\relax 
\@writefile{lof}{\contentsline {figure}{\numberline {1}{\ignorespaces Comparison of candidate ../1pedA-T0112-fssp-global.pw.a2m (lines) to reference ../1pedA-T0112-local.pw.a2m (letters). Reference alignment has 331 matching columns, Candidate alignment has 308 matching columns. 4 were used (for template shift+target shift) to compute shift score. The shift score is 0.000000, with a min shift of 270, max shift of 0, and mean of 0.000000. Optimal subalignment has 270 matching columns, with 313 paired matches. 0 were used (for template shift+target shift) to compute shift score. Optimum shift score is 0.861220, with a min shift of 589, max shift of 0, and mean of 0.193519. Optimum achieved by removing the 81 columns indicated with dotted lines from the candidate alignment. }}{1}}