PFRMAT SS TARGET T0112 AUTHOR 3670-4530-6947 METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 10 METHOD 7 10 METHOD 5 10 METHOD 11 3 (1 EHL2 ) METHOD The input amino acid frequencies were determined from METHOD alignment T0112.t2k.a2m.gz METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10) METHOD The weighting was determined by the posterior distribution METHOD after regularizing with /projects/compbio/lib/recode3.20comp. METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 456.756 METHOD MODEL 1 M C 0.472 A H 0.626 S H 0.702 D H 0.737 N H 0.690 L H 0.581 S H 0.581 A H 0.499 V E 0.555 L E 0.474 Y C 0.744 K C 0.952 Q C 0.944 N C 0.891 D C 0.589 L E 0.818 R E 0.933 L E 0.947 E E 0.915 Q E 0.803 R E 0.576 P C 0.587 I C 0.756 P C 0.774 E C 0.784 P C 0.839 K C 0.946 E C 0.962 D C 0.948 E C 0.548 V E 0.903 L E 0.982 L E 0.993 Q E 0.995 M E 0.996 A E 0.992 Y E 0.970 V E 0.878 G E 0.729 I C 0.520 C C 0.828 G C 0.562 S H 0.484 D H 0.559 V H 0.446 H H 0.447 Y E 0.497 Y E 0.493 E E 0.494 H C 0.641 G C 0.928 R C 0.819 I C 0.795 A C 0.868 D C 0.877 F C 0.867 I C 0.868 V C 0.851 K C 0.861 D C 0.901 P C 0.871 M C 0.697 V C 0.573 I C 0.671 G C 0.795 H C 0.645 E C 0.479 A E 0.419 S E 0.632 G E 0.791 T E 0.849 V E 0.916 V E 0.903 K E 0.851 V E 0.641 G C 0.789 K C 0.912 N C 0.919 V C 0.818 K C 0.691 H C 0.488 L E 0.536 K C 0.575 K C 0.698 G C 0.775 D E 0.565 R E 0.805 V E 0.921 A E 0.915 V E 0.770 E E 0.541 P C 0.577 G C 0.690 V C 0.782 P C 0.800 C C 0.836 R C 0.845 R C 0.809 C C 0.934 Q C 0.748 F C 0.667 C C 0.504 K C 0.501 E C 0.564 G C 0.779 K C 0.699 Y C 0.640 N C 0.645 L C 0.636 C C 0.815 P C 0.904 D C 0.923 L C 0.822 T C 0.630 F E 0.508 C E 0.500 A C 0.618 T C 0.715 P C 0.740 P C 0.826 D C 0.867 D C 0.820 G C 0.698 N C 0.523 L E 0.591 A E 0.708 R E 0.782 Y E 0.854 Y E 0.866 V E 0.851 H E 0.730 A C 0.709 A C 0.602 D C 0.620 F C 0.498 C E 0.540 H E 0.718 K E 0.648 L C 0.655 P C 0.932 D C 0.939 N C 0.945 V C 0.944 S C 0.956 L H 0.853 E H 0.853 E H 0.892 G H 0.764 A H 0.716 L H 0.548 L C 0.620 E C 0.802 P H 0.609 L H 0.706 S H 0.781 V H 0.848 G H 0.923 V H 0.949 H H 0.966 A H 0.951 C H 0.942 R H 0.938 R H 0.887 A H 0.588 G C 0.957 V C 0.869 Q C 0.917 L C 0.952 G C 0.959 T C 0.675 T E 0.746 V E 0.957 L E 0.990 V E 0.983 I E 0.890 G E 0.503 A C 0.873 G C 0.875 P H 0.900 I H 0.967 G H 0.993 L H 0.996 V H 0.998 S H 0.999 V H 0.999 L H 0.998 A H 0.996 A H 0.995 K H 0.991 A H 0.973 Y H 0.924 G C 0.978 A C 0.971 F C 0.526 V E 0.929 V E 0.985 C E 0.967 T E 0.822 A C 0.577 R C 0.919 S C 0.977 P H 0.935 R H 0.965 R H 0.981 L H 0.983 E H 0.982 V H 0.980 A H 0.979 K H 0.971 N H 0.960 C H 0.895 G C 0.980 A C 0.984 D C 0.920 V C 0.664 T C 0.453 L C 0.378 V E 0.530 V E 0.507 D C 0.743 P C 0.819 A C 0.871 K C 0.864 E C 0.872 E C 0.858 E C 0.733 S C 0.694 S H 0.614 I H 0.985 I H 0.993 E H 0.997 R H 0.997 I H 0.995 R H 0.991 S H 0.982 A H 0.972 I H 0.890 G H 0.666 D C 0.634 L C 0.951 P C 0.880 N C 0.777 V E 0.963 T E 0.989 I E 0.964 D E 0.807 C C 0.602 S C 0.772 G C 0.848 N C 0.503 E H 0.792 K H 0.875 C H 0.906 I H 0.958 T H 0.973 I H 0.980 G H 0.980 I H 0.976 N H 0.970 I H 0.938 T H 0.864 R C 0.742 T C 0.837 G C 0.980 G C 0.774 T E 0.787 L E 0.972 M E 0.989 L E 0.975 V E 0.924 G E 0.698 M C 0.590 G C 0.835 S C 0.921 Q C 0.913 M C 0.860 V C 0.841 T C 0.814 V C 0.769 P C 0.811 L H 0.743 V H 0.786 N H 0.827 A H 0.692 C H 0.598 A H 0.445 R C 0.582 E C 0.584 I E 0.564 D E 0.737 I E 0.857 K E 0.829 S E 0.737 V E 0.582 F C 0.590 R C 0.795 Y C 0.840 C C 0.656 N C 0.560 D H 0.548 Y H 0.974 P H 0.987 I H 0.992 A H 0.991 L H 0.990 E H 0.986 M H 0.981 V H 0.960 A H 0.933 S H 0.859 G C 0.972 R C 0.920 C C 0.711 N C 0.790 V C 0.647 K C 0.733 Q C 0.670 L C 0.719 V C 0.606 T C 0.527 H E 0.535 S E 0.610 F C 0.492 K C 0.803 L H 0.873 E H 0.911 Q H 0.951 T H 0.977 V H 0.991 D H 0.995 A H 0.997 F H 0.997 E H 0.995 A H 0.991 A H 0.981 R H 0.951 K H 0.866 K C 0.829 A C 0.907 D C 0.903 N C 0.844 T C 0.637 I E 0.741 K E 0.927 V E 0.982 M E 0.993 I E 0.975 S E 0.860 C C 0.556 R C 0.837 Q C 0.895 G C 0.960 END