/nostruct-align/1paz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1paz/nostruct-align/1paz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1paz/nostruct-align/1paz.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22073/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.042480 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pba id: 1pba alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pba/nostruct-align/1pba.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pba/nostruct-align/1pba.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pba/nostruct-align/1pba.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28996/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.013428 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pbe id: 1pbe alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pbe/nostruct-align/1pbe.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pbe/nostruct-align/1pbe.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pbe/nostruct-align/1pbe.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23153/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -25.357422 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pbe_1 id: 1pbe_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pbe_1/nostruct-align/1pbe_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pbe_1/nostruct-align/1pbe_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pbe_1/nostruct-align/1pbe_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7154/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -24.108459 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pbe_2 id: 1pbe_2 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pbe_2/nostruct-align/1pbe_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pbe_2/nostruct-align/1pbe_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pbe_2/nostruct-align/1pbe_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8096/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.704346 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pbgA id: 1pbgA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pbgA/nostruct-align/1pbgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pbgA/nostruct-align/1pbgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pbgA/nostruct-align/1pbgA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-13005/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.838379 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pbn id: 1pbn alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pbn/nostruct-align/1pbn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pbn/nostruct-align/1pbn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pbn/nostruct-align/1pbn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32579/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.630371 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pbp id: 1pbp alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pbp/nostruct-align/1pbp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pbp/nostruct-align/1pbp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pbp/nostruct-align/1pbp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19256/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.952393 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pbv id: 1pbv alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pbv/nostruct-align/1pbv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pbv/nostruct-align/1pbv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pbv/nostruct-align/1pbv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7016/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.545410 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pbwA id: 1pbwA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pbwA/nostruct-align/1pbwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pbwA/nostruct-align/1pbwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pbwA/nostruct-align/1pbwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15966/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.932495 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pce id: 1pce alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pce/nostruct-align/1pce.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pce/nostruct-align/1pce.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pce/nostruct-align/1pce.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27944/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.875427 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pcfA id: 1pcfA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pcfA/nostruct-align/1pcfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pcfA/nostruct-align/1pcfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pcfA/nostruct-align/1pcfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13482/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.778442 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pch id: 1pch alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pch/nostruct-align/1pch.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pch/nostruct-align/1pch.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pch/nostruct-align/1pch.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16622/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.795410 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pcl id: 1pcl alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pcl/nostruct-align/1pcl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pcl/nostruct-align/1pcl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pcl/nostruct-align/1pcl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17926/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.138428 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pd21 id: 1pd21 alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pd21/nostruct-align/1pd21.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pd21/nostruct-align/1pd21.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pd21/nostruct-align/1pd21.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26063/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.573364 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pda id: 1pda alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pda/nostruct-align/1pda.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pda/nostruct-align/1pda.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pda/nostruct-align/1pda.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6906/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.394409 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pda_1 id: 1pda_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pda_1/nostruct-align/1pda_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pda_1/nostruct-align/1pda_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pda_1/nostruct-align/1pda_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23239/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.504456 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pda_2 id: 1pda_2 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pda_2/nostruct-align/1pda_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pda_2/nostruct-align/1pda_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pda_2/nostruct-align/1pda_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9026/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.667358 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pdc id: 1pdc alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pdc/nostruct-align/1pdc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pdc/nostruct-align/1pdc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pdc/nostruct-align/1pdc.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22375/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.136353 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pdgA id: 1pdgA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pdgA/nostruct-align/1pdgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pdgA/nostruct-align/1pdgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pdgA/nostruct-align/1pdgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9382/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.940369 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pdgC id: 1pdgC alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pdgC/nostruct-align/1pdgC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pdgC/nostruct-align/1pdgC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pdgC/nostruct-align/1pdgC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32701/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.345459 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pdkB id: 1pdkB alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pdkB/nostruct-align/1pdkB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pdkB/nostruct-align/1pdkB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pdkB/nostruct-align/1pdkB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23402/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.750366 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pdnC id: 1pdnC alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pdnC/nostruct-align/1pdnC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pdnC/nostruct-align/1pdnC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pdnC/nostruct-align/1pdnC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19556/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.835449 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pdo id: 1pdo alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pdo/nostruct-align/1pdo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pdo/nostruct-align/1pdo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pdo/nostruct-align/1pdo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7308/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.072327 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pdr id: 1pdr alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pdr/nostruct-align/1pdr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pdr/nostruct-align/1pdr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pdr/nostruct-align/1pdr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27686/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.590454 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pea id: 1pea alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pea/nostruct-align/1pea.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pea/nostruct-align/1pea.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pea/nostruct-align/1pea.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18963/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.795471 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pedA id: 1pedA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pedA/nostruct-align/1pedA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pedA/nostruct-align/1pedA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pedA/nostruct-align/1pedA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8953/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -239.633362 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1peh id: 1peh alignment found: /projects/compbio/experiments/models.97/pdb/1p/1peh/nostruct-align/1peh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1peh/nostruct-align/1peh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1peh/nostruct-align/1peh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24203/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.171387 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pex id: 1pex alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pex/nostruct-align/1pex.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pex/nostruct-align/1pex.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pex/nostruct-align/1pex.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31449/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.325439 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pfiA id: 1pfiA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pfiA/nostruct-align/1pfiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pfiA/nostruct-align/1pfiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pfiA/nostruct-align/1pfiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14695/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.182434 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pfkA id: 1pfkA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pfkA/nostruct-align/1pfkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pfkA/nostruct-align/1pfkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pfkA/nostruct-align/1pfkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17776/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.831421 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pfo id: 1pfo alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pfo/nostruct-align/1pfo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pfo/nostruct-align/1pfo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pfo/nostruct-align/1pfo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19350/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.973328 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pfsA id: 1pfsA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pfsA/nostruct-align/1pfsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pfsA/nostruct-align/1pfsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pfsA/nostruct-align/1pfsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5841/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.144409 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pft id: 1pft alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pft/nostruct-align/1pft.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pft/nostruct-align/1pft.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pft/nostruct-align/1pft.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28605/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.187439 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pgs id: 1pgs alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pgs/nostruct-align/1pgs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pgs/nostruct-align/1pgs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pgs/nostruct-align/1pgs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13743/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.675415 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pgs_1 id: 1pgs_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pgs_1/nostruct-align/1pgs_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pgs_1/nostruct-align/1pgs_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pgs_1/nostruct-align/1pgs_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16624/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.002319 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pgs_2 id: 1pgs_2 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pgs_2/nostruct-align/1pgs_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pgs_2/nostruct-align/1pgs_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pgs_2/nostruct-align/1pgs_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24551/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.175415 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pgtA id: 1pgtA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pgtA/nostruct-align/1pgtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pgtA/nostruct-align/1pgtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pgtA/nostruct-align/1pgtA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3200/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.680420 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1phb id: 1phb alignment found: /projects/compbio/experiments/models.97/pdb/1p/1phb/nostruct-align/1phb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1phb/nostruct-align/1phb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1phb/nostruct-align/1phb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13481/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.632446 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1phd id: 1phd alignment found: /projects/compbio/experiments/models.97/pdb/1p/1phd/nostruct-align/1phd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1phd/nostruct-align/1phd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1phd/nostruct-align/1phd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30407/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.714355 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1phg id: 1phg alignment found: /projects/compbio/experiments/models.97/pdb/1p/1phg/nostruct-align/1phg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1phg/nostruct-align/1phg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1phg/nostruct-align/1phg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8241/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.784424 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1phm id: 1phm alignment found: /projects/compbio/experiments/models.97/pdb/1p/1phm/nostruct-align/1phm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1phm/nostruct-align/1phm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1phm/nostruct-align/1phm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17442/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.806458 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1phnA id: 1phnA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1phnA/nostruct-align/1phnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1phnA/nostruct-align/1phnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1phnA/nostruct-align/1phnA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32569/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.753418 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1phnB id: 1phnB alignment found: /projects/compbio/experiments/models.97/pdb/1p/1phnB/nostruct-align/1phnB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1phnB/nostruct-align/1phnB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1phnB/nostruct-align/1phnB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11002/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.323425 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1php id: 1php alignment found: /projects/compbio/experiments/models.97/pdb/1p/1php/nostruct-align/1php.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1php/nostruct-align/1php.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1php/nostruct-align/1php.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29345/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.863403 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1phr id: 1phr alignment found: /projects/compbio/experiments/models.97/pdb/1p/1phr/nostruct-align/1phr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1phr/nostruct-align/1phr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1phr/nostruct-align/1phr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-130/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.765442 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pht id: 1pht alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pht/nostruct-align/1pht.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pht/nostruct-align/1pht.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pht/nostruct-align/1pht.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-8327/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.022461 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pi2 id: 1pi2 alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pi2/nostruct-align/1pi2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pi2/nostruct-align/1pi2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pi2/nostruct-align/1pi2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19659/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.915344 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pidA id: 1pidA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pidA/nostruct-align/1pidA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pidA/nostruct-align/1pidA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pidA/nostruct-align/1pidA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16968/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.317383 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pidB id: 1pidB alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pidB/nostruct-align/1pidB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pidB/nostruct-align/1pidB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pidB/nostruct-align/1pidB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18724/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.388428 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pii id: 1pii alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pii/nostruct-align/1pii.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pii/nostruct-align/1pii.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pii/nostruct-align/1pii.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16736/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.626404 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pii_1 id: 1pii_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pii_1/nostruct-align/1pii_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pii_1/nostruct-align/1pii_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pii_1/nostruct-align/1pii_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16103/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.372375 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pii_2 id: 1pii_2 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pii_2/nostruct-align/1pii_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pii_2/nostruct-align/1pii_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pii_2/nostruct-align/1pii_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8427/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.081421 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pij id: 1pij alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pij/nostruct-align/1pij.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pij/nostruct-align/1pij.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pij/nostruct-align/1pij.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10316/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.391479 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pil id: 1pil alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pil/nostruct-align/1pil.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pil/nostruct-align/1pil.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pil/nostruct-align/1pil.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1102/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.129333 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pinA id: 1pinA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pinA/nostruct-align/1pinA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pinA/nostruct-align/1pinA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pinA/nostruct-align/1pinA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21617/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.256470 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pioA id: 1pioA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pioA/nostruct-align/1pioA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pioA/nostruct-align/1pioA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pioA/nostruct-align/1pioA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5922/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.860474 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pjcA id: 1pjcA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pjcA/nostruct-align/1pjcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pjcA/nostruct-align/1pjcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pjcA/nostruct-align/1pjcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11355/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -126.769409 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pjr id: 1pjr alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pjr/nostruct-align/1pjr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pjr/nostruct-align/1pjr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pjr/nostruct-align/1pjr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11038/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.785339 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pk4 id: 1pk4 alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pk4/nostruct-align/1pk4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pk4/nostruct-align/1pk4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pk4/nostruct-align/1pk4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30139/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.102417 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pkp id: 1pkp alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pkp/nostruct-align/1pkp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pkp/nostruct-align/1pkp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pkp/nostruct-align/1pkp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16241/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.720337 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pkp_1 id: 1pkp_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pkp_1/nostruct-align/1pkp_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pkp_1/nostruct-align/1pkp_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pkp_1/nostruct-align/1pkp_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23546/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.845398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pkp_2 id: 1pkp_2 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pkp_2/nostruct-align/1pkp_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pkp_2/nostruct-align/1pkp_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pkp_2/nostruct-align/1pkp_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2588/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.326416 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pkyA_1 id: 1pkyA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pkyA_1/nostruct-align/1pkyA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pkyA_1/nostruct-align/1pkyA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pkyA_1/nostruct-align/1pkyA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9802/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.720398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pkyA_2 id: 1pkyA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pkyA_2/nostruct-align/1pkyA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pkyA_2/nostruct-align/1pkyA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pkyA_2/nostruct-align/1pkyA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13530/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.397400 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pkyA_3 id: 1pkyA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pkyA_3/nostruct-align/1pkyA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pkyA_3/nostruct-align/1pkyA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pkyA_3/nostruct-align/1pkyA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32106/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.521362 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1plc id: 1plc alignment found: /projects/compbio/experiments/models.97/pdb/1p/1plc/nostruct-align/1plc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1plc/nostruct-align/1plc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1plc/nostruct-align/1plc.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10086/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.245483 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1plq id: 1plq alignment found: /projects/compbio/experiments/models.97/pdb/1p/1plq/nostruct-align/1plq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1plq/nostruct-align/1plq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1plq/nostruct-align/1plq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11056/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.078430 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1plq_1 id: 1plq_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1plq_1/nostruct-align/1plq_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1plq_1/nostruct-align/1plq_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1plq_1/nostruct-align/1plq_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32161/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.502380 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1plq_2 id: 1plq_2 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1plq_2/nostruct-align/1plq_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1plq_2/nostruct-align/1plq_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1plq_2/nostruct-align/1plq_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28943/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.955444 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1plr id: 1plr alignment found: /projects/compbio/experiments/models.97/pdb/1p/1plr/nostruct-align/1plr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1plr/nostruct-align/1plr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1plr/nostruct-align/1plr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4609/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.084412 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pls id: 1pls alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pls/nostruct-align/1pls.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pls/nostruct-align/1pls.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pls/nostruct-align/1pls.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29367/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.721436 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pmaA id: 1pmaA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pmaA/nostruct-align/1pmaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pmaA/nostruct-align/1pmaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pmaA/nostruct-align/1pmaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4144/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.196350 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pmaP id: 1pmaP alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pmaP/nostruct-align/1pmaP.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pmaP/nostruct-align/1pmaP.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pmaP/nostruct-align/1pmaP.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5597/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.294434 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pmc id: 1pmc alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pmc/nostruct-align/1pmc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pmc/nostruct-align/1pmc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pmc/nostruct-align/1pmc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14738/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.235352 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pmd id: 1pmd alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pmd/nostruct-align/1pmd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pmd/nostruct-align/1pmd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pmd/nostruct-align/1pmd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22397/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.041382 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pmi id: 1pmi alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pmi/nostruct-align/1pmi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pmi/nostruct-align/1pmi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pmi/nostruct-align/1pmi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15036/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.619385 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pmy id: 1pmy alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pmy/nostruct-align/1pmy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pmy/nostruct-align/1pmy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pmy/nostruct-align/1pmy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9444/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.005371 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pnbA id: 1pnbA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pnbA/nostruct-align/1pnbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pnbA/nostruct-align/1pnbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pnbA/nostruct-align/1pnbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10398/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.697388 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pnbB id: 1pnbB alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pnbB/nostruct-align/1pnbB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pnbB/nostruct-align/1pnbB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pnbB/nostruct-align/1pnbB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19440/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.651489 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pne id: 1pne alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pne/nostruct-align/1pne.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pne/nostruct-align/1pne.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pne/nostruct-align/1pne.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23764/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.785400 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pnh id: 1pnh alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pnh/nostruct-align/1pnh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pnh/nostruct-align/1pnh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pnh/nostruct-align/1pnh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12644/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.535461 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pnkA id: 1pnkA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pnkA/nostruct-align/1pnkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pnkA/nostruct-align/1pnkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pnkA/nostruct-align/1pnkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8483/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.374390 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pnkB id: 1pnkB alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pnkB/nostruct-align/1pnkB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pnkB/nostruct-align/1pnkB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pnkB/nostruct-align/1pnkB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7989/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.112427 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pnrA_1 id: 1pnrA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pnrA_1/nostruct-align/1pnrA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pnrA_1/nostruct-align/1pnrA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pnrA_1/nostruct-align/1pnrA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32222/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.553467 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pnrA_2 id: 1pnrA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pnrA_2/nostruct-align/1pnrA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pnrA_2/nostruct-align/1pnrA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pnrA_2/nostruct-align/1pnrA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2378/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.384399 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1poa id: 1poa alignment found: /projects/compbio/experiments/models.97/pdb/1p/1poa/nostruct-align/1poa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1poa/nostruct-align/1poa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1poa/nostruct-align/1poa.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23304/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.515442 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1poc id: 1poc alignment found: /projects/compbio/experiments/models.97/pdb/1p/1poc/nostruct-align/1poc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1poc/nostruct-align/1poc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1poc/nostruct-align/1poc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19594/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.940430 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1poh id: 1poh alignment found: /projects/compbio/experiments/models.97/pdb/1p/1poh/nostruct-align/1poh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1poh/nostruct-align/1poh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1poh/nostruct-align/1poh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15919/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.991394 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1poiA id: 1poiA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1poiA/nostruct-align/1poiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1poiA/nostruct-align/1poiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1poiA/nostruct-align/1poiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23753/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.911438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1poiB id: 1poiB alignment found: /projects/compbio/experiments/models.97/pdb/1p/1poiB/nostruct-align/1poiB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1poiB/nostruct-align/1poiB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1poiB/nostruct-align/1poiB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12916/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.504456 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ponA id: 1ponA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1ponA/nostruct-align/1ponA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1ponA/nostruct-align/1ponA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1ponA/nostruct-align/1ponA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30151/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.703491 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ponB id: 1ponB alignment found: /projects/compbio/experiments/models.97/pdb/1p/1ponB/nostruct-align/1ponB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1ponB/nostruct-align/1ponB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1ponB/nostruct-align/1ponB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30784/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.189331 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pot id: 1pot alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pot/nostruct-align/1pot.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pot/nostruct-align/1pot.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pot/nostruct-align/1pot.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1647/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.599365 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pou id: 1pou alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pou/nostruct-align/1pou.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pou/nostruct-align/1pou.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pou/nostruct-align/1pou.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1948/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.989380 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pov1 id: 1pov1 alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pov1/nostruct-align/1pov1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pov1/nostruct-align/1pov1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pov1/nostruct-align/1pov1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12357/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.589355 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1poxA id: 1poxA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1poxA/nostruct-align/1poxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1poxA/nostruct-align/1poxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1poxA/nostruct-align/1poxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1786/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.382385 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1poxA_1 id: 1poxA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1poxA_1/nostruct-align/1poxA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1poxA_1/nostruct-align/1poxA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1poxA_1/nostruct-align/1poxA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10951/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.317383 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1poxA_2 id: 1poxA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1poxA_2/nostruct-align/1poxA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1poxA_2/nostruct-align/1poxA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1poxA_2/nostruct-align/1poxA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20944/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.405334 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1poxA_3 id: 1poxA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1poxA_3/nostruct-align/1poxA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1poxA_3/nostruct-align/1poxA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1poxA_3/nostruct-align/1poxA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13996/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.073364 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ppbL id: 1ppbL alignment found: /projects/compbio/experiments/models.97/pdb/1p/1ppbL/nostruct-align/1ppbL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1ppbL/nostruct-align/1ppbL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1ppbL/nostruct-align/1ppbL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16460/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.067383 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ppfE id: 1ppfE alignment found: /projects/compbio/experiments/models.97/pdb/1p/1ppfE/nostruct-align/1ppfE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1ppfE/nostruct-align/1ppfE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1ppfE/nostruct-align/1ppfE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16039/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.527466 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ppi_1 id: 1ppi_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1ppi_1/nostruct-align/1ppi_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1ppi_1/nostruct-align/1ppi_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1ppi_1/nostruct-align/1ppi_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25145/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.867432 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ppi_2 id: 1ppi_2 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1ppi_2/nostruct-align/1ppi_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1ppi_2/nostruct-align/1ppi_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1ppi_2/nostruct-align/1ppi_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8083/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.465454 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ppn id: 1ppn alignment found: /projects/compbio/experiments/models.97/pdb/1p/1ppn/nostruct-align/1ppn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1ppn/nostruct-align/1ppn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1ppn/nostruct-align/1ppn.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22954/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.480408 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pprM id: 1pprM alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pprM/nostruct-align/1pprM.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pprM/nostruct-align/1pprM.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pprM/nostruct-align/1pprM.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30391/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.249329 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ppt id: 1ppt alignment found: /projects/compbio/experiments/models.97/pdb/1p/1ppt/nostruct-align/1ppt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1ppt/nostruct-align/1ppt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1ppt/nostruct-align/1ppt.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13338/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.639404 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1prcC id: 1prcC alignment found: /projects/compbio/experiments/models.97/pdb/1p/1prcC/nostruct-align/1prcC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1prcC/nostruct-align/1prcC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1prcC/nostruct-align/1prcC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16557/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.776367 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1prcH_1 id: 1prcH_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1prcH_1/nostruct-align/1prcH_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1prcH_1/nostruct-align/1prcH_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1prcH_1/nostruct-align/1prcH_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27833/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.475403 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1prc_1l1 id: 1prc_1l1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1prc_1l1/nostruct-align/1prc_1l1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1prc_1l1/nostruct-align/1prc_1l1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1prc_1l1/nostruct-align/1prc_1l1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18304/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.824341 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1preA id: 1preA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1preA/nostruct-align/1preA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1preA/nostruct-align/1preA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1preA/nostruct-align/1preA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26274/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.801392 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1preB id: 1preB alignment found: /projects/compbio/experiments/models.97/pdb/1p/1preB/nostruct-align/1preB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1preB/nostruct-align/1preB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1preB/nostruct-align/1preB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25371/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.810425 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1prhA_1 id: 1prhA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1prhA_1/nostruct-align/1prhA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1prhA_1/nostruct-align/1prhA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1prhA_1/nostruct-align/1prhA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32089/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.281372 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1prhA_2 id: 1prhA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1prhA_2/nostruct-align/1prhA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1prhA_2/nostruct-align/1prhA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1prhA_2/nostruct-align/1prhA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25632/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.337463 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1prn id: 1prn alignment found: /projects/compbio/experiments/models.97/pdb/1p/1prn/nostruct-align/1prn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1prn/nostruct-align/1prn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1prn/nostruct-align/1prn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1613/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.785400 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1prr_1 id: 1prr_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1prr_1/nostruct-align/1prr_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1prr_1/nostruct-align/1prr_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1prr_1/nostruct-align/1prr_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21641/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.420410 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1prr_2 id: 1prr_2 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1prr_2/nostruct-align/1prr_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1prr_2/nostruct-align/1prr_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1prr_2/nostruct-align/1prr_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6921/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.436401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1prs id: 1prs alignment found: /projects/compbio/experiments/models.97/pdb/1p/1prs/nostruct-align/1prs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1prs/nostruct-align/1prs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1prs/nostruct-align/1prs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.059387 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1prtA id: 1prtA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1prtA/nostruct-align/1prtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1prtA/nostruct-align/1prtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1prtA/nostruct-align/1prtA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-4755/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.973328 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1prtB_1 id: 1prtB_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1prtB_1/nostruct-align/1prtB_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1prtB_1/nostruct-align/1prtB_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1prtB_1/nostruct-align/1prtB_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28549/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.386353 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1prtB_2 id: 1prtB_2 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1prtB_2/nostruct-align/1prtB_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1prtB_2/nostruct-align/1prtB_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1prtB_2/nostruct-align/1prtB_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23671/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.814331 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1prtD id: 1prtD alignment found: /projects/compbio/experiments/models.97/pdb/1p/1prtD/nostruct-align/1prtD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1prtD/nostruct-align/1prtD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1prtD/nostruct-align/1prtD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16196/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.020447 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1prtF id: 1prtF alignment found: /projects/compbio/experiments/models.97/pdb/1p/1prtF/nostruct-align/1prtF.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1prtF/nostruct-align/1prtF.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1prtF/nostruct-align/1prtF.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17296/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.603455 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pru id: 1pru alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pru/nostruct-align/1pru.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pru/nostruct-align/1pru.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pru/nostruct-align/1pru.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30340/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.767334 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1prxA id: 1prxA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1prxA/nostruct-align/1prxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1prxA/nostruct-align/1prxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1prxA/nostruct-align/1prxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2731/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.589478 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1prxB id: 1prxB alignment found: /projects/compbio/experiments/models.97/pdb/1p/1prxB/nostruct-align/1prxB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1prxB/nostruct-align/1prxB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1prxB/nostruct-align/1prxB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30193/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.661377 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ps1A id: 1ps1A alignment found: /projects/compbio/experiments/models.97/pdb/1p/1ps1A/nostruct-align/1ps1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1ps1A/nostruct-align/1ps1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1ps1A/nostruct-align/1ps1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6623/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.006348 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pscA id: 1pscA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pscA/nostruct-align/1pscA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pscA/nostruct-align/1pscA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pscA/nostruct-align/1pscA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25799/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.942383 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1psdA id: 1psdA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1psdA/nostruct-align/1psdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1psdA/nostruct-align/1psdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1psdA/nostruct-align/1psdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11013/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -23.961426 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1psdA_1 id: 1psdA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1psdA_1/nostruct-align/1psdA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1psdA_1/nostruct-align/1psdA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1psdA_1/nostruct-align/1psdA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7410/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.755432 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1psdA_2 id: 1psdA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1psdA_2/nostruct-align/1psdA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1psdA_2/nostruct-align/1psdA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1psdA_2/nostruct-align/1psdA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21587/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -24.283386 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1psdA_3 id: 1psdA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1psdA_3/nostruct-align/1psdA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1psdA_3/nostruct-align/1psdA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1psdA_3/nostruct-align/1psdA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19341/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.855347 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pse id: 1pse alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pse/nostruct-align/1pse.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pse/nostruct-align/1pse.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pse/nostruct-align/1pse.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32456/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.635437 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1psm id: 1psm alignment found: /projects/compbio/experiments/models.97/pdb/1p/1psm/nostruct-align/1psm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1psm/nostruct-align/1psm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1psm/nostruct-align/1psm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5781/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.819458 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pspA_1 id: 1pspA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pspA_1/nostruct-align/1pspA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pspA_1/nostruct-align/1pspA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pspA_1/nostruct-align/1pspA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19589/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.080444 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pspA_2 id: 1pspA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pspA_2/nostruct-align/1pspA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pspA_2/nostruct-align/1pspA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pspA_2/nostruct-align/1pspA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8601/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.095398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1psrA id: 1psrA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1psrA/nostruct-align/1psrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1psrA/nostruct-align/1psrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1psrA/nostruct-align/1psrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4888/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.652344 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pszA id: 1pszA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pszA/nostruct-align/1pszA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pszA/nostruct-align/1pszA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pszA/nostruct-align/1pszA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2788/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.432495 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pta id: 1pta alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pta/nostruct-align/1pta.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pta/nostruct-align/1pta.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pta/nostruct-align/1pta.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3255/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.476440 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ptf id: 1ptf alignment found: /projects/compbio/experiments/models.97/pdb/1p/1ptf/nostruct-align/1ptf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1ptf/nostruct-align/1ptf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1ptf/nostruct-align/1ptf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27929/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.335449 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ptq id: 1ptq alignment found: /projects/compbio/experiments/models.97/pdb/1p/1ptq/nostruct-align/1ptq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1ptq/nostruct-align/1ptq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1ptq/nostruct-align/1ptq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10391/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.296387 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ptvA id: 1ptvA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1ptvA/nostruct-align/1ptvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1ptvA/nostruct-align/1ptvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1ptvA/nostruct-align/1ptvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-613/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.580444 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pty id: 1pty alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pty/nostruct-align/1pty.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pty/nostruct-align/1pty.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pty/nostruct-align/1pty.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-773/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.443481 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1puc id: 1puc alignment found: /projects/compbio/experiments/models.97/pdb/1p/1puc/nostruct-align/1puc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1puc/nostruct-align/1puc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1puc/nostruct-align/1puc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9226/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.932495 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pud id: 1pud alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pud/nostruct-align/1pud.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pud/nostruct-align/1pud.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pud/nostruct-align/1pud.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20818/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.766357 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1put id: 1put alignment found: /projects/compbio/experiments/models.97/pdb/1p/1put/nostruct-align/1put.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1put/nostruct-align/1put.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1put/nostruct-align/1put.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6552/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.976318 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pvc1 id: 1pvc1 alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pvc1/nostruct-align/1pvc1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pvc1/nostruct-align/1pvc1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pvc1/nostruct-align/1pvc1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17215/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.037354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pvc2 id: 1pvc2 alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pvc2/nostruct-align/1pvc2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pvc2/nostruct-align/1pvc2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pvc2/nostruct-align/1pvc2.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-8553/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.574463 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pvc3 id: 1pvc3 alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pvc3/nostruct-align/1pvc3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pvc3/nostruct-align/1pvc3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pvc3/nostruct-align/1pvc3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24791/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.155396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pvc4 id: 1pvc4 alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pvc4/nostruct-align/1pvc4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pvc4/nostruct-align/1pvc4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pvc4/nostruct-align/1pvc4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8585/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.948364 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pvdA_2 id: 1pvdA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pvdA_2/nostruct-align/1pvdA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pvdA_2/nostruct-align/1pvdA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pvdA_2/nostruct-align/1pvdA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28664/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.587402 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pvdA_3 id: 1pvdA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pvdA_3/nostruct-align/1pvdA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pvdA_3/nostruct-align/1pvdA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pvdA_3/nostruct-align/1pvdA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30766/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.752380 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pvl id: 1pvl alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pvl/nostruct-align/1pvl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pvl/nostruct-align/1pvl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pvl/nostruct-align/1pvl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19056/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.002441 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pvuA id: 1pvuA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pvuA/nostruct-align/1pvuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pvuA/nostruct-align/1pvuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pvuA/nostruct-align/1pvuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-705/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.466370 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pvxA id: 1pvxA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pvxA/nostruct-align/1pvxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pvxA/nostruct-align/1pvxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pvxA/nostruct-align/1pvxA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17833/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.132324 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pxtA_1 id: 1pxtA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pxtA_1/nostruct-align/1pxtA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pxtA_1/nostruct-align/1pxtA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pxtA_1/nostruct-align/1pxtA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13056/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.502380 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pxtA_2 id: 1pxtA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pxtA_2/nostruct-align/1pxtA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pxtA_2/nostruct-align/1pxtA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pxtA_2/nostruct-align/1pxtA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23942/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.074402 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pxtB id: 1pxtB alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pxtB/nostruct-align/1pxtB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pxtB/nostruct-align/1pxtB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pxtB/nostruct-align/1pxtB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-15720/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.737427 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pyaA id: 1pyaA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pyaA/nostruct-align/1pyaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pyaA/nostruct-align/1pyaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pyaA/nostruct-align/1pyaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24586/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.621460 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pyaB id: 1pyaB alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pyaB/nostruct-align/1pyaB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pyaB/nostruct-align/1pyaB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pyaB/nostruct-align/1pyaB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24431/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.075378 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pya_1a1 id: 1pya_1a1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pya_1a1/nostruct-align/1pya_1a1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pya_1a1/nostruct-align/1pya_1a1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pya_1a1/nostruct-align/1pya_1a1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24023/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.577454 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pyc id: 1pyc alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pyc/nostruct-align/1pyc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pyc/nostruct-align/1pyc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pyc/nostruct-align/1pyc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18229/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.869385 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pyiA id: 1pyiA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pyiA/nostruct-align/1pyiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pyiA/nostruct-align/1pyiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pyiA/nostruct-align/1pyiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23122/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.076416 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pyiA_1 id: 1pyiA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pyiA_1/nostruct-align/1pyiA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pyiA_1/nostruct-align/1pyiA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pyiA_1/nostruct-align/1pyiA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24583/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.818420 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pyi_1a1 id: 1pyi_1a1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pyi_1a1/nostruct-align/1pyi_1a1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pyi_1a1/nostruct-align/1pyi_1a1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pyi_1a1/nostruct-align/1pyi_1a1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7182/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.066406 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pymA id: 1pymA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pymA/nostruct-align/1pymA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pymA/nostruct-align/1pymA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pymA/nostruct-align/1pymA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17480/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.040405 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pyp id: 1pyp alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pyp/nostruct-align/1pyp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pyp/nostruct-align/1pyp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pyp/nostruct-align/1pyp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10614/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.775391 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pysA id: 1pysA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pysA/nostruct-align/1pysA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pysA/nostruct-align/1pysA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pysA/nostruct-align/1pysA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14894/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.910400 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pysB id: 1pysB alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pysB/nostruct-align/1pysB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pysB/nostruct-align/1pysB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pysB/nostruct-align/1pysB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31661/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.608459 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1pytA id: 1pytA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pytA/nostruct-align/1pytA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pytA/nostruct-align/1pytA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pytA/nostruct-align/1pytA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16143/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.808350 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qa1A id: 1qa1A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qa1A/nostruct-align/1qa1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qa1A/nostruct-align/1qa1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qa1A/nostruct-align/1qa1A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31080/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.663452 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qa4A id: 1qa4A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qa4A/nostruct-align/1qa4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qa4A/nostruct-align/1qa4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qa4A/nostruct-align/1qa4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16539/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.853394 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qa5A id: 1qa5A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qa5A/nostruct-align/1qa5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qa5A/nostruct-align/1qa5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qa5A/nostruct-align/1qa5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16351/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.853394 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qa6A id: 1qa6A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qa6A/nostruct-align/1qa6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qa6A/nostruct-align/1qa6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qa6A/nostruct-align/1qa6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32278/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.730469 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qa7B id: 1qa7B alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qa7B/nostruct-align/1qa7B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qa7B/nostruct-align/1qa7B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qa7B/nostruct-align/1qa7B.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-16231/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.424377 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qa9A id: 1qa9A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qa9A/nostruct-align/1qa9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qa9A/nostruct-align/1qa9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qa9A/nostruct-align/1qa9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28445/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.734497 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qadA id: 1qadA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qadA/nostruct-align/1qadA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qadA/nostruct-align/1qadA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qadA/nostruct-align/1qadA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3686/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.740479 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qaeA id: 1qaeA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qaeA/nostruct-align/1qaeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qaeA/nostruct-align/1qaeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qaeA/nostruct-align/1qaeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25891/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.597412 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qagA id: 1qagA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qagA/nostruct-align/1qagA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qagA/nostruct-align/1qagA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qagA/nostruct-align/1qagA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6372/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.212402 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qapA id: 1qapA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qapA/nostruct-align/1qapA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qapA/nostruct-align/1qapA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qapA/nostruct-align/1qapA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9943/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.322388 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qatB id: 1qatB alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qatB/nostruct-align/1qatB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qatB/nostruct-align/1qatB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qatB/nostruct-align/1qatB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15515/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.527466 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qauA id: 1qauA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qauA/nostruct-align/1qauA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qauA/nostruct-align/1qauA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qauA/nostruct-align/1qauA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6614/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.090454 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qawF id: 1qawF alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qawF/nostruct-align/1qawF.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qawF/nostruct-align/1qawF.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qawF/nostruct-align/1qawF.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-14571/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.630371 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qaxA id: 1qaxA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qaxA/nostruct-align/1qaxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qaxA/nostruct-align/1qaxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qaxA/nostruct-align/1qaxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28528/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.740479 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qazA id: 1qazA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qazA/nostruct-align/1qazA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qazA/nostruct-align/1qazA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qazA/nostruct-align/1qazA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7655/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.916382 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qb2A id: 1qb2A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qb2A/nostruct-align/1qb2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qb2A/nostruct-align/1qb2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qb2A/nostruct-align/1qb2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27120/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.111328 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qb7A id: 1qb7A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qb7A/nostruct-align/1qb7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qb7A/nostruct-align/1qb7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qb7A/nostruct-align/1qb7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11526/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.525391 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qba id: 1qba alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qba/nostruct-align/1qba.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qba/nostruct-align/1qba.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qba/nostruct-align/1qba.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32450/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.755371 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qbeA id: 1qbeA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qbeA/nostruct-align/1qbeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qbeA/nostruct-align/1qbeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qbeA/nostruct-align/1qbeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19865/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.472351 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qbhA id: 1qbhA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qbhA/nostruct-align/1qbhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qbhA/nostruct-align/1qbhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qbhA/nostruct-align/1qbhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-851/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.043335 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qbjA id: 1qbjA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qbjA/nostruct-align/1qbjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qbjA/nostruct-align/1qbjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qbjA/nostruct-align/1qbjA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14523/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.482422 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qbkB id: 1qbkB alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qbkB/nostruct-align/1qbkB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qbkB/nostruct-align/1qbkB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qbkB/nostruct-align/1qbkB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9121/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.732422 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qbzA id: 1qbzA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qbzA/nostruct-align/1qbzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qbzA/nostruct-align/1qbzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qbzA/nostruct-align/1qbzA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29851/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.454468 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qbzC id: 1qbzC alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qbzC/nostruct-align/1qbzC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qbzC/nostruct-align/1qbzC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qbzC/nostruct-align/1qbzC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23110/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.893311 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qc7A id: 1qc7A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qc7A/nostruct-align/1qc7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qc7A/nostruct-align/1qc7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qc7A/nostruct-align/1qc7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3410/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.547424 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qckA id: 1qckA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qckA/nostruct-align/1qckA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qckA/nostruct-align/1qckA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qckA/nostruct-align/1qckA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20815/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.863403 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qcnA id: 1qcnA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qcnA/nostruct-align/1qcnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qcnA/nostruct-align/1qcnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qcnA/nostruct-align/1qcnA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32614/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.361389 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qcrA id: 1qcrA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qcrA/nostruct-align/1qcrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qcrA/nostruct-align/1qcrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qcrA/nostruct-align/1qcrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28296/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.967407 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qcrC id: 1qcrC alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qcrC/nostruct-align/1qcrC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qcrC/nostruct-align/1qcrC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qcrC/nostruct-align/1qcrC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8999/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.986328 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qcrD id: 1qcrD alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qcrD/nostruct-align/1qcrD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qcrD/nostruct-align/1qcrD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qcrD/nostruct-align/1qcrD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5536/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.137329 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qcrF id: 1qcrF alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qcrF/nostruct-align/1qcrF.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qcrF/nostruct-align/1qcrF.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qcrF/nostruct-align/1qcrF.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10319/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.190308 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qcrG id: 1qcrG alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qcrG/nostruct-align/1qcrG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qcrG/nostruct-align/1qcrG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qcrG/nostruct-align/1qcrG.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11750/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.562378 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qcrH id: 1qcrH alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qcrH/nostruct-align/1qcrH.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qcrH/nostruct-align/1qcrH.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qcrH/nostruct-align/1qcrH.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18159/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.652466 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qcrJ id: 1qcrJ alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qcrJ/nostruct-align/1qcrJ.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qcrJ/nostruct-align/1qcrJ.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qcrJ/nostruct-align/1qcrJ.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7709/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.062378 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qcrK id: 1qcrK alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qcrK/nostruct-align/1qcrK.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qcrK/nostruct-align/1qcrK.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qcrK/nostruct-align/1qcrK.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28978/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.369446 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qcsA id: 1qcsA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qcsA/nostruct-align/1qcsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qcsA/nostruct-align/1qcsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qcsA/nostruct-align/1qcsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2044/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.518433 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qcxA id: 1qcxA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qcxA/nostruct-align/1qcxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qcxA/nostruct-align/1qcxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qcxA/nostruct-align/1qcxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20881/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.636353 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qczA id: 1qczA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qczA/nostruct-align/1qczA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qczA/nostruct-align/1qczA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qczA/nostruct-align/1qczA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13359/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.475342 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qd1A id: 1qd1A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qd1A/nostruct-align/1qd1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qd1A/nostruct-align/1qd1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qd1A/nostruct-align/1qd1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12306/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.870422 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qd5A id: 1qd5A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qd5A/nostruct-align/1qd5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qd5A/nostruct-align/1qd5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qd5A/nostruct-align/1qd5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19017/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.358398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qd9A id: 1qd9A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qd9A/nostruct-align/1qd9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qd9A/nostruct-align/1qd9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qd9A/nostruct-align/1qd9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17658/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.215332 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qdbA id: 1qdbA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qdbA/nostruct-align/1qdbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qdbA/nostruct-align/1qdbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qdbA/nostruct-align/1qdbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14270/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.452454 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qddA id: 1qddA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qddA/nostruct-align/1qddA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qddA/nostruct-align/1qddA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qddA/nostruct-align/1qddA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10705/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.745361 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qdlA id: 1qdlA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qdlA/nostruct-align/1qdlA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qdlA/nostruct-align/1qdlA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qdlA/nostruct-align/1qdlA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10803/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.897461 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qdlB id: 1qdlB alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qdlB/nostruct-align/1qdlB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qdlB/nostruct-align/1qdlB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qdlB/nostruct-align/1qdlB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25476/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.572388 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qexA id: 1qexA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qexA/nostruct-align/1qexA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qexA/nostruct-align/1qexA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qexA/nostruct-align/1qexA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25748/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.043396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qeyA id: 1qeyA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qeyA/nostruct-align/1qeyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qeyA/nostruct-align/1qeyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qeyA/nostruct-align/1qeyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21359/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.258423 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qf5A id: 1qf5A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qf5A/nostruct-align/1qf5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qf5A/nostruct-align/1qf5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qf5A/nostruct-align/1qf5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15188/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.739441 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qf6A id: 1qf6A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qf6A/nostruct-align/1qf6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qf6A/nostruct-align/1qf6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qf6A/nostruct-align/1qf6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23634/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.528320 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qf8A id: 1qf8A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qf8A/nostruct-align/1qf8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qf8A/nostruct-align/1qf8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qf8A/nostruct-align/1qf8A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8147/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.492371 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qfdA id: 1qfdA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qfdA/nostruct-align/1qfdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qfdA/nostruct-align/1qfdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qfdA/nostruct-align/1qfdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21527/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.006470 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qfeA id: 1qfeA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qfeA/nostruct-align/1qfeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qfeA/nostruct-align/1qfeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qfeA/nostruct-align/1qfeA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8744/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.774414 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qfhA id: 1qfhA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qfhA/nostruct-align/1qfhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qfhA/nostruct-align/1qfhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qfhA/nostruct-align/1qfhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21915/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.304382 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qfjA id: 1qfjA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qfjA/nostruct-align/1qfjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qfjA/nostruct-align/1qfjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qfjA/nostruct-align/1qfjA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24119/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.655396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qfmA id: 1qfmA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qfmA/nostruct-align/1qfmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qfmA/nostruct-align/1qfmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qfmA/nostruct-align/1qfmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16634/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.489502 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qfnA id: 1qfnA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qfnA/nostruct-align/1qfnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qfnA/nostruct-align/1qfnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qfnA/nostruct-align/1qfnA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31957/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.165405 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qfoA id: 1qfoA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qfoA/nostruct-align/1qfoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qfoA/nostruct-align/1qfoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qfoA/nostruct-align/1qfoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11073/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.936401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qfoC id: 1qfoC alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qfoC/nostruct-align/1qfoC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qfoC/nostruct-align/1qfoC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qfoC/nostruct-align/1qfoC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5976/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.527466 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qfqB id: 1qfqB alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qfqB/nostruct-align/1qfqB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qfqB/nostruct-align/1qfqB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qfqB/nostruct-align/1qfqB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18401/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.681396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qftA id: 1qftA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qftA/nostruct-align/1qftA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qftA/nostruct-align/1qftA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qftA/nostruct-align/1qftA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3047/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.382446 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qfxA id: 1qfxA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qfxA/nostruct-align/1qfxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qfxA/nostruct-align/1qfxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qfxA/nostruct-align/1qfxA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1806/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.266357 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qg0A id: 1qg0A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qg0A/nostruct-align/1qg0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qg0A/nostruct-align/1qg0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qg0A/nostruct-align/1qg0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15735/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.870361 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qg3A id: 1qg3A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qg3A/nostruct-align/1qg3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qg3A/nostruct-align/1qg3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qg3A/nostruct-align/1qg3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18373/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.648315 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qg8A id: 1qg8A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qg8A/nostruct-align/1qg8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qg8A/nostruct-align/1qg8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qg8A/nostruct-align/1qg8A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19624/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.186401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qgbA id: 1qgbA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qgbA/nostruct-align/1qgbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qgbA/nostruct-align/1qgbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qgbA/nostruct-align/1qgbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9529/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.896362 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qghA id: 1qghA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qghA/nostruct-align/1qghA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qghA/nostruct-align/1qghA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qghA/nostruct-align/1qghA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5569/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.369385 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qgiA id: 1qgiA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qgiA/nostruct-align/1qgiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qgiA/nostruct-align/1qgiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qgiA/nostruct-align/1qgiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10802/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.177368 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qgkB id: 1qgkB alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qgkB/nostruct-align/1qgkB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qgkB/nostruct-align/1qgkB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qgkB/nostruct-align/1qgkB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5599/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -19.948364 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qgoA id: 1qgoA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qgoA/nostruct-align/1qgoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qgoA/nostruct-align/1qgoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qgoA/nostruct-align/1qgoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6066/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.081421 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qgrA id: 1qgrA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qgrA/nostruct-align/1qgrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qgrA/nostruct-align/1qgrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qgrA/nostruct-align/1qgrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26634/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.182373 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qgtA id: 1qgtA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qgtA/nostruct-align/1qgtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qgtA/nostruct-align/1qgtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qgtA/nostruct-align/1qgtA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23356/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.932373 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qguA id: 1qguA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qguA/nostruct-align/1qguA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qguA/nostruct-align/1qguA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qguA/nostruct-align/1qguA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3788/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.425354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qguB id: 1qguB alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qguB/nostruct-align/1qguB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qguB/nostruct-align/1qguB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qguB/nostruct-align/1qguB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32364/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.658447 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qgvA id: 1qgvA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qgvA/nostruct-align/1qgvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qgvA/nostruct-align/1qgvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qgvA/nostruct-align/1qgvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10635/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.561401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qgwA id: 1qgwA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qgwA/nostruct-align/1qgwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qgwA/nostruct-align/1qgwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qgwA/nostruct-align/1qgwA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15149/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.335449 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qgwC id: 1qgwC alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qgwC/nostruct-align/1qgwC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qgwC/nostruct-align/1qgwC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qgwC/nostruct-align/1qgwC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25233/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.954407 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qgxA id: 1qgxA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qgxA/nostruct-align/1qgxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qgxA/nostruct-align/1qgxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qgxA/nostruct-align/1qgxA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2811/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.260376 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qh3A id: 1qh3A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qh3A/nostruct-align/1qh3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qh3A/nostruct-align/1qh3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qh3A/nostruct-align/1qh3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14873/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.708374 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qh4A id: 1qh4A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qh4A/nostruct-align/1qh4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qh4A/nostruct-align/1qh4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qh4A/nostruct-align/1qh4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10784/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.551392 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qh5A id: 1qh5A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qh5A/nostruct-align/1qh5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qh5A/nostruct-align/1qh5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qh5A/nostruct-align/1qh5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3988/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.709473 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qh8A id: 1qh8A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qh8A/nostruct-align/1qh8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qh8A/nostruct-align/1qh8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qh8A/nostruct-align/1qh8A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3863/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.850464 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qh8B id: 1qh8B alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qh8B/nostruct-align/1qh8B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qh8B/nostruct-align/1qh8B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qh8B/nostruct-align/1qh8B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18647/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.028442 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qhaA id: 1qhaA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qhaA/nostruct-align/1qhaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qhaA/nostruct-align/1qhaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qhaA/nostruct-align/1qhaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15540/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.830444 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qhfA id: 1qhfA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qhfA/nostruct-align/1qhfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qhfA/nostruct-align/1qhfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qhfA/nostruct-align/1qhfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9555/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.973389 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qhiA id: 1qhiA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qhiA/nostruct-align/1qhiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qhiA/nostruct-align/1qhiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qhiA/nostruct-align/1qhiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12376/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.070374 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qhkA id: 1qhkA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qhkA/nostruct-align/1qhkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qhkA/nostruct-align/1qhkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qhkA/nostruct-align/1qhkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29441/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.067383 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qhlA id: 1qhlA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qhlA/nostruct-align/1qhlA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qhlA/nostruct-align/1qhlA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qhlA/nostruct-align/1qhlA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10431/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.033447 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qhsA id: 1qhsA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qhsA/nostruct-align/1qhsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qhsA/nostruct-align/1qhsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qhsA/nostruct-align/1qhsA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19021/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.118408 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qhuA id: 1qhuA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qhuA/nostruct-align/1qhuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qhuA/nostruct-align/1qhuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qhuA/nostruct-align/1qhuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27722/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.031372 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qhvA id: 1qhvA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qhvA/nostruct-align/1qhvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qhvA/nostruct-align/1qhvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qhvA/nostruct-align/1qhvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12166/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.966309 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qi7A id: 1qi7A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qi7A/nostruct-align/1qi7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qi7A/nostruct-align/1qi7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qi7A/nostruct-align/1qi7A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15575/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.233398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qipA id: 1qipA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qipA/nostruct-align/1qipA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qipA/nostruct-align/1qipA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qipA/nostruct-align/1qipA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6779/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.612427 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qj2A id: 1qj2A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qj2A/nostruct-align/1qj2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qj2A/nostruct-align/1qj2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qj2A/nostruct-align/1qj2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6192/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.442444 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qj2B id: 1qj2B alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qj2B/nostruct-align/1qj2B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qj2B/nostruct-align/1qj2B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qj2B/nostruct-align/1qj2B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4878/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.139343 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qj2C id: 1qj2C alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qj2C/nostruct-align/1qj2C.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qj2C/nostruct-align/1qj2C.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qj2C/nostruct-align/1qj2C.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30114/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.965393 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qj4A id: 1qj4A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qj4A/nostruct-align/1qj4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qj4A/nostruct-align/1qj4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qj4A/nostruct-align/1qj4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21619/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.975342 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qj8A id: 1qj8A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qj8A/nostruct-align/1qj8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qj8A/nostruct-align/1qj8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qj8A/nostruct-align/1qj8A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29656/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.114380 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qjaA id: 1qjaA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qjaA/nostruct-align/1qjaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qjaA/nostruct-align/1qjaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qjaA/nostruct-align/1qjaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25170/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.896362 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qjdA id: 1qjdA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qjdA/nostruct-align/1qjdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qjdA/nostruct-align/1qjdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qjdA/nostruct-align/1qjdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17578/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -29.663452 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qjkA id: 1qjkA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qjkA/nostruct-align/1qjkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qjkA/nostruct-align/1qjkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qjkA/nostruct-align/1qjkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12559/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.110413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qjwA id: 1qjwA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qjwA/nostruct-align/1qjwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qjwA/nostruct-align/1qjwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qjwA/nostruct-align/1qjwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30979/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.302490 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qk3A id: 1qk3A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qk3A/nostruct-align/1qk3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qk3A/nostruct-align/1qk3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qk3A/nostruct-align/1qk3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2479/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.236328 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qk4A id: 1qk4A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qk4A/nostruct-align/1qk4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qk4A/nostruct-align/1qk4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qk4A/nostruct-align/1qk4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17034/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.471375 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qk6A id: 1qk6A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qk6A/nostruct-align/1qk6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qk6A/nostruct-align/1qk6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qk6A/nostruct-align/1qk6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16735/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.653442 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qk7A id: 1qk7A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qk7A/nostruct-align/1qk7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qk7A/nostruct-align/1qk7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qk7A/nostruct-align/1qk7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23633/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.320435 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qk9A id: 1qk9A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qk9A/nostruct-align/1qk9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qk9A/nostruct-align/1qk9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qk9A/nostruct-align/1qk9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2188/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.327393 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qkfA id: 1qkfA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qkfA/nostruct-align/1qkfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qkfA/nostruct-align/1qkfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qkfA/nostruct-align/1qkfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2355/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.585449 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qklA id: 1qklA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qklA/nostruct-align/1qklA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qklA/nostruct-align/1qklA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qklA/nostruct-align/1qklA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19041/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.533325 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qksA id: 1qksA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qksA/nostruct-align/1qksA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qksA/nostruct-align/1qksA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qksA/nostruct-align/1qksA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12577/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.402405 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ql1A id: 1ql1A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1ql1A/nostruct-align/1ql1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1ql1A/nostruct-align/1ql1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1ql1A/nostruct-align/1ql1A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1957/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.182434 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qlaA id: 1qlaA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qlaA/nostruct-align/1qlaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qlaA/nostruct-align/1qlaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qlaA/nostruct-align/1qlaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11719/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -23.544373 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qlaB id: 1qlaB alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qlaB/nostruct-align/1qlaB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qlaB/nostruct-align/1qlaB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qlaB/nostruct-align/1qlaB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19591/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.961426 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qlaC id: 1qlaC alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qlaC/nostruct-align/1qlaC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qlaC/nostruct-align/1qlaC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qlaC/nostruct-align/1qlaC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7423/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.010498 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qldA id: 1qldA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qldA/nostruct-align/1qldA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qldA/nostruct-align/1qldA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qldA/nostruct-align/1qldA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29791/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.134399 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qleD id: 1qleD alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qleD/nostruct-align/1qleD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qleD/nostruct-align/1qleD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qleD/nostruct-align/1qleD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17460/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.535339 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qlgA id: 1qlgA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qlgA/nostruct-align/1qlgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qlgA/nostruct-align/1qlgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qlgA/nostruct-align/1qlgA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18712/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.801331 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qli id: 1qli alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qli/nostruct-align/1qli.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qli/nostruct-align/1qli.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qli/nostruct-align/1qli.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20907/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.268311 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qlmA id: 1qlmA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qlmA/nostruct-align/1qlmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qlmA/nostruct-align/1qlmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qlmA/nostruct-align/1qlmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11910/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.141357 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qloA id: 1qloA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qloA/nostruct-align/1qloA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qloA/nostruct-align/1qloA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qloA/nostruct-align/1qloA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14746/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.436401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qltA id: 1qltA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qltA/nostruct-align/1qltA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qltA/nostruct-align/1qltA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qltA/nostruct-align/1qltA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25162/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.066467 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qlwA id: 1qlwA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qlwA/nostruct-align/1qlwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qlwA/nostruct-align/1qlwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qlwA/nostruct-align/1qlwA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31474/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.495422 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qlyA id: 1qlyA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qlyA/nostruct-align/1qlyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qlyA/nostruct-align/1qlyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qlyA/nostruct-align/1qlyA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9890/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.143433 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qlzA id: 1qlzA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qlzA/nostruct-align/1qlzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qlzA/nostruct-align/1qlzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qlzA/nostruct-align/1qlzA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14494/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.676392 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qm1A id: 1qm1A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qm1A/nostruct-align/1qm1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qm1A/nostruct-align/1qm1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qm1A/nostruct-align/1qm1A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28862/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.676392 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qm3A id: 1qm3A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qm3A/nostruct-align/1qm3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qm3A/nostruct-align/1qm3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qm3A/nostruct-align/1qm3A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9992/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.676392 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qmgA id: 1qmgA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qmgA/nostruct-align/1qmgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qmgA/nostruct-align/1qmgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qmgA/nostruct-align/1qmgA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10857/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.629395 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qmhA id: 1qmhA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qmhA/nostruct-align/1qmhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qmhA/nostruct-align/1qmhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qmhA/nostruct-align/1qmhA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23870/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.974365 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qmmA id: 1qmmA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qmmA/nostruct-align/1qmmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qmmA/nostruct-align/1qmmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qmmA/nostruct-align/1qmmA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16091/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.855408 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qmpA id: 1qmpA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qmpA/nostruct-align/1qmpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qmpA/nostruct-align/1qmpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qmpA/nostruct-align/1qmpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25241/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.424438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qnaA id: 1qnaA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qnaA/nostruct-align/1qnaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qnaA/nostruct-align/1qnaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qnaA/nostruct-align/1qnaA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28100/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.424377 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qnf id: 1qnf alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qnf/nostruct-align/1qnf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qnf/nostruct-align/1qnf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qnf/nostruct-align/1qnf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8611/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.703369 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qnjA id: 1qnjA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qnjA/nostruct-align/1qnjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qnjA/nostruct-align/1qnjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qnjA/nostruct-align/1qnjA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10040/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.854492 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qo0D id: 1qo0D alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qo0D/nostruct-align/1qo0D.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qo0D/nostruct-align/1qo0D.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qo0D/nostruct-align/1qo0D.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9254/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.255432 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qo3C id: 1qo3C alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qo3C/nostruct-align/1qo3C.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qo3C/nostruct-align/1qo3C.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qo3C/nostruct-align/1qo3C.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31829/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.631348 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qo7A id: 1qo7A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qo7A/nostruct-align/1qo7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qo7A/nostruct-align/1qo7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qo7A/nostruct-align/1qo7A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25189/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.123413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qoiA id: 1qoiA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qoiA/nostruct-align/1qoiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qoiA/nostruct-align/1qoiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qoiA/nostruct-align/1qoiA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28748/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.262329 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qorA id: 1qorA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qorA/nostruct-align/1qorA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qorA/nostruct-align/1qorA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qorA/nostruct-align/1qorA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27524/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -198.331421 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qorA_1 id: 1qorA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1q/1qorA_1/nostruct-align/1qorA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1q/1qorA_1/nostruct-align/1qorA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1q/1qorA_1/nostruct-align/1qorA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28434/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -131.244446 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qorA_2 id: 1qorA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1q/1qorA_2/nostruct-align/1qorA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1q/1qorA_2/nostruct-align/1qorA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1q/1qorA_2/nostruct-align/1qorA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22980/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -70.740417 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qouA id: 1qouA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qouA/nostruct-align/1qouA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qouA/nostruct-align/1qouA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qouA/nostruct-align/1qouA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7633/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.453369 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qoxN id: 1qoxN alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qoxN/nostruct-align/1qoxN.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qoxN/nostruct-align/1qoxN.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qoxN/nostruct-align/1qoxN.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24423/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.930420 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qoyA id: 1qoyA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qoyA/nostruct-align/1qoyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qoyA/nostruct-align/1qoyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qoyA/nostruct-align/1qoyA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20439/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.154358 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qp6A id: 1qp6A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qp6A/nostruct-align/1qp6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qp6A/nostruct-align/1qp6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qp6A/nostruct-align/1qp6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21104/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.720459 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qp8A id: 1qp8A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qp8A/nostruct-align/1qp8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qp8A/nostruct-align/1qp8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qp8A/nostruct-align/1qp8A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4765/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -24.340332 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qpbA id: 1qpbA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qpbA/nostruct-align/1qpbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qpbA/nostruct-align/1qpbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qpbA/nostruct-align/1qpbA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15975/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.927429 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qpmA id: 1qpmA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qpmA/nostruct-align/1qpmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qpmA/nostruct-align/1qpmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qpmA/nostruct-align/1qpmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18191/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.267456 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qpoA id: 1qpoA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qpoA/nostruct-align/1qpoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qpoA/nostruct-align/1qpoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qpoA/nostruct-align/1qpoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29476/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.284363 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qpxA id: 1qpxA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qpxA/nostruct-align/1qpxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qpxA/nostruct-align/1qpxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qpxA/nostruct-align/1qpxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7829/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.674438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qpzA id: 1qpzA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qpzA/nostruct-align/1qpzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qpzA/nostruct-align/1qpzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qpzA/nostruct-align/1qpzA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21034/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.808350 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qq2A id: 1qq2A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qq2A/nostruct-align/1qq2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qq2A/nostruct-align/1qq2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qq2A/nostruct-align/1qq2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24786/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.351440 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qq4A id: 1qq4A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qq4A/nostruct-align/1qq4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qq4A/nostruct-align/1qq4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qq4A/nostruct-align/1qq4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23288/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.256348 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qq5A id: 1qq5A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qq5A/nostruct-align/1qq5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qq5A/nostruct-align/1qq5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qq5A/nostruct-align/1qq5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12872/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.685364 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qq7A id: 1qq7A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qq7A/nostruct-align/1qq7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qq7A/nostruct-align/1qq7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qq7A/nostruct-align/1qq7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9985/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.601440 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qq8A id: 1qq8A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qq8A/nostruct-align/1qq8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qq8A/nostruct-align/1qq8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qq8A/nostruct-align/1qq8A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23676/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.091309 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qqeA id: 1qqeA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qqeA/nostruct-align/1qqeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qqeA/nostruct-align/1qqeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qqeA/nostruct-align/1qqeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1260/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.046387 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qqgA id: 1qqgA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qqgA/nostruct-align/1qqgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qqgA/nostruct-align/1qqgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qqgA/nostruct-align/1qqgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20717/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.395386 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qqhA id: 1qqhA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qqhA/nostruct-align/1qqhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qqhA/nostruct-align/1qqhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qqhA/nostruct-align/1qqhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28836/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.525391 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qqp1 id: 1qqp1 alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qqp1/nostruct-align/1qqp1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qqp1/nostruct-align/1qqp1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qqp1/nostruct-align/1qqp1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15710/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.397339 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qqp2 id: 1qqp2 alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qqp2/nostruct-align/1qqp2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qqp2/nostruct-align/1qqp2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qqp2/nostruct-align/1qqp2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27690/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.804443 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qqp3 id: 1qqp3 alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qqp3/nostruct-align/1qqp3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qqp3/nostruct-align/1qqp3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qqp3/nostruct-align/1qqp3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8557/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.671387 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qqp4 id: 1qqp4 alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qqp4/nostruct-align/1qqp4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qqp4/nostruct-align/1qqp4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qqp4/nostruct-align/1qqp4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12392/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.828369 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qqrA id: 1qqrA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qqrA/nostruct-align/1qqrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qqrA/nostruct-align/1qqrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qqrA/nostruct-align/1qqrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31779/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.201416 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qqtA id: 1qqtA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qqtA/nostruct-align/1qqtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qqtA/nostruct-align/1qqtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qqtA/nostruct-align/1qqtA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23072/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.111450 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qqvA id: 1qqvA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qqvA/nostruct-align/1qqvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qqvA/nostruct-align/1qqvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qqvA/nostruct-align/1qqvA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27038/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.466431 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qr0A id: 1qr0A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qr0A/nostruct-align/1qr0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qr0A/nostruct-align/1qr0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qr0A/nostruct-align/1qr0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16947/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.515381 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qr4B id: 1qr4B alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qr4B/nostruct-align/1qr4B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qr4B/nostruct-align/1qr4B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qr4B/nostruct-align/1qr4B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22981/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.615356 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qr6A id: 1qr6A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qr6A/nostruct-align/1qr6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qr6A/nostruct-align/1qr6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qr6A/nostruct-align/1qr6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25442/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.015442 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qr7A id: 1qr7A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qr7A/nostruct-align/1qr7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qr7A/nostruct-align/1qr7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qr7A/nostruct-align/1qr7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2084/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.020447 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qreA id: 1qreA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qreA/nostruct-align/1qreA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qreA/nostruct-align/1qreA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qreA/nostruct-align/1qreA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8275/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.822449 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qrjB id: 1qrjB alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qrjB/nostruct-align/1qrjB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qrjB/nostruct-align/1qrjB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qrjB/nostruct-align/1qrjB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7970/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.183472 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qrqA id: 1qrqA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qrqA/nostruct-align/1qrqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qrqA/nostruct-align/1qrqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qrqA/nostruct-align/1qrqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4627/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.159302 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qrrA id: 1qrrA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qrrA/nostruct-align/1qrrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qrrA/nostruct-align/1qrrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qrrA/nostruct-align/1qrrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8709/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.540405 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qs0A id: 1qs0A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qs0A/nostruct-align/1qs0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qs0A/nostruct-align/1qs0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qs0A/nostruct-align/1qs0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22146/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.062378 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qs0B id: 1qs0B alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qs0B/nostruct-align/1qs0B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qs0B/nostruct-align/1qs0B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qs0B/nostruct-align/1qs0B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1189/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.643372 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qs1A id: 1qs1A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qs1A/nostruct-align/1qs1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qs1A/nostruct-align/1qs1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qs1A/nostruct-align/1qs1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9072/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.104370 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qs2A id: 1qs2A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qs2A/nostruct-align/1qs2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qs2A/nostruct-align/1qs2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qs2A/nostruct-align/1qs2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2371/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.615356 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qsaA id: 1qsaA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qsaA/nostruct-align/1qsaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qsaA/nostruct-align/1qsaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qsaA/nostruct-align/1qsaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18500/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.029419 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qsdA id: 1qsdA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qsdA/nostruct-align/1qsdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qsdA/nostruct-align/1qsdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qsdA/nostruct-align/1qsdA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21104/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.406494 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qsmA id: 1qsmA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qsmA/nostruct-align/1qsmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qsmA/nostruct-align/1qsmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qsmA/nostruct-align/1qsmA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17469/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.197388 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qspA id: 1qspA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qspA/nostruct-align/1qspA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qspA/nostruct-align/1qspA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qspA/nostruct-align/1qspA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4488/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.903381 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qt9A id: 1qt9A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qt9A/nostruct-align/1qt9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qt9A/nostruct-align/1qt9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qt9A/nostruct-align/1qt9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22603/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.178406 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qtrA id: 1qtrA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qtrA/nostruct-align/1qtrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qtrA/nostruct-align/1qtrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qtrA/nostruct-align/1qtrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24318/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.875366 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qtsA id: 1qtsA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qtsA/nostruct-align/1qtsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qtsA/nostruct-align/1qtsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qtsA/nostruct-align/1qtsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14228/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.328430 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qtwA id: 1qtwA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qtwA/nostruct-align/1qtwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qtwA/nostruct-align/1qtwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qtwA/nostruct-align/1qtwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18102/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.600464 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qu0A id: 1qu0A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qu0A/nostruct-align/1qu0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qu0A/nostruct-align/1qu0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qu0A/nostruct-align/1qu0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-918/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.676392 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qu1A id: 1qu1A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qu1A/nostruct-align/1qu1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qu1A/nostruct-align/1qu1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qu1A/nostruct-align/1qu1A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-604/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.412354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qu2A id: 1qu2A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qu2A/nostruct-align/1qu2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qu2A/nostruct-align/1qu2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qu2A/nostruct-align/1qu2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29187/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.139404 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qu5A id: 1qu5A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qu5A/nostruct-align/1qu5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qu5A/nostruct-align/1qu5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qu5A/nostruct-align/1qu5A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24852/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.927429 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qu6A id: 1qu6A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qu6A/nostruct-align/1qu6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qu6A/nostruct-align/1qu6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qu6A/nostruct-align/1qu6A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14492/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.827393 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qu8A id: 1qu8A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qu8A/nostruct-align/1qu8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qu8A/nostruct-align/1qu8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qu8A/nostruct-align/1qu8A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8124/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.250427 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qu9A id: 1qu9A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qu9A/nostruct-align/1qu9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qu9A/nostruct-align/1qu9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qu9A/nostruct-align/1qu9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26964/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.244385 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qubA id: 1qubA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qubA/nostruct-align/1qubA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qubA/nostruct-align/1qubA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qubA/nostruct-align/1qubA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1692/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.872437 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1que id: 1que alignment found: /projects/compbio/experiments/models.97/pdb/1q/1que/nostruct-align/1que.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1que/nostruct-align/1que.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1que/nostruct-align/1que.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4681/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.993408 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qumA id: 1qumA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qumA/nostruct-align/1qumA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qumA/nostruct-align/1qumA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qumA/nostruct-align/1qumA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9589/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.091431 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qupA id: 1qupA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qupA/nostruct-align/1qupA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qupA/nostruct-align/1qupA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qupA/nostruct-align/1qupA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9733/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.308350 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1quqA id: 1quqA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1quqA/nostruct-align/1quqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1quqA/nostruct-align/1quqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1quqA/nostruct-align/1quqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21787/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.100403 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1quqB id: 1quqB alignment found: /projects/compbio/experiments/models.97/pdb/1q/1quqB/nostruct-align/1quqB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1quqB/nostruct-align/1quqB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1quqB/nostruct-align/1quqB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6993/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.297424 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qusA id: 1qusA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qusA/nostruct-align/1qusA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qusA/nostruct-align/1qusA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qusA/nostruct-align/1qusA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15806/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.846313 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1quuA id: 1quuA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1quuA/nostruct-align/1quuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1quuA/nostruct-align/1quuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1quuA/nostruct-align/1quuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17797/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -21.552368 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1quvA id: 1quvA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1quvA/nostruct-align/1quvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1quvA/nostruct-align/1quvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1quvA/nostruct-align/1quvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14714/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.407471 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qvaA id: 1qvaA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qvaA/nostruct-align/1qvaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qvaA/nostruct-align/1qvaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qvaA/nostruct-align/1qvaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7842/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.569336 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qvbA id: 1qvbA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qvbA/nostruct-align/1qvbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qvbA/nostruct-align/1qvbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qvbA/nostruct-align/1qvbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18234/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.510376 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qyp id: 1qyp alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qyp/nostruct-align/1qyp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qyp/nostruct-align/1qyp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qyp/nostruct-align/1qyp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20310/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.604370 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1r1bA id: 1r1bA alignment found: /projects/compbio/experiments/models.97/pdb/1r/1r1bA/nostruct-align/1r1bA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1r1bA/nostruct-align/1r1bA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1r1bA/nostruct-align/1r1bA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30796/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.023438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1r2aA id: 1r2aA alignment found: /projects/compbio/experiments/models.97/pdb/1r/1r2aA/nostruct-align/1r2aA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1r2aA/nostruct-align/1r2aA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1r2aA/nostruct-align/1r2aA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8465/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.232422 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1r2fA id: 1r2fA alignment found: /projects/compbio/experiments/models.97/pdb/1r/1r2fA/nostruct-align/1r2fA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1r2fA/nostruct-align/1r2fA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1r2fA/nostruct-align/1r2fA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12650/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.147461 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1r69 id: 1r69 alignment found: /projects/compbio/experiments/models.97/pdb/1r/1r69/nostruct-align/1r69.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1r69/nostruct-align/1r69.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1r69/nostruct-align/1r69.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16997/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.339355 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ra9 id: 1ra9 alignment found: /projects/compbio/experiments/models.97/pdb/1r/1ra9/nostruct-align/1ra9.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1ra9/nostruct-align/1ra9.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1ra9/nostruct-align/1ra9.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28833/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.215332 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1raaA_1 id: 1raaA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1r/1raaA_1/nostruct-align/1raaA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1r/1raaA_1/nostruct-align/1raaA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1r/1raaA_1/nostruct-align/1raaA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10598/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.780396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1raaA_2 id: 1raaA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1r/1raaA_2/nostruct-align/1raaA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1r/1raaA_2/nostruct-align/1raaA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1r/1raaA_2/nostruct-align/1raaA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6303/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.464478 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1raaB_1 id: 1raaB_1 alignment found: /projects/compbio4/experiments/models.97/domains/1r/1raaB_1/nostruct-align/1raaB_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1r/1raaB_1/nostruct-align/1raaB_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1r/1raaB_1/nostruct-align/1raaB_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30851/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.745361 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1raaB_2 id: 1raaB_2 alignment found: /projects/compbio4/experiments/models.97/domains/1r/1raaB_2/nostruct-align/1raaB_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1r/1raaB_2/nostruct-align/1raaB_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1r/1raaB_2/nostruct-align/1raaB_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25533/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.742371 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rb9 id: 1rb9 alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rb9/nostruct-align/1rb9.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rb9/nostruct-align/1rb9.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rb9/nostruct-align/1rb9.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14624/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.255371 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rboC id: 1rboC alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rboC/nostruct-align/1rboC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rboC/nostruct-align/1rboC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rboC/nostruct-align/1rboC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30563/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.912476 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rcb id: 1rcb alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rcb/nostruct-align/1rcb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rcb/nostruct-align/1rcb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rcb/nostruct-align/1rcb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15262/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.973389 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rcd id: 1rcd alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rcd/nostruct-align/1rcd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rcd/nostruct-align/1rcd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rcd/nostruct-align/1rcd.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-11754/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.155396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rcf id: 1rcf alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rcf/nostruct-align/1rcf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rcf/nostruct-align/1rcf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rcf/nostruct-align/1rcf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12342/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.309326 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rcy id: 1rcy alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rcy/nostruct-align/1rcy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rcy/nostruct-align/1rcy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rcy/nostruct-align/1rcy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31459/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.408447 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rdg id: 1rdg alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rdg/nostruct-align/1rdg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rdg/nostruct-align/1rdg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rdg/nostruct-align/1rdg.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6918/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.119385 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rdr id: 1rdr alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rdr/nostruct-align/1rdr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rdr/nostruct-align/1rdr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rdr/nostruct-align/1rdr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16887/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.511353 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rec id: 1rec alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rec/nostruct-align/1rec.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rec/nostruct-align/1rec.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rec/nostruct-align/1rec.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30200/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.351440 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1regX id: 1regX alignment found: /projects/compbio/experiments/models.97/pdb/1r/1regX/nostruct-align/1regX.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1regX/nostruct-align/1regX.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1regX/nostruct-align/1regX.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24415/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.594360 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1repC id: 1repC alignment found: /projects/compbio/experiments/models.97/pdb/1r/1repC/nostruct-align/1repC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1repC/nostruct-align/1repC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1repC/nostruct-align/1repC.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27065/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.888428 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1reqA id: 1reqA alignment found: /projects/compbio/experiments/models.97/pdb/1r/1reqA/nostruct-align/1reqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1reqA/nostruct-align/1reqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1reqA/nostruct-align/1reqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19370/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.381409 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1reqB id: 1reqB alignment found: /projects/compbio/experiments/models.97/pdb/1r/1reqB/nostruct-align/1reqB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1reqB/nostruct-align/1reqB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1reqB/nostruct-align/1reqB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10000/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.508423 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1reqD id: 1reqD alignment found: /projects/compbio/experiments/models.97/pdb/1r/1reqD/nostruct-align/1reqD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1reqD/nostruct-align/1reqD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1reqD/nostruct-align/1reqD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20254/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.984375 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1res id: 1res alignment found: /projects/compbio/experiments/models.97/pdb/1r/1res/nostruct-align/1res.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1res/nostruct-align/1res.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1res/nostruct-align/1res.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2278/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.127441 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ret id: 1ret alignment found: /projects/compbio/experiments/models.97/pdb/1r/1ret/nostruct-align/1ret.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1ret/nostruct-align/1ret.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1ret/nostruct-align/1ret.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28430/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.345337 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rfbA id: 1rfbA alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rfbA/nostruct-align/1rfbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rfbA/nostruct-align/1rfbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rfbA/nostruct-align/1rfbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13610/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.256470 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rfs id: 1rfs alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rfs/nostruct-align/1rfs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rfs/nostruct-align/1rfs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rfs/nostruct-align/1rfs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29776/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.175415 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rgeA id: 1rgeA alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rgeA/nostruct-align/1rgeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rgeA/nostruct-align/1rgeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rgeA/nostruct-align/1rgeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10871/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.330322 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rgs id: 1rgs alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rgs/nostruct-align/1rgs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rgs/nostruct-align/1rgs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rgs/nostruct-align/1rgs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-254/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.197388 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rh2F id: 1rh2F alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rh2F/nostruct-align/1rh2F.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rh2F/nostruct-align/1rh2F.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rh2F/nostruct-align/1rh2F.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24377/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.832397 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rh4 id: 1rh4 alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rh4/nostruct-align/1rh4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rh4/nostruct-align/1rh4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rh4/nostruct-align/1rh4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13080/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.212402 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rhi3 id: 1rhi3 alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rhi3/nostruct-align/1rhi3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rhi3/nostruct-align/1rhi3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rhi3/nostruct-align/1rhi3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26509/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.158447 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rhoA id: 1rhoA alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rhoA/nostruct-align/1rhoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rhoA/nostruct-align/1rhoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rhoA/nostruct-align/1rhoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11157/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.675354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rhoC id: 1rhoC alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rhoC/nostruct-align/1rhoC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rhoC/nostruct-align/1rhoC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rhoC/nostruct-align/1rhoC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24278/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.610352 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rhs id: 1rhs alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rhs/nostruct-align/1rhs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rhs/nostruct-align/1rhs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rhs/nostruct-align/1rhs.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6628/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.990356 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ribA id: 1ribA alignment found: /projects/compbio/experiments/models.97/pdb/1r/1ribA/nostruct-align/1ribA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1ribA/nostruct-align/1ribA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1ribA/nostruct-align/1ribA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-10447/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.702393 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rie id: 1rie alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rie/nostruct-align/1rie.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rie/nostruct-align/1rie.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rie/nostruct-align/1rie.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18041/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.072388 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rip id: 1rip alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rip/nostruct-align/1rip.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rip/nostruct-align/1rip.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rip/nostruct-align/1rip.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19393/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.465454 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ris id: 1ris alignment found: /projects/compbio/experiments/models.97/pdb/1r/1ris/nostruct-align/1ris.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1ris/nostruct-align/1ris.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1ris/nostruct-align/1ris.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30989/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.185303 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rkd id: 1rkd alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rkd/nostruct-align/1rkd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rkd/nostruct-align/1rkd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rkd/nostruct-align/1rkd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19567/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.492432 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rl2A id: 1rl2A alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rl2A/nostruct-align/1rl2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rl2A/nostruct-align/1rl2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rl2A/nostruct-align/1rl2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5752/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.669373 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rl6A id: 1rl6A alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rl6A/nostruct-align/1rl6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rl6A/nostruct-align/1rl6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rl6A/nostruct-align/1rl6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20407/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.487366 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rlaA id: 1rlaA alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rlaA/nostruct-align/1rlaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rlaA/nostruct-align/1rlaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rlaA/nostruct-align/1rlaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1571/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.269409 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rlr id: 1rlr alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rlr/nostruct-align/1rlr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rlr/nostruct-align/1rlr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rlr/nostruct-align/1rlr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30550/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.311401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rlw id: 1rlw alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rlw/nostruct-align/1rlw.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rlw/nostruct-align/1rlw.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rlw/nostruct-align/1rlw.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13989/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.517456 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rmd id: 1rmd alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rmd/nostruct-align/1rmd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rmd/nostruct-align/1rmd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rmd/nostruct-align/1rmd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-305/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.732422 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rmg id: 1rmg alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rmg/nostruct-align/1rmg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rmg/nostruct-align/1rmg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rmg/nostruct-align/1rmg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14068/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.575439 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rmi id: 1rmi alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rmi/nostruct-align/1rmi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rmi/nostruct-align/1rmi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rmi/nostruct-align/1rmi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9644/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.836426 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rmvA id: 1rmvA alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rmvA/nostruct-align/1rmvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rmvA/nostruct-align/1rmvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rmvA/nostruct-align/1rmvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32483/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.786377 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rnd id: 1rnd alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rnd/nostruct-align/1rnd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rnd/nostruct-align/1rnd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rnd/nostruct-align/1rnd.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15525/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.698486 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rom id: 1rom alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rom/nostruct-align/1rom.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rom/nostruct-align/1rom.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rom/nostruct-align/1rom.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3894/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.041382 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ron id: 1ron alignment found: /projects/compbio/experiments/models.97/pdb/1r/1ron/nostruct-align/1ron.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1ron/nostruct-align/1ron.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1ron/nostruct-align/1ron.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27462/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.689331 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1roo id: 1roo alignment found: /projects/compbio/experiments/models.97/pdb/1r/1roo/nostruct-align/1roo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1roo/nostruct-align/1roo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1roo/nostruct-align/1roo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8351/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.899475 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rpa id: 1rpa alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rpa/nostruct-align/1rpa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rpa/nostruct-align/1rpa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rpa/nostruct-align/1rpa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21159/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.917358 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rpjA id: 1rpjA alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rpjA/nostruct-align/1rpjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rpjA/nostruct-align/1rpjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rpjA/nostruct-align/1rpjA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23526/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.472412 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rpl id: 1rpl alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rpl/nostruct-align/1rpl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rpl/nostruct-align/1rpl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rpl/nostruct-align/1rpl.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-4181/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.323364 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rpo id: 1rpo alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rpo/nostruct-align/1rpo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rpo/nostruct-align/1rpo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rpo/nostruct-align/1rpo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21811/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.107422 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rpxA id: 1rpxA alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rpxA/nostruct-align/1rpxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rpxA/nostruct-align/1rpxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rpxA/nostruct-align/1rpxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30351/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.035400 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rro id: 1rro alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rro/nostruct-align/1rro.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rro/nostruct-align/1rro.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rro/nostruct-align/1rro.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18407/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.036377 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rrpB id: 1rrpB alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rrpB/nostruct-align/1rrpB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rrpB/nostruct-align/1rrpB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rrpB/nostruct-align/1rrpB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25757/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.085449 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rss id: 1rss alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rss/nostruct-align/1rss.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rss/nostruct-align/1rss.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rss/nostruct-align/1rss.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20697/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.758423 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rsy id: 1rsy alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rsy/nostruct-align/1rsy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rsy/nostruct-align/1rsy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rsy/nostruct-align/1rsy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30876/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.790405 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rthA id: 1rthA alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rthA/nostruct-align/1rthA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rthA/nostruct-align/1rthA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rthA/nostruct-align/1rthA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8211/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.293335 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rtm1 id: 1rtm1 alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rtm1/nostruct-align/1rtm1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rtm1/nostruct-align/1rtm1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rtm1/nostruct-align/1rtm1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18267/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.838379 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rtm1_1 id: 1rtm1_1 alignment found: /projects/compbio4/experiments/models.97/domains/1r/1rtm1_1/nostruct-align/1rtm1_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1r/1rtm1_1/nostruct-align/1rtm1_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1r/1rtm1_1/nostruct-align/1rtm1_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16368/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.126465 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rtu id: 1rtu alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rtu/nostruct-align/1rtu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rtu/nostruct-align/1rtu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rtu/nostruct-align/1rtu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9059/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.520386 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rusA id: 1rusA alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rusA/nostruct-align/1rusA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rusA/nostruct-align/1rusA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rusA/nostruct-align/1rusA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29354/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.503418 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rvaA id: 1rvaA alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rvaA/nostruct-align/1rvaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rvaA/nostruct-align/1rvaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rvaA/nostruct-align/1rvaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32427/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.794434 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rvv1 id: 1rvv1 alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rvv1/nostruct-align/1rvv1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rvv1/nostruct-align/1rvv1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rvv1/nostruct-align/1rvv1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16043/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.879456 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ryc id: 1ryc alignment found: /projects/compbio/experiments/models.97/pdb/1r/1ryc/nostruct-align/1ryc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1ryc/nostruct-align/1ryc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1ryc/nostruct-align/1ryc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9606/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.531372 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ryp1 id: 1ryp1 alignment found: /projects/compbio/experiments/models.97/pdb/1r/1ryp1/nostruct-align/1ryp1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1ryp1/nostruct-align/1ryp1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1ryp1/nostruct-align/1ryp1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14195/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.290405 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ryp2 id: 1ryp2 alignment found: /projects/compbio/experiments/models.97/pdb/1r/1ryp2/nostruct-align/1ryp2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1ryp2/nostruct-align/1ryp2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1ryp2/nostruct-align/1ryp2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-791/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.086365 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rypB id: 1rypB alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rypB/nostruct-align/1rypB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rypB/nostruct-align/1rypB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rypB/nostruct-align/1rypB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9726/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.506348 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rypC id: 1rypC alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rypC/nostruct-align/1rypC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rypC/nostruct-align/1rypC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rypC/nostruct-align/1rypC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15736/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.766418 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rypD id: 1rypD alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rypD/nostruct-align/1rypD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rypD/nostruct-align/1rypD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rypD/nostruct-align/1rypD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7013/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.715393 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rypE id: 1rypE alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rypE/nostruct-align/1rypE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rypE/nostruct-align/1rypE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rypE/nostruct-align/1rypE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3348/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.243408 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rypF id: 1rypF alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rypF/nostruct-align/1rypF.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rypF/nostruct-align/1rypF.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rypF/nostruct-align/1rypF.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7924/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.086426 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ryt id: 1ryt alignment found: /projects/compbio/experiments/models.97/pdb/1r/1ryt/nostruct-align/1ryt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1ryt/nostruct-align/1ryt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1ryt/nostruct-align/1ryt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22648/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.573364 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1rzl id: 1rzl alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rzl/nostruct-align/1rzl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rzl/nostruct-align/1rzl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rzl/nostruct-align/1rzl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14102/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.147461 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1s01 id: 1s01 alignment found: /projects/compbio/experiments/models.97/pdb/1s/1s01/nostruct-align/1s01.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1s01/nostruct-align/1s01.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1s01/nostruct-align/1s01.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7402/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.956482 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sacA id: 1sacA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sacA/nostruct-align/1sacA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sacA/nostruct-align/1sacA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sacA/nostruct-align/1sacA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16009/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.788452 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sat id: 1sat alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sat/nostruct-align/1sat.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sat/nostruct-align/1sat.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sat/nostruct-align/1sat.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13651/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.322388 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sayA id: 1sayA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sayA/nostruct-align/1sayA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sayA/nostruct-align/1sayA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sayA/nostruct-align/1sayA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18155/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -102.296387 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sbp id: 1sbp alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sbp/nostruct-align/1sbp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sbp/nostruct-align/1sbp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sbp/nostruct-align/1sbp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21812/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.829346 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sbwI id: 1sbwI alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sbwI/nostruct-align/1sbwI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sbwI/nostruct-align/1sbwI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sbwI/nostruct-align/1sbwI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14995/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -4.804443 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sceA id: 1sceA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sceA/nostruct-align/1sceA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sceA/nostruct-align/1sceA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sceA/nostruct-align/1sceA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-10396/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.955444 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1scjB id: 1scjB alignment found: /projects/compbio/experiments/models.97/pdb/1s/1scjB/nostruct-align/1scjB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1scjB/nostruct-align/1scjB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1scjB/nostruct-align/1scjB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17368/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.718384 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1scmA id: 1scmA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1scmA/nostruct-align/1scmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1scmA/nostruct-align/1scmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1scmA/nostruct-align/1scmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28775/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.138428 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1scmB id: 1scmB alignment found: /projects/compbio/experiments/models.97/pdb/1s/1scmB/nostruct-align/1scmB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1scmB/nostruct-align/1scmB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1scmB/nostruct-align/1scmB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-11767/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.719360 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sco id: 1sco alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sco/nostruct-align/1sco.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sco/nostruct-align/1sco.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sco/nostruct-align/1sco.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20558/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.579468 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1scs id: 1scs alignment found: /projects/compbio/experiments/models.97/pdb/1s/1scs/nostruct-align/1scs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1scs/nostruct-align/1scs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1scs/nostruct-align/1scs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1952/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.173340 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1scuA id: 1scuA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1scuA/nostruct-align/1scuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1scuA/nostruct-align/1scuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1scuA/nostruct-align/1scuA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9493/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.763428 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1scuA_1 id: 1scuA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1s/1scuA_1/nostruct-align/1scuA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1s/1scuA_1/nostruct-align/1scuA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1s/1scuA_1/nostruct-align/1scuA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5791/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.362366 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1scuA_2 id: 1scuA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1s/1scuA_2/nostruct-align/1scuA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1s/1scuA_2/nostruct-align/1scuA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1s/1scuA_2/nostruct-align/1scuA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27510/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.388428 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1scuB_1 id: 1scuB_1 alignment found: /projects/compbio4/experiments/models.97/domains/1s/1scuB_1/nostruct-align/1scuB_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1s/1scuB_1/nostruct-align/1scuB_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1s/1scuB_1/nostruct-align/1scuB_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2446/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.428406 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1scuB_2 id: 1scuB_2 alignment found: /projects/compbio4/experiments/models.97/domains/1s/1scuB_2/nostruct-align/1scuB_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1s/1scuB_2/nostruct-align/1scuB_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1s/1scuB_2/nostruct-align/1scuB_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15966/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.761414 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1se2_1 id: 1se2_1 alignment found: /projects/compbio4/experiments/models.97/domains/1s/1se2_1/nostruct-align/1se2_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1s/1se2_1/nostruct-align/1se2_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1s/1se2_1/nostruct-align/1se2_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24502/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.545410 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1se2_2 id: 1se2_2 alignment found: /projects/compbio4/experiments/models.97/domains/1s/1se2_2/nostruct-align/1se2_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1s/1se2_2/nostruct-align/1se2_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1s/1se2_2/nostruct-align/1se2_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6741/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.676392 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1seiA id: 1seiA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1seiA/nostruct-align/1seiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1seiA/nostruct-align/1seiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1seiA/nostruct-align/1seiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21900/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.097473 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sek id: 1sek alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sek/nostruct-align/1sek.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sek/nostruct-align/1sek.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sek/nostruct-align/1sek.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23009/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.922363 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1semA id: 1semA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1semA/nostruct-align/1semA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1semA/nostruct-align/1semA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1semA/nostruct-align/1semA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7621/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.604370 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sesA id: 1sesA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sesA/nostruct-align/1sesA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sesA/nostruct-align/1sesA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sesA/nostruct-align/1sesA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30043/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.089355 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1setA_1 id: 1setA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1s/1setA_1/nostruct-align/1setA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1s/1setA_1/nostruct-align/1setA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1s/1setA_1/nostruct-align/1setA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32471/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.005493 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1setA_2 id: 1setA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1s/1setA_2/nostruct-align/1setA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1s/1setA_2/nostruct-align/1setA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1s/1setA_2/nostruct-align/1setA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1256/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.277466 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sfcA id: 1sfcA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sfcA/nostruct-align/1sfcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sfcA/nostruct-align/1sfcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sfcA/nostruct-align/1sfcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14486/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.785400 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sfcB id: 1sfcB alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sfcB/nostruct-align/1sfcB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sfcB/nostruct-align/1sfcB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sfcB/nostruct-align/1sfcB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9685/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.343445 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sfcC id: 1sfcC alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sfcC/nostruct-align/1sfcC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sfcC/nostruct-align/1sfcC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sfcC/nostruct-align/1sfcC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20814/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.267456 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sfcD id: 1sfcD alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sfcD/nostruct-align/1sfcD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sfcD/nostruct-align/1sfcD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sfcD/nostruct-align/1sfcD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20370/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.881348 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sfcE id: 1sfcE alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sfcE/nostruct-align/1sfcE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sfcE/nostruct-align/1sfcE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sfcE/nostruct-align/1sfcE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3460/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.660400 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sfe id: 1sfe alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sfe/nostruct-align/1sfe.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sfe/nostruct-align/1sfe.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sfe/nostruct-align/1sfe.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13885/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.019470 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sfp id: 1sfp alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sfp/nostruct-align/1sfp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sfp/nostruct-align/1sfp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sfp/nostruct-align/1sfp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8655/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.351440 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sftA id: 1sftA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sftA/nostruct-align/1sftA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sftA/nostruct-align/1sftA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sftA/nostruct-align/1sftA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6526/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.682373 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sgc id: 1sgc alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sgc/nostruct-align/1sgc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sgc/nostruct-align/1sgc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sgc/nostruct-align/1sgc.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-9644/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.595337 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sgpE id: 1sgpE alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sgpE/nostruct-align/1sgpE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sgpE/nostruct-align/1sgpE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sgpE/nostruct-align/1sgpE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10356/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.588379 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sgpI id: 1sgpI alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sgpI/nostruct-align/1sgpI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sgpI/nostruct-align/1sgpI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sgpI/nostruct-align/1sgpI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26294/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.793396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sgt id: 1sgt alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sgt/nostruct-align/1sgt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sgt/nostruct-align/1sgt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sgt/nostruct-align/1sgt.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10122/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.851318 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sh1 id: 1sh1 alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sh1/nostruct-align/1sh1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sh1/nostruct-align/1sh1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sh1/nostruct-align/1sh1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8066/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.490356 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1shaA id: 1shaA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1shaA/nostruct-align/1shaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1shaA/nostruct-align/1shaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1shaA/nostruct-align/1shaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15166/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.790405 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1shcA id: 1shcA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1shcA/nostruct-align/1shcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1shcA/nostruct-align/1shcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1shcA/nostruct-align/1shcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16536/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.532471 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1shdA id: 1shdA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1shdA/nostruct-align/1shdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1shdA/nostruct-align/1shdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1shdA/nostruct-align/1shdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26469/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.745361 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1shfA id: 1shfA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1shfA/nostruct-align/1shfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1shfA/nostruct-align/1shfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1shfA/nostruct-align/1shfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13591/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.172485 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1shg id: 1shg alignment found: /projects/compbio/experiments/models.97/pdb/1s/1shg/nostruct-align/1shg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1shg/nostruct-align/1shg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1shg/nostruct-align/1shg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27217/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.465454 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1shkA id: 1shkA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1shkA/nostruct-align/1shkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1shkA/nostruct-align/1shkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1shkA/nostruct-align/1shkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5559/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.660400 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1shsA id: 1shsA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1shsA/nostruct-align/1shsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1shsA/nostruct-align/1shsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1shsA/nostruct-align/1shsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26028/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.341431 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sig id: 1sig alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sig/nostruct-align/1sig.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sig/nostruct-align/1sig.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sig/nostruct-align/1sig.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1647/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.041382 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sis id: 1sis alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sis/nostruct-align/1sis.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sis/nostruct-align/1sis.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sis/nostruct-align/1sis.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3565/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.992371 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1skf id: 1skf alignment found: /projects/compbio/experiments/models.97/pdb/1s/1skf/nostruct-align/1skf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1skf/nostruct-align/1skf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1skf/nostruct-align/1skf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29821/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.664429 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sknP id: 1sknP alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sknP/nostruct-align/1sknP.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sknP/nostruct-align/1sknP.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sknP/nostruct-align/1sknP.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-263/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.991455 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1skyB id: 1skyB alignment found: /projects/compbio/experiments/models.97/pdb/1s/1skyB/nostruct-align/1skyB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1skyB/nostruct-align/1skyB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1skyB/nostruct-align/1skyB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5511/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.115356 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1skyE id: 1skyE alignment found: /projects/compbio/experiments/models.97/pdb/1s/1skyE/nostruct-align/1skyE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1skyE/nostruct-align/1skyE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1skyE/nostruct-align/1skyE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28979/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.282410 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1skz id: 1skz alignment found: /projects/compbio/experiments/models.97/pdb/1s/1skz/nostruct-align/1skz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1skz/nostruct-align/1skz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1skz/nostruct-align/1skz.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14812/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.373413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1slaA id: 1slaA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1slaA/nostruct-align/1slaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1slaA/nostruct-align/1slaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1slaA/nostruct-align/1slaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28064/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.367432 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sltA id: 1sltA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sltA/nostruct-align/1sltA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sltA/nostruct-align/1sltA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sltA/nostruct-align/1sltA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13573/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.017334 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sltB id: 1sltB alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sltB/nostruct-align/1sltB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sltB/nostruct-align/1sltB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sltB/nostruct-align/1sltB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15058/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.192383 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sluA id: 1sluA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sluA/nostruct-align/1sluA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sluA/nostruct-align/1sluA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sluA/nostruct-align/1sluA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21068/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.551392 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1slvA id: 1slvA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1slvA/nostruct-align/1slvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1slvA/nostruct-align/1slvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1slvA/nostruct-align/1slvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.783447 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sly id: 1sly alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sly/nostruct-align/1sly.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sly/nostruct-align/1sly.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sly/nostruct-align/1sly.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28345/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.167358 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1smd id: 1smd alignment found: /projects/compbio/experiments/models.97/pdb/1s/1smd/nostruct-align/1smd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1smd/nostruct-align/1smd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1smd/nostruct-align/1smd.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5000/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.558472 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1smeA id: 1smeA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1smeA/nostruct-align/1smeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1smeA/nostruct-align/1smeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1smeA/nostruct-align/1smeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31909/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.039429 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1smlA id: 1smlA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1smlA/nostruct-align/1smlA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1smlA/nostruct-align/1smlA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1smlA/nostruct-align/1smlA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3049/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.547363 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1smnA id: 1smnA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1smnA/nostruct-align/1smnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1smnA/nostruct-align/1smnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1smnA/nostruct-align/1smnA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6979/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.078369 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1smpI id: 1smpI alignment found: /projects/compbio/experiments/models.97/pdb/1s/1smpI/nostruct-align/1smpI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1smpI/nostruct-align/1smpI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1smpI/nostruct-align/1smpI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8027/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.411377 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1smrA id: 1smrA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1smrA/nostruct-align/1smrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1smrA/nostruct-align/1smrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1smrA/nostruct-align/1smrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32509/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.737366 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1smtA id: 1smtA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1smtA/nostruct-align/1smtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1smtA/nostruct-align/1smtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1smtA/nostruct-align/1smtA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27006/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.499390 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1smtB id: 1smtB alignment found: /projects/compbio/experiments/models.97/pdb/1s/1smtB/nostruct-align/1smtB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1smtB/nostruct-align/1smtB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1smtB/nostruct-align/1smtB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1004/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.372314 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1smvA id: 1smvA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1smvA/nostruct-align/1smvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1smvA/nostruct-align/1smvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1smvA/nostruct-align/1smvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6408/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.343384 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sn4A id: 1sn4A alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sn4A/nostruct-align/1sn4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sn4A/nostruct-align/1sn4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sn4A/nostruct-align/1sn4A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25421/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.247314 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1snc id: 1snc alignment found: /projects/compbio/experiments/models.97/pdb/1s/1snc/nostruct-align/1snc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1snc/nostruct-align/1snc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1snc/nostruct-align/1snc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31072/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.396423 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1soxA id: 1soxA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1soxA/nostruct-align/1soxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1soxA/nostruct-align/1soxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1soxA/nostruct-align/1soxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7176/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.068481 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1spa id: 1spa alignment found: /projects/compbio/experiments/models.97/pdb/1s/1spa/nostruct-align/1spa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1spa/nostruct-align/1spa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1spa/nostruct-align/1spa.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24279/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.638367 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1spbP id: 1spbP alignment found: /projects/compbio/experiments/models.97/pdb/1s/1spbP/nostruct-align/1spbP.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1spbP/nostruct-align/1spbP.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1spbP/nostruct-align/1spbP.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24103/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.165405 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1spf id: 1spf alignment found: /projects/compbio/experiments/models.97/pdb/1s/1spf/nostruct-align/1spf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1spf/nostruct-align/1spf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1spf/nostruct-align/1spf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27323/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.990479 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1spgA id: 1spgA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1spgA/nostruct-align/1spgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1spgA/nostruct-align/1spgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1spgA/nostruct-align/1spgA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-12822/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.825439 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1spgB id: 1spgB alignment found: /projects/compbio/experiments/models.97/pdb/1s/1spgB/nostruct-align/1spgB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1spgB/nostruct-align/1spgB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1spgB/nostruct-align/1spgB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-13981/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.156372 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1spuB id: 1spuB alignment found: /projects/compbio/experiments/models.97/pdb/1s/1spuB/nostruct-align/1spuB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1spuB/nostruct-align/1spuB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1spuB/nostruct-align/1spuB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3711/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.153381 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sra id: 1sra alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sra/nostruct-align/1sra.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sra/nostruct-align/1sra.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sra/nostruct-align/1sra.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31866/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.724365 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sriA id: 1sriA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sriA/nostruct-align/1sriA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sriA/nostruct-align/1sriA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sriA/nostruct-align/1sriA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18516/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.062378 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sro id: 1sro alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sro/nostruct-align/1sro.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sro/nostruct-align/1sro.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sro/nostruct-align/1sro.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27024/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.157349 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1srrA id: 1srrA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1srrA/nostruct-align/1srrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1srrA/nostruct-align/1srrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1srrA/nostruct-align/1srrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-976/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.025452 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sso id: 1sso alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sso/nostruct-align/1sso.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sso/nostruct-align/1sso.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sso/nostruct-align/1sso.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28493/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.761475 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1std id: 1std alignment found: /projects/compbio/experiments/models.97/pdb/1s/1std/nostruct-align/1std.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1std/nostruct-align/1std.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1std/nostruct-align/1std.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29116/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.952332 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1stfI id: 1stfI alignment found: /projects/compbio/experiments/models.97/pdb/1s/1stfI/nostruct-align/1stfI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1stfI/nostruct-align/1stfI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1stfI/nostruct-align/1stfI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9295/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.445312 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1stmA id: 1stmA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1stmA/nostruct-align/1stmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1stmA/nostruct-align/1stmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1stmA/nostruct-align/1stmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31488/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.310425 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1stu id: 1stu alignment found: /projects/compbio/experiments/models.97/pdb/1s/1stu/nostruct-align/1stu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1stu/nostruct-align/1stu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1stu/nostruct-align/1stu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13211/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.812378 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sty id: 1sty alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sty/nostruct-align/1sty.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sty/nostruct-align/1sty.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sty/nostruct-align/1sty.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-12382/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.637329 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sup id: 1sup alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sup/nostruct-align/1sup.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sup/nostruct-align/1sup.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sup/nostruct-align/1sup.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15142/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.078491 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sur id: 1sur alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sur/nostruct-align/1sur.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sur/nostruct-align/1sur.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sur/nostruct-align/1sur.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17121/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.332336 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1svb id: 1svb alignment found: /projects/compbio/experiments/models.97/pdb/1s/1svb/nostruct-align/1svb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1svb/nostruct-align/1svb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1svb/nostruct-align/1svb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31565/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.938416 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1svfA id: 1svfA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1svfA/nostruct-align/1svfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1svfA/nostruct-align/1svfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1svfA/nostruct-align/1svfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27005/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.846375 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1svfB id: 1svfB alignment found: /projects/compbio/experiments/models.97/pdb/1s/1svfB/nostruct-align/1svfB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1svfB/nostruct-align/1svfB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1svfB/nostruct-align/1svfB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7575/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.122375 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1svpA id: 1svpA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1svpA/nostruct-align/1svpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1svpA/nostruct-align/1svpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1svpA/nostruct-align/1svpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20450/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.600403 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1svq id: 1svq alignment found: /projects/compbio/experiments/models.97/pdb/1s/1svq/nostruct-align/1svq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1svq/nostruct-align/1svq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1svq/nostruct-align/1svq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26836/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.710327 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1svr id: 1svr alignment found: /projects/compbio/experiments/models.97/pdb/1s/1svr/nostruct-align/1svr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1svr/nostruct-align/1svr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1svr/nostruct-align/1svr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5304/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.635376 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1svy id: 1svy alignment found: /projects/compbio/experiments/models.97/pdb/1s/1svy/nostruct-align/1svy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1svy/nostruct-align/1svy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1svy/nostruct-align/1svy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28384/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.769409 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sw6A id: 1sw6A alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sw6A/nostruct-align/1sw6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sw6A/nostruct-align/1sw6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sw6A/nostruct-align/1sw6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29975/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.925293 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1swuA id: 1swuA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1swuA/nostruct-align/1swuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1swuA/nostruct-align/1swuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1swuA/nostruct-align/1swuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7060/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.123413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1sxl id: 1sxl alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sxl/nostruct-align/1sxl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sxl/nostruct-align/1sxl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sxl/nostruct-align/1sxl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24042/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.572388 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1szt id: 1szt alignment found: /projects/compbio/experiments/models.97/pdb/1s/1szt/nostruct-align/1szt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1szt/nostruct-align/1szt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1szt/nostruct-align/1szt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22389/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.198364 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1t1dA id: 1t1dA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1t1dA/nostruct-align/1t1dA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1t1dA/nostruct-align/1t1dA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1t1dA/nostruct-align/1t1dA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30182/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.603394 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1t7pA id: 1t7pA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1t7pA/nostruct-align/1t7pA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1t7pA/nostruct-align/1t7pA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1t7pA/nostruct-align/1t7pA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15848/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.982422 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tabI id: 1tabI alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tabI/nostruct-align/1tabI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tabI/nostruct-align/1tabI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tabI/nostruct-align/1tabI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1263/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.766357 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tac id: 1tac alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tac/nostruct-align/1tac.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tac/nostruct-align/1tac.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tac/nostruct-align/1tac.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20494/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.409424 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tadA_1 id: 1tadA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1t/1tadA_1/nostruct-align/1tadA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1t/1tadA_1/nostruct-align/1tadA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1t/1tadA_1/nostruct-align/1tadA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8512/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.937500 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tadA_2 id: 1tadA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1t/1tadA_2/nostruct-align/1tadA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1t/1tadA_2/nostruct-align/1tadA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1t/1tadA_2/nostruct-align/1tadA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17123/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.405457 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tafA id: 1tafA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tafA/nostruct-align/1tafA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tafA/nostruct-align/1tafA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tafA/nostruct-align/1tafA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26948/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.984375 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tafB id: 1tafB alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tafB/nostruct-align/1tafB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tafB/nostruct-align/1tafB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tafB/nostruct-align/1tafB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17821/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.770386 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tag id: 1tag alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tag/nostruct-align/1tag.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tag/nostruct-align/1tag.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tag/nostruct-align/1tag.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29266/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.931396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tahA id: 1tahA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tahA/nostruct-align/1tahA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tahA/nostruct-align/1tahA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tahA/nostruct-align/1tahA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32433/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.991455 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tahB id: 1tahB alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tahB/nostruct-align/1tahB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tahB/nostruct-align/1tahB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tahB/nostruct-align/1tahB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30892/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.898438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tam id: 1tam alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tam/nostruct-align/1tam.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tam/nostruct-align/1tam.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tam/nostruct-align/1tam.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16225/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.666382 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tap id: 1tap alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tap/nostruct-align/1tap.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tap/nostruct-align/1tap.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tap/nostruct-align/1tap.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31379/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.204407 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1taq id: 1taq alignment found: /projects/compbio/experiments/models.97/pdb/1t/1taq/nostruct-align/1taq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1taq/nostruct-align/1taq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1taq/nostruct-align/1taq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29111/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.464355 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1taxA id: 1taxA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1taxA/nostruct-align/1taxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1taxA/nostruct-align/1taxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1taxA/nostruct-align/1taxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13132/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.977417 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tbaA id: 1tbaA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tbaA/nostruct-align/1tbaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tbaA/nostruct-align/1tbaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tbaA/nostruct-align/1tbaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29493/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.810425 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tbgA id: 1tbgA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tbgA/nostruct-align/1tbgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tbgA/nostruct-align/1tbgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tbgA/nostruct-align/1tbgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26706/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.747437 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tbgE id: 1tbgE alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tbgE/nostruct-align/1tbgE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tbgE/nostruct-align/1tbgE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tbgE/nostruct-align/1tbgE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1415/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.296509 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tbn id: 1tbn alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tbn/nostruct-align/1tbn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tbn/nostruct-align/1tbn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tbn/nostruct-align/1tbn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6938/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.152466 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tbrR id: 1tbrR alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tbrR/nostruct-align/1tbrR.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tbrR/nostruct-align/1tbrR.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tbrR/nostruct-align/1tbrR.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29957/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.321472 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tc1A id: 1tc1A alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tc1A/nostruct-align/1tc1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tc1A/nostruct-align/1tc1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tc1A/nostruct-align/1tc1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5256/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.304382 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tc3C id: 1tc3C alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tc3C/nostruct-align/1tc3C.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tc3C/nostruct-align/1tc3C.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tc3C/nostruct-align/1tc3C.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13041/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.925415 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tca id: 1tca alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tca/nostruct-align/1tca.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tca/nostruct-align/1tca.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tca/nostruct-align/1tca.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12624/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.007385 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tcrA id: 1tcrA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tcrA/nostruct-align/1tcrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tcrA/nostruct-align/1tcrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tcrA/nostruct-align/1tcrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31205/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.706421 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tde_1 id: 1tde_1 alignment found: /projects/compbio4/experiments/models.97/domains/1t/1tde_1/nostruct-align/1tde_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1t/1tde_1/nostruct-align/1tde_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1t/1tde_1/nostruct-align/1tde_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2882/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -23.640381 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tde_2 id: 1tde_2 alignment found: /projects/compbio4/experiments/models.97/domains/1t/1tde_2/nostruct-align/1tde_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1t/1tde_2/nostruct-align/1tde_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1t/1tde_2/nostruct-align/1tde_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9959/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -22.533447 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tdj id: 1tdj alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tdj/nostruct-align/1tdj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tdj/nostruct-align/1tdj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tdj/nostruct-align/1tdj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20560/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.740479 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tdtA id: 1tdtA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tdtA/nostruct-align/1tdtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tdtA/nostruct-align/1tdtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tdtA/nostruct-align/1tdtA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17802/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.354431 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ten id: 1ten alignment found: /projects/compbio/experiments/models.97/pdb/1t/1ten/nostruct-align/1ten.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1ten/nostruct-align/1ten.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1ten/nostruct-align/1ten.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16298/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.697388 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tetL id: 1tetL alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tetL/nostruct-align/1tetL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tetL/nostruct-align/1tetL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tetL/nostruct-align/1tetL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5430/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.250366 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tf4A id: 1tf4A alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tf4A/nostruct-align/1tf4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tf4A/nostruct-align/1tf4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tf4A/nostruct-align/1tf4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7222/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.480347 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tf6A id: 1tf6A alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tf6A/nostruct-align/1tf6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tf6A/nostruct-align/1tf6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tf6A/nostruct-align/1tf6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17750/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.329468 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tfa id: 1tfa alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tfa/nostruct-align/1tfa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tfa/nostruct-align/1tfa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tfa/nostruct-align/1tfa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7462/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.513489 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tfb id: 1tfb alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tfb/nostruct-align/1tfb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tfb/nostruct-align/1tfb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tfb/nostruct-align/1tfb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19328/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.314453 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tfe id: 1tfe alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tfe/nostruct-align/1tfe.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tfe/nostruct-align/1tfe.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tfe/nostruct-align/1tfe.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14981/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.556335 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tfg id: 1tfg alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tfg/nostruct-align/1tfg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tfg/nostruct-align/1tfg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tfg/nostruct-align/1tfg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26543/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.594421 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tfi id: 1tfi alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tfi/nostruct-align/1tfi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tfi/nostruct-align/1tfi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tfi/nostruct-align/1tfi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6085/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.285400 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tfpA id: 1tfpA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tfpA/nostruct-align/1tfpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tfpA/nostruct-align/1tfpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tfpA/nostruct-align/1tfpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13310/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.778320 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tfr id: 1tfr alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tfr/nostruct-align/1tfr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tfr/nostruct-align/1tfr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tfr/nostruct-align/1tfr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9584/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.330322 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tgoA id: 1tgoA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tgoA/nostruct-align/1tgoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tgoA/nostruct-align/1tgoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tgoA/nostruct-align/1tgoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29192/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.549377 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tgsI id: 1tgsI alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tgsI/nostruct-align/1tgsI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tgsI/nostruct-align/1tgsI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tgsI/nostruct-align/1tgsI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22735/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.633362 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tgxA id: 1tgxA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tgxA/nostruct-align/1tgxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tgxA/nostruct-align/1tgxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tgxA/nostruct-align/1tgxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4661/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.581360 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1theA id: 1theA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1theA/nostruct-align/1theA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1theA/nostruct-align/1theA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1theA/nostruct-align/1theA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25980/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.068481 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1theB id: 1theB alignment found: /projects/compbio/experiments/models.97/pdb/1t/1theB/nostruct-align/1theB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1theB/nostruct-align/1theB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1theB/nostruct-align/1theB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17700/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.779419 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1thg id: 1thg alignment found: /projects/compbio/experiments/models.97/pdb/1t/1thg/nostruct-align/1thg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1thg/nostruct-align/1thg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1thg/nostruct-align/1thg.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-527/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.360474 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1thjA id: 1thjA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1thjA/nostruct-align/1thjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1thjA/nostruct-align/1thjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1thjA/nostruct-align/1thjA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2101/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.843445 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1thm id: 1thm alignment found: /projects/compbio/experiments/models.97/pdb/1t/1thm/nostruct-align/1thm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1thm/nostruct-align/1thm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1thm/nostruct-align/1thm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13228/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.063354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1thtA id: 1thtA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1thtA/nostruct-align/1thtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1thtA/nostruct-align/1thtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1thtA/nostruct-align/1thtA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6253/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.969360 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1thv id: 1thv alignment found: /projects/compbio/experiments/models.97/pdb/1t/1thv/nostruct-align/1thv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1thv/nostruct-align/1thv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1thv/nostruct-align/1thv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25201/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.890381 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1thw id: 1thw alignment found: /projects/compbio/experiments/models.97/pdb/1t/1thw/nostruct-align/1thw.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1thw/nostruct-align/1thw.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1thw/nostruct-align/1thw.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8673/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.853394 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1thx id: 1thx alignment found: /projects/compbio/experiments/models.97/pdb/1t/1thx/nostruct-align/1thx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1thx/nostruct-align/1thx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1thx/nostruct-align/1thx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1152/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.816406 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tia id: 1tia alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tia/nostruct-align/1tia.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tia/nostruct-align/1tia.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tia/nostruct-align/1tia.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file ./tmp/tmp-build-weighted-model-purr-5011/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.177490 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tib id: 1tib alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tib/nostruct-align/1tib.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tib/nostruct-align/1tib.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tib/nostruct-align/1tib.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1486/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.861450 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tie id: 1tie alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tie/nostruct-align/1tie.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tie/nostruct-align/1tie.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tie/nostruct-align/1tie.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-12319/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.298401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tif id: 1tif alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tif/nostruct-align/1tif.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tif/nostruct-align/1tif.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tif/nostruct-align/1tif.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20142/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.778442 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tig id: 1tig alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tig/nostruct-align/1tig.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tig/nostruct-align/1tig.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tig/nostruct-align/1tig.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14346/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.122375 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tiiC id: 1tiiC alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tiiC/nostruct-align/1tiiC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tiiC/nostruct-align/1tiiC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tiiC/nostruct-align/1tiiC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19220/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.637329 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tiiD id: 1tiiD alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tiiD/nostruct-align/1tiiD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tiiD/nostruct-align/1tiiD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tiiD/nostruct-align/1tiiD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6792/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.511414 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tin id: 1tin alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tin/nostruct-align/1tin.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tin/nostruct-align/1tin.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tin/nostruct-align/1tin.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-7167/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.320374 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tit id: 1tit alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tit/nostruct-align/1tit.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tit/nostruct-align/1tit.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tit/nostruct-align/1tit.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28488/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.043335 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tiu id: 1tiu alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tiu/nostruct-align/1tiu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tiu/nostruct-align/1tiu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tiu/nostruct-align/1tiu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32457/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.556458 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tiv id: 1tiv alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tiv/nostruct-align/1tiv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tiv/nostruct-align/1tiv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tiv/nostruct-align/1tiv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30642/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.564331 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tkaA id: 1tkaA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tkaA/nostruct-align/1tkaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tkaA/nostruct-align/1tkaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tkaA/nostruct-align/1tkaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31942/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.093384 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tkiA id: 1tkiA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tkiA/nostruct-align/1tkiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tkiA/nostruct-align/1tkiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tkiA/nostruct-align/1tkiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8433/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.560425 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tl2A id: 1tl2A alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tl2A/nostruct-align/1tl2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tl2A/nostruct-align/1tl2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tl2A/nostruct-align/1tl2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12352/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.929321 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tle id: 1tle alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tle/nostruct-align/1tle.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tle/nostruct-align/1tle.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tle/nostruct-align/1tle.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7902/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.152405 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tlfA id: 1tlfA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tlfA/nostruct-align/1tlfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tlfA/nostruct-align/1tlfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tlfA/nostruct-align/1tlfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1241/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.930359 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tlk id: 1tlk alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tlk/nostruct-align/1tlk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tlk/nostruct-align/1tlk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tlk/nostruct-align/1tlk.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9343/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.966431 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tme1 id: 1tme1 alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tme1/nostruct-align/1tme1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tme1/nostruct-align/1tme1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tme1/nostruct-align/1tme1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25265/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.122437 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tmf4 id: 1tmf4 alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tmf4/nostruct-align/1tmf4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tmf4/nostruct-align/1tmf4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tmf4/nostruct-align/1tmf4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27594/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.357300 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tml id: 1tml alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tml/nostruct-align/1tml.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tml/nostruct-align/1tml.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tml/nostruct-align/1tml.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15434/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.691406 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tmy id: 1tmy alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tmy/nostruct-align/1tmy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tmy/nostruct-align/1tmy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tmy/nostruct-align/1tmy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17498/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.185425 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tmzA id: 1tmzA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tmzA/nostruct-align/1tmzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tmzA/nostruct-align/1tmzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tmzA/nostruct-align/1tmzA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25239/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.468384 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tnfA id: 1tnfA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tnfA/nostruct-align/1tnfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tnfA/nostruct-align/1tnfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tnfA/nostruct-align/1tnfA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-11989/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.316406 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tnm id: 1tnm alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tnm/nostruct-align/1tnm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tnm/nostruct-align/1tnm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tnm/nostruct-align/1tnm.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-31041/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.930420 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tnrA id: 1tnrA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tnrA/nostruct-align/1tnrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tnrA/nostruct-align/1tnrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tnrA/nostruct-align/1tnrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26137/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.570435 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tns id: 1tns alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tns/nostruct-align/1tns.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tns/nostruct-align/1tns.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tns/nostruct-align/1tns.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8816/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.771362 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1toaA id: 1toaA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1toaA/nostruct-align/1toaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1toaA/nostruct-align/1toaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1toaA/nostruct-align/1toaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5433/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.769409 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tocR id: 1tocR alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tocR/nostruct-align/1tocR.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tocR/nostruct-align/1tocR.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tocR/nostruct-align/1tocR.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22317/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.979370 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1toh id: 1toh alignment found: /projects/compbio/experiments/models.97/pdb/1t/1toh/nostruct-align/1toh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1toh/nostruct-align/1toh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1toh/nostruct-align/1toh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31913/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.037354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ton id: 1ton alignment found: /projects/compbio/experiments/models.97/pdb/1t/1ton/nostruct-align/1ton.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1ton/nostruct-align/1ton.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1ton/nostruct-align/1ton.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12007/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.048401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tpfA id: 1tpfA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tpfA/nostruct-align/1tpfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tpfA/nostruct-align/1tpfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tpfA/nostruct-align/1tpfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16474/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.201416 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tpg id: 1tpg alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tpg/nostruct-align/1tpg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tpg/nostruct-align/1tpg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tpg/nostruct-align/1tpg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30234/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.163452 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tpg_1 id: 1tpg_1 alignment found: /projects/compbio4/experiments/models.97/domains/1t/1tpg_1/nostruct-align/1tpg_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1t/1tpg_1/nostruct-align/1tpg_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1t/1tpg_1/nostruct-align/1tpg_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15793/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.146484 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tpg_2 id: 1tpg_2 alignment found: /projects/compbio4/experiments/models.97/domains/1t/1tpg_2/nostruct-align/1tpg_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1t/1tpg_2/nostruct-align/1tpg_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1t/1tpg_2/nostruct-align/1tpg_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28130/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.461426 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tph1 id: 1tph1 alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tph1/nostruct-align/1tph1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tph1/nostruct-align/1tph1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tph1/nostruct-align/1tph1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18848/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.109375 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tplA id: 1tplA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tplA/nostruct-align/1tplA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tplA/nostruct-align/1tplA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tplA/nostruct-align/1tplA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2344/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.573425 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tpm id: 1tpm alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tpm/nostruct-align/1tpm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tpm/nostruct-align/1tpm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tpm/nostruct-align/1tpm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20214/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.461426 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tpt id: 1tpt alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tpt/nostruct-align/1tpt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tpt/nostruct-align/1tpt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tpt/nostruct-align/1tpt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16532/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.590332 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1trb id: 1trb alignment found: /projects/compbio/experiments/models.97/pdb/1t/1trb/nostruct-align/1trb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1trb/nostruct-align/1trb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1trb/nostruct-align/1trb.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7104/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -27.946411 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1trkA id: 1trkA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1trkA/nostruct-align/1trkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1trkA/nostruct-align/1trkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1trkA/nostruct-align/1trkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8456/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.024353 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1trkA_1 id: 1trkA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1t/1trkA_1/nostruct-align/1trkA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1t/1trkA_1/nostruct-align/1trkA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1t/1trkA_1/nostruct-align/1trkA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5762/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.262329 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1trkA_2 id: 1trkA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1t/1trkA_2/nostruct-align/1trkA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1t/1trkA_2/nostruct-align/1trkA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1t/1trkA_2/nostruct-align/1trkA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3039/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.608398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1trkA_3 id: 1trkA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1t/1trkA_3/nostruct-align/1trkA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1t/1trkA_3/nostruct-align/1trkA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1t/1trkA_3/nostruct-align/1trkA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22420/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.020447 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1try id: 1try alignment found: /projects/compbio/experiments/models.97/pdb/1t/1try/nostruct-align/1try.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1try/nostruct-align/1try.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1try/nostruct-align/1try.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16441/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.566345 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tsg id: 1tsg alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tsg/nostruct-align/1tsg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tsg/nostruct-align/1tsg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tsg/nostruct-align/1tsg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9012/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.349426 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tsm id: 1tsm alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tsm/nostruct-align/1tsm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tsm/nostruct-align/1tsm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tsm/nostruct-align/1tsm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5465/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.212402 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tsp id: 1tsp alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tsp/nostruct-align/1tsp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tsp/nostruct-align/1tsp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tsp/nostruct-align/1tsp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4800/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.118347 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tssA_1 id: 1tssA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1t/1tssA_1/nostruct-align/1tssA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1t/1tssA_1/nostruct-align/1tssA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1t/1tssA_1/nostruct-align/1tssA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15046/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.646362 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tssA_2 id: 1tssA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1t/1tssA_2/nostruct-align/1tssA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1t/1tssA_2/nostruct-align/1tssA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1t/1tssA_2/nostruct-align/1tssA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26701/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.943481 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ttbA id: 1ttbA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1ttbA/nostruct-align/1ttbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1ttbA/nostruct-align/1ttbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1ttbA/nostruct-align/1ttbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2730/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.837402 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tubA id: 1tubA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tubA/nostruct-align/1tubA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tubA/nostruct-align/1tubA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tubA/nostruct-align/1tubA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24688/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.350342 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tuc id: 1tuc alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tuc/nostruct-align/1tuc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tuc/nostruct-align/1tuc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tuc/nostruct-align/1tuc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20149/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.601318 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tud id: 1tud alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tud/nostruct-align/1tud.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tud/nostruct-align/1tud.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tud/nostruct-align/1tud.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5588/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.073486 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tul id: 1tul alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tul/nostruct-align/1tul.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tul/nostruct-align/1tul.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tul/nostruct-align/1tul.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8019/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.020447 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tum id: 1tum alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tum/nostruct-align/1tum.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tum/nostruct-align/1tum.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tum/nostruct-align/1tum.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26503/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.300415 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tupA id: 1tupA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tupA/nostruct-align/1tupA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tupA/nostruct-align/1tupA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tupA/nostruct-align/1tupA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9707/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.956421 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tux id: 1tux alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tux/nostruct-align/1tux.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tux/nostruct-align/1tux.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tux/nostruct-align/1tux.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29160/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.493408 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tvdA id: 1tvdA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tvdA/nostruct-align/1tvdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tvdA/nostruct-align/1tvdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tvdA/nostruct-align/1tvdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27427/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.845459 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tvs id: 1tvs alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tvs/nostruct-align/1tvs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tvs/nostruct-align/1tvs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tvs/nostruct-align/1tvs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14299/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.004395 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tvt id: 1tvt alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tvt/nostruct-align/1tvt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tvt/nostruct-align/1tvt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tvt/nostruct-align/1tvt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28983/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.004395 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tvxA id: 1tvxA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tvxA/nostruct-align/1tvxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tvxA/nostruct-align/1tvxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tvxA/nostruct-align/1tvxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10184/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.290405 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tvxB id: 1tvxB alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tvxB/nostruct-align/1tvxB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tvxB/nostruct-align/1tvxB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tvxB/nostruct-align/1tvxB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23752/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.315369 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tx4A id: 1tx4A alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tx4A/nostruct-align/1tx4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tx4A/nostruct-align/1tx4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tx4A/nostruct-align/1tx4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10163/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.225464 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1txb id: 1txb alignment found: /projects/compbio/experiments/models.97/pdb/1t/1txb/nostruct-align/1txb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1txb/nostruct-align/1txb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1txb/nostruct-align/1txb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-955/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.247437 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1txm id: 1txm alignment found: /projects/compbio/experiments/models.97/pdb/1t/1txm/nostruct-align/1txm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1txm/nostruct-align/1txm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1txm/nostruct-align/1txm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-44/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.881409 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tyfA id: 1tyfA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tyfA/nostruct-align/1tyfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tyfA/nostruct-align/1tyfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tyfA/nostruct-align/1tyfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6534/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.676392 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tys id: 1tys alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tys/nostruct-align/1tys.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tys/nostruct-align/1tys.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tys/nostruct-align/1tys.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21847/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.485352 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1tyv id: 1tyv alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tyv/nostruct-align/1tyv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tyv/nostruct-align/1tyv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tyv/nostruct-align/1tyv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22469/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.541321 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1u2fA id: 1u2fA alignment found: /projects/compbio/experiments/models.97/pdb/1u/1u2fA/nostruct-align/1u2fA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1u2fA/nostruct-align/1u2fA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1u2fA/nostruct-align/1u2fA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12752/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.672485 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1u9aA id: 1u9aA alignment found: /projects/compbio/experiments/models.97/pdb/1u/1u9aA/nostruct-align/1u9aA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1u9aA/nostruct-align/1u9aA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1u9aA/nostruct-align/1u9aA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9065/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.981323 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1uaaA id: 1uaaA alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uaaA/nostruct-align/1uaaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uaaA/nostruct-align/1uaaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1uaaA/nostruct-align/1uaaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13020/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.027466 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1uae id: 1uae alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uae/nostruct-align/1uae.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uae/nostruct-align/1uae.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1uae/nostruct-align/1uae.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9861/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.547363 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1uag id: 1uag alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uag/nostruct-align/1uag.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uag/nostruct-align/1uag.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1uag/nostruct-align/1uag.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23846/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.793396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ubi id: 1ubi alignment found: /projects/compbio/experiments/models.97/pdb/1u/1ubi/nostruct-align/1ubi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1ubi/nostruct-align/1ubi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1ubi/nostruct-align/1ubi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24885/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.192383 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ubpA id: 1ubpA alignment found: /projects/compbio/experiments/models.97/pdb/1u/1ubpA/nostruct-align/1ubpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1ubpA/nostruct-align/1ubpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1ubpA/nostruct-align/1ubpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-82/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.274414 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ubpB id: 1ubpB alignment found: /projects/compbio/experiments/models.97/pdb/1u/1ubpB/nostruct-align/1ubpB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1ubpB/nostruct-align/1ubpB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1ubpB/nostruct-align/1ubpB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24478/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.544373 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ubpC id: 1ubpC alignment found: /projects/compbio/experiments/models.97/pdb/1u/1ubpC/nostruct-align/1ubpC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1ubpC/nostruct-align/1ubpC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1ubpC/nostruct-align/1ubpC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22502/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.297424 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1uby id: 1uby alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uby/nostruct-align/1uby.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uby/nostruct-align/1uby.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1uby/nostruct-align/1uby.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27188/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.609375 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1uch id: 1uch alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uch/nostruct-align/1uch.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uch/nostruct-align/1uch.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1uch/nostruct-align/1uch.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29031/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.703491 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1udc id: 1udc alignment found: /projects/compbio/experiments/models.97/pdb/1u/1udc/nostruct-align/1udc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1udc/nostruct-align/1udc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1udc/nostruct-align/1udc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20119/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -19.762390 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1udg id: 1udg alignment found: /projects/compbio/experiments/models.97/pdb/1u/1udg/nostruct-align/1udg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1udg/nostruct-align/1udg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1udg/nostruct-align/1udg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17189/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.018433 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1udh id: 1udh alignment found: /projects/compbio/experiments/models.97/pdb/1u/1udh/nostruct-align/1udh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1udh/nostruct-align/1udh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1udh/nostruct-align/1udh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5264/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.165344 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1udiI id: 1udiI alignment found: /projects/compbio/experiments/models.97/pdb/1u/1udiI/nostruct-align/1udiI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1udiI/nostruct-align/1udiI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1udiI/nostruct-align/1udiI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16755/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.255432 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ughI id: 1ughI alignment found: /projects/compbio/experiments/models.97/pdb/1u/1ughI/nostruct-align/1ughI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1ughI/nostruct-align/1ughI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1ughI/nostruct-align/1ughI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31490/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.217407 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ugiA id: 1ugiA alignment found: /projects/compbio/experiments/models.97/pdb/1u/1ugiA/nostruct-align/1ugiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1ugiA/nostruct-align/1ugiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1ugiA/nostruct-align/1ugiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12540/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.255432 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ukz id: 1ukz alignment found: /projects/compbio/experiments/models.97/pdb/1u/1ukz/nostruct-align/1ukz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1ukz/nostruct-align/1ukz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1ukz/nostruct-align/1ukz.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24961/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.517456 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ulo id: 1ulo alignment found: /projects/compbio/experiments/models.97/pdb/1u/1ulo/nostruct-align/1ulo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1ulo/nostruct-align/1ulo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1ulo/nostruct-align/1ulo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17518/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.225342 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ulp id: 1ulp alignment found: /projects/compbio/experiments/models.97/pdb/1u/1ulp/nostruct-align/1ulp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1ulp/nostruct-align/1ulp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1ulp/nostruct-align/1ulp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2321/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.405396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1umuA id: 1umuA alignment found: /projects/compbio/experiments/models.97/pdb/1u/1umuA/nostruct-align/1umuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1umuA/nostruct-align/1umuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1umuA/nostruct-align/1umuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29761/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.128418 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1umuB id: 1umuB alignment found: /projects/compbio/experiments/models.97/pdb/1u/1umuB/nostruct-align/1umuB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1umuB/nostruct-align/1umuB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1umuB/nostruct-align/1umuB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26021/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.226440 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1une id: 1une alignment found: /projects/compbio/experiments/models.97/pdb/1u/1une/nostruct-align/1une.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1une/nostruct-align/1une.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1une/nostruct-align/1une.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12098/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.633423 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1unkA id: 1unkA alignment found: /projects/compbio/experiments/models.97/pdb/1u/1unkA/nostruct-align/1unkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1unkA/nostruct-align/1unkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1unkA/nostruct-align/1unkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1880/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.284424 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1uok id: 1uok alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uok/nostruct-align/1uok.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uok/nostruct-align/1uok.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1uok/nostruct-align/1uok.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6837/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.229492 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1uox id: 1uox alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uox/nostruct-align/1uox.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uox/nostruct-align/1uox.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1uox/nostruct-align/1uox.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31822/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.700439 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1urnA id: 1urnA alignment found: /projects/compbio/experiments/models.97/pdb/1u/1urnA/nostruct-align/1urnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1urnA/nostruct-align/1urnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1urnA/nostruct-align/1urnA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22963/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.134399 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1uroA id: 1uroA alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uroA/nostruct-align/1uroA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uroA/nostruct-align/1uroA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1uroA/nostruct-align/1uroA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9632/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.311462 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ush id: 1ush alignment found: /projects/compbio/experiments/models.97/pdb/1u/1ush/nostruct-align/1ush.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1ush/nostruct-align/1ush.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1ush/nostruct-align/1ush.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20602/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.729370 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1uteA id: 1uteA alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uteA/nostruct-align/1uteA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uteA/nostruct-align/1uteA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1uteA/nostruct-align/1uteA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28514/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.562378 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1utg id: 1utg alignment found: /projects/compbio/experiments/models.97/pdb/1u/1utg/nostruct-align/1utg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1utg/nostruct-align/1utg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1utg/nostruct-align/1utg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19769/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.330444 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1uwoA id: 1uwoA alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uwoA/nostruct-align/1uwoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uwoA/nostruct-align/1uwoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1uwoA/nostruct-align/1uwoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26822/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.073486 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1uxc id: 1uxc alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uxc/nostruct-align/1uxc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uxc/nostruct-align/1uxc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1uxc/nostruct-align/1uxc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5092/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.104492 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1uxd id: 1uxd alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uxd/nostruct-align/1uxd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uxd/nostruct-align/1uxd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1uxd/nostruct-align/1uxd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30147/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.066406 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1uxy id: 1uxy alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uxy/nostruct-align/1uxy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uxy/nostruct-align/1uxy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1uxy/nostruct-align/1uxy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26754/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.955383 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1v39 id: 1v39 alignment found: /projects/compbio/experiments/models.97/pdb/1v/1v39/nostruct-align/1v39.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1v39/nostruct-align/1v39.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1v39/nostruct-align/1v39.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12611/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.002380 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vapA id: 1vapA alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vapA/nostruct-align/1vapA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vapA/nostruct-align/1vapA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vapA/nostruct-align/1vapA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2984/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.623413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vbd4 id: 1vbd4 alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vbd4/nostruct-align/1vbd4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vbd4/nostruct-align/1vbd4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vbd4/nostruct-align/1vbd4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1638/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.820312 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vcaA id: 1vcaA alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vcaA/nostruct-align/1vcaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vcaA/nostruct-align/1vcaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vcaA/nostruct-align/1vcaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3563/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.686401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vcaA_1 id: 1vcaA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1v/1vcaA_1/nostruct-align/1vcaA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1v/1vcaA_1/nostruct-align/1vcaA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1v/1vcaA_1/nostruct-align/1vcaA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18925/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.955444 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vcaA_2 id: 1vcaA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1v/1vcaA_2/nostruct-align/1vcaA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1v/1vcaA_2/nostruct-align/1vcaA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1v/1vcaA_2/nostruct-align/1vcaA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4681/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.623413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vcbA id: 1vcbA alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vcbA/nostruct-align/1vcbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vcbA/nostruct-align/1vcbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vcbA/nostruct-align/1vcbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6359/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.468384 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vcbB id: 1vcbB alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vcbB/nostruct-align/1vcbB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vcbB/nostruct-align/1vcbB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vcbB/nostruct-align/1vcbB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11630/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.212402 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vcbC id: 1vcbC alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vcbC/nostruct-align/1vcbC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vcbC/nostruct-align/1vcbC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vcbC/nostruct-align/1vcbC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11819/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.101379 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vcc id: 1vcc alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vcc/nostruct-align/1vcc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vcc/nostruct-align/1vcc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vcc/nostruct-align/1vcc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7416/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.364380 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vdeA id: 1vdeA alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vdeA/nostruct-align/1vdeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vdeA/nostruct-align/1vdeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vdeA/nostruct-align/1vdeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26732/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.201355 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vdfA id: 1vdfA alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vdfA/nostruct-align/1vdfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vdfA/nostruct-align/1vdfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vdfA/nostruct-align/1vdfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23956/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.128418 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vdrA id: 1vdrA alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vdrA/nostruct-align/1vdrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vdrA/nostruct-align/1vdrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vdrA/nostruct-align/1vdrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4533/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.263306 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vfaB id: 1vfaB alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vfaB/nostruct-align/1vfaB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vfaB/nostruct-align/1vfaB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vfaB/nostruct-align/1vfaB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4335/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.131470 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vfbA id: 1vfbA alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vfbA/nostruct-align/1vfbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vfbA/nostruct-align/1vfbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vfbA/nostruct-align/1vfbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31632/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.949463 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vfrA id: 1vfrA alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vfrA/nostruct-align/1vfrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vfrA/nostruct-align/1vfrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vfrA/nostruct-align/1vfrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9516/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.674438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vfyA id: 1vfyA alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vfyA/nostruct-align/1vfyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vfyA/nostruct-align/1vfyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vfyA/nostruct-align/1vfyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-371/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.914368 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vhh id: 1vhh alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vhh/nostruct-align/1vhh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vhh/nostruct-align/1vhh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vhh/nostruct-align/1vhh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30398/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.716370 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vhiA id: 1vhiA alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vhiA/nostruct-align/1vhiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vhiA/nostruct-align/1vhiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vhiA/nostruct-align/1vhiA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23066/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.996460 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vhrA id: 1vhrA alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vhrA/nostruct-align/1vhrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vhrA/nostruct-align/1vhrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vhrA/nostruct-align/1vhrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3246/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.623413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vib id: 1vib alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vib/nostruct-align/1vib.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vib/nostruct-align/1vib.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vib/nostruct-align/1vib.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13666/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.070435 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vid id: 1vid alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vid/nostruct-align/1vid.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vid/nostruct-align/1vid.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vid/nostruct-align/1vid.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32757/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -20.477356 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vie id: 1vie alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vie/nostruct-align/1vie.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vie/nostruct-align/1vie.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vie/nostruct-align/1vie.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29777/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.005371 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vig id: 1vig alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vig/nostruct-align/1vig.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vig/nostruct-align/1vig.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vig/nostruct-align/1vig.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-153/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.152466 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vih id: 1vih alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vih/nostruct-align/1vih.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vih/nostruct-align/1vih.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vih/nostruct-align/1vih.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3872/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.152466 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vii id: 1vii alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vii/nostruct-align/1vii.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vii/nostruct-align/1vii.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vii/nostruct-align/1vii.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23340/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.549438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vin id: 1vin alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vin/nostruct-align/1vin.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vin/nostruct-align/1vin.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vin/nostruct-align/1vin.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14037/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.761353 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vjs id: 1vjs alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vjs/nostruct-align/1vjs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vjs/nostruct-align/1vjs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vjs/nostruct-align/1vjs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8922/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.747314 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vjw id: 1vjw alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vjw/nostruct-align/1vjw.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vjw/nostruct-align/1vjw.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vjw/nostruct-align/1vjw.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4891/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.860474 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vkxA id: 1vkxA alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vkxA/nostruct-align/1vkxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vkxA/nostruct-align/1vkxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vkxA/nostruct-align/1vkxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15108/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.386414 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vls id: 1vls alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vls/nostruct-align/1vls.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vls/nostruct-align/1vls.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vls/nostruct-align/1vls.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10134/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.716309 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vmoA id: 1vmoA alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vmoA/nostruct-align/1vmoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vmoA/nostruct-align/1vmoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vmoA/nostruct-align/1vmoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5513/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.970459 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vns id: 1vns alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vns/nostruct-align/1vns.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vns/nostruct-align/1vns.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vns/nostruct-align/1vns.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5425/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.163452 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vom id: 1vom alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vom/nostruct-align/1vom.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vom/nostruct-align/1vom.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vom/nostruct-align/1vom.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25251/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.780457 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vpc id: 1vpc alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vpc/nostruct-align/1vpc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vpc/nostruct-align/1vpc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vpc/nostruct-align/1vpc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14341/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.733398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vpfA id: 1vpfA alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vpfA/nostruct-align/1vpfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vpfA/nostruct-align/1vpfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vpfA/nostruct-align/1vpfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26230/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.857361 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vppX id: 1vppX alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vppX/nostruct-align/1vppX.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vppX/nostruct-align/1vppX.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vppX/nostruct-align/1vppX.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19973/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.641418 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vpsA id: 1vpsA alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vpsA/nostruct-align/1vpsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vpsA/nostruct-align/1vpsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vpsA/nostruct-align/1vpsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20747/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.124390 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vpsB id: 1vpsB alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vpsB/nostruct-align/1vpsB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vpsB/nostruct-align/1vpsB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vpsB/nostruct-align/1vpsB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2052/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.246399 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vpu id: 1vpu alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vpu/nostruct-align/1vpu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vpu/nostruct-align/1vpu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vpu/nostruct-align/1vpu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15648/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.119385 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vqb id: 1vqb alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vqb/nostruct-align/1vqb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vqb/nostruct-align/1vqb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vqb/nostruct-align/1vqb.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-24048/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.699463 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vrkB id: 1vrkB alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vrkB/nostruct-align/1vrkB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vrkB/nostruct-align/1vrkB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vrkB/nostruct-align/1vrkB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18494/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.632446 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vsd id: 1vsd alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vsd/nostruct-align/1vsd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vsd/nostruct-align/1vsd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vsd/nostruct-align/1vsd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29104/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.383423 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vsgA id: 1vsgA alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vsgA/nostruct-align/1vsgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vsgA/nostruct-align/1vsgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vsgA/nostruct-align/1vsgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23446/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.399414 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vsrA id: 1vsrA alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vsrA/nostruct-align/1vsrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vsrA/nostruct-align/1vsrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vsrA/nostruct-align/1vsrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30969/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.238403 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vtmP id: 1vtmP alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vtmP/nostruct-align/1vtmP.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vtmP/nostruct-align/1vtmP.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vtmP/nostruct-align/1vtmP.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17657/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.112427 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1vtx id: 1vtx alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vtx/nostruct-align/1vtx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vtx/nostruct-align/1vtx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vtx/nostruct-align/1vtx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28108/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.147400 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1wab id: 1wab alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wab/nostruct-align/1wab.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wab/nostruct-align/1wab.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1wab/nostruct-align/1wab.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20527/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.217407 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1wad id: 1wad alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wad/nostruct-align/1wad.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wad/nostruct-align/1wad.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1wad/nostruct-align/1wad.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27898/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.240356 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1wapA id: 1wapA alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wapA/nostruct-align/1wapA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wapA/nostruct-align/1wapA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1wapA/nostruct-align/1wapA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2950/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.701355 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1wba id: 1wba alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wba/nostruct-align/1wba.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wba/nostruct-align/1wba.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1wba/nostruct-align/1wba.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32429/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.870361 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1wdcA id: 1wdcA alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wdcA/nostruct-align/1wdcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wdcA/nostruct-align/1wdcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1wdcA/nostruct-align/1wdcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22592/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.254395 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1wdcB id: 1wdcB alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wdcB/nostruct-align/1wdcB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wdcB/nostruct-align/1wdcB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1wdcB/nostruct-align/1wdcB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20619/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.960449 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1wdcC id: 1wdcC alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wdcC/nostruct-align/1wdcC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wdcC/nostruct-align/1wdcC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1wdcC/nostruct-align/1wdcC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31271/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.135376 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1wdnA id: 1wdnA alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wdnA/nostruct-align/1wdnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wdnA/nostruct-align/1wdnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1wdnA/nostruct-align/1wdnA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32309/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.838379 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1wer id: 1wer alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wer/nostruct-align/1wer.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wer/nostruct-align/1wer.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1wer/nostruct-align/1wer.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12121/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.567383 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1wfbA id: 1wfbA alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wfbA/nostruct-align/1wfbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wfbA/nostruct-align/1wfbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1wfbA/nostruct-align/1wfbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17452/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.563354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1wgjA id: 1wgjA alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wgjA/nostruct-align/1wgjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wgjA/nostruct-align/1wgjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1wgjA/nostruct-align/1wgjA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9792/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.426453 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1wgtA_1 id: 1wgtA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1w/1wgtA_1/nostruct-align/1wgtA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1w/1wgtA_1/nostruct-align/1wgtA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1w/1wgtA_1/nostruct-align/1wgtA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12962/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.684448 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1wgtA_2 id: 1wgtA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1w/1wgtA_2/nostruct-align/1wgtA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1w/1wgtA_2/nostruct-align/1wgtA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1w/1wgtA_2/nostruct-align/1wgtA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21554/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.737427 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1wgtA_3 id: 1wgtA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1w/1wgtA_3/nostruct-align/1wgtA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1w/1wgtA_3/nostruct-align/1wgtA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1w/1wgtA_3/nostruct-align/1wgtA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24711/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.347412 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1wgtA_4 id: 1wgtA_4 alignment found: /projects/compbio4/experiments/models.97/domains/1w/1wgtA_4/nostruct-align/1wgtA_4.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1w/1wgtA_4/nostruct-align/1wgtA_4.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1w/1wgtA_4/nostruct-align/1wgtA_4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30998/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.340454 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1whi id: 1whi alignment found: /projects/compbio/experiments/models.97/pdb/1w/1whi/nostruct-align/1whi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1whi/nostruct-align/1whi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1whi/nostruct-align/1whi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2038/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.385437 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1who id: 1who alignment found: /projects/compbio/experiments/models.97/pdb/1w/1who/nostruct-align/1who.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1who/nostruct-align/1who.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1who/nostruct-align/1who.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18760/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.103394 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1whtA id: 1whtA alignment found: /projects/compbio/experiments/models.97/pdb/1w/1whtA/nostruct-align/1whtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1whtA/nostruct-align/1whtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1whtA/nostruct-align/1whtA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29956/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.143433 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1whtB id: 1whtB alignment found: /projects/compbio/experiments/models.97/pdb/1w/1whtB/nostruct-align/1whtB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1whtB/nostruct-align/1whtB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1whtB/nostruct-align/1whtB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6187/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.323364 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1wht_1a1 id: 1wht_1a1 alignment found: /projects/compbio4/experiments/models.97/domains/1w/1wht_1a1/nostruct-align/1wht_1a1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1w/1wht_1a1/nostruct-align/1wht_1a1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1w/1wht_1a1/nostruct-align/1wht_1a1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30521/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.153442 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1wit id: 1wit alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wit/nostruct-align/1wit.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wit/nostruct-align/1wit.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1wit/nostruct-align/1wit.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31207/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.531433 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1wjbA id: 1wjbA alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wjbA/nostruct-align/1wjbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wjbA/nostruct-align/1wjbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1wjbA/nostruct-align/1wjbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11408/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.015442 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1wkt id: 1wkt alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wkt/nostruct-align/1wkt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wkt/nostruct-align/1wkt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1wkt/nostruct-align/1wkt.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13741/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.853394 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1wod id: 1wod alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wod/nostruct-align/1wod.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wod/nostruct-align/1wod.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1wod/nostruct-align/1wod.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2450/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.501465 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1wpoB id: 1wpoB alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wpoB/nostruct-align/1wpoB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wpoB/nostruct-align/1wpoB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1wpoB/nostruct-align/1wpoB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9423/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.015442 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1wwcA id: 1wwcA alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wwcA/nostruct-align/1wwcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wwcA/nostruct-align/1wwcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1wwcA/nostruct-align/1wwcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25574/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.954346 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1x11A id: 1x11A alignment found: /projects/compbio/experiments/models.97/pdb/1x/1x11A/nostruct-align/1x11A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1x11A/nostruct-align/1x11A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1x11A/nostruct-align/1x11A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12223/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.232361 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1xbd id: 1xbd alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xbd/nostruct-align/1xbd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xbd/nostruct-align/1xbd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xbd/nostruct-align/1xbd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12661/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.450439 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1xbrA id: 1xbrA alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xbrA/nostruct-align/1xbrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xbrA/nostruct-align/1xbrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xbrA/nostruct-align/1xbrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19435/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.709351 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1xdtR id: 1xdtR alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xdtR/nostruct-align/1xdtR.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xdtR/nostruct-align/1xdtR.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xdtR/nostruct-align/1xdtR.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16045/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.085449 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1xel id: 1xel alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xel/nostruct-align/1xel.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xel/nostruct-align/1xel.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xel/nostruct-align/1xel.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25686/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -21.892395 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1xer id: 1xer alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xer/nostruct-align/1xer.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xer/nostruct-align/1xer.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xer/nostruct-align/1xer.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2482/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.263428 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1xgsA id: 1xgsA alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xgsA/nostruct-align/1xgsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xgsA/nostruct-align/1xgsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xgsA/nostruct-align/1xgsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22045/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.826355 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1xikA id: 1xikA alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xikA/nostruct-align/1xikA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xikA/nostruct-align/1xikA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xikA/nostruct-align/1xikA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13618/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.599365 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1xjo id: 1xjo alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xjo/nostruct-align/1xjo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xjo/nostruct-align/1xjo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xjo/nostruct-align/1xjo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15686/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.533447 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1xnaA id: 1xnaA alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xnaA/nostruct-align/1xnaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xnaA/nostruct-align/1xnaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xnaA/nostruct-align/1xnaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25975/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.961426 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1xnb id: 1xnb alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xnb/nostruct-align/1xnb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xnb/nostruct-align/1xnb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xnb/nostruct-align/1xnb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19572/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.290405 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1xpa id: 1xpa alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xpa/nostruct-align/1xpa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xpa/nostruct-align/1xpa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xpa/nostruct-align/1xpa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-804/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.414307 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1xrb_1 id: 1xrb_1 alignment found: /projects/compbio4/experiments/models.97/domains/1x/1xrb_1/nostruct-align/1xrb_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1x/1xrb_1/nostruct-align/1xrb_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1x/1xrb_1/nostruct-align/1xrb_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19832/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.684448 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1xrb_2 id: 1xrb_2 alignment found: /projects/compbio4/experiments/models.97/domains/1x/1xrb_2/nostruct-align/1xrb_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1x/1xrb_2/nostruct-align/1xrb_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1x/1xrb_2/nostruct-align/1xrb_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30282/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.419434 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1xrb_3 id: 1xrb_3 alignment found: /projects/compbio4/experiments/models.97/domains/1x/1xrb_3/nostruct-align/1xrb_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1x/1xrb_3/nostruct-align/1xrb_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1x/1xrb_3/nostruct-align/1xrb_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18098/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.551453 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1xsm id: 1xsm alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xsm/nostruct-align/1xsm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xsm/nostruct-align/1xsm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xsm/nostruct-align/1xsm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19873/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.707397 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1xsoA id: 1xsoA alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xsoA/nostruct-align/1xsoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xsoA/nostruct-align/1xsoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xsoA/nostruct-align/1xsoA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3534/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.683411 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1xtcC id: 1xtcC alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xtcC/nostruct-align/1xtcC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xtcC/nostruct-align/1xtcC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xtcC/nostruct-align/1xtcC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17455/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.946411 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1xvaA id: 1xvaA alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xvaA/nostruct-align/1xvaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xvaA/nostruct-align/1xvaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xvaA/nostruct-align/1xvaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26739/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -28.597412 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1xwl id: 1xwl alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xwl/nostruct-align/1xwl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xwl/nostruct-align/1xwl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xwl/nostruct-align/1xwl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13314/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.117432 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1xxaA id: 1xxaA alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xxaA/nostruct-align/1xxaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xxaA/nostruct-align/1xxaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xxaA/nostruct-align/1xxaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24721/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.824341 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1xxcA id: 1xxcA alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xxcA/nostruct-align/1xxcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xxcA/nostruct-align/1xxcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xxcA/nostruct-align/1xxcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5156/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.849365 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1xyn id: 1xyn alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xyn/nostruct-align/1xyn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xyn/nostruct-align/1xyn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xyn/nostruct-align/1xyn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-673/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.984497 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1xypA id: 1xypA alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xypA/nostruct-align/1xypA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xypA/nostruct-align/1xypA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xypA/nostruct-align/1xypA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19843/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.005371 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1xyzA id: 1xyzA alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xyzA/nostruct-align/1xyzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xyzA/nostruct-align/1xyzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xyzA/nostruct-align/1xyzA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26847/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.108398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1yacA id: 1yacA alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yacA/nostruct-align/1yacA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yacA/nostruct-align/1yacA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yacA/nostruct-align/1yacA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12793/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.793457 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1yagA id: 1yagA alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yagA/nostruct-align/1yagA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yagA/nostruct-align/1yagA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yagA/nostruct-align/1yagA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16006/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.528442 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1yagG id: 1yagG alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yagG/nostruct-align/1yagG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yagG/nostruct-align/1yagG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yagG/nostruct-align/1yagG.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16166/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.440308 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1yaiA id: 1yaiA alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yaiA/nostruct-align/1yaiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yaiA/nostruct-align/1yaiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yaiA/nostruct-align/1yaiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5360/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.957458 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1yasA id: 1yasA alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yasA/nostruct-align/1yasA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yasA/nostruct-align/1yasA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yasA/nostruct-align/1yasA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30880/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.136475 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ybvA id: 1ybvA alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ybvA/nostruct-align/1ybvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ybvA/nostruct-align/1ybvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1ybvA/nostruct-align/1ybvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18986/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -23.458435 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ycc id: 1ycc alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ycc/nostruct-align/1ycc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ycc/nostruct-align/1ycc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1ycc/nostruct-align/1ycc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9244/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.611450 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ycqA id: 1ycqA alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ycqA/nostruct-align/1ycqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ycqA/nostruct-align/1ycqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1ycqA/nostruct-align/1ycqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18652/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.380432 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ycsB id: 1ycsB alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ycsB/nostruct-align/1ycsB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ycsB/nostruct-align/1ycsB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1ycsB/nostruct-align/1ycsB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25709/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.681396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1yer id: 1yer alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yer/nostruct-align/1yer.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yer/nostruct-align/1yer.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yer/nostruct-align/1yer.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13087/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.141357 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1yge id: 1yge alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yge/nostruct-align/1yge.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yge/nostruct-align/1yge.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yge/nostruct-align/1yge.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12524/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.369446 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1yghA id: 1yghA alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yghA/nostruct-align/1yghA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yghA/nostruct-align/1yghA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yghA/nostruct-align/1yghA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6769/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.739441 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ygs id: 1ygs alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ygs/nostruct-align/1ygs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ygs/nostruct-align/1ygs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1ygs/nostruct-align/1ygs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29788/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.577393 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1yna id: 1yna alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yna/nostruct-align/1yna.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yna/nostruct-align/1yna.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yna/nostruct-align/1yna.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14707/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.153442 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1yptA id: 1yptA alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yptA/nostruct-align/1yptA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yptA/nostruct-align/1yptA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yptA/nostruct-align/1yptA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15781/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.160400 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1yrgA id: 1yrgA alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yrgA/nostruct-align/1yrgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yrgA/nostruct-align/1yrgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yrgA/nostruct-align/1yrgA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31990/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.636353 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1yrgB id: 1yrgB alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yrgB/nostruct-align/1yrgB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yrgB/nostruct-align/1yrgB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yrgB/nostruct-align/1yrgB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25261/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.524414 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1yrnA id: 1yrnA alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yrnA/nostruct-align/1yrnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yrnA/nostruct-align/1yrnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yrnA/nostruct-align/1yrnA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14140/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.049438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1yrnB id: 1yrnB alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yrnB/nostruct-align/1yrnB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yrnB/nostruct-align/1yrnB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yrnB/nostruct-align/1yrnB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30760/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.035400 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ysc id: 1ysc alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ysc/nostruct-align/1ysc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ysc/nostruct-align/1ysc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1ysc/nostruct-align/1ysc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28504/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.718384 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ystH id: 1ystH alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ystH/nostruct-align/1ystH.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ystH/nostruct-align/1ystH.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1ystH/nostruct-align/1ystH.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9937/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.905396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ytbA id: 1ytbA alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ytbA/nostruct-align/1ytbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ytbA/nostruct-align/1ytbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1ytbA/nostruct-align/1ytbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31885/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.332397 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ytbA_1 id: 1ytbA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1y/1ytbA_1/nostruct-align/1ytbA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1y/1ytbA_1/nostruct-align/1ytbA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1y/1ytbA_1/nostruct-align/1ytbA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2988/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.246460 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ytbA_2 id: 1ytbA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1y/1ytbA_2/nostruct-align/1ytbA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1y/1ytbA_2/nostruct-align/1ytbA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1y/1ytbA_2/nostruct-align/1ytbA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29111/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.270325 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ytfB id: 1ytfB alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ytfB/nostruct-align/1ytfB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ytfB/nostruct-align/1ytfB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1ytfB/nostruct-align/1ytfB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28930/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.807495 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ytfC id: 1ytfC alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ytfC/nostruct-align/1ytfC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ytfC/nostruct-align/1ytfC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1ytfC/nostruct-align/1ytfC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-629/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.717407 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ytfD id: 1ytfD alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ytfD/nostruct-align/1ytfD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ytfD/nostruct-align/1ytfD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1ytfD/nostruct-align/1ytfD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31696/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.344421 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1ytw id: 1ytw alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ytw/nostruct-align/1ytw.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ytw/nostruct-align/1ytw.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1ytw/nostruct-align/1ytw.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26194/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.233398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1yua id: 1yua alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yua/nostruct-align/1yua.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yua/nostruct-align/1yua.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yua/nostruct-align/1yua.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27231/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.523315 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1yua_1 id: 1yua_1 alignment found: /projects/compbio4/experiments/models.97/domains/1y/1yua_1/nostruct-align/1yua_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1y/1yua_1/nostruct-align/1yua_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1y/1yua_1/nostruct-align/1yua_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-548/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.868408 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1yua_2 id: 1yua_2 alignment found: /projects/compbio4/experiments/models.97/domains/1y/1yua_2/nostruct-align/1yua_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1y/1yua_2/nostruct-align/1yua_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1y/1yua_2/nostruct-align/1yua_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22366/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.671387 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1yuiA id: 1yuiA alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yuiA/nostruct-align/1yuiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yuiA/nostruct-align/1yuiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yuiA/nostruct-align/1yuiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31818/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.508423 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1yveI id: 1yveI alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yveI/nostruct-align/1yveI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yveI/nostruct-align/1yveI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yveI/nostruct-align/1yveI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6366/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.736389 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1yveJ id: 1yveJ alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yveJ/nostruct-align/1yveJ.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yveJ/nostruct-align/1yveJ.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yveJ/nostruct-align/1yveJ.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19543/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.053406 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1zaaC id: 1zaaC alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zaaC/nostruct-align/1zaaC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zaaC/nostruct-align/1zaaC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1zaaC/nostruct-align/1zaaC.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6832/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.045410 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1zac id: 1zac alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zac/nostruct-align/1zac.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zac/nostruct-align/1zac.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1zac/nostruct-align/1zac.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3725/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.773438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1zaq id: 1zaq alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zaq/nostruct-align/1zaq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zaq/nostruct-align/1zaq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1zaq/nostruct-align/1zaq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8780/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.796387 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1zbdB id: 1zbdB alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zbdB/nostruct-align/1zbdB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zbdB/nostruct-align/1zbdB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1zbdB/nostruct-align/1zbdB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26749/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.115417 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1zeiA id: 1zeiA alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zeiA/nostruct-align/1zeiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zeiA/nostruct-align/1zeiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1zeiA/nostruct-align/1zeiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19054/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.230347 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1zfd id: 1zfd alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zfd/nostruct-align/1zfd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zfd/nostruct-align/1zfd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1zfd/nostruct-align/1zfd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2320/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.647339 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1zfpE id: 1zfpE alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zfpE/nostruct-align/1zfpE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zfpE/nostruct-align/1zfpE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1zfpE/nostruct-align/1zfpE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13302/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.150391 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1zid id: 1zid alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zid/nostruct-align/1zid.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zid/nostruct-align/1zid.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1zid/nostruct-align/1zid.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3954/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -22.414368 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1zin id: 1zin alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zin/nostruct-align/1zin.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zin/nostruct-align/1zin.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1zin/nostruct-align/1zin.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31675/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.776367 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1zmeC id: 1zmeC alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zmeC/nostruct-align/1zmeC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zmeC/nostruct-align/1zmeC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1zmeC/nostruct-align/1zmeC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28753/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.911377 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1znf id: 1znf alignment found: /projects/compbio/experiments/models.97/pdb/1z/1znf/nostruct-align/1znf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1znf/nostruct-align/1znf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1znf/nostruct-align/1znf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30498/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.251465 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1zpdA id: 1zpdA alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zpdA/nostruct-align/1zpdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zpdA/nostruct-align/1zpdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1zpdA/nostruct-align/1zpdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6339/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.620422 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1zrn id: 1zrn alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zrn/nostruct-align/1zrn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zrn/nostruct-align/1zrn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1zrn/nostruct-align/1zrn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15751/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.195374 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1zto id: 1zto alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zto/nostruct-align/1zto.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zto/nostruct-align/1zto.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1zto/nostruct-align/1zto.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28882/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.857361 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1zug id: 1zug alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zug/nostruct-align/1zug.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zug/nostruct-align/1zug.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1zug/nostruct-align/1zug.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3825/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.163452 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1zwa id: 1zwa alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zwa/nostruct-align/1zwa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zwa/nostruct-align/1zwa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1zwa/nostruct-align/1zwa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11981/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.349487 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1zxq id: 1zxq alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zxq/nostruct-align/1zxq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zxq/nostruct-align/1zxq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1zxq/nostruct-align/1zxq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14413/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.255371 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1zymA id: 1zymA alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zymA/nostruct-align/1zymA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zymA/nostruct-align/1zymA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1zymA/nostruct-align/1zymA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15551/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.750366 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 256bA id: 256bA alignment found: /projects/compbio/experiments/models.97/pdb/25/256bA/nostruct-align/256bA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/25/256bA/nostruct-align/256bA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/25/256bA/nostruct-align/256bA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3614/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.609497 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2a0b id: 2a0b alignment found: /projects/compbio/experiments/models.97/pdb/2a/2a0b/nostruct-align/2a0b.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2a0b/nostruct-align/2a0b.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2a0b/nostruct-align/2a0b.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30078/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.821411 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2a3dA id: 2a3dA alignment found: /projects/compbio/experiments/models.97/pdb/2a/2a3dA/nostruct-align/2a3dA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2a3dA/nostruct-align/2a3dA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2a3dA/nostruct-align/2a3dA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16968/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.428345 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2aaa id: 2aaa alignment found: /projects/compbio/experiments/models.97/pdb/2a/2aaa/nostruct-align/2aaa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2aaa/nostruct-align/2aaa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2aaa/nostruct-align/2aaa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16081/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.044434 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2aaa_1 id: 2aaa_1 alignment found: /projects/compbio4/experiments/models.97/domains/2a/2aaa_1/nostruct-align/2aaa_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2a/2aaa_1/nostruct-align/2aaa_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2a/2aaa_1/nostruct-align/2aaa_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13259/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.987427 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2aaa_2 id: 2aaa_2 alignment found: /projects/compbio4/experiments/models.97/domains/2a/2aaa_2/nostruct-align/2aaa_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2a/2aaa_2/nostruct-align/2aaa_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2a/2aaa_2/nostruct-align/2aaa_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15458/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.574463 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2abd id: 2abd alignment found: /projects/compbio/experiments/models.97/pdb/2a/2abd/nostruct-align/2abd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2abd/nostruct-align/2abd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2abd/nostruct-align/2abd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17666/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.203369 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2abk id: 2abk alignment found: /projects/compbio/experiments/models.97/pdb/2a/2abk/nostruct-align/2abk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2abk/nostruct-align/2abk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2abk/nostruct-align/2abk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17377/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.943420 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ach_1a1 id: 2ach_1a1 alignment found: /projects/compbio4/experiments/models.97/domains/2a/2ach_1a1/nostruct-align/2ach_1a1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2a/2ach_1a1/nostruct-align/2ach_1a1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2a/2ach_1a1/nostruct-align/2ach_1a1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22576/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.834473 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2acr id: 2acr alignment found: /projects/compbio/experiments/models.97/pdb/2a/2acr/nostruct-align/2acr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2acr/nostruct-align/2acr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2acr/nostruct-align/2acr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19754/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.591431 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2act id: 2act alignment found: /projects/compbio/experiments/models.97/pdb/2a/2act/nostruct-align/2act.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2act/nostruct-align/2act.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2act/nostruct-align/2act.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17274/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.415405 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2acy id: 2acy alignment found: /projects/compbio/experiments/models.97/pdb/2a/2acy/nostruct-align/2acy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2acy/nostruct-align/2acy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2acy/nostruct-align/2acy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16215/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.322327 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2admA id: 2admA alignment found: /projects/compbio/experiments/models.97/pdb/2a/2admA/nostruct-align/2admA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2admA/nostruct-align/2admA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2admA/nostruct-align/2admA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-31410/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.886353 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2adr id: 2adr alignment found: /projects/compbio/experiments/models.97/pdb/2a/2adr/nostruct-align/2adr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2adr/nostruct-align/2adr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2adr/nostruct-align/2adr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9730/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.242310 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2adx id: 2adx alignment found: /projects/compbio/experiments/models.97/pdb/2a/2adx/nostruct-align/2adx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2adx/nostruct-align/2adx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2adx/nostruct-align/2adx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17494/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.993469 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ae2A id: 2ae2A alignment found: /projects/compbio/experiments/models.97/pdb/2a/2ae2A/nostruct-align/2ae2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2ae2A/nostruct-align/2ae2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2ae2A/nostruct-align/2ae2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19797/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -22.589478 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2af8 id: 2af8 alignment found: /projects/compbio/experiments/models.97/pdb/2a/2af8/nostruct-align/2af8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2af8/nostruct-align/2af8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2af8/nostruct-align/2af8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18285/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.902344 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2afp id: 2afp alignment found: /projects/compbio/experiments/models.97/pdb/2a/2afp/nostruct-align/2afp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2afp/nostruct-align/2afp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2afp/nostruct-align/2afp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15487/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.492432 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2afpA id: 2afpA alignment found: /projects/compbio/experiments/models.97/pdb/2a/2afpA/nostruct-align/2afpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2afpA/nostruct-align/2afpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2afpA/nostruct-align/2afpA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6651/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.278442 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ahjA id: 2ahjA alignment found: /projects/compbio/experiments/models.97/pdb/2a/2ahjA/nostruct-align/2ahjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2ahjA/nostruct-align/2ahjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2ahjA/nostruct-align/2ahjA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32633/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.523438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ahjB id: 2ahjB alignment found: /projects/compbio/experiments/models.97/pdb/2a/2ahjB/nostruct-align/2ahjB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2ahjB/nostruct-align/2ahjB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2ahjB/nostruct-align/2ahjB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27999/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.717346 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ahjC id: 2ahjC alignment found: /projects/compbio/experiments/models.97/pdb/2a/2ahjC/nostruct-align/2ahjC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2ahjC/nostruct-align/2ahjC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2ahjC/nostruct-align/2ahjC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4345/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.548340 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ak3A id: 2ak3A alignment found: /projects/compbio/experiments/models.97/pdb/2a/2ak3A/nostruct-align/2ak3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2ak3A/nostruct-align/2ak3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2ak3A/nostruct-align/2ak3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20195/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.424438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2alcA id: 2alcA alignment found: /projects/compbio/experiments/models.97/pdb/2a/2alcA/nostruct-align/2alcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2alcA/nostruct-align/2alcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2alcA/nostruct-align/2alcA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17072/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.229370 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2alp id: 2alp alignment found: /projects/compbio/experiments/models.97/pdb/2a/2alp/nostruct-align/2alp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2alp/nostruct-align/2alp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2alp/nostruct-align/2alp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19629/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.262451 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2anhA id: 2anhA alignment found: /projects/compbio/experiments/models.97/pdb/2a/2anhA/nostruct-align/2anhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2anhA/nostruct-align/2anhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2anhA/nostruct-align/2anhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32191/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.892456 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2aop id: 2aop alignment found: /projects/compbio/experiments/models.97/pdb/2a/2aop/nostruct-align/2aop.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2aop/nostruct-align/2aop.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2aop/nostruct-align/2aop.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6395/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.175354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2apr id: 2apr alignment found: /projects/compbio/experiments/models.97/pdb/2a/2apr/nostruct-align/2apr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2apr/nostruct-align/2apr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2apr/nostruct-align/2apr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16896/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.416382 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2arcA id: 2arcA alignment found: /projects/compbio/experiments/models.97/pdb/2a/2arcA/nostruct-align/2arcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2arcA/nostruct-align/2arcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2arcA/nostruct-align/2arcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7879/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.922363 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2arcB id: 2arcB alignment found: /projects/compbio/experiments/models.97/pdb/2a/2arcB/nostruct-align/2arcB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2arcB/nostruct-align/2arcB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2arcB/nostruct-align/2arcB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8157/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.871460 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2at2A id: 2at2A alignment found: /projects/compbio/experiments/models.97/pdb/2a/2at2A/nostruct-align/2at2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2at2A/nostruct-align/2at2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2at2A/nostruct-align/2at2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13513/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.487488 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2atjA id: 2atjA alignment found: /projects/compbio/experiments/models.97/pdb/2a/2atjA/nostruct-align/2atjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2atjA/nostruct-align/2atjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2atjA/nostruct-align/2atjA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20037/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.236328 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2aviA id: 2aviA alignment found: /projects/compbio/experiments/models.97/pdb/2a/2aviA/nostruct-align/2aviA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2aviA/nostruct-align/2aviA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2aviA/nostruct-align/2aviA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28716/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.714478 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ayh id: 2ayh alignment found: /projects/compbio/experiments/models.97/pdb/2a/2ayh/nostruct-align/2ayh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2ayh/nostruct-align/2ayh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2ayh/nostruct-align/2ayh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21404/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.928345 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2azaA id: 2azaA alignment found: /projects/compbio/experiments/models.97/pdb/2a/2azaA/nostruct-align/2azaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2azaA/nostruct-align/2azaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2azaA/nostruct-align/2azaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3577/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.860413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2baa id: 2baa alignment found: /projects/compbio/experiments/models.97/pdb/2b/2baa/nostruct-align/2baa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2baa/nostruct-align/2baa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2baa/nostruct-align/2baa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27406/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.337402 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2bb2 id: 2bb2 alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bb2/nostruct-align/2bb2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bb2/nostruct-align/2bb2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bb2/nostruct-align/2bb2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28195/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.125366 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2bb2_1 id: 2bb2_1 alignment found: /projects/compbio4/experiments/models.97/domains/2b/2bb2_1/nostruct-align/2bb2_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2b/2bb2_1/nostruct-align/2bb2_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2b/2bb2_1/nostruct-align/2bb2_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5038/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.524414 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2bb2_2 id: 2bb2_2 alignment found: /projects/compbio4/experiments/models.97/domains/2b/2bb2_2/nostruct-align/2bb2_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2b/2bb2_2/nostruct-align/2bb2_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2b/2bb2_2/nostruct-align/2bb2_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24665/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.160400 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2bb8 id: 2bb8 alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bb8/nostruct-align/2bb8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bb8/nostruct-align/2bb8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bb8/nostruct-align/2bb8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4273/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.827393 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2bbkH id: 2bbkH alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bbkH/nostruct-align/2bbkH.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bbkH/nostruct-align/2bbkH.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bbkH/nostruct-align/2bbkH.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6719/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.062317 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2bbkL id: 2bbkL alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bbkL/nostruct-align/2bbkL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bbkL/nostruct-align/2bbkL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bbkL/nostruct-align/2bbkL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14904/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.832458 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2bbvA id: 2bbvA alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bbvA/nostruct-align/2bbvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bbvA/nostruct-align/2bbvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bbvA/nostruct-align/2bbvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27956/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.285400 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2bbvC id: 2bbvC alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bbvC/nostruct-align/2bbvC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bbvC/nostruct-align/2bbvC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bbvC/nostruct-align/2bbvC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12390/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.425354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2bby id: 2bby alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bby/nostruct-align/2bby.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bby/nostruct-align/2bby.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bby/nostruct-align/2bby.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8412/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.541382 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2bc2A id: 2bc2A alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bc2A/nostruct-align/2bc2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bc2A/nostruct-align/2bc2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bc2A/nostruct-align/2bc2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10927/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.586304 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2bc2B id: 2bc2B alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bc2B/nostruct-align/2bc2B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bc2B/nostruct-align/2bc2B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bc2B/nostruct-align/2bc2B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3497/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.895386 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2bce id: 2bce alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bce/nostruct-align/2bce.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bce/nostruct-align/2bce.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bce/nostruct-align/2bce.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8715/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.649414 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2bds id: 2bds alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bds/nostruct-align/2bds.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bds/nostruct-align/2bds.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bds/nostruct-align/2bds.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17384/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.122437 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2bgu id: 2bgu alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bgu/nostruct-align/2bgu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bgu/nostruct-align/2bgu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bgu/nostruct-align/2bgu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4365/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.186401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2bi6H id: 2bi6H alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bi6H/nostruct-align/2bi6H.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bi6H/nostruct-align/2bi6H.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bi6H/nostruct-align/2bi6H.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5953/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.081421 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2bidA id: 2bidA alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bidA/nostruct-align/2bidA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bidA/nostruct-align/2bidA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bidA/nostruct-align/2bidA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2749/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.341431 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2bjxA id: 2bjxA alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bjxA/nostruct-align/2bjxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bjxA/nostruct-align/2bjxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bjxA/nostruct-align/2bjxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18999/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.797363 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2bltA id: 2bltA alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bltA/nostruct-align/2bltA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bltA/nostruct-align/2bltA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bltA/nostruct-align/2bltA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27170/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.901367 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2bmhA id: 2bmhA alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bmhA/nostruct-align/2bmhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bmhA/nostruct-align/2bmhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bmhA/nostruct-align/2bmhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22470/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.053345 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2bn2A id: 2bn2A alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bn2A/nostruct-align/2bn2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bn2A/nostruct-align/2bn2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bn2A/nostruct-align/2bn2A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-31191/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.667480 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2bnh id: 2bnh alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bnh/nostruct-align/2bnh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bnh/nostruct-align/2bnh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bnh/nostruct-align/2bnh.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22945/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.408325 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2bopA id: 2bopA alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bopA/nostruct-align/2bopA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bopA/nostruct-align/2bopA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bopA/nostruct-align/2bopA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22079/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.276489 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2bosA id: 2bosA alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bosA/nostruct-align/2bosA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bosA/nostruct-align/2bosA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bosA/nostruct-align/2bosA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17435/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.789429 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2bpa1 id: 2bpa1 alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bpa1/nostruct-align/2bpa1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bpa1/nostruct-align/2bpa1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bpa1/nostruct-align/2bpa1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21937/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.321350 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2bpa2 id: 2bpa2 alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bpa2/nostruct-align/2bpa2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bpa2/nostruct-align/2bpa2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bpa2/nostruct-align/2bpa2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27070/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.109436 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2bpa3 id: 2bpa3 alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bpa3/nostruct-align/2bpa3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bpa3/nostruct-align/2bpa3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bpa3/nostruct-align/2bpa3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17286/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.835449 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2brz id: 2brz alignment found: /projects/compbio/experiments/models.97/pdb/2b/2brz/nostruct-align/2brz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2brz/nostruct-align/2brz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2brz/nostruct-align/2brz.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22125/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.455444 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2btcI id: 2btcI alignment found: /projects/compbio/experiments/models.97/pdb/2b/2btcI/nostruct-align/2btcI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2btcI/nostruct-align/2btcI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2btcI/nostruct-align/2btcI.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11105/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.571411 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2btfA id: 2btfA alignment found: /projects/compbio/experiments/models.97/pdb/2b/2btfA/nostruct-align/2btfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2btfA/nostruct-align/2btfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2btfA/nostruct-align/2btfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29181/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.833374 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2btfA_1 id: 2btfA_1 alignment found: /projects/compbio4/experiments/models.97/domains/2b/2btfA_1/nostruct-align/2btfA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2b/2btfA_1/nostruct-align/2btfA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2b/2btfA_1/nostruct-align/2btfA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24154/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.745361 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2btfA_2 id: 2btfA_2 alignment found: /projects/compbio4/experiments/models.97/domains/2b/2btfA_2/nostruct-align/2btfA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2b/2btfA_2/nostruct-align/2btfA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2b/2btfA_2/nostruct-align/2btfA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1796/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.487427 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2btvA id: 2btvA alignment found: /projects/compbio/experiments/models.97/pdb/2b/2btvA/nostruct-align/2btvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2btvA/nostruct-align/2btvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2btvA/nostruct-align/2btvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17710/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.050415 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2bvwA id: 2bvwA alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bvwA/nostruct-align/2bvwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bvwA/nostruct-align/2bvwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bvwA/nostruct-align/2bvwA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31917/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.116455 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2cae id: 2cae alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cae/nostruct-align/2cae.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cae/nostruct-align/2cae.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cae/nostruct-align/2cae.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15375/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.661377 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2cas id: 2cas alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cas/nostruct-align/2cas.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cas/nostruct-align/2cas.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cas/nostruct-align/2cas.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22743/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.067383 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2cau id: 2cau alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cau/nostruct-align/2cau.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cau/nostruct-align/2cau.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cau/nostruct-align/2cau.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1533/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.499451 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2cb5A id: 2cb5A alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cb5A/nostruct-align/2cb5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cb5A/nostruct-align/2cb5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cb5A/nostruct-align/2cb5A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12676/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.685425 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2cba id: 2cba alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cba/nostruct-align/2cba.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cba/nostruct-align/2cba.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cba/nostruct-align/2cba.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4252/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.000488 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2cbh id: 2cbh alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cbh/nostruct-align/2cbh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cbh/nostruct-align/2cbh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cbh/nostruct-align/2cbh.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26513/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.867371 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2cblA id: 2cblA alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cblA/nostruct-align/2cblA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cblA/nostruct-align/2cblA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cblA/nostruct-align/2cblA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2008/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.858398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2cbp id: 2cbp alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cbp/nostruct-align/2cbp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cbp/nostruct-align/2cbp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cbp/nostruct-align/2cbp.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13215/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.556396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ccyA id: 2ccyA alignment found: /projects/compbio/experiments/models.97/pdb/2c/2ccyA/nostruct-align/2ccyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2ccyA/nostruct-align/2ccyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2ccyA/nostruct-align/2ccyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16225/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.395386 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2cdx id: 2cdx alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cdx/nostruct-align/2cdx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cdx/nostruct-align/2cdx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cdx/nostruct-align/2cdx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28693/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.690430 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2cgpA id: 2cgpA alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cgpA/nostruct-align/2cgpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cgpA/nostruct-align/2cgpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cgpA/nostruct-align/2cgpA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24060/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.135376 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2chr_1 id: 2chr_1 alignment found: /projects/compbio4/experiments/models.97/domains/2c/2chr_1/nostruct-align/2chr_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2c/2chr_1/nostruct-align/2chr_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2c/2chr_1/nostruct-align/2chr_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28136/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.065369 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2chr_2 id: 2chr_2 alignment found: /projects/compbio4/experiments/models.97/domains/2c/2chr_2/nostruct-align/2chr_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2c/2chr_2/nostruct-align/2chr_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2c/2chr_2/nostruct-align/2chr_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24022/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.803345 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2chsA id: 2chsA alignment found: /projects/compbio/experiments/models.97/pdb/2c/2chsA/nostruct-align/2chsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2chsA/nostruct-align/2chsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2chsA/nostruct-align/2chsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30559/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.765320 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2cmd id: 2cmd alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cmd/nostruct-align/2cmd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cmd/nostruct-align/2cmd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cmd/nostruct-align/2cmd.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27004/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.123413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2cmd_1 id: 2cmd_1 alignment found: /projects/compbio4/experiments/models.97/domains/2c/2cmd_1/nostruct-align/2cmd_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2c/2cmd_1/nostruct-align/2cmd_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2c/2cmd_1/nostruct-align/2cmd_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32363/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.490356 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2cmd_2 id: 2cmd_2 alignment found: /projects/compbio4/experiments/models.97/domains/2c/2cmd_2/nostruct-align/2cmd_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2c/2cmd_2/nostruct-align/2cmd_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2c/2cmd_2/nostruct-align/2cmd_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4475/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.740417 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2cnd_1 id: 2cnd_1 alignment found: /projects/compbio4/experiments/models.97/domains/2c/2cnd_1/nostruct-align/2cnd_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2c/2cnd_1/nostruct-align/2cnd_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2c/2cnd_1/nostruct-align/2cnd_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17745/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.892456 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2cnd_2 id: 2cnd_2 alignment found: /projects/compbio4/experiments/models.97/domains/2c/2cnd_2/nostruct-align/2cnd_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2c/2cnd_2/nostruct-align/2cnd_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2c/2cnd_2/nostruct-align/2cnd_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19169/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.585327 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2cpb id: 2cpb alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cpb/nostruct-align/2cpb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cpb/nostruct-align/2cpb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cpb/nostruct-align/2cpb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28476/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.181396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2cpgA id: 2cpgA alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cpgA/nostruct-align/2cpgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cpgA/nostruct-align/2cpgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cpgA/nostruct-align/2cpgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28209/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.974426 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2cpl id: 2cpl alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cpl/nostruct-align/2cpl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cpl/nostruct-align/2cpl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cpl/nostruct-align/2cpl.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6080/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.900452 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2cps id: 2cps alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cps/nostruct-align/2cps.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cps/nostruct-align/2cps.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cps/nostruct-align/2cps.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4013/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.181396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2crd id: 2crd alignment found: /projects/compbio/experiments/models.97/pdb/2c/2crd/nostruct-align/2crd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2crd/nostruct-align/2crd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2crd/nostruct-align/2crd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8422/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.456421 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ctb id: 2ctb alignment found: /projects/compbio/experiments/models.97/pdb/2c/2ctb/nostruct-align/2ctb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2ctb/nostruct-align/2ctb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2ctb/nostruct-align/2ctb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21255/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.797485 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ctc id: 2ctc alignment found: /projects/compbio/experiments/models.97/pdb/2c/2ctc/nostruct-align/2ctc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2ctc/nostruct-align/2ctc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2ctc/nostruct-align/2ctc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12521/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.797485 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2cthA id: 2cthA alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cthA/nostruct-align/2cthA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cthA/nostruct-align/2cthA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cthA/nostruct-align/2cthA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20372/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.199341 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2cuaA id: 2cuaA alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cuaA/nostruct-align/2cuaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cuaA/nostruct-align/2cuaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cuaA/nostruct-align/2cuaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25018/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.885376 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2cxbA id: 2cxbA alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cxbA/nostruct-align/2cxbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cxbA/nostruct-align/2cxbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cxbA/nostruct-align/2cxbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18769/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.571411 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2cy3 id: 2cy3 alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cy3/nostruct-align/2cy3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cy3/nostruct-align/2cy3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cy3/nostruct-align/2cy3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5803/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.961426 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2cyp id: 2cyp alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cyp/nostruct-align/2cyp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cyp/nostruct-align/2cyp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cyp/nostruct-align/2cyp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21228/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.805420 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2dgcA id: 2dgcA alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dgcA/nostruct-align/2dgcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dgcA/nostruct-align/2dgcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2d/2dgcA/nostruct-align/2dgcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30252/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -24.989380 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2dhqA id: 2dhqA alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dhqA/nostruct-align/2dhqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dhqA/nostruct-align/2dhqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2d/2dhqA/nostruct-align/2dhqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10416/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.842468 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2dkb id: 2dkb alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dkb/nostruct-align/2dkb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dkb/nostruct-align/2dkb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2d/2dkb/nostruct-align/2dkb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1834/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.966431 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2dldA_1 id: 2dldA_1 alignment found: /projects/compbio4/experiments/models.97/domains/2d/2dldA_1/nostruct-align/2dldA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2d/2dldA_1/nostruct-align/2dldA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2d/2dldA_1/nostruct-align/2dldA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10921/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.826416 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2dldA_2 id: 2dldA_2 alignment found: /projects/compbio4/experiments/models.97/domains/2d/2dldA_2/nostruct-align/2dldA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2d/2dldA_2/nostruct-align/2dldA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2d/2dldA_2/nostruct-align/2dldA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10623/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -27.718384 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2dln id: 2dln alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dln/nostruct-align/2dln.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dln/nostruct-align/2dln.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2d/2dln/nostruct-align/2dln.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5749/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.331360 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2dln_1 id: 2dln_1 alignment found: /projects/compbio4/experiments/models.97/domains/2d/2dln_1/nostruct-align/2dln_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2d/2dln_1/nostruct-align/2dln_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2d/2dln_1/nostruct-align/2dln_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6756/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.101379 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2dln_2 id: 2dln_2 alignment found: /projects/compbio4/experiments/models.97/domains/2d/2dln_2/nostruct-align/2dln_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2d/2dln_2/nostruct-align/2dln_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2d/2dln_2/nostruct-align/2dln_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21329/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.679382 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2dnjA id: 2dnjA alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dnjA/nostruct-align/2dnjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dnjA/nostruct-align/2dnjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2d/2dnjA/nostruct-align/2dnjA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10574/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.684326 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2dorA id: 2dorA alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dorA/nostruct-align/2dorA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dorA/nostruct-align/2dorA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2d/2dorA/nostruct-align/2dorA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-948/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.958435 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2dpg id: 2dpg alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dpg/nostruct-align/2dpg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dpg/nostruct-align/2dpg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2d/2dpg/nostruct-align/2dpg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20914/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.400391 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2dpmA id: 2dpmA alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dpmA/nostruct-align/2dpmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dpmA/nostruct-align/2dpmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2d/2dpmA/nostruct-align/2dpmA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28610/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.557373 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2dri id: 2dri alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dri/nostruct-align/2dri.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dri/nostruct-align/2dri.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2d/2dri/nostruct-align/2dri.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24100/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.572388 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2drpA id: 2drpA alignment found: /projects/compbio/experiments/models.97/pdb/2d/2drpA/nostruct-align/2drpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2drpA/nostruct-align/2drpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2d/2drpA/nostruct-align/2drpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28066/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.561401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2drpA_1 id: 2drpA_1 alignment found: /projects/compbio4/experiments/models.97/domains/2d/2drpA_1/nostruct-align/2drpA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2d/2drpA_1/nostruct-align/2drpA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2d/2drpA_1/nostruct-align/2drpA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29298/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.634338 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2drpA_2 id: 2drpA_2 alignment found: /projects/compbio4/experiments/models.97/domains/2d/2drpA_2/nostruct-align/2drpA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2d/2drpA_2/nostruct-align/2drpA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2d/2drpA_2/nostruct-align/2drpA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23399/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.291382 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2dtr id: 2dtr alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dtr/nostruct-align/2dtr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dtr/nostruct-align/2dtr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2d/2dtr/nostruct-align/2dtr.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1793/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.730408 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2dubE id: 2dubE alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dubE/nostruct-align/2dubE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dubE/nostruct-align/2dubE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2d/2dubE/nostruct-align/2dubE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9311/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.902405 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2dynA id: 2dynA alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dynA/nostruct-align/2dynA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dynA/nostruct-align/2dynA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2d/2dynA/nostruct-align/2dynA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1912/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.222412 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ebn id: 2ebn alignment found: /projects/compbio/experiments/models.97/pdb/2e/2ebn/nostruct-align/2ebn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2ebn/nostruct-align/2ebn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2e/2ebn/nostruct-align/2ebn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7698/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.373413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2eboA id: 2eboA alignment found: /projects/compbio/experiments/models.97/pdb/2e/2eboA/nostruct-align/2eboA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2eboA/nostruct-align/2eboA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2e/2eboA/nostruct-align/2eboA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7475/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.903442 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ech id: 2ech alignment found: /projects/compbio/experiments/models.97/pdb/2e/2ech/nostruct-align/2ech.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2ech/nostruct-align/2ech.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2e/2ech/nostruct-align/2ech.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17968/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.975403 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2eiaB id: 2eiaB alignment found: /projects/compbio/experiments/models.97/pdb/2e/2eiaB/nostruct-align/2eiaB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2eiaB/nostruct-align/2eiaB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2e/2eiaB/nostruct-align/2eiaB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6603/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.310303 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2emo id: 2emo alignment found: /projects/compbio/experiments/models.97/pdb/2e/2emo/nostruct-align/2emo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2emo/nostruct-align/2emo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2e/2emo/nostruct-align/2emo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32061/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.030457 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2end id: 2end alignment found: /projects/compbio/experiments/models.97/pdb/2e/2end/nostruct-align/2end.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2end/nostruct-align/2end.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2e/2end/nostruct-align/2end.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13765/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.805420 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2eng id: 2eng alignment found: /projects/compbio/experiments/models.97/pdb/2e/2eng/nostruct-align/2eng.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2eng/nostruct-align/2eng.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2e/2eng/nostruct-align/2eng.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12858/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.562378 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2er7E id: 2er7E alignment found: /projects/compbio/experiments/models.97/pdb/2e/2er7E/nostruct-align/2er7E.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2er7E/nostruct-align/2er7E.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2e/2er7E/nostruct-align/2er7E.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25071/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.358398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ercA id: 2ercA alignment found: /projects/compbio/experiments/models.97/pdb/2e/2ercA/nostruct-align/2ercA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2ercA/nostruct-align/2ercA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2e/2ercA/nostruct-align/2ercA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13901/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.997375 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2erl id: 2erl alignment found: /projects/compbio/experiments/models.97/pdb/2e/2erl/nostruct-align/2erl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2erl/nostruct-align/2erl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2e/2erl/nostruct-align/2erl.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30522/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.899475 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ezh id: 2ezh alignment found: /projects/compbio/experiments/models.97/pdb/2e/2ezh/nostruct-align/2ezh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2ezh/nostruct-align/2ezh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2e/2ezh/nostruct-align/2ezh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32200/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.340454 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ezi id: 2ezi alignment found: /projects/compbio/experiments/models.97/pdb/2e/2ezi/nostruct-align/2ezi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2ezi/nostruct-align/2ezi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2e/2ezi/nostruct-align/2ezi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21967/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.666504 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ezk id: 2ezk alignment found: /projects/compbio/experiments/models.97/pdb/2e/2ezk/nostruct-align/2ezk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2ezk/nostruct-align/2ezk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2e/2ezk/nostruct-align/2ezk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21855/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.877441 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ezl id: 2ezl alignment found: /projects/compbio/experiments/models.97/pdb/2e/2ezl/nostruct-align/2ezl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2ezl/nostruct-align/2ezl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2e/2ezl/nostruct-align/2ezl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11825/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.055359 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ezxA id: 2ezxA alignment found: /projects/compbio/experiments/models.97/pdb/2e/2ezxA/nostruct-align/2ezxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2ezxA/nostruct-align/2ezxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2e/2ezxA/nostruct-align/2ezxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6045/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.863403 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2fal id: 2fal alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fal/nostruct-align/2fal.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fal/nostruct-align/2fal.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fal/nostruct-align/2fal.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5285/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.567383 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2fcbA id: 2fcbA alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fcbA/nostruct-align/2fcbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fcbA/nostruct-align/2fcbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fcbA/nostruct-align/2fcbA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31941/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.492432 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2fcr id: 2fcr alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fcr/nostruct-align/2fcr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fcr/nostruct-align/2fcr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fcr/nostruct-align/2fcr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3700/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.589355 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2fdn id: 2fdn alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fdn/nostruct-align/2fdn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fdn/nostruct-align/2fdn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fdn/nostruct-align/2fdn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26565/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.667358 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2fgf id: 2fgf alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fgf/nostruct-align/2fgf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fgf/nostruct-align/2fgf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fgf/nostruct-align/2fgf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5067/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.469360 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2fha id: 2fha alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fha/nostruct-align/2fha.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fha/nostruct-align/2fha.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fha/nostruct-align/2fha.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1646/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.885376 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2fivA id: 2fivA alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fivA/nostruct-align/2fivA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fivA/nostruct-align/2fivA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fivA/nostruct-align/2fivA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2654/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.495361 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2fmr id: 2fmr alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fmr/nostruct-align/2fmr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fmr/nostruct-align/2fmr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fmr/nostruct-align/2fmr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11141/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.730347 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2fn2 id: 2fn2 alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fn2/nostruct-align/2fn2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fn2/nostruct-align/2fn2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fn2/nostruct-align/2fn2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14817/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.929443 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2fnb id: 2fnb alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fnb/nostruct-align/2fnb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fnb/nostruct-align/2fnb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fnb/nostruct-align/2fnb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14969/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.419434 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2fnbA id: 2fnbA alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fnbA/nostruct-align/2fnbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fnbA/nostruct-align/2fnbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fnbA/nostruct-align/2fnbA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9897/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.844360 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2fokA id: 2fokA alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fokA/nostruct-align/2fokA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fokA/nostruct-align/2fokA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fokA/nostruct-align/2fokA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21791/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.392395 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2fow id: 2fow alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fow/nostruct-align/2fow.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fow/nostruct-align/2fow.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fow/nostruct-align/2fow.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25698/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.311340 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2fox id: 2fox alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fox/nostruct-align/2fox.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fox/nostruct-align/2fox.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fox/nostruct-align/2fox.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16681/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.153442 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2frvA id: 2frvA alignment found: /projects/compbio/experiments/models.97/pdb/2f/2frvA/nostruct-align/2frvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2frvA/nostruct-align/2frvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2frvA/nostruct-align/2frvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7001/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.029419 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2frvB id: 2frvB alignment found: /projects/compbio/experiments/models.97/pdb/2f/2frvB/nostruct-align/2frvB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2frvB/nostruct-align/2frvB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2frvB/nostruct-align/2frvB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13355/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.043457 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2fsp id: 2fsp alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fsp/nostruct-align/2fsp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fsp/nostruct-align/2fsp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fsp/nostruct-align/2fsp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10471/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.112366 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2fua id: 2fua alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fua/nostruct-align/2fua.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fua/nostruct-align/2fua.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fua/nostruct-align/2fua.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5882/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.272400 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2fx2 id: 2fx2 alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fx2/nostruct-align/2fx2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fx2/nostruct-align/2fx2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fx2/nostruct-align/2fx2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31215/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.261353 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2fxb id: 2fxb alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fxb/nostruct-align/2fxb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fxb/nostruct-align/2fxb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fxb/nostruct-align/2fxb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15788/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.608398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2gar id: 2gar alignment found: /projects/compbio/experiments/models.97/pdb/2g/2gar/nostruct-align/2gar.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2g/2gar/nostruct-align/2gar.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2g/2gar/nostruct-align/2gar.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25556/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.094360 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2gcc id: 2gcc alignment found: /projects/compbio/experiments/models.97/pdb/2g/2gcc/nostruct-align/2gcc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2g/2gcc/nostruct-align/2gcc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2g/2gcc/nostruct-align/2gcc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31330/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.641357 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2gdm id: 2gdm alignment found: /projects/compbio/experiments/models.97/pdb/2g/2gdm/nostruct-align/2gdm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2g/2gdm/nostruct-align/2gdm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2g/2gdm/nostruct-align/2gdm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17312/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.809326 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2gf1 id: 2gf1 alignment found: /projects/compbio/experiments/models.97/pdb/2g/2gf1/nostruct-align/2gf1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2g/2gf1/nostruct-align/2gf1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2g/2gf1/nostruct-align/2gf1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20766/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.688354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2gliA id: 2gliA alignment found: /projects/compbio/experiments/models.97/pdb/2g/2gliA/nostruct-align/2gliA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2g/2gliA/nostruct-align/2gliA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2g/2gliA/nostruct-align/2gliA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11909/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.990356 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2glt_1 id: 2glt_1 alignment found: /projects/compbio4/experiments/models.97/domains/2g/2glt_1/nostruct-align/2glt_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2g/2glt_1/nostruct-align/2glt_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2g/2glt_1/nostruct-align/2glt_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20850/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.756409 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2glt_2 id: 2glt_2 alignment found: /projects/compbio4/experiments/models.97/domains/2g/2glt_2/nostruct-align/2glt_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2g/2glt_2/nostruct-align/2glt_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2g/2glt_2/nostruct-align/2glt_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21459/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.936401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2gmfA id: 2gmfA alignment found: /projects/compbio/experiments/models.97/pdb/2g/2gmfA/nostruct-align/2gmfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2g/2gmfA/nostruct-align/2gmfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2g/2gmfA/nostruct-align/2gmfA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14782/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.662354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2gp8A id: 2gp8A alignment found: /projects/compbio/experiments/models.97/pdb/2g/2gp8A/nostruct-align/2gp8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2g/2gp8A/nostruct-align/2gp8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2g/2gp8A/nostruct-align/2gp8A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file ./tmp/tmp-build-weighted-model-alpha-29393/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.697388 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2gpr id: 2gpr alignment found: /projects/compbio/experiments/models.97/pdb/2g/2gpr/nostruct-align/2gpr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2g/2gpr/nostruct-align/2gpr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2g/2gpr/nostruct-align/2gpr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1773/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.052429 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2gsaA id: 2gsaA alignment found: /projects/compbio/experiments/models.97/pdb/2g/2gsaA/nostruct-align/2gsaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2g/2gsaA/nostruct-align/2gsaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2g/2gsaA/nostruct-align/2gsaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13973/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.441467 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2gstA_1 id: 2gstA_1 alignment found: /projects/compbio4/experiments/models.97/domains/2g/2gstA_1/nostruct-align/2gstA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2g/2gstA_1/nostruct-align/2gstA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2g/2gstA_1/nostruct-align/2gstA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15812/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.662476 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2gstA_2 id: 2gstA_2 alignment found: /projects/compbio4/experiments/models.97/domains/2g/2gstA_2/nostruct-align/2gstA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2g/2gstA_2/nostruct-align/2gstA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2g/2gstA_2/nostruct-align/2gstA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31903/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.965332 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2hbg id: 2hbg alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hbg/nostruct-align/2hbg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hbg/nostruct-align/2hbg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hbg/nostruct-align/2hbg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3618/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.095337 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2hddA id: 2hddA alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hddA/nostruct-align/2hddA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hddA/nostruct-align/2hddA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hddA/nostruct-align/2hddA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18604/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.016357 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2hdhA id: 2hdhA alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hdhA/nostruct-align/2hdhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hdhA/nostruct-align/2hdhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hdhA/nostruct-align/2hdhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11817/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -29.369446 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2hfh id: 2hfh alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hfh/nostruct-align/2hfh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hfh/nostruct-align/2hfh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hfh/nostruct-align/2hfh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10155/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.851440 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2hft id: 2hft alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hft/nostruct-align/2hft.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hft/nostruct-align/2hft.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hft/nostruct-align/2hft.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4304/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.858398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2hft_1 id: 2hft_1 alignment found: /projects/compbio4/experiments/models.97/domains/2h/2hft_1/nostruct-align/2hft_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2h/2hft_1/nostruct-align/2hft_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2h/2hft_1/nostruct-align/2hft_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23683/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.870361 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2hft_2 id: 2hft_2 alignment found: /projects/compbio4/experiments/models.97/domains/2h/2hft_2/nostruct-align/2hft_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2h/2hft_2/nostruct-align/2hft_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2h/2hft_2/nostruct-align/2hft_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9200/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.794373 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2hgf id: 2hgf alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hgf/nostruct-align/2hgf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hgf/nostruct-align/2hgf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hgf/nostruct-align/2hgf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21410/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.481445 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2hgsA id: 2hgsA alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hgsA/nostruct-align/2hgsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hgsA/nostruct-align/2hgsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hgsA/nostruct-align/2hgsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27051/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.595398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2hhmA id: 2hhmA alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hhmA/nostruct-align/2hhmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hhmA/nostruct-align/2hhmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hhmA/nostruct-align/2hhmA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-11641/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.574402 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2hipA id: 2hipA alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hipA/nostruct-align/2hipA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hipA/nostruct-align/2hipA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hipA/nostruct-align/2hipA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4116/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.844360 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2hlcA id: 2hlcA alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hlcA/nostruct-align/2hlcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hlcA/nostruct-align/2hlcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hlcA/nostruct-align/2hlcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25062/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.427490 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2hmqA id: 2hmqA alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hmqA/nostruct-align/2hmqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hmqA/nostruct-align/2hmqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hmqA/nostruct-align/2hmqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4742/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.737427 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2hmx id: 2hmx alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hmx/nostruct-align/2hmx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hmx/nostruct-align/2hmx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hmx/nostruct-align/2hmx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29166/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.842407 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2hmzA id: 2hmzA alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hmzA/nostruct-align/2hmzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hmzA/nostruct-align/2hmzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hmzA/nostruct-align/2hmzA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8189/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.853394 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2hnp id: 2hnp alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hnp/nostruct-align/2hnp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hnp/nostruct-align/2hnp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hnp/nostruct-align/2hnp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25074/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.691406 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2hntE id: 2hntE alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hntE/nostruct-align/2hntE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hntE/nostruct-align/2hntE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hntE/nostruct-align/2hntE.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-13862/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.150391 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2hp8 id: 2hp8 alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hp8/nostruct-align/2hp8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hp8/nostruct-align/2hp8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hp8/nostruct-align/2hp8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27680/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.821472 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2hqi id: 2hqi alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hqi/nostruct-align/2hqi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hqi/nostruct-align/2hqi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hqi/nostruct-align/2hqi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26279/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.059387 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2hrvA id: 2hrvA alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hrvA/nostruct-align/2hrvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hrvA/nostruct-align/2hrvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hrvA/nostruct-align/2hrvA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13320/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.471375 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2hts id: 2hts alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hts/nostruct-align/2hts.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hts/nostruct-align/2hts.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hts/nostruct-align/2hts.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17790/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.707397 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2hvm id: 2hvm alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hvm/nostruct-align/2hvm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hvm/nostruct-align/2hvm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hvm/nostruct-align/2hvm.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10868/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.581421 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2i1b id: 2i1b alignment found: /projects/compbio/experiments/models.97/pdb/2i/2i1b/nostruct-align/2i1b.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2i/2i1b/nostruct-align/2i1b.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2i/2i1b/nostruct-align/2i1b.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-729/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.372437 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2if1 id: 2if1 alignment found: /projects/compbio/experiments/models.97/pdb/2i/2if1/nostruct-align/2if1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2i/2if1/nostruct-align/2if1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2i/2if1/nostruct-align/2if1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26736/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.779419 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ifo id: 2ifo alignment found: /projects/compbio/experiments/models.97/pdb/2i/2ifo/nostruct-align/2ifo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2i/2ifo/nostruct-align/2ifo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2i/2ifo/nostruct-align/2ifo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32090/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.344360 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2igd id: 2igd alignment found: /projects/compbio/experiments/models.97/pdb/2i/2igd/nostruct-align/2igd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2i/2igd/nostruct-align/2igd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2i/2igd/nostruct-align/2igd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5286/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.672485 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ihl id: 2ihl alignment found: /projects/compbio/experiments/models.97/pdb/2i/2ihl/nostruct-align/2ihl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2i/2ihl/nostruct-align/2ihl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2i/2ihl/nostruct-align/2ihl.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13904/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.458496 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ila id: 2ila alignment found: /projects/compbio/experiments/models.97/pdb/2i/2ila/nostruct-align/2ila.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2i/2ila/nostruct-align/2ila.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2i/2ila/nostruct-align/2ila.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1007/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.205444 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ilk id: 2ilk alignment found: /projects/compbio/experiments/models.97/pdb/2i/2ilk/nostruct-align/2ilk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2i/2ilk/nostruct-align/2ilk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2i/2ilk/nostruct-align/2ilk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32619/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.841370 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2int id: 2int alignment found: /projects/compbio/experiments/models.97/pdb/2i/2int/nostruct-align/2int.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2i/2int/nostruct-align/2int.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2i/2int/nostruct-align/2int.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28982/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.973389 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2irfG id: 2irfG alignment found: /projects/compbio/experiments/models.97/pdb/2i/2irfG/nostruct-align/2irfG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2i/2irfG/nostruct-align/2irfG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2i/2irfG/nostruct-align/2irfG.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11863/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.636475 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2itg id: 2itg alignment found: /projects/compbio/experiments/models.97/pdb/2i/2itg/nostruct-align/2itg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2i/2itg/nostruct-align/2itg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2i/2itg/nostruct-align/2itg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20110/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.054443 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2izhB id: 2izhB alignment found: /projects/compbio/experiments/models.97/pdb/2i/2izhB/nostruct-align/2izhB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2i/2izhB/nostruct-align/2izhB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2i/2izhB/nostruct-align/2izhB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9213/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.221436 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2jhbA id: 2jhbA alignment found: /projects/compbio/experiments/models.97/pdb/2j/2jhbA/nostruct-align/2jhbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2j/2jhbA/nostruct-align/2jhbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2j/2jhbA/nostruct-align/2jhbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4129/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.750366 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2kaiA id: 2kaiA alignment found: /projects/compbio/experiments/models.97/pdb/2k/2kaiA/nostruct-align/2kaiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2k/2kaiA/nostruct-align/2kaiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2k/2kaiA/nostruct-align/2kaiA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-12362/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.208374 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2kauA id: 2kauA alignment found: /projects/compbio/experiments/models.97/pdb/2k/2kauA/nostruct-align/2kauA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2k/2kauA/nostruct-align/2kauA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2k/2kauA/nostruct-align/2kauA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21989/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.033447 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2kauB id: 2kauB alignment found: /projects/compbio/experiments/models.97/pdb/2k/2kauB/nostruct-align/2kauB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2k/2kauB/nostruct-align/2kauB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2k/2kauB/nostruct-align/2kauB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-876/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.098389 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2kauC_1 id: 2kauC_1 alignment found: /projects/compbio4/experiments/models.97/domains/2k/2kauC_1/nostruct-align/2kauC_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2k/2kauC_1/nostruct-align/2kauC_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2k/2kauC_1/nostruct-align/2kauC_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31391/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.042419 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2kauC_2 id: 2kauC_2 alignment found: /projects/compbio4/experiments/models.97/domains/2k/2kauC_2/nostruct-align/2kauC_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2k/2kauC_2/nostruct-align/2kauC_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2k/2kauC_2/nostruct-align/2kauC_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18163/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.416443 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2kinA id: 2kinA alignment found: /projects/compbio/experiments/models.97/pdb/2k/2kinA/nostruct-align/2kinA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2k/2kinA/nostruct-align/2kinA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2k/2kinA/nostruct-align/2kinA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29518/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.674438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2kinB id: 2kinB alignment found: /projects/compbio/experiments/models.97/pdb/2k/2kinB/nostruct-align/2kinB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2k/2kinB/nostruct-align/2kinB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2k/2kinB/nostruct-align/2kinB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13821/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.696411 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2knt id: 2knt alignment found: /projects/compbio/experiments/models.97/pdb/2k/2knt/nostruct-align/2knt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2k/2knt/nostruct-align/2knt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2k/2knt/nostruct-align/2knt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12832/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.874390 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2lbd id: 2lbd alignment found: /projects/compbio/experiments/models.97/pdb/2l/2lbd/nostruct-align/2lbd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2lbd/nostruct-align/2lbd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2l/2lbd/nostruct-align/2lbd.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12764/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.793335 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2lbp id: 2lbp alignment found: /projects/compbio/experiments/models.97/pdb/2l/2lbp/nostruct-align/2lbp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2lbp/nostruct-align/2lbp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2l/2lbp/nostruct-align/2lbp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4987/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.790344 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2lefA id: 2lefA alignment found: /projects/compbio/experiments/models.97/pdb/2l/2lefA/nostruct-align/2lefA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2lefA/nostruct-align/2lefA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2l/2lefA/nostruct-align/2lefA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19072/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.756470 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2leu id: 2leu alignment found: /projects/compbio/experiments/models.97/pdb/2l/2leu/nostruct-align/2leu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2leu/nostruct-align/2leu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2l/2leu/nostruct-align/2leu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22320/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.189331 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2lfb id: 2lfb alignment found: /projects/compbio/experiments/models.97/pdb/2l/2lfb/nostruct-align/2lfb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2lfb/nostruct-align/2lfb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2l/2lfb/nostruct-align/2lfb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12701/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.466431 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2lgsA id: 2lgsA alignment found: /projects/compbio/experiments/models.97/pdb/2l/2lgsA/nostruct-align/2lgsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2lgsA/nostruct-align/2lgsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2l/2lgsA/nostruct-align/2lgsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30657/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.319458 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2lh2 id: 2lh2 alignment found: /projects/compbio/experiments/models.97/pdb/2l/2lh2/nostruct-align/2lh2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2lh2/nostruct-align/2lh2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2l/2lh2/nostruct-align/2lh2.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19701/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.948486 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2lhb id: 2lhb alignment found: /projects/compbio/experiments/models.97/pdb/2l/2lhb/nostruct-align/2lhb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2lhb/nostruct-align/2lhb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2l/2lhb/nostruct-align/2lhb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10828/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.737427 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ligA id: 2ligA alignment found: /projects/compbio/experiments/models.97/pdb/2l/2ligA/nostruct-align/2ligA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2ligA/nostruct-align/2ligA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2l/2ligA/nostruct-align/2ligA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7892/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.372437 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2lisA id: 2lisA alignment found: /projects/compbio/experiments/models.97/pdb/2l/2lisA/nostruct-align/2lisA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2lisA/nostruct-align/2lisA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2l/2lisA/nostruct-align/2lisA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17284/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.288330 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2liv id: 2liv alignment found: /projects/compbio/experiments/models.97/pdb/2l/2liv/nostruct-align/2liv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2liv/nostruct-align/2liv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2l/2liv/nostruct-align/2liv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13187/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.321411 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ltnA id: 2ltnA alignment found: /projects/compbio/experiments/models.97/pdb/2l/2ltnA/nostruct-align/2ltnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2ltnA/nostruct-align/2ltnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2l/2ltnA/nostruct-align/2ltnA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3730/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.281372 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ltnB id: 2ltnB alignment found: /projects/compbio/experiments/models.97/pdb/2l/2ltnB/nostruct-align/2ltnB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2ltnB/nostruct-align/2ltnB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2l/2ltnB/nostruct-align/2ltnB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17405/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.507324 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2masA id: 2masA alignment found: /projects/compbio/experiments/models.97/pdb/2m/2masA/nostruct-align/2masA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2masA/nostruct-align/2masA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2masA/nostruct-align/2masA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22065/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.576416 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2matA id: 2matA alignment found: /projects/compbio/experiments/models.97/pdb/2m/2matA/nostruct-align/2matA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2matA/nostruct-align/2matA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2matA/nostruct-align/2matA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26410/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.356445 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2mbr id: 2mbr alignment found: /projects/compbio/experiments/models.97/pdb/2m/2mbr/nostruct-align/2mbr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2mbr/nostruct-align/2mbr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2mbr/nostruct-align/2mbr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5487/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.010376 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2mcm id: 2mcm alignment found: /projects/compbio/experiments/models.97/pdb/2m/2mcm/nostruct-align/2mcm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2mcm/nostruct-align/2mcm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2mcm/nostruct-align/2mcm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15185/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.275330 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2mev1 id: 2mev1 alignment found: /projects/compbio/experiments/models.97/pdb/2m/2mev1/nostruct-align/2mev1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2mev1/nostruct-align/2mev1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2mev1/nostruct-align/2mev1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14619/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.404297 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2mev2 id: 2mev2 alignment found: /projects/compbio/experiments/models.97/pdb/2m/2mev2/nostruct-align/2mev2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2mev2/nostruct-align/2mev2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2mev2/nostruct-align/2mev2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6233/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.546387 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2mev4 id: 2mev4 alignment found: /projects/compbio/experiments/models.97/pdb/2m/2mev4/nostruct-align/2mev4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2mev4/nostruct-align/2mev4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2mev4/nostruct-align/2mev4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22497/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.651367 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2mhr id: 2mhr alignment found: /projects/compbio/experiments/models.97/pdb/2m/2mhr/nostruct-align/2mhr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2mhr/nostruct-align/2mhr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2mhr/nostruct-align/2mhr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3434/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.116333 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2minA id: 2minA alignment found: /projects/compbio/experiments/models.97/pdb/2m/2minA/nostruct-align/2minA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2minA/nostruct-align/2minA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2minA/nostruct-align/2minA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18641/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.119446 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2mltA id: 2mltA alignment found: /projects/compbio/experiments/models.97/pdb/2m/2mltA/nostruct-align/2mltA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2mltA/nostruct-align/2mltA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2mltA/nostruct-align/2mltA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31823/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.342407 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2mnr id: 2mnr alignment found: /projects/compbio/experiments/models.97/pdb/2m/2mnr/nostruct-align/2mnr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2mnr/nostruct-align/2mnr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2mnr/nostruct-align/2mnr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12218/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.777405 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2mnr_1 id: 2mnr_1 alignment found: /projects/compbio4/experiments/models.97/domains/2m/2mnr_1/nostruct-align/2mnr_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2m/2mnr_1/nostruct-align/2mnr_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2m/2mnr_1/nostruct-align/2mnr_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25300/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.153442 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2mnr_2 id: 2mnr_2 alignment found: /projects/compbio4/experiments/models.97/domains/2m/2mnr_2/nostruct-align/2mnr_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2m/2mnr_2/nostruct-align/2mnr_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2m/2mnr_2/nostruct-align/2mnr_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3867/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.196350 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2mprA id: 2mprA alignment found: /projects/compbio/experiments/models.97/pdb/2m/2mprA/nostruct-align/2mprA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2mprA/nostruct-align/2mprA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2mprA/nostruct-align/2mprA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15021/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.683472 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2mrb id: 2mrb alignment found: /projects/compbio/experiments/models.97/pdb/2m/2mrb/nostruct-align/2mrb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2mrb/nostruct-align/2mrb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2mrb/nostruct-align/2mrb.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10170/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.033325 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ms2A id: 2ms2A alignment found: /projects/compbio/experiments/models.97/pdb/2m/2ms2A/nostruct-align/2ms2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2ms2A/nostruct-align/2ms2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2ms2A/nostruct-align/2ms2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1988/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.069397 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2msbA id: 2msbA alignment found: /projects/compbio/experiments/models.97/pdb/2m/2msbA/nostruct-align/2msbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2msbA/nostruct-align/2msbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2msbA/nostruct-align/2msbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16542/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.801392 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2msbB id: 2msbB alignment found: /projects/compbio/experiments/models.97/pdb/2m/2msbB/nostruct-align/2msbB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2msbB/nostruct-align/2msbB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2msbB/nostruct-align/2msbB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26152/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.459473 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2mtaC id: 2mtaC alignment found: /projects/compbio/experiments/models.97/pdb/2m/2mtaC/nostruct-align/2mtaC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2mtaC/nostruct-align/2mtaC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2mtaC/nostruct-align/2mtaC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14151/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.022339 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2myo id: 2myo alignment found: /projects/compbio/experiments/models.97/pdb/2m/2myo/nostruct-align/2myo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2myo/nostruct-align/2myo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2myo/nostruct-align/2myo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2272/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.009399 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2myr id: 2myr alignment found: /projects/compbio/experiments/models.97/pdb/2m/2myr/nostruct-align/2myr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2myr/nostruct-align/2myr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2myr/nostruct-align/2myr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19790/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.635376 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2mysB id: 2mysB alignment found: /projects/compbio/experiments/models.97/pdb/2m/2mysB/nostruct-align/2mysB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2mysB/nostruct-align/2mysB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2mysB/nostruct-align/2mysB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28915/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.865479 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2nacA id: 2nacA alignment found: /projects/compbio/experiments/models.97/pdb/2n/2nacA/nostruct-align/2nacA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2n/2nacA/nostruct-align/2nacA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2n/2nacA/nostruct-align/2nacA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9209/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -23.133423 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2nacA_1 id: 2nacA_1 alignment found: /projects/compbio4/experiments/models.97/domains/2n/2nacA_1/nostruct-align/2nacA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2n/2nacA_1/nostruct-align/2nacA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2n/2nacA_1/nostruct-align/2nacA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29876/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.058411 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2nacA_2 id: 2nacA_2 alignment found: /projects/compbio4/experiments/models.97/domains/2n/2nacA_2/nostruct-align/2nacA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2n/2nacA_2/nostruct-align/2nacA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2n/2nacA_2/nostruct-align/2nacA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24596/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -21.783325 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2nadA id: 2nadA alignment found: /projects/compbio/experiments/models.97/pdb/2n/2nadA/nostruct-align/2nadA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2n/2nadA/nostruct-align/2nadA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2n/2nadA/nostruct-align/2nadA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29075/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -21.990356 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2napA id: 2napA alignment found: /projects/compbio/experiments/models.97/pdb/2n/2napA/nostruct-align/2napA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2n/2napA/nostruct-align/2napA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2n/2napA/nostruct-align/2napA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13367/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.215393 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ncm id: 2ncm alignment found: /projects/compbio/experiments/models.97/pdb/2n/2ncm/nostruct-align/2ncm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2n/2ncm/nostruct-align/2ncm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2n/2ncm/nostruct-align/2ncm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20923/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.823364 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2nef id: 2nef alignment found: /projects/compbio/experiments/models.97/pdb/2n/2nef/nostruct-align/2nef.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2n/2nef/nostruct-align/2nef.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2n/2nef/nostruct-align/2nef.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27822/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.128418 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2new id: 2new alignment found: /projects/compbio/experiments/models.97/pdb/2n/2new/nostruct-align/2new.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2n/2new/nostruct-align/2new.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2n/2new/nostruct-align/2new.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11594/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.200317 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2nllB id: 2nllB alignment found: /projects/compbio/experiments/models.97/pdb/2n/2nllB/nostruct-align/2nllB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2n/2nllB/nostruct-align/2nllB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2n/2nllB/nostruct-align/2nllB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32644/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.227478 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2nlrA id: 2nlrA alignment found: /projects/compbio/experiments/models.97/pdb/2n/2nlrA/nostruct-align/2nlrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2n/2nlrA/nostruct-align/2nlrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2n/2nlrA/nostruct-align/2nlrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9953/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.129395 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2nmbA id: 2nmbA alignment found: /projects/compbio/experiments/models.97/pdb/2n/2nmbA/nostruct-align/2nmbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2n/2nmbA/nostruct-align/2nmbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2n/2nmbA/nostruct-align/2nmbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29558/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.229370 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2nsyA id: 2nsyA alignment found: /projects/compbio/experiments/models.97/pdb/2n/2nsyA/nostruct-align/2nsyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2n/2nsyA/nostruct-align/2nsyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2n/2nsyA/nostruct-align/2nsyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11405/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.498413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2occA id: 2occA alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occA/nostruct-align/2occA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occA/nostruct-align/2occA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2o/2occA/nostruct-align/2occA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17696/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.100342 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2occB id: 2occB alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occB/nostruct-align/2occB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occB/nostruct-align/2occB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2o/2occB/nostruct-align/2occB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30124/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.510376 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2occD id: 2occD alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occD/nostruct-align/2occD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occD/nostruct-align/2occD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2o/2occD/nostruct-align/2occD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23912/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.082397 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2occE id: 2occE alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occE/nostruct-align/2occE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occE/nostruct-align/2occE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2o/2occE/nostruct-align/2occE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5632/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.318359 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2occF id: 2occF alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occF/nostruct-align/2occF.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occF/nostruct-align/2occF.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2o/2occF/nostruct-align/2occF.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19796/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.787415 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2occG id: 2occG alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occG/nostruct-align/2occG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occG/nostruct-align/2occG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2o/2occG/nostruct-align/2occG.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2028/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.655396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2occH id: 2occH alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occH/nostruct-align/2occH.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occH/nostruct-align/2occH.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2o/2occH/nostruct-align/2occH.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14988/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.404419 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2occI id: 2occI alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occI/nostruct-align/2occI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occI/nostruct-align/2occI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2o/2occI/nostruct-align/2occI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12405/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.099365 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2occJ id: 2occJ alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occJ/nostruct-align/2occJ.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occJ/nostruct-align/2occJ.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2o/2occJ/nostruct-align/2occJ.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28600/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.627380 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2occK id: 2occK alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occK/nostruct-align/2occK.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occK/nostruct-align/2occK.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2o/2occK/nostruct-align/2occK.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14435/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.814392 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2occL id: 2occL alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occL/nostruct-align/2occL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occL/nostruct-align/2occL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2o/2occL/nostruct-align/2occL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-245/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.737305 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2occM id: 2occM alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occM/nostruct-align/2occM.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occM/nostruct-align/2occM.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2o/2occM/nostruct-align/2occM.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7444/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.023438 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ohxA id: 2ohxA alignment found: /projects/compbio/experiments/models.97/pdb/2o/2ohxA/nostruct-align/2ohxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2ohxA/nostruct-align/2ohxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2o/2ohxA/nostruct-align/2ohxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20147/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -241.561340 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ohxA_1 id: 2ohxA_1 alignment found: /projects/compbio4/experiments/models.97/domains/2o/2ohxA_1/nostruct-align/2ohxA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2o/2ohxA_1/nostruct-align/2ohxA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2o/2ohxA_1/nostruct-align/2ohxA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5935/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -162.300354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ohxA_2 id: 2ohxA_2 alignment found: /projects/compbio4/experiments/models.97/domains/2o/2ohxA_2/nostruct-align/2ohxA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2o/2ohxA_2/nostruct-align/2ohxA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2o/2ohxA_2/nostruct-align/2ohxA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4220/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -91.709412 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2olbA id: 2olbA alignment found: /projects/compbio/experiments/models.97/pdb/2o/2olbA/nostruct-align/2olbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2olbA/nostruct-align/2olbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2o/2olbA/nostruct-align/2olbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22203/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.275391 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2omf id: 2omf alignment found: /projects/compbio/experiments/models.97/pdb/2o/2omf/nostruct-align/2omf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2omf/nostruct-align/2omf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2o/2omf/nostruct-align/2omf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18019/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.734497 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ovo id: 2ovo alignment found: /projects/compbio/experiments/models.97/pdb/2o/2ovo/nostruct-align/2ovo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2ovo/nostruct-align/2ovo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2o/2ovo/nostruct-align/2ovo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17970/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.983459 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2pac id: 2pac alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pac/nostruct-align/2pac.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pac/nostruct-align/2pac.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pac/nostruct-align/2pac.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16145/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.136353 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2pcdA id: 2pcdA alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pcdA/nostruct-align/2pcdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pcdA/nostruct-align/2pcdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pcdA/nostruct-align/2pcdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19039/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.592407 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2pcdM id: 2pcdM alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pcdM/nostruct-align/2pcdM.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pcdM/nostruct-align/2pcdM.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pcdM/nostruct-align/2pcdM.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9678/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.716309 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2pdd id: 2pdd alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pdd/nostruct-align/2pdd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pdd/nostruct-align/2pdd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pdd/nostruct-align/2pdd.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-9413/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.844360 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2pde id: 2pde alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pde/nostruct-align/2pde.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pde/nostruct-align/2pde.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pde/nostruct-align/2pde.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26655/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.844360 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2pec id: 2pec alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pec/nostruct-align/2pec.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pec/nostruct-align/2pec.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pec/nostruct-align/2pec.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27565/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.185425 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2pf1 id: 2pf1 alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pf1/nostruct-align/2pf1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pf1/nostruct-align/2pf1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pf1/nostruct-align/2pf1.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26780/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.173340 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2pgd id: 2pgd alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pgd/nostruct-align/2pgd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pgd/nostruct-align/2pgd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pgd/nostruct-align/2pgd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-548/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.923340 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2pgd_1 id: 2pgd_1 alignment found: /projects/compbio4/experiments/models.97/domains/2p/2pgd_1/nostruct-align/2pgd_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2p/2pgd_1/nostruct-align/2pgd_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2p/2pgd_1/nostruct-align/2pgd_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22590/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.821411 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2pgd_2 id: 2pgd_2 alignment found: /projects/compbio4/experiments/models.97/domains/2p/2pgd_2/nostruct-align/2pgd_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2p/2pgd_2/nostruct-align/2pgd_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2p/2pgd_2/nostruct-align/2pgd_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30805/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.297424 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2pgi id: 2pgi alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pgi/nostruct-align/2pgi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pgi/nostruct-align/2pgi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pgi/nostruct-align/2pgi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27089/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.690369 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2phlA id: 2phlA alignment found: /projects/compbio/experiments/models.97/pdb/2p/2phlA/nostruct-align/2phlA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2phlA/nostruct-align/2phlA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2phlA/nostruct-align/2phlA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14528/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.437378 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2phy id: 2phy alignment found: /projects/compbio/experiments/models.97/pdb/2p/2phy/nostruct-align/2phy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2phy/nostruct-align/2phy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2phy/nostruct-align/2phy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19650/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.008362 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2pia id: 2pia alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pia/nostruct-align/2pia.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pia/nostruct-align/2pia.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pia/nostruct-align/2pia.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18200/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.864441 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2pia_1 id: 2pia_1 alignment found: /projects/compbio4/experiments/models.97/domains/2p/2pia_1/nostruct-align/2pia_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2p/2pia_1/nostruct-align/2pia_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2p/2pia_1/nostruct-align/2pia_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29531/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.243469 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2pia_2 id: 2pia_2 alignment found: /projects/compbio4/experiments/models.97/domains/2p/2pia_2/nostruct-align/2pia_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2p/2pia_2/nostruct-align/2pia_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2p/2pia_2/nostruct-align/2pia_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4047/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.474487 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2pia_3 id: 2pia_3 alignment found: /projects/compbio4/experiments/models.97/domains/2p/2pia_3/nostruct-align/2pia_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2p/2pia_3/nostruct-align/2pia_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2p/2pia_3/nostruct-align/2pia_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12980/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.791382 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2pii id: 2pii alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pii/nostruct-align/2pii.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pii/nostruct-align/2pii.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pii/nostruct-align/2pii.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8203/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.129333 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2pil id: 2pil alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pil/nostruct-align/2pil.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pil/nostruct-align/2pil.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pil/nostruct-align/2pil.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11545/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.092407 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2pkaA id: 2pkaA alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pkaA/nostruct-align/2pkaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pkaA/nostruct-align/2pkaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pkaA/nostruct-align/2pkaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19752/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.139282 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2plc id: 2plc alignment found: /projects/compbio/experiments/models.97/pdb/2p/2plc/nostruct-align/2plc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2plc/nostruct-align/2plc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2plc/nostruct-align/2plc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17632/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.557495 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2pldA id: 2pldA alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pldA/nostruct-align/2pldA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pldA/nostruct-align/2pldA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pldA/nostruct-align/2pldA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18929/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.525391 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2pleA id: 2pleA alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pleA/nostruct-align/2pleA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pleA/nostruct-align/2pleA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pleA/nostruct-align/2pleA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21569/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.397461 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2plt id: 2plt alignment found: /projects/compbio/experiments/models.97/pdb/2p/2plt/nostruct-align/2plt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2plt/nostruct-align/2plt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2plt/nostruct-align/2plt.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29879/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.709473 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2pna id: 2pna alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pna/nostruct-align/2pna.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pna/nostruct-align/2pna.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pna/nostruct-align/2pna.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23490/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.261353 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2polA id: 2polA alignment found: /projects/compbio/experiments/models.97/pdb/2p/2polA/nostruct-align/2polA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2polA/nostruct-align/2polA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2polA/nostruct-align/2polA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4418/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.122437 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2polA_1 id: 2polA_1 alignment found: /projects/compbio4/experiments/models.97/domains/2p/2polA_1/nostruct-align/2polA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2p/2polA_1/nostruct-align/2polA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2p/2polA_1/nostruct-align/2polA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28276/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.354370 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2polA_2 id: 2polA_2 alignment found: /projects/compbio4/experiments/models.97/domains/2p/2polA_2/nostruct-align/2polA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2p/2polA_2/nostruct-align/2polA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2p/2polA_2/nostruct-align/2polA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31601/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.758423 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2polA_3 id: 2polA_3 alignment found: /projects/compbio4/experiments/models.97/domains/2p/2polA_3/nostruct-align/2polA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2p/2polA_3/nostruct-align/2polA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2p/2polA_3/nostruct-align/2polA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21593/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.197388 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2por id: 2por alignment found: /projects/compbio/experiments/models.97/pdb/2p/2por/nostruct-align/2por.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2por/nostruct-align/2por.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2por/nostruct-align/2por.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29556/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.317383 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2prd id: 2prd alignment found: /projects/compbio/experiments/models.97/pdb/2p/2prd/nostruct-align/2prd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2prd/nostruct-align/2prd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2prd/nostruct-align/2prd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25872/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.125366 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2prgA id: 2prgA alignment found: /projects/compbio/experiments/models.97/pdb/2p/2prgA/nostruct-align/2prgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2prgA/nostruct-align/2prgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2prgA/nostruct-align/2prgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12001/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.867432 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2prgC id: 2prgC alignment found: /projects/compbio/experiments/models.97/pdb/2p/2prgC/nostruct-align/2prgC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2prgC/nostruct-align/2prgC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2prgC/nostruct-align/2prgC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19685/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.504395 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2prk id: 2prk alignment found: /projects/compbio/experiments/models.97/pdb/2p/2prk/nostruct-align/2prk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2prk/nostruct-align/2prk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2prk/nostruct-align/2prk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9784/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.144409 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2pspA id: 2pspA alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pspA/nostruct-align/2pspA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pspA/nostruct-align/2pspA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pspA/nostruct-align/2pspA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14233/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.482422 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2pta id: 2pta alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pta/nostruct-align/2pta.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pta/nostruct-align/2pta.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pta/nostruct-align/2pta.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11257/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.145386 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ptd id: 2ptd alignment found: /projects/compbio/experiments/models.97/pdb/2p/2ptd/nostruct-align/2ptd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2ptd/nostruct-align/2ptd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2ptd/nostruct-align/2ptd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6422/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.340332 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2pth id: 2pth alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pth/nostruct-align/2pth.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pth/nostruct-align/2pth.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pth/nostruct-align/2pth.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27739/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.686340 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ptl id: 2ptl alignment found: /projects/compbio/experiments/models.97/pdb/2p/2ptl/nostruct-align/2ptl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2ptl/nostruct-align/2ptl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2ptl/nostruct-align/2ptl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11335/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.505371 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2pvb id: 2pvb alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pvb/nostruct-align/2pvb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pvb/nostruct-align/2pvb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pvb/nostruct-align/2pvb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22317/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.642334 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2pvbA id: 2pvbA alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pvbA/nostruct-align/2pvbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pvbA/nostruct-align/2pvbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pvbA/nostruct-align/2pvbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7146/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.066406 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2pviA id: 2pviA alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pviA/nostruct-align/2pviA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pviA/nostruct-align/2pviA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pviA/nostruct-align/2pviA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13174/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.454468 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2qwc id: 2qwc alignment found: /projects/compbio/experiments/models.97/pdb/2q/2qwc/nostruct-align/2qwc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2q/2qwc/nostruct-align/2qwc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2q/2qwc/nostruct-align/2qwc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11845/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.313354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2reb id: 2reb alignment found: /projects/compbio/experiments/models.97/pdb/2r/2reb/nostruct-align/2reb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2r/2reb/nostruct-align/2reb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2r/2reb/nostruct-align/2reb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17017/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.588379 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2reb_1 id: 2reb_1 alignment found: /projects/compbio4/experiments/models.97/domains/2r/2reb_1/nostruct-align/2reb_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2r/2reb_1/nostruct-align/2reb_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2r/2reb_1/nostruct-align/2reb_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26273/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.741455 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2reb_2 id: 2reb_2 alignment found: /projects/compbio4/experiments/models.97/domains/2r/2reb_2/nostruct-align/2reb_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2r/2reb_2/nostruct-align/2reb_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2r/2reb_2/nostruct-align/2reb_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18927/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.620361 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2rgf id: 2rgf alignment found: /projects/compbio/experiments/models.97/pdb/2r/2rgf/nostruct-align/2rgf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2r/2rgf/nostruct-align/2rgf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2r/2rgf/nostruct-align/2rgf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9051/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.321411 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2rhe id: 2rhe alignment found: /projects/compbio/experiments/models.97/pdb/2r/2rhe/nostruct-align/2rhe.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2r/2rhe/nostruct-align/2rhe.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2r/2rhe/nostruct-align/2rhe.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22191/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.703369 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2rmpA id: 2rmpA alignment found: /projects/compbio/experiments/models.97/pdb/2r/2rmpA/nostruct-align/2rmpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2r/2rmpA/nostruct-align/2rmpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2r/2rmpA/nostruct-align/2rmpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7333/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.751465 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2rn2 id: 2rn2 alignment found: /projects/compbio/experiments/models.97/pdb/2r/2rn2/nostruct-align/2rn2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2r/2rn2/nostruct-align/2rn2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2r/2rn2/nostruct-align/2rn2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17523/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.946411 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2rslA id: 2rslA alignment found: /projects/compbio/experiments/models.97/pdb/2r/2rslA/nostruct-align/2rslA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2r/2rslA/nostruct-align/2rslA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2r/2rslA/nostruct-align/2rslA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13503/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.491333 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2rspA id: 2rspA alignment found: /projects/compbio/experiments/models.97/pdb/2r/2rspA/nostruct-align/2rspA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2r/2rspA/nostruct-align/2rspA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2r/2rspA/nostruct-align/2rspA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21048/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.481445 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2rspB id: 2rspB alignment found: /projects/compbio/experiments/models.97/pdb/2r/2rspB/nostruct-align/2rspB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2r/2rspB/nostruct-align/2rspB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2r/2rspB/nostruct-align/2rspB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5072/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.866333 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2rveA id: 2rveA alignment found: /projects/compbio/experiments/models.97/pdb/2r/2rveA/nostruct-align/2rveA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2r/2rveA/nostruct-align/2rveA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2r/2rveA/nostruct-align/2rveA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-631/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.953430 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2sak id: 2sak alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sak/nostruct-align/2sak.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sak/nostruct-align/2sak.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2sak/nostruct-align/2sak.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30877/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.469360 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2sas id: 2sas alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sas/nostruct-align/2sas.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sas/nostruct-align/2sas.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2sas/nostruct-align/2sas.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22261/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.638306 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2sblB_1 id: 2sblB_1 alignment found: /projects/compbio4/experiments/models.97/domains/2s/2sblB_1/nostruct-align/2sblB_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2s/2sblB_1/nostruct-align/2sblB_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2s/2sblB_1/nostruct-align/2sblB_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5380/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.187439 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2sblB_2 id: 2sblB_2 alignment found: /projects/compbio4/experiments/models.97/domains/2s/2sblB_2/nostruct-align/2sblB_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2s/2sblB_2/nostruct-align/2sblB_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2s/2sblB_2/nostruct-align/2sblB_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2191/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.756470 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2scpA id: 2scpA alignment found: /projects/compbio/experiments/models.97/pdb/2s/2scpA/nostruct-align/2scpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2scpA/nostruct-align/2scpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2scpA/nostruct-align/2scpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3874/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.496338 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2scuA id: 2scuA alignment found: /projects/compbio/experiments/models.97/pdb/2s/2scuA/nostruct-align/2scuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2scuA/nostruct-align/2scuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2scuA/nostruct-align/2scuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31306/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.631348 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2scuB id: 2scuB alignment found: /projects/compbio/experiments/models.97/pdb/2s/2scuB/nostruct-align/2scuB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2scuB/nostruct-align/2scuB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2scuB/nostruct-align/2scuB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29890/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.730408 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2sfa id: 2sfa alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sfa/nostruct-align/2sfa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sfa/nostruct-align/2sfa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2sfa/nostruct-align/2sfa.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8973/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.413452 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2sga id: 2sga alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sga/nostruct-align/2sga.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sga/nostruct-align/2sga.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2sga/nostruct-align/2sga.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23206/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.579346 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2shkA id: 2shkA alignment found: /projects/compbio/experiments/models.97/pdb/2s/2shkA/nostruct-align/2shkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2shkA/nostruct-align/2shkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2shkA/nostruct-align/2shkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17812/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.029297 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2shpA id: 2shpA alignment found: /projects/compbio/experiments/models.97/pdb/2s/2shpA/nostruct-align/2shpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2shpA/nostruct-align/2shpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2shpA/nostruct-align/2shpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1599/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.610352 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2sicI id: 2sicI alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sicI/nostruct-align/2sicI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sicI/nostruct-align/2sicI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2sicI/nostruct-align/2sicI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4497/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.193420 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2sil id: 2sil alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sil/nostruct-align/2sil.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sil/nostruct-align/2sil.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2sil/nostruct-align/2sil.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9094/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.661377 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2sivA id: 2sivA alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sivA/nostruct-align/2sivA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sivA/nostruct-align/2sivA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2sivA/nostruct-align/2sivA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6592/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.572388 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2sivB id: 2sivB alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sivB/nostruct-align/2sivB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sivB/nostruct-align/2sivB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2sivB/nostruct-align/2sivB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14677/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.501465 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2sli id: 2sli alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sli/nostruct-align/2sli.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sli/nostruct-align/2sli.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2sli/nostruct-align/2sli.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21543/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.320435 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2sn3 id: 2sn3 alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sn3/nostruct-align/2sn3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sn3/nostruct-align/2sn3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2sn3/nostruct-align/2sn3.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15309/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.605347 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2sns id: 2sns alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sns/nostruct-align/2sns.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sns/nostruct-align/2sns.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2sns/nostruct-align/2sns.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25747/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.630371 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2snv id: 2snv alignment found: /projects/compbio/experiments/models.97/pdb/2s/2snv/nostruct-align/2snv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2snv/nostruct-align/2snv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2snv/nostruct-align/2snv.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22497/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.460449 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2spcA id: 2spcA alignment found: /projects/compbio/experiments/models.97/pdb/2s/2spcA/nostruct-align/2spcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2spcA/nostruct-align/2spcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2spcA/nostruct-align/2spcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13320/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -20.074463 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2spo id: 2spo alignment found: /projects/compbio/experiments/models.97/pdb/2s/2spo/nostruct-align/2spo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2spo/nostruct-align/2spo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2spo/nostruct-align/2spo.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24770/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.683350 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2sqcA id: 2sqcA alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sqcA/nostruct-align/2sqcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sqcA/nostruct-align/2sqcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2sqcA/nostruct-align/2sqcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31486/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.077393 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2std id: 2std alignment found: /projects/compbio/experiments/models.97/pdb/2s/2std/nostruct-align/2std.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2std/nostruct-align/2std.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2std/nostruct-align/2std.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9223/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.952332 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2stv id: 2stv alignment found: /projects/compbio/experiments/models.97/pdb/2s/2stv/nostruct-align/2stv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2stv/nostruct-align/2stv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2stv/nostruct-align/2stv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30865/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.855347 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2sxl id: 2sxl alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sxl/nostruct-align/2sxl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sxl/nostruct-align/2sxl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2sxl/nostruct-align/2sxl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23225/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.376343 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2tbd id: 2tbd alignment found: /projects/compbio/experiments/models.97/pdb/2t/2tbd/nostruct-align/2tbd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2tbd/nostruct-align/2tbd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2t/2tbd/nostruct-align/2tbd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21333/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.756348 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2tbvA id: 2tbvA alignment found: /projects/compbio/experiments/models.97/pdb/2t/2tbvA/nostruct-align/2tbvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2tbvA/nostruct-align/2tbvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2t/2tbvA/nostruct-align/2tbvA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-594/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.917419 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2tct id: 2tct alignment found: /projects/compbio/experiments/models.97/pdb/2t/2tct/nostruct-align/2tct.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2tct/nostruct-align/2tct.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2t/2tct/nostruct-align/2tct.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8855/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.353516 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2tgf id: 2tgf alignment found: /projects/compbio/experiments/models.97/pdb/2t/2tgf/nostruct-align/2tgf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2tgf/nostruct-align/2tgf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2t/2tgf/nostruct-align/2tgf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32704/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.446472 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2tgi id: 2tgi alignment found: /projects/compbio/experiments/models.97/pdb/2t/2tgi/nostruct-align/2tgi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2tgi/nostruct-align/2tgi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2t/2tgi/nostruct-align/2tgi.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14410/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.927368 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2thiA id: 2thiA alignment found: /projects/compbio/experiments/models.97/pdb/2t/2thiA/nostruct-align/2thiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2thiA/nostruct-align/2thiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2t/2thiA/nostruct-align/2thiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22274/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.168335 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2tmdA id: 2tmdA alignment found: /projects/compbio/experiments/models.97/pdb/2t/2tmdA/nostruct-align/2tmdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2tmdA/nostruct-align/2tmdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2t/2tmdA/nostruct-align/2tmdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29306/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -33.691406 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2tmdA_1 id: 2tmdA_1 alignment found: /projects/compbio4/experiments/models.97/domains/2t/2tmdA_1/nostruct-align/2tmdA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2t/2tmdA_1/nostruct-align/2tmdA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2t/2tmdA_1/nostruct-align/2tmdA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29444/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.157410 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2tmdA_2 id: 2tmdA_2 alignment found: /projects/compbio4/experiments/models.97/domains/2t/2tmdA_2/nostruct-align/2tmdA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2t/2tmdA_2/nostruct-align/2tmdA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2t/2tmdA_2/nostruct-align/2tmdA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15196/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.541382 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2tmdA_3 id: 2tmdA_3 alignment found: /projects/compbio4/experiments/models.97/domains/2t/2tmdA_3/nostruct-align/2tmdA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2t/2tmdA_3/nostruct-align/2tmdA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2t/2tmdA_3/nostruct-align/2tmdA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7317/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -29.907349 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2tmkA id: 2tmkA alignment found: /projects/compbio/experiments/models.97/pdb/2t/2tmkA/nostruct-align/2tmkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2tmkA/nostruct-align/2tmkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2t/2tmkA/nostruct-align/2tmkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29282/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.125488 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2tmvP id: 2tmvP alignment found: /projects/compbio/experiments/models.97/pdb/2t/2tmvP/nostruct-align/2tmvP.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2tmvP/nostruct-align/2tmvP.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2t/2tmvP/nostruct-align/2tmvP.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12973/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.805420 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2tnfA id: 2tnfA alignment found: /projects/compbio/experiments/models.97/pdb/2t/2tnfA/nostruct-align/2tnfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2tnfA/nostruct-align/2tnfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2t/2tnfA/nostruct-align/2tnfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2138/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.206360 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2tprA_1 id: 2tprA_1 alignment found: /projects/compbio4/experiments/models.97/domains/2t/2tprA_1/nostruct-align/2tprA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2t/2tprA_1/nostruct-align/2tprA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2t/2tprA_1/nostruct-align/2tprA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20910/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -23.583374 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2tprA_2 id: 2tprA_2 alignment found: /projects/compbio4/experiments/models.97/domains/2t/2tprA_2/nostruct-align/2tprA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2t/2tprA_2/nostruct-align/2tprA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2t/2tprA_2/nostruct-align/2tprA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23950/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -22.622437 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2tprA_3 id: 2tprA_3 alignment found: /projects/compbio4/experiments/models.97/domains/2t/2tprA_3/nostruct-align/2tprA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2t/2tprA_3/nostruct-align/2tprA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2t/2tprA_3/nostruct-align/2tprA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14521/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.807434 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2tpsA id: 2tpsA alignment found: /projects/compbio/experiments/models.97/pdb/2t/2tpsA/nostruct-align/2tpsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2tpsA/nostruct-align/2tpsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2t/2tpsA/nostruct-align/2tpsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-420/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -21.655457 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2trcP id: 2trcP alignment found: /projects/compbio/experiments/models.97/pdb/2t/2trcP/nostruct-align/2trcP.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2trcP/nostruct-align/2trcP.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2t/2trcP/nostruct-align/2trcP.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10375/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.223511 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2trxA id: 2trxA alignment found: /projects/compbio/experiments/models.97/pdb/2t/2trxA/nostruct-align/2trxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2trxA/nostruct-align/2trxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2t/2trxA/nostruct-align/2trxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13873/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.359375 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ts1 id: 2ts1 alignment found: /projects/compbio/experiments/models.97/pdb/2t/2ts1/nostruct-align/2ts1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2ts1/nostruct-align/2ts1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2t/2ts1/nostruct-align/2ts1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7145/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.932373 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ts1_1 id: 2ts1_1 alignment found: /projects/compbio4/experiments/models.97/domains/2t/2ts1_1/nostruct-align/2ts1_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2t/2ts1_1/nostruct-align/2ts1_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2t/2ts1_1/nostruct-align/2ts1_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27852/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.149414 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ts1_2 id: 2ts1_2 alignment found: /projects/compbio4/experiments/models.97/domains/2t/2ts1_2/nostruct-align/2ts1_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2t/2ts1_2/nostruct-align/2ts1_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2t/2ts1_2/nostruct-align/2ts1_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31099/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.153320 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2tysA id: 2tysA alignment found: /projects/compbio/experiments/models.97/pdb/2t/2tysA/nostruct-align/2tysA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2tysA/nostruct-align/2tysA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2t/2tysA/nostruct-align/2tysA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24010/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.862366 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2tysB id: 2tysB alignment found: /projects/compbio/experiments/models.97/pdb/2t/2tysB/nostruct-align/2tysB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2tysB/nostruct-align/2tysB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2t/2tysB/nostruct-align/2tysB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22751/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.856384 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2u1a id: 2u1a alignment found: /projects/compbio/experiments/models.97/pdb/2u/2u1a/nostruct-align/2u1a.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2u/2u1a/nostruct-align/2u1a.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2u/2u1a/nostruct-align/2u1a.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-821/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.844360 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2u2fA id: 2u2fA alignment found: /projects/compbio/experiments/models.97/pdb/2u/2u2fA/nostruct-align/2u2fA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2u/2u2fA/nostruct-align/2u2fA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2u/2u2fA/nostruct-align/2u2fA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10909/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.133423 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ucz id: 2ucz alignment found: /projects/compbio/experiments/models.97/pdb/2u/2ucz/nostruct-align/2ucz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2u/2ucz/nostruct-align/2ucz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2u/2ucz/nostruct-align/2ucz.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29617/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.096436 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2udpA id: 2udpA alignment found: /projects/compbio/experiments/models.97/pdb/2u/2udpA/nostruct-align/2udpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2u/2udpA/nostruct-align/2udpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2u/2udpA/nostruct-align/2udpA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18358/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.267395 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2utgA id: 2utgA alignment found: /projects/compbio/experiments/models.97/pdb/2u/2utgA/nostruct-align/2utgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2u/2utgA/nostruct-align/2utgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2u/2utgA/nostruct-align/2utgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27378/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.330444 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2vgh id: 2vgh alignment found: /projects/compbio/experiments/models.97/pdb/2v/2vgh/nostruct-align/2vgh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2v/2vgh/nostruct-align/2vgh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2v/2vgh/nostruct-align/2vgh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17242/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.269409 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2vhbA id: 2vhbA alignment found: /projects/compbio/experiments/models.97/pdb/2v/2vhbA/nostruct-align/2vhbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2v/2vhbA/nostruct-align/2vhbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2v/2vhbA/nostruct-align/2vhbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31542/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.423340 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2vhbB id: 2vhbB alignment found: /projects/compbio/experiments/models.97/pdb/2v/2vhbB/nostruct-align/2vhbB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2v/2vhbB/nostruct-align/2vhbB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2v/2vhbB/nostruct-align/2vhbB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15693/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.535400 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2vik id: 2vik alignment found: /projects/compbio/experiments/models.97/pdb/2v/2vik/nostruct-align/2vik.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2v/2vik/nostruct-align/2vik.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2v/2vik/nostruct-align/2vik.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6078/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.742310 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2vil id: 2vil alignment found: /projects/compbio/experiments/models.97/pdb/2v/2vil/nostruct-align/2vil.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2v/2vil/nostruct-align/2vil.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2v/2vil/nostruct-align/2vil.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6800/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.852417 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2viuA id: 2viuA alignment found: /projects/compbio/experiments/models.97/pdb/2v/2viuA/nostruct-align/2viuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2v/2viuA/nostruct-align/2viuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2v/2viuA/nostruct-align/2viuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6554/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.262390 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2viuB id: 2viuB alignment found: /projects/compbio/experiments/models.97/pdb/2v/2viuB/nostruct-align/2viuB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2v/2viuB/nostruct-align/2viuB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2v/2viuB/nostruct-align/2viuB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6387/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.300354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2vsgA id: 2vsgA alignment found: /projects/compbio/experiments/models.97/pdb/2v/2vsgA/nostruct-align/2vsgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2v/2vsgA/nostruct-align/2vsgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2v/2vsgA/nostruct-align/2vsgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24245/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.256348 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2wrpR id: 2wrpR alignment found: /projects/compbio/experiments/models.97/pdb/2w/2wrpR/nostruct-align/2wrpR.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2w/2wrpR/nostruct-align/2wrpR.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2w/2wrpR/nostruct-align/2wrpR.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4138/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.110474 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2xat id: 2xat alignment found: /projects/compbio/experiments/models.97/pdb/2x/2xat/nostruct-align/2xat.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2x/2xat/nostruct-align/2xat.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2x/2xat/nostruct-align/2xat.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14857/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.359436 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2xis id: 2xis alignment found: /projects/compbio/experiments/models.97/pdb/2x/2xis/nostruct-align/2xis.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2x/2xis/nostruct-align/2xis.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2x/2xis/nostruct-align/2xis.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22262/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.511353 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2yhx id: 2yhx alignment found: /projects/compbio/experiments/models.97/pdb/2y/2yhx/nostruct-align/2yhx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2y/2yhx/nostruct-align/2yhx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2y/2yhx/nostruct-align/2yhx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18983/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.978455 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2yhx_1 id: 2yhx_1 alignment found: /projects/compbio4/experiments/models.97/domains/2y/2yhx_1/nostruct-align/2yhx_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2y/2yhx_1/nostruct-align/2yhx_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2y/2yhx_1/nostruct-align/2yhx_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11151/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.749451 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2yhx_2 id: 2yhx_2 alignment found: /projects/compbio4/experiments/models.97/domains/2y/2yhx_2/nostruct-align/2yhx_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2y/2yhx_2/nostruct-align/2yhx_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2y/2yhx_2/nostruct-align/2yhx_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24027/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.551392 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2ztaA id: 2ztaA alignment found: /projects/compbio/experiments/models.97/pdb/2z/2ztaA/nostruct-align/2ztaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2z/2ztaA/nostruct-align/2ztaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2z/2ztaA/nostruct-align/2ztaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14124/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.333496 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 32c2A id: 32c2A alignment found: /projects/compbio/experiments/models.97/pdb/32/32c2A/nostruct-align/32c2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/32/32c2A/nostruct-align/32c2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/32/32c2A/nostruct-align/32c2A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26285/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.162354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 351c id: 351c alignment found: /projects/compbio/experiments/models.97/pdb/35/351c/nostruct-align/351c.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/35/351c/nostruct-align/351c.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/35/351c/nostruct-align/351c.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16396/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.142456 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3adk id: 3adk alignment found: /projects/compbio/experiments/models.97/pdb/3a/3adk/nostruct-align/3adk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3a/3adk/nostruct-align/3adk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3a/3adk/nostruct-align/3adk.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31837/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.369507 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3aig id: 3aig alignment found: /projects/compbio/experiments/models.97/pdb/3a/3aig/nostruct-align/3aig.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3a/3aig/nostruct-align/3aig.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3a/3aig/nostruct-align/3aig.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-8238/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.666504 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3bamB id: 3bamB alignment found: /projects/compbio/experiments/models.97/pdb/3b/3bamB/nostruct-align/3bamB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3b/3bamB/nostruct-align/3bamB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3b/3bamB/nostruct-align/3bamB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-13192/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.392334 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3bbg id: 3bbg alignment found: /projects/compbio/experiments/models.97/pdb/3b/3bbg/nostruct-align/3bbg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3b/3bbg/nostruct-align/3bbg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3b/3bbg/nostruct-align/3bbg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32117/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.318359 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3bct id: 3bct alignment found: /projects/compbio/experiments/models.97/pdb/3b/3bct/nostruct-align/3bct.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3b/3bct/nostruct-align/3bct.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3b/3bct/nostruct-align/3bct.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25595/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.038391 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3c2c id: 3c2c alignment found: /projects/compbio/experiments/models.97/pdb/3c/3c2c/nostruct-align/3c2c.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3c2c/nostruct-align/3c2c.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3c/3c2c/nostruct-align/3c2c.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28091/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.633423 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3cbh id: 3cbh alignment found: /projects/compbio/experiments/models.97/pdb/3c/3cbh/nostruct-align/3cbh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3cbh/nostruct-align/3cbh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3c/3cbh/nostruct-align/3cbh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8956/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.862427 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3cd4 id: 3cd4 alignment found: /projects/compbio/experiments/models.97/pdb/3c/3cd4/nostruct-align/3cd4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3cd4/nostruct-align/3cd4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3c/3cd4/nostruct-align/3cd4.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21526/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.378418 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3cd4_1 id: 3cd4_1 alignment found: /projects/compbio4/experiments/models.97/domains/3c/3cd4_1/nostruct-align/3cd4_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/3c/3cd4_1/nostruct-align/3cd4_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/3c/3cd4_1/nostruct-align/3cd4_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7271/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.374390 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3cd4_2 id: 3cd4_2 alignment found: /projects/compbio4/experiments/models.97/domains/3c/3cd4_2/nostruct-align/3cd4_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/3c/3cd4_2/nostruct-align/3cd4_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/3c/3cd4_2/nostruct-align/3cd4_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24167/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.018433 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3chbD id: 3chbD alignment found: /projects/compbio/experiments/models.97/pdb/3c/3chbD/nostruct-align/3chbD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3chbD/nostruct-align/3chbD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3c/3chbD/nostruct-align/3chbD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19815/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.333374 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3chy id: 3chy alignment found: /projects/compbio/experiments/models.97/pdb/3c/3chy/nostruct-align/3chy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3chy/nostruct-align/3chy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3c/3chy/nostruct-align/3chy.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13587/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.185425 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3cla id: 3cla alignment found: /projects/compbio/experiments/models.97/pdb/3c/3cla/nostruct-align/3cla.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3cla/nostruct-align/3cla.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3c/3cla/nostruct-align/3cla.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31845/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.235352 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3cms id: 3cms alignment found: /projects/compbio/experiments/models.97/pdb/3c/3cms/nostruct-align/3cms.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3cms/nostruct-align/3cms.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3c/3cms/nostruct-align/3cms.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32532/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.530396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3cox id: 3cox alignment found: /projects/compbio/experiments/models.97/pdb/3c/3cox/nostruct-align/3cox.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3cox/nostruct-align/3cox.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3c/3cox/nostruct-align/3cox.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3805/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -22.316467 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3crd id: 3crd alignment found: /projects/compbio/experiments/models.97/pdb/3c/3crd/nostruct-align/3crd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3crd/nostruct-align/3crd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3c/3crd/nostruct-align/3crd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30513/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.403442 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3crxA id: 3crxA alignment found: /projects/compbio/experiments/models.97/pdb/3c/3crxA/nostruct-align/3crxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3crxA/nostruct-align/3crxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3c/3crxA/nostruct-align/3crxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30898/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.938354 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3csuA id: 3csuA alignment found: /projects/compbio/experiments/models.97/pdb/3c/3csuA/nostruct-align/3csuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3csuA/nostruct-align/3csuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3c/3csuA/nostruct-align/3csuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20444/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.896362 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3cyr id: 3cyr alignment found: /projects/compbio/experiments/models.97/pdb/3c/3cyr/nostruct-align/3cyr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3cyr/nostruct-align/3cyr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3c/3cyr/nostruct-align/3cyr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9386/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.377441 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3daaA id: 3daaA alignment found: /projects/compbio/experiments/models.97/pdb/3d/3daaA/nostruct-align/3daaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3d/3daaA/nostruct-align/3daaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3d/3daaA/nostruct-align/3daaA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27942/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.895447 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3dapA id: 3dapA alignment found: /projects/compbio/experiments/models.97/pdb/3d/3dapA/nostruct-align/3dapA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3d/3dapA/nostruct-align/3dapA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3d/3dapA/nostruct-align/3dapA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10578/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.593384 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3dfr id: 3dfr alignment found: /projects/compbio/experiments/models.97/pdb/3d/3dfr/nostruct-align/3dfr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3d/3dfr/nostruct-align/3dfr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3d/3dfr/nostruct-align/3dfr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22299/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.404419 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3dni id: 3dni alignment found: /projects/compbio/experiments/models.97/pdb/3d/3dni/nostruct-align/3dni.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3d/3dni/nostruct-align/3dni.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3d/3dni/nostruct-align/3dni.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1149/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.765381 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3dpa_1 id: 3dpa_1 alignment found: /projects/compbio4/experiments/models.97/domains/3d/3dpa_1/nostruct-align/3dpa_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/3d/3dpa_1/nostruct-align/3dpa_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/3d/3dpa_1/nostruct-align/3dpa_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25792/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.756348 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3dpa_2 id: 3dpa_2 alignment found: /projects/compbio4/experiments/models.97/domains/3d/3dpa_2/nostruct-align/3dpa_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/3d/3dpa_2/nostruct-align/3dpa_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/3d/3dpa_2/nostruct-align/3dpa_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6883/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.280396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3ebx id: 3ebx alignment found: /projects/compbio/experiments/models.97/pdb/3e/3ebx/nostruct-align/3ebx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3e/3ebx/nostruct-align/3ebx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3e/3ebx/nostruct-align/3ebx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6852/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.671387 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3egf id: 3egf alignment found: /projects/compbio/experiments/models.97/pdb/3e/3egf/nostruct-align/3egf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3e/3egf/nostruct-align/3egf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3e/3egf/nostruct-align/3egf.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30387/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.440430 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3eipA id: 3eipA alignment found: /projects/compbio/experiments/models.97/pdb/3e/3eipA/nostruct-align/3eipA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3e/3eipA/nostruct-align/3eipA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3e/3eipA/nostruct-align/3eipA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18810/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.821411 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3erdA id: 3erdA alignment found: /projects/compbio/experiments/models.97/pdb/3e/3erdA/nostruct-align/3erdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3e/3erdA/nostruct-align/3erdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3e/3erdA/nostruct-align/3erdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30061/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.991333 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3eugA id: 3eugA alignment found: /projects/compbio/experiments/models.97/pdb/3e/3eugA/nostruct-align/3eugA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3e/3eugA/nostruct-align/3eugA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3e/3eugA/nostruct-align/3eugA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17228/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.262451 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3ezmA id: 3ezmA alignment found: /projects/compbio/experiments/models.97/pdb/3e/3ezmA/nostruct-align/3ezmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3e/3ezmA/nostruct-align/3ezmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3e/3ezmA/nostruct-align/3ezmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9608/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.927429 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3fib id: 3fib alignment found: /projects/compbio/experiments/models.97/pdb/3f/3fib/nostruct-align/3fib.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3f/3fib/nostruct-align/3fib.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3f/3fib/nostruct-align/3fib.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26287/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.147461 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3gatA id: 3gatA alignment found: /projects/compbio/experiments/models.97/pdb/3g/3gatA/nostruct-align/3gatA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3g/3gatA/nostruct-align/3gatA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3g/3gatA/nostruct-align/3gatA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13424/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.096436 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3gcb id: 3gcb alignment found: /projects/compbio/experiments/models.97/pdb/3g/3gcb/nostruct-align/3gcb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3g/3gcb/nostruct-align/3gcb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3g/3gcb/nostruct-align/3gcb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22524/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.730347 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3grs id: 3grs alignment found: /projects/compbio/experiments/models.97/pdb/3g/3grs/nostruct-align/3grs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3g/3grs/nostruct-align/3grs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3g/3grs/nostruct-align/3grs.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27030/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -27.983398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3hhrB id: 3hhrB alignment found: /projects/compbio/experiments/models.97/pdb/3h/3hhrB/nostruct-align/3hhrB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3h/3hhrB/nostruct-align/3hhrB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3h/3hhrB/nostruct-align/3hhrB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27875/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.709351 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3hhrB_1 id: 3hhrB_1 alignment found: /projects/compbio4/experiments/models.97/domains/3h/3hhrB_1/nostruct-align/3hhrB_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/3h/3hhrB_1/nostruct-align/3hhrB_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/3h/3hhrB_1/nostruct-align/3hhrB_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2595/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.280396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3hhrB_2 id: 3hhrB_2 alignment found: /projects/compbio4/experiments/models.97/domains/3h/3hhrB_2/nostruct-align/3hhrB_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/3h/3hhrB_2/nostruct-align/3hhrB_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/3h/3hhrB_2/nostruct-align/3hhrB_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21085/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.144409 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3htsB id: 3htsB alignment found: /projects/compbio/experiments/models.97/pdb/3h/3htsB/nostruct-align/3htsB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3h/3htsB/nostruct-align/3htsB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3h/3htsB/nostruct-align/3htsB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19443/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.596436 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3il8 id: 3il8 alignment found: /projects/compbio/experiments/models.97/pdb/3i/3il8/nostruct-align/3il8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3i/3il8/nostruct-align/3il8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3i/3il8/nostruct-align/3il8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25115/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.619507 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3inkC id: 3inkC alignment found: /projects/compbio/experiments/models.97/pdb/3i/3inkC/nostruct-align/3inkC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3i/3inkC/nostruct-align/3inkC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3i/3inkC/nostruct-align/3inkC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1841/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.709473 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3ins_1a1 id: 3ins_1a1 alignment found: /projects/compbio4/experiments/models.97/domains/3i/3ins_1a1/nostruct-align/3ins_1a1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/3i/3ins_1a1/nostruct-align/3ins_1a1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/3i/3ins_1a1/nostruct-align/3ins_1a1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4305/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.674316 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3ladA id: 3ladA alignment found: /projects/compbio/experiments/models.97/pdb/3l/3ladA/nostruct-align/3ladA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3l/3ladA/nostruct-align/3ladA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3l/3ladA/nostruct-align/3ladA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27873/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -31.470337 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3lck id: 3lck alignment found: /projects/compbio/experiments/models.97/pdb/3l/3lck/nostruct-align/3lck.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3l/3lck/nostruct-align/3lck.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3l/3lck/nostruct-align/3lck.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17045/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.205444 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3ldh id: 3ldh alignment found: /projects/compbio/experiments/models.97/pdb/3l/3ldh/nostruct-align/3ldh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3l/3ldh/nostruct-align/3ldh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3l/3ldh/nostruct-align/3ldh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6247/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.406433 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3lzt id: 3lzt alignment found: /projects/compbio/experiments/models.97/pdb/3l/3lzt/nostruct-align/3lzt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3l/3lzt/nostruct-align/3lzt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3l/3lzt/nostruct-align/3lzt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23912/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.966431 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3mag id: 3mag alignment found: /projects/compbio/experiments/models.97/pdb/3m/3mag/nostruct-align/3mag.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3m/3mag/nostruct-align/3mag.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3m/3mag/nostruct-align/3mag.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9352/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.072388 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3mddA id: 3mddA alignment found: /projects/compbio/experiments/models.97/pdb/3m/3mddA/nostruct-align/3mddA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3m/3mddA/nostruct-align/3mddA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3m/3mddA/nostruct-align/3mddA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19099/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.450439 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3mdeA id: 3mdeA alignment found: /projects/compbio/experiments/models.97/pdb/3m/3mdeA/nostruct-align/3mdeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3m/3mdeA/nostruct-align/3mdeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3m/3mdeA/nostruct-align/3mdeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11778/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.506409 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3mefA id: 3mefA alignment found: /projects/compbio/experiments/models.97/pdb/3m/3mefA/nostruct-align/3mefA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3m/3mefA/nostruct-align/3mefA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3m/3mefA/nostruct-align/3mefA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26093/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.949463 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3minB id: 3minB alignment found: /projects/compbio/experiments/models.97/pdb/3m/3minB/nostruct-align/3minB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3m/3minB/nostruct-align/3minB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3m/3minB/nostruct-align/3minB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29816/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.212341 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3minC id: 3minC alignment found: /projects/compbio/experiments/models.97/pdb/3m/3minC/nostruct-align/3minC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3m/3minC/nostruct-align/3minC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3m/3minC/nostruct-align/3minC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27614/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.640381 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3monB id: 3monB alignment found: /projects/compbio/experiments/models.97/pdb/3m/3monB/nostruct-align/3monB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3m/3monB/nostruct-align/3monB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3m/3monB/nostruct-align/3monB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19462/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.172363 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3ncmA id: 3ncmA alignment found: /projects/compbio/experiments/models.97/pdb/3n/3ncmA/nostruct-align/3ncmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3n/3ncmA/nostruct-align/3ncmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3n/3ncmA/nostruct-align/3ncmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7930/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.387451 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3nll id: 3nll alignment found: /projects/compbio/experiments/models.97/pdb/3n/3nll/nostruct-align/3nll.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3n/3nll/nostruct-align/3nll.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3n/3nll/nostruct-align/3nll.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29593/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.985352 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3nn9 id: 3nn9 alignment found: /projects/compbio/experiments/models.97/pdb/3n/3nn9/nostruct-align/3nn9.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3n/3nn9/nostruct-align/3nn9.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3n/3nn9/nostruct-align/3nn9.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-18828/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.443481 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3nodB id: 3nodB alignment found: /projects/compbio/experiments/models.97/pdb/3n/3nodB/nostruct-align/3nodB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3n/3nodB/nostruct-align/3nodB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3n/3nodB/nostruct-align/3nodB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16912/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.582458 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3nul id: 3nul alignment found: /projects/compbio/experiments/models.97/pdb/3n/3nul/nostruct-align/3nul.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3n/3nul/nostruct-align/3nul.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3n/3nul/nostruct-align/3nul.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9522/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.742432 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3ovo id: 3ovo alignment found: /projects/compbio/experiments/models.97/pdb/3o/3ovo/nostruct-align/3ovo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3o/3ovo/nostruct-align/3ovo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3o/3ovo/nostruct-align/3ovo.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25993/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.691406 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3pbgA id: 3pbgA alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pbgA/nostruct-align/3pbgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pbgA/nostruct-align/3pbgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3pbgA/nostruct-align/3pbgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11642/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.707397 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3pcgA id: 3pcgA alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pcgA/nostruct-align/3pcgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pcgA/nostruct-align/3pcgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3pcgA/nostruct-align/3pcgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8937/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.592407 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3pcgM id: 3pcgM alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pcgM/nostruct-align/3pcgM.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pcgM/nostruct-align/3pcgM.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3pcgM/nostruct-align/3pcgM.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9833/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.473389 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3pchA id: 3pchA alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pchA/nostruct-align/3pchA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pchA/nostruct-align/3pchA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3pchA/nostruct-align/3pchA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26413/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.592407 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3pchM id: 3pchM alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pchM/nostruct-align/3pchM.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pchM/nostruct-align/3pchM.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3pchM/nostruct-align/3pchM.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23316/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.473389 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3pcnA id: 3pcnA alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pcnA/nostruct-align/3pcnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pcnA/nostruct-align/3pcnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3pcnA/nostruct-align/3pcnA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12790/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.508423 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3pfk id: 3pfk alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pfk/nostruct-align/3pfk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pfk/nostruct-align/3pfk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3pfk/nostruct-align/3pfk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17771/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.867371 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3pga1 id: 3pga1 alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pga1/nostruct-align/3pga1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pga1/nostruct-align/3pga1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3pga1/nostruct-align/3pga1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2577/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.743469 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3pgk id: 3pgk alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pgk/nostruct-align/3pgk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pgk/nostruct-align/3pgk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3pgk/nostruct-align/3pgk.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26874/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.968445 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3pgm id: 3pgm alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pgm/nostruct-align/3pgm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pgm/nostruct-align/3pgm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3pgm/nostruct-align/3pgm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21457/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.361328 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3pmgA id: 3pmgA alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pmgA/nostruct-align/3pmgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pmgA/nostruct-align/3pmgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3pmgA/nostruct-align/3pmgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28784/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.421448 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3pmgA_1 id: 3pmgA_1 alignment found: /projects/compbio4/experiments/models.97/domains/3p/3pmgA_1/nostruct-align/3pmgA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/3p/3pmgA_1/nostruct-align/3pmgA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/3p/3pmgA_1/nostruct-align/3pmgA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6975/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.121460 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3pmgA_2 id: 3pmgA_2 alignment found: /projects/compbio4/experiments/models.97/domains/3p/3pmgA_2/nostruct-align/3pmgA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/3p/3pmgA_2/nostruct-align/3pmgA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/3p/3pmgA_2/nostruct-align/3pmgA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3370/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.623413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3pmgA_3 id: 3pmgA_3 alignment found: /projects/compbio4/experiments/models.97/domains/3p/3pmgA_3/nostruct-align/3pmgA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/3p/3pmgA_3/nostruct-align/3pmgA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/3p/3pmgA_3/nostruct-align/3pmgA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17890/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.964355 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3pmgA_4 id: 3pmgA_4 alignment found: /projects/compbio4/experiments/models.97/domains/3p/3pmgA_4/nostruct-align/3pmgA_4.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/3p/3pmgA_4/nostruct-align/3pmgA_4.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/3p/3pmgA_4/nostruct-align/3pmgA_4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7628/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.752441 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3prn id: 3prn alignment found: /projects/compbio/experiments/models.97/pdb/3p/3prn/nostruct-align/3prn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3prn/nostruct-align/3prn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3prn/nostruct-align/3prn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14564/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.345459 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3proC id: 3proC alignment found: /projects/compbio/experiments/models.97/pdb/3p/3proC/nostruct-align/3proC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3proC/nostruct-align/3proC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3proC/nostruct-align/3proC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21493/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.477417 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3proD id: 3proD alignment found: /projects/compbio/experiments/models.97/pdb/3p/3proD/nostruct-align/3proD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3proD/nostruct-align/3proD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3proD/nostruct-align/3proD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26461/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.718384 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3pte id: 3pte alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pte/nostruct-align/3pte.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pte/nostruct-align/3pte.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3pte/nostruct-align/3pte.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-53/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.076416 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3pvaA id: 3pvaA alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pvaA/nostruct-align/3pvaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pvaA/nostruct-align/3pvaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3pvaA/nostruct-align/3pvaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23482/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.947388 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3pviA id: 3pviA alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pviA/nostruct-align/3pviA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pviA/nostruct-align/3pviA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3pviA/nostruct-align/3pviA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15150/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.226379 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3pyp id: 3pyp alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pyp/nostruct-align/3pyp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pyp/nostruct-align/3pyp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3pyp/nostruct-align/3pyp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24413/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.008362 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3rabA id: 3rabA alignment found: /projects/compbio/experiments/models.97/pdb/3r/3rabA/nostruct-align/3rabA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3r/3rabA/nostruct-align/3rabA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3r/3rabA/nostruct-align/3rabA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20522/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.051392 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3rp2A id: 3rp2A alignment found: /projects/compbio/experiments/models.97/pdb/3r/3rp2A/nostruct-align/3rp2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3r/3rp2A/nostruct-align/3rp2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3r/3rp2A/nostruct-align/3rp2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11612/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.567444 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3rubL_1 id: 3rubL_1 alignment found: /projects/compbio4/experiments/models.97/domains/3r/3rubL_1/nostruct-align/3rubL_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/3r/3rubL_1/nostruct-align/3rubL_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/3r/3rubL_1/nostruct-align/3rubL_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26336/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.475403 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3rubL_2 id: 3rubL_2 alignment found: /projects/compbio4/experiments/models.97/domains/3r/3rubL_2/nostruct-align/3rubL_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/3r/3rubL_2/nostruct-align/3rubL_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/3r/3rubL_2/nostruct-align/3rubL_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24243/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.431396 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3rubS id: 3rubS alignment found: /projects/compbio/experiments/models.97/pdb/3r/3rubS/nostruct-align/3rubS.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3r/3rubS/nostruct-align/3rubS.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3r/3rubS/nostruct-align/3rubS.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30990/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.956421 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3sdhA id: 3sdhA alignment found: /projects/compbio/experiments/models.97/pdb/3s/3sdhA/nostruct-align/3sdhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3s/3sdhA/nostruct-align/3sdhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3s/3sdhA/nostruct-align/3sdhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14758/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.769409 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3seb id: 3seb alignment found: /projects/compbio/experiments/models.97/pdb/3s/3seb/nostruct-align/3seb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3s/3seb/nostruct-align/3seb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3s/3seb/nostruct-align/3seb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8418/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.194458 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3sil id: 3sil alignment found: /projects/compbio/experiments/models.97/pdb/3s/3sil/nostruct-align/3sil.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3s/3sil/nostruct-align/3sil.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3s/3sil/nostruct-align/3sil.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-403/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.545410 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3ssi id: 3ssi alignment found: /projects/compbio/experiments/models.97/pdb/3s/3ssi/nostruct-align/3ssi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3s/3ssi/nostruct-align/3ssi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3s/3ssi/nostruct-align/3ssi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23839/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.173401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3stdA id: 3stdA alignment found: /projects/compbio/experiments/models.97/pdb/3s/3stdA/nostruct-align/3stdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3s/3stdA/nostruct-align/3stdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3s/3stdA/nostruct-align/3stdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8443/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.950439 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3tdt id: 3tdt alignment found: /projects/compbio/experiments/models.97/pdb/3t/3tdt/nostruct-align/3tdt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3t/3tdt/nostruct-align/3tdt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3t/3tdt/nostruct-align/3tdt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1216/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.443420 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3tgf id: 3tgf alignment found: /projects/compbio/experiments/models.97/pdb/3t/3tgf/nostruct-align/3tgf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3t/3tgf/nostruct-align/3tgf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3t/3tgf/nostruct-align/3tgf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-610/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.447388 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3tgl id: 3tgl alignment found: /projects/compbio/experiments/models.97/pdb/3t/3tgl/nostruct-align/3tgl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3t/3tgl/nostruct-align/3tgl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3t/3tgl/nostruct-align/3tgl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5401/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.880371 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3thi id: 3thi alignment found: /projects/compbio/experiments/models.97/pdb/3t/3thi/nostruct-align/3thi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3t/3thi/nostruct-align/3thi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3t/3thi/nostruct-align/3thi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7797/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.496460 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3tmkA id: 3tmkA alignment found: /projects/compbio/experiments/models.97/pdb/3t/3tmkA/nostruct-align/3tmkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3t/3tmkA/nostruct-align/3tmkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3t/3tmkA/nostruct-align/3tmkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6177/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.136353 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3tss id: 3tss alignment found: /projects/compbio/experiments/models.97/pdb/3t/3tss/nostruct-align/3tss.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3t/3tss/nostruct-align/3tss.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3t/3tss/nostruct-align/3tss.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10531/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.791382 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3ullA id: 3ullA alignment found: /projects/compbio/experiments/models.97/pdb/3u/3ullA/nostruct-align/3ullA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3u/3ullA/nostruct-align/3ullA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3u/3ullA/nostruct-align/3ullA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3277/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.130493 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3vtk id: 3vtk alignment found: /projects/compbio/experiments/models.97/pdb/3v/3vtk/nostruct-align/3vtk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3v/3vtk/nostruct-align/3vtk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3v/3vtk/nostruct-align/3vtk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31776/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.534363 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3vub id: 3vub alignment found: /projects/compbio/experiments/models.97/pdb/3v/3vub/nostruct-align/3vub.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3v/3vub/nostruct-align/3vub.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3v/3vub/nostruct-align/3vub.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11967/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.137390 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 3ygsP id: 3ygsP alignment found: /projects/compbio/experiments/models.97/pdb/3y/3ygsP/nostruct-align/3ygsP.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3y/3ygsP/nostruct-align/3ygsP.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3y/3ygsP/nostruct-align/3ygsP.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6326/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.147339 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 451c id: 451c alignment found: /projects/compbio/experiments/models.97/pdb/45/451c/nostruct-align/451c.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/45/451c/nostruct-align/451c.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/45/451c/nostruct-align/451c.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22302/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.136353 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 487dL id: 487dL alignment found: /projects/compbio/experiments/models.97/pdb/48/487dL/nostruct-align/487dL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/48/487dL/nostruct-align/487dL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/48/487dL/nostruct-align/487dL.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26551/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.710449 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 4aahA id: 4aahA alignment found: /projects/compbio/experiments/models.97/pdb/4a/4aahA/nostruct-align/4aahA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4a/4aahA/nostruct-align/4aahA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4a/4aahA/nostruct-align/4aahA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9333/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.720459 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 4bcl id: 4bcl alignment found: /projects/compbio/experiments/models.97/pdb/4b/4bcl/nostruct-align/4bcl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4b/4bcl/nostruct-align/4bcl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4b/4bcl/nostruct-align/4bcl.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18123/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.915405 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 4blmA id: 4blmA alignment found: /projects/compbio/experiments/models.97/pdb/4b/4blmA/nostruct-align/4blmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4b/4blmA/nostruct-align/4blmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4b/4blmA/nostruct-align/4blmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24857/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.045410 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 4cpaI id: 4cpaI alignment found: /projects/compbio/experiments/models.97/pdb/4c/4cpaI/nostruct-align/4cpaI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4c/4cpaI/nostruct-align/4cpaI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4c/4cpaI/nostruct-align/4cpaI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7833/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.515381 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 4crxA id: 4crxA alignment found: /projects/compbio/experiments/models.97/pdb/4c/4crxA/nostruct-align/4crxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4c/4crxA/nostruct-align/4crxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4c/4crxA/nostruct-align/4crxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13911/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.271362 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 4dpvZ id: 4dpvZ alignment found: /projects/compbio/experiments/models.97/pdb/4d/4dpvZ/nostruct-align/4dpvZ.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4d/4dpvZ/nostruct-align/4dpvZ.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4d/4dpvZ/nostruct-align/4dpvZ.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22980/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.439331 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 4enl id: 4enl alignment found: /projects/compbio/experiments/models.97/pdb/4e/4enl/nostruct-align/4enl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4e/4enl/nostruct-align/4enl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4e/4enl/nostruct-align/4enl.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3465/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.750427 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 4eugA id: 4eugA alignment found: /projects/compbio/experiments/models.97/pdb/4e/4eugA/nostruct-align/4eugA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4e/4eugA/nostruct-align/4eugA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4e/4eugA/nostruct-align/4eugA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13957/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.991455 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 4fgf id: 4fgf alignment found: /projects/compbio/experiments/models.97/pdb/4f/4fgf/nostruct-align/4fgf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4f/4fgf/nostruct-align/4fgf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4f/4fgf/nostruct-align/4fgf.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26287/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.240479 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 4fiv id: 4fiv alignment found: /projects/compbio/experiments/models.97/pdb/4f/4fiv/nostruct-align/4fiv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4f/4fiv/nostruct-align/4fiv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4f/4fiv/nostruct-align/4fiv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1002/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.830322 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 4gatA id: 4gatA alignment found: /projects/compbio/experiments/models.97/pdb/4g/4gatA/nostruct-align/4gatA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4g/4gatA/nostruct-align/4gatA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4g/4gatA/nostruct-align/4gatA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14896/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.088379 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 4gcr id: 4gcr alignment found: /projects/compbio/experiments/models.97/pdb/4g/4gcr/nostruct-align/4gcr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4g/4gcr/nostruct-align/4gcr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4g/4gcr/nostruct-align/4gcr.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20294/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.133423 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 4gcr_1 id: 4gcr_1 alignment found: /projects/compbio4/experiments/models.97/domains/4g/4gcr_1/nostruct-align/4gcr_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/4g/4gcr_1/nostruct-align/4gcr_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/4g/4gcr_1/nostruct-align/4gcr_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6141/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.537476 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 4gcr_2 id: 4gcr_2 alignment found: /projects/compbio4/experiments/models.97/domains/4g/4gcr_2/nostruct-align/4gcr_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/4g/4gcr_2/nostruct-align/4gcr_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/4g/4gcr_2/nostruct-align/4gcr_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8188/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.897339 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 4hb1 id: 4hb1 alignment found: /projects/compbio/experiments/models.97/pdb/4h/4hb1/nostruct-align/4hb1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4h/4hb1/nostruct-align/4hb1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4h/4hb1/nostruct-align/4hb1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9049/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.746338 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 4htcI id: 4htcI alignment found: /projects/compbio/experiments/models.97/pdb/4h/4htcI/nostruct-align/4htcI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4h/4htcI/nostruct-align/4htcI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4h/4htcI/nostruct-align/4htcI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12140/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.047363 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 4icb id: 4icb alignment found: /projects/compbio/experiments/models.97/pdb/4i/4icb/nostruct-align/4icb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4i/4icb/nostruct-align/4icb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4i/4icb/nostruct-align/4icb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8496/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.904297 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 4kbpA id: 4kbpA alignment found: /projects/compbio/experiments/models.97/pdb/4k/4kbpA/nostruct-align/4kbpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4k/4kbpA/nostruct-align/4kbpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4k/4kbpA/nostruct-align/4kbpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30648/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.548340 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 4lbd id: 4lbd alignment found: /projects/compbio/experiments/models.97/pdb/4l/4lbd/nostruct-align/4lbd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4l/4lbd/nostruct-align/4lbd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4l/4lbd/nostruct-align/4lbd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10490/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.599365 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 4mbp id: 4mbp alignment found: /projects/compbio/experiments/models.97/pdb/4m/4mbp/nostruct-align/4mbp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4m/4mbp/nostruct-align/4mbp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4m/4mbp/nostruct-align/4mbp.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4528/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.239380 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 4mt2 id: 4mt2 alignment found: /projects/compbio/experiments/models.97/pdb/4m/4mt2/nostruct-align/4mt2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4m/4mt2/nostruct-align/4mt2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4m/4mt2/nostruct-align/4mt2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28810/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.142395 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 4pah id: 4pah alignment found: /projects/compbio/experiments/models.97/pdb/4p/4pah/nostruct-align/4pah.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4p/4pah/nostruct-align/4pah.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4p/4pah/nostruct-align/4pah.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4076/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.011475 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 4pgaA id: 4pgaA alignment found: /projects/compbio/experiments/models.97/pdb/4p/4pgaA/nostruct-align/4pgaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4p/4pgaA/nostruct-align/4pgaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4p/4pgaA/nostruct-align/4pgaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21357/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.737366 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 4rhv4 id: 4rhv4 alignment found: /projects/compbio/experiments/models.97/pdb/4r/4rhv4/nostruct-align/4rhv4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4r/4rhv4/nostruct-align/4rhv4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4r/4rhv4/nostruct-align/4rhv4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7535/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.751465 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 4rnpA id: 4rnpA alignment found: /projects/compbio/experiments/models.97/pdb/4r/4rnpA/nostruct-align/4rnpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4r/4rnpA/nostruct-align/4rnpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4r/4rnpA/nostruct-align/4rnpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1867/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.659302 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 4sgbI id: 4sgbI alignment found: /projects/compbio/experiments/models.97/pdb/4s/4sgbI/nostruct-align/4sgbI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4s/4sgbI/nostruct-align/4sgbI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4s/4sgbI/nostruct-align/4sgbI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20521/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.110413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 4sli id: 4sli alignment found: /projects/compbio/experiments/models.97/pdb/4s/4sli/nostruct-align/4sli.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4s/4sli/nostruct-align/4sli.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4s/4sli/nostruct-align/4sli.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9334/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.786377 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 4tgf id: 4tgf alignment found: /projects/compbio/experiments/models.97/pdb/4t/4tgf/nostruct-align/4tgf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4t/4tgf/nostruct-align/4tgf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4t/4tgf/nostruct-align/4tgf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11657/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.447388 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 4tsvA id: 4tsvA alignment found: /projects/compbio/experiments/models.97/pdb/4t/4tsvA/nostruct-align/4tsvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4t/4tsvA/nostruct-align/4tsvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4t/4tsvA/nostruct-align/4tsvA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7438/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.948486 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 4uagA id: 4uagA alignment found: /projects/compbio/experiments/models.97/pdb/4u/4uagA/nostruct-align/4uagA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4u/4uagA/nostruct-align/4uagA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4u/4uagA/nostruct-align/4uagA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17589/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.338440 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 4ubpA id: 4ubpA alignment found: /projects/compbio/experiments/models.97/pdb/4u/4ubpA/nostruct-align/4ubpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4u/4ubpA/nostruct-align/4ubpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4u/4ubpA/nostruct-align/4ubpA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32680/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.272461 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 4ubpB id: 4ubpB alignment found: /projects/compbio/experiments/models.97/pdb/4u/4ubpB/nostruct-align/4ubpB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4u/4ubpB/nostruct-align/4ubpB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4u/4ubpB/nostruct-align/4ubpB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19333/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.718384 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 4ubpC id: 4ubpC alignment found: /projects/compbio/experiments/models.97/pdb/4u/4ubpC/nostruct-align/4ubpC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4u/4ubpC/nostruct-align/4ubpC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4u/4ubpC/nostruct-align/4ubpC.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22516/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -19.783447 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 4ull id: 4ull alignment found: /projects/compbio/experiments/models.97/pdb/4u/4ull/nostruct-align/4ull.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4u/4ull/nostruct-align/4ull.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4u/4ull/nostruct-align/4ull.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20107/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.733398 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 4xis id: 4xis alignment found: /projects/compbio/experiments/models.97/pdb/4x/4xis/nostruct-align/4xis.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4x/4xis/nostruct-align/4xis.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4x/4xis/nostruct-align/4xis.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23509/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.159424 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 5csmA id: 5csmA alignment found: /projects/compbio/experiments/models.97/pdb/5c/5csmA/nostruct-align/5csmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5c/5csmA/nostruct-align/5csmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5c/5csmA/nostruct-align/5csmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8053/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.216370 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 5cytR id: 5cytR alignment found: /projects/compbio/experiments/models.97/pdb/5c/5cytR/nostruct-align/5cytR.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5c/5cytR/nostruct-align/5cytR.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5c/5cytR/nostruct-align/5cytR.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10859/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.876465 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 5eat id: 5eat alignment found: /projects/compbio/experiments/models.97/pdb/5e/5eat/nostruct-align/5eat.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5e/5eat/nostruct-align/5eat.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5e/5eat/nostruct-align/5eat.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29099/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.244385 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 5eau id: 5eau alignment found: /projects/compbio/experiments/models.97/pdb/5e/5eau/nostruct-align/5eau.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5e/5eau/nostruct-align/5eau.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5e/5eau/nostruct-align/5eau.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24910/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.185425 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 5fbpA id: 5fbpA alignment found: /projects/compbio/experiments/models.97/pdb/5f/5fbpA/nostruct-align/5fbpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5f/5fbpA/nostruct-align/5fbpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5f/5fbpA/nostruct-align/5fbpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10638/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.023315 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 5hpgA id: 5hpgA alignment found: /projects/compbio/experiments/models.97/pdb/5h/5hpgA/nostruct-align/5hpgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5h/5hpgA/nostruct-align/5hpgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5h/5hpgA/nostruct-align/5hpgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4936/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.189331 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 5icb id: 5icb alignment found: /projects/compbio/experiments/models.97/pdb/5i/5icb/nostruct-align/5icb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5i/5icb/nostruct-align/5icb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5i/5icb/nostruct-align/5icb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21580/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.796387 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 5nn9 id: 5nn9 alignment found: /projects/compbio/experiments/models.97/pdb/5n/5nn9/nostruct-align/5nn9.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5n/5nn9/nostruct-align/5nn9.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5n/5nn9/nostruct-align/5nn9.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29100/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.451416 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 5nul id: 5nul alignment found: /projects/compbio/experiments/models.97/pdb/5n/5nul/nostruct-align/5nul.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5n/5nul/nostruct-align/5nul.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5n/5nul/nostruct-align/5nul.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23524/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.007446 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 5p21 id: 5p21 alignment found: /projects/compbio/experiments/models.97/pdb/5p/5p21/nostruct-align/5p21.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5p/5p21/nostruct-align/5p21.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5p/5p21/nostruct-align/5p21.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2410/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.754395 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 5pal id: 5pal alignment found: /projects/compbio/experiments/models.97/pdb/5p/5pal/nostruct-align/5pal.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5p/5pal/nostruct-align/5pal.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5p/5pal/nostruct-align/5pal.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21172/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.699463 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 5pti id: 5pti alignment found: /projects/compbio/experiments/models.97/pdb/5p/5pti/nostruct-align/5pti.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5p/5pti/nostruct-align/5pti.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5p/5pti/nostruct-align/5pti.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19529/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.967407 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 5ptp id: 5ptp alignment found: /projects/compbio/experiments/models.97/pdb/5p/5ptp/nostruct-align/5ptp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5p/5ptp/nostruct-align/5ptp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5p/5ptp/nostruct-align/5ptp.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-475/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.880371 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 5rubA id: 5rubA alignment found: /projects/compbio/experiments/models.97/pdb/5r/5rubA/nostruct-align/5rubA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5r/5rubA/nostruct-align/5rubA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5r/5rubA/nostruct-align/5rubA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12707/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.932373 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 5rubA_1 id: 5rubA_1 alignment found: /projects/compbio4/experiments/models.97/domains/5r/5rubA_1/nostruct-align/5rubA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/5r/5rubA_1/nostruct-align/5rubA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/5r/5rubA_1/nostruct-align/5rubA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4716/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.347473 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 5rubA_2 id: 5rubA_2 alignment found: /projects/compbio4/experiments/models.97/domains/5r/5rubA_2/nostruct-align/5rubA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/5r/5rubA_2/nostruct-align/5rubA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/5r/5rubA_2/nostruct-align/5rubA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-433/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.937439 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 5tmp id: 5tmp alignment found: /projects/compbio/experiments/models.97/pdb/5t/5tmp/nostruct-align/5tmp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5t/5tmp/nostruct-align/5tmp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5t/5tmp/nostruct-align/5tmp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22814/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.804443 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 5tmpA id: 5tmpA alignment found: /projects/compbio/experiments/models.97/pdb/5t/5tmpA/nostruct-align/5tmpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5t/5tmpA/nostruct-align/5tmpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5t/5tmpA/nostruct-align/5tmpA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28047/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.476440 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 5ukdA id: 5ukdA alignment found: /projects/compbio/experiments/models.97/pdb/5u/5ukdA/nostruct-align/5ukdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5u/5ukdA/nostruct-align/5ukdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5u/5ukdA/nostruct-align/5ukdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18451/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.433472 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 5znf id: 5znf alignment found: /projects/compbio/experiments/models.97/pdb/5z/5znf/nostruct-align/5znf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5z/5znf/nostruct-align/5znf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5z/5znf/nostruct-align/5znf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5699/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.048340 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 6cel id: 6cel alignment found: /projects/compbio/experiments/models.97/pdb/6c/6cel/nostruct-align/6cel.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/6c/6cel/nostruct-align/6cel.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/6c/6cel/nostruct-align/6cel.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4068/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.773376 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 6gsvA id: 6gsvA alignment found: /projects/compbio/experiments/models.97/pdb/6g/6gsvA/nostruct-align/6gsvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/6g/6gsvA/nostruct-align/6gsvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/6g/6gsvA/nostruct-align/6gsvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24489/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.182373 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 6mhtA id: 6mhtA alignment found: /projects/compbio/experiments/models.97/pdb/6m/6mhtA/nostruct-align/6mhtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/6m/6mhtA/nostruct-align/6mhtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/6m/6mhtA/nostruct-align/6mhtA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1225/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.186462 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 6paxA id: 6paxA alignment found: /projects/compbio/experiments/models.97/pdb/6p/6paxA/nostruct-align/6paxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/6p/6paxA/nostruct-align/6paxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/6p/6paxA/nostruct-align/6paxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22036/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.788391 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 6pfkA id: 6pfkA alignment found: /projects/compbio/experiments/models.97/pdb/6p/6pfkA/nostruct-align/6pfkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/6p/6pfkA/nostruct-align/6pfkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/6p/6pfkA/nostruct-align/6pfkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26497/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.895386 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 6prcC id: 6prcC alignment found: /projects/compbio/experiments/models.97/pdb/6p/6prcC/nostruct-align/6prcC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/6p/6prcC/nostruct-align/6prcC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/6p/6prcC/nostruct-align/6prcC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22985/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.776367 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 6prcH id: 6prcH alignment found: /projects/compbio/experiments/models.97/pdb/6p/6prcH/nostruct-align/6prcH.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/6p/6prcH/nostruct-align/6prcH.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/6p/6prcH/nostruct-align/6prcH.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13865/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.221375 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 6prcL id: 6prcL alignment found: /projects/compbio/experiments/models.97/pdb/6p/6prcL/nostruct-align/6prcL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/6p/6prcL/nostruct-align/6prcL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/6p/6prcL/nostruct-align/6prcL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7305/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.977417 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 6prcM id: 6prcM alignment found: /projects/compbio/experiments/models.97/pdb/6p/6prcM/nostruct-align/6prcM.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/6p/6prcM/nostruct-align/6prcM.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/6p/6prcM/nostruct-align/6prcM.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22971/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.998413 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 6rlxA id: 6rlxA alignment found: /projects/compbio/experiments/models.97/pdb/6r/6rlxA/nostruct-align/6rlxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/6r/6rlxA/nostruct-align/6rlxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/6r/6rlxA/nostruct-align/6rlxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6528/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.548401 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 6rlxB id: 6rlxB alignment found: /projects/compbio/experiments/models.97/pdb/6r/6rlxB/nostruct-align/6rlxB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/6r/6rlxB/nostruct-align/6rlxB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/6r/6rlxB/nostruct-align/6rlxB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1664/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.381470 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 6rlx_1a1 id: 6rlx_1a1 alignment found: /projects/compbio4/experiments/models.97/domains/6r/6rlx_1a1/nostruct-align/6rlx_1a1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/6r/6rlx_1a1/nostruct-align/6rlx_1a1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/6r/6rlx_1a1/nostruct-align/6rlx_1a1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11290/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.468384 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 6rxn id: 6rxn alignment found: /projects/compbio/experiments/models.97/pdb/6r/6rxn/nostruct-align/6rxn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/6r/6rxn/nostruct-align/6rxn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/6r/6rxn/nostruct-align/6rxn.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11148/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.778442 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 7a3hA id: 7a3hA alignment found: /projects/compbio/experiments/models.97/pdb/7a/7a3hA/nostruct-align/7a3hA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/7a/7a3hA/nostruct-align/7a3hA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/7a/7a3hA/nostruct-align/7a3hA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16156/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.520386 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 7aatA id: 7aatA alignment found: /projects/compbio/experiments/models.97/pdb/7a/7aatA/nostruct-align/7aatA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/7a/7aatA/nostruct-align/7aatA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/7a/7aatA/nostruct-align/7aatA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16864/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.972351 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 7ahlA id: 7ahlA alignment found: /projects/compbio/experiments/models.97/pdb/7a/7ahlA/nostruct-align/7ahlA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/7a/7ahlA/nostruct-align/7ahlA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/7a/7ahlA/nostruct-align/7ahlA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11378/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.152466 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 7apiB id: 7apiB alignment found: /projects/compbio/experiments/models.97/pdb/7a/7apiB/nostruct-align/7apiB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/7a/7apiB/nostruct-align/7apiB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/7a/7apiB/nostruct-align/7apiB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15403/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.695435 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 7at1B id: 7at1B alignment found: /projects/compbio/experiments/models.97/pdb/7a/7at1B/nostruct-align/7at1B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/7a/7at1B/nostruct-align/7at1B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/7a/7at1B/nostruct-align/7at1B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20845/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.076355 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 7atjA id: 7atjA alignment found: /projects/compbio/experiments/models.97/pdb/7a/7atjA/nostruct-align/7atjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/7a/7atjA/nostruct-align/7atjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/7a/7atjA/nostruct-align/7atjA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8088/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.105347 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 7fd1 id: 7fd1 alignment found: /projects/compbio/experiments/models.97/pdb/7f/7fd1/nostruct-align/7fd1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/7f/7fd1/nostruct-align/7fd1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/7f/7fd1/nostruct-align/7fd1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30170/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.927429 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 7fd1A id: 7fd1A alignment found: /projects/compbio/experiments/models.97/pdb/7f/7fd1A/nostruct-align/7fd1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/7f/7fd1A/nostruct-align/7fd1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/7f/7fd1A/nostruct-align/7fd1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17438/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.330444 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 7icd id: 7icd alignment found: /projects/compbio/experiments/models.97/pdb/7i/7icd/nostruct-align/7icd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/7i/7icd/nostruct-align/7icd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/7i/7icd/nostruct-align/7icd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9704/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.964417 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 7odcA id: 7odcA alignment found: /projects/compbio/experiments/models.97/pdb/7o/7odcA/nostruct-align/7odcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/7o/7odcA/nostruct-align/7odcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/7o/7odcA/nostruct-align/7odcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14453/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.545349 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 7rsa id: 7rsa alignment found: /projects/compbio/experiments/models.97/pdb/7r/7rsa/nostruct-align/7rsa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/7r/7rsa/nostruct-align/7rsa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/7r/7rsa/nostruct-align/7rsa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7142/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.501343 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 7taa id: 7taa alignment found: /projects/compbio/experiments/models.97/pdb/7t/7taa/nostruct-align/7taa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/7t/7taa/nostruct-align/7taa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/7t/7taa/nostruct-align/7taa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17114/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.111450 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 8abp id: 8abp alignment found: /projects/compbio/experiments/models.97/pdb/8a/8abp/nostruct-align/8abp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/8a/8abp/nostruct-align/8abp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/8a/8abp/nostruct-align/8abp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5394/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.904419 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 8acn id: 8acn alignment found: /projects/compbio/experiments/models.97/pdb/8a/8acn/nostruct-align/8acn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/8a/8acn/nostruct-align/8acn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/8a/8acn/nostruct-align/8acn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31757/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.580383 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 8atcB id: 8atcB alignment found: /projects/compbio/experiments/models.97/pdb/8a/8atcB/nostruct-align/8atcB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/8a/8atcB/nostruct-align/8atcB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/8a/8atcB/nostruct-align/8atcB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24368/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.860474 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 8dfr id: 8dfr alignment found: /projects/compbio/experiments/models.97/pdb/8d/8dfr/nostruct-align/8dfr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/8d/8dfr/nostruct-align/8dfr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/8d/8dfr/nostruct-align/8dfr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14801/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.467407 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 8fabA id: 8fabA alignment found: /projects/compbio/experiments/models.97/pdb/8f/8fabA/nostruct-align/8fabA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/8f/8fabA/nostruct-align/8fabA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/8f/8fabA/nostruct-align/8fabA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21317/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.517334 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 8fabB id: 8fabB alignment found: /projects/compbio/experiments/models.97/pdb/8f/8fabB/nostruct-align/8fabB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/8f/8fabB/nostruct-align/8fabB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/8f/8fabB/nostruct-align/8fabB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23390/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.959473 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 8kme2 id: 8kme2 alignment found: /projects/compbio/experiments/models.97/pdb/8k/8kme2/nostruct-align/8kme2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/8k/8kme2/nostruct-align/8kme2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/8k/8kme2/nostruct-align/8kme2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29094/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.474365 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 8ohm id: 8ohm alignment found: /projects/compbio/experiments/models.97/pdb/8o/8ohm/nostruct-align/8ohm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/8o/8ohm/nostruct-align/8ohm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/8o/8ohm/nostruct-align/8ohm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30068/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.730347 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 8prkA id: 8prkA alignment found: /projects/compbio/experiments/models.97/pdb/8p/8prkA/nostruct-align/8prkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/8p/8prkA/nostruct-align/8prkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/8p/8prkA/nostruct-align/8prkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18738/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.564453 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 8prkB id: 8prkB alignment found: /projects/compbio/experiments/models.97/pdb/8p/8prkB/nostruct-align/8prkB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/8p/8prkB/nostruct-align/8prkB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/8p/8prkB/nostruct-align/8prkB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-28024/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.371338 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 8rucI id: 8rucI alignment found: /projects/compbio/experiments/models.97/pdb/8r/8rucI/nostruct-align/8rucI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/8r/8rucI/nostruct-align/8rucI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/8r/8rucI/nostruct-align/8rucI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15852/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.957397 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 8rxnA id: 8rxnA alignment found: /projects/compbio/experiments/models.97/pdb/8r/8rxnA/nostruct-align/8rxnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/8r/8rxnA/nostruct-align/8rxnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/8r/8rxnA/nostruct-align/8rxnA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7219/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.017334 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 8tlnE id: 8tlnE alignment found: /projects/compbio/experiments/models.97/pdb/8t/8tlnE/nostruct-align/8tlnE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/8t/8tlnE/nostruct-align/8tlnE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/8t/8tlnE/nostruct-align/8tlnE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22898/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.838379 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 9api_1a1 id: 9api_1a1 alignment found: /projects/compbio4/experiments/models.97/domains/9a/9api_1a1/nostruct-align/9api_1a1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/9a/9api_1a1/nostruct-align/9api_1a1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/9a/9api_1a1/nostruct-align/9api_1a1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19423/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.598389 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 9rnt id: 9rnt alignment found: /projects/compbio/experiments/models.97/pdb/9r/9rnt/nostruct-align/9rnt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/9r/9rnt/nostruct-align/9rnt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/9r/9rnt/nostruct-align/9rnt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31867/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.250366 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 9wgaA id: 9wgaA alignment found: /projects/compbio/experiments/models.97/pdb/9w/9wgaA/nostruct-align/9wgaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/9w/9wgaA/nostruct-align/9wgaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/9w/9wgaA/nostruct-align/9wgaA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22801/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.657410 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2oneA id: 2oneA alignment found: /projects/compbio/experiments/models.97/pdb/2o/2oneA/nostruct-align/2oneA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2oneA/nostruct-align/2oneA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2o/2oneA/nostruct-align/2oneA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-25134/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.818359 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 1qh7A id: 1qh7A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qh7A/nostruct-align/1qh7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qh7A/nostruct-align/1qh7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qh7A/nostruct-align/1qh7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20932/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.140381 Database has 1 sequences with 352 residues. entering get_template_model_for_db_search: template_id: 2hsdA id: 2hsdA alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hsdA/nostruct-align/2hsdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hsdA/nostruct-align/2hsdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hsdA/nostruct-align/2hsdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26135/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -21.145386 Database has 1 sequences with 352 residues.