make -k T0111-blast.rdb T0111-double-blast.rdb make[1]: Entering directory `/auto/projects/compbio/experiments/casp4/t111' /projects/compbio/experiments/casp4/scripts/single-blast -q T0111.seq -interdb /projects/compbio/data/nrp/nr -db /projects/compbio/data/pdb/all-protein > T0111-blast.rdb starting T0111 with E=10 /projects/compbio/experiments/casp4/scripts/double-blast -q T0111.seq -interdb /projects/compbio/data/nrp/nr -db /projects/compbio/data/pdb/all-protein > T0111-double-blast.rdb starting T0111 with E=0.000050 T0111 T0111 blasting: T0111 gi|119351|sp|P15007|ENO_DROME_3:433 blasting: T0111 gi|119350|sp|P25696|ENO_ARATH_4:434 blasting: T0111 gi|399427|sp|P31683|ENO_CHLRE_1:364 blasting: T0111 gi|119354|sp|P26300|ENO_LYCES_4:434 blasting: T0111 gi|119355|sp|P26301|ENO1_MAIZE_5:438 blasting: T0111 gi|416950|sp|P13929|ENOB_HUMAN_5:427 blasting: T0111 gi|105934|pir||S06756_5:427 blasting: T0111 gi|119340|sp|P17182|ENOA_MOUSE_3:426 blasting: T0111 gi|119338|sp|P19140|ENOA_ANAPL_3:426 blasting: T0111 gi|119356|sp|P08734|ENO_XENLA_3:426 blasting: T0111 gi|119353|sp|P29201|ENO_HALMA_10:397 blasting: T0111 gi|82083|pir||JQ1186_2:324 blasting: T0111 gi|85411|pir||B32132_54:95 blasting: T0111 gi|85411|pir||B32132_1:19 blasting: T0111 gi|85925|pir||C32132_40:121 blasting: T0111 gi|85925|pir||C32132_173:194 blasting: T0111 gi|85925|pir||C32132_123:132 blasting: T0111 gi|86253|pir||A23850_2:426 blasting: T0111 gi|119349|sp|P07323|ENOG_RAT_3:425 blasting: T0111 gi|126792|sp|P22712|MBP1_HUMAN_110:327 blasting: T0111 gi|109215|pir||A37210_4:426 blasting: T0111 gi|119336|sp|P00924|ENO1_YEAST_3:428 blasting: T0111 gi|119347|sp|P09104|ENOG_HUMAN_3:425 blasting: T0111 gi|147479|gb|AAA24486.1|_2:123 blasting: T0111 gi|462012|sp|P33675|ENO_ZYMMO_4:425 blasting: T0111 gi|232054|sp|P30575|ENO1_CANAL_2:432 blasting: T0111 gi|2118304|pir||I56569_7:399 blasting: T0111 gi|213085|gb|AAA49217.1|_1:369 blasting: T0111 gi|226366|prf||1508181A_92:261 blasting: T0111 gi|226366|prf||1508181A_2:30 blasting: T0111 gi|226366|prf||1508181A_333:370 blasting: T0111 gi|230999|pdb|4ENL|_2:427 blasting: T0111 gi|462011|sp|P33676|ENO_SCHJA_3:427 blasting: T0111 gi|387144|gb|AAA37554.1|_1:369 blasting: T0111 gi|3023709|sp|Q27727|ENO_PLAFA_5:440 blasting: T0111 gi|543068|pir||A48292_3:80 blasting: T0111 gi|543068|pir||A48292_1067:1110 blasting: T0111 gi|1169534|sp|P42896|ENO_RICCO_5:437 blasting: T0111 gi|2118305|pir||A41835_4:421 blasting: T0111 gi|1086120|pir||S43113_3:431 blasting: T0111 gi|1169529|sp|P42897|ENO_ALLMI_11:395 blasting: T0111 gi|482674|pir||A61009_1:49 blasting: T0111 gi|482674|pir||A61009_46:57 blasting: T0111 gi|482678|pir||A61017_1:156 blasting: T0111 gi|1706652|sp|P51555|ENO1_ENTHI_3:429 blasting: T0111 gi|3023708|sp|Q27655|ENO_FASHE_3:425 blasting: T0111 gi|1169533|sp|P42894|ENO_NEOFR_3:429 blasting: T0111 gi|529100|dbj|BAA07118.1|_20:330 blasting: T0111 gi|7436880|pir||S77797_2:62 blasting: T0111 gi|7436883|pir||T12341_5:434 blasting: T0111 gi|729421|sp|P40370|ENO1_SCHPO_3:427 blasting: T0111 gi|563868|emb|CAA57795.1|_2:420 blasting: T0111 gi|1169528|sp|P42895|ENO2_MAIZE_5:438 blasting: T0111 gi|627094|pir||A53665_3:425 blasting: T0111 gi|687250|gb|AAC43380.1|_11:178 blasting: T0111 gi|693933|emb|CAA59331.1|_3:426 blasting: T0111 gi|775203|gb|AAC48992.1|_1:311 blasting: T0111 gi|3023713|sp|Q42971|ENO_ORYSA_5:438 blasting: T0111 gi|1706655|sp|P08324|ENO_ECOLI_2:432 blasting: T0111 gi|893406|dbj|BAA04612.1|_2:79 blasting: T0111 gi|930063|emb|CAA31512.1|_2:424 blasting: T0111 gi|1706653|sp|P51913|ENOA_CHICK_3:426 blasting: T0111 gi|3023710|sp|Q27877|ENO_SCHMA_3:427 blasting: T0111 gi|3023685|sp|Q43321|ENO_ALNGL_2:430 blasting: T0111 gi|1942652|pdb|1ONE|A_2:427 blasting: T0111 gi|1169532|sp|P43806|ENO_HAEIN_2:436 blasting: T0111 gi|1706654|sp|P07322|ENOB_CHICK_3:427 blasting: T0111 gi|3023714|sp|Q43130|ENO_MESCR_5:434 blasting: T0111 gi|2127611|pir||S62841_4:145 blasting: T0111 gi|3023683|sp|Q12560|ENO_ASPOR_3:431 blasting: T0111 gi|1311141|pdb|1PDZ|_3:428 blasting: T0111 gi|1352367|sp|P47647|ENO_MYCGE_10:444 blasting: T0111 gi|1363309|pir||JC1039_3:425 blasting: T0111 gi|4033380|sp|P74934|ENO_TREPA_2:425 blasting: T0111 gi|2494353|sp|Q60173|ENO_METJA_10:421 blasting: T0111 gi|3023705|sp|P77972|ENO_SYNY3_9:421 blasting: T0111 gi|2494352|sp|P75189|ENO_MYCPN_11:454 blasting: T0111 gi|1839190|gb|AAC47634.1|_2:168 blasting: T0111 gi|1839192|gb|AAC47635.1|_3:170 blasting: T0111 gi|1839194|gb|AAC47636.1|_3:160 blasting: T0111 gi|1839196|gb|AAC47637.1|_5:170 blasting: T0111 gi|1839198|gb|AAC47638.1|_4:173 blasting: T0111 gi|1839200|gb|AAC47639.1|_3:163 blasting: T0111 gi|1839202|gb|AAC47640.1|_3:168 blasting: T0111 gi|1839204|gb|AAC47641.1|_3:169 blasting: T0111 gi|1839206|gb|AAC47642.1|_4:170 blasting: T0111 gi|1839208|gb|AAC47643.1|_3:169 blasting: T0111 gi|1839210|gb|AAC47644.1|_3:168 blasting: T0111 gi|1839212|gb|AAC47645.1|_2:164 blasting: T0111 gi|1839214|gb|AAC47646.1|_3:170 blasting: T0111 gi|3023706|sp|P96377|ENO_MYCTU_4:417 blasting: T0111 gi|3023702|sp|O02654|ENO_LOLPE_3:428 blasting: T0111 gi|1916933|gb|AAC47733.1|_3:103 blasting: T0111 gi|6015095|sp|O32513|ENO_DESVM_2:165 blasting: T0111 gi|2281464|gb|AAC46289.1|_5:424 blasting: T0111 gi|2506387|sp|P48285|ENO_HELPY_11:424 blasting: T0111 gi|2326832|emb|CAA99728.1|_1:254 blasting: T0111 gi|2494354|sp|Q27527|ENO_CAEEL_3:426 blasting: T0111 gi|6015096|sp|O26149|ENO_METTH_11:406 blasting: T0111 gi|6166147|sp|P37869|ENO_BACSU_4:421 blasting: T0111 gi|6015093|sp|O30885|ENO_CAMFE_4:207 blasting: T0111 gi|6015092|sp|O29133|ENO_ARCFU_28:358 blasting: T0111 gi|6015092|sp|O29133|ENO_ARCFU_2:165 blasting: T0111 gi|2655161|gb|AAB87890.1|_1:413 blasting: T0111 gi|2655163|gb|AAB87891.1|_1:413 blasting: T0111 gi|2661039|gb|AAB88178.1|_1:328 blasting: T0111 gi|3913583|sp|O51312|ENO_BORBU_5:424 blasting: T0111 gi|6015090|sp|O57391|ENOG_CHICK_3:425 blasting: T0111 gi|2851394|sp|P25704|ENOB_RABIT_5:427 blasting: T0111 gi|6015100|sp|O52191|ENO_STRTR_5:413 blasting: T0111 gi|6015091|sp|O66778|ENO_AQUAE_2:420 blasting: T0111 gi|3023703|sp|P56252|ENO_HOMGA_2:427 blasting: T0111 gi|7465695|pir||T33721_4:369 blasting: T0111 gi|6015099|sp|O69174|ENO_STAAU_4:427 blasting: T0111 gi|7519220|pir||F71042_2:133 blasting: T0111 gi|7519220|pir||F71042_239:333 blasting: T0111 gi|6015098|sp|O59605|ENO_PYRHO_6:421 blasting: T0111 gi|3282243|gb|AAC39935.1|_1:261 blasting: T0111 gi|6225296|sp|O84591|ENO_CHLTR_6:413 blasting: T0111 gi|3367647|emb|CAA76735.1|_1:427 blasting: T0111 gi|6015097|sp|O85348|ENO_NITEU_2:420 blasting: T0111 gi|3549093|gb|AAC34554.1|_2:50 blasting: T0111 gi|3549097|gb|AAC34556.1|_2:50 blasting: T0111 gi|3549103|gb|AAC34559.1|_2:50 blasting: T0111 gi|3885968|gb|AAC78141.1|_3:429 blasting: T0111 gi|3980380|gb|AAC95183.1|_45:468 blasting: T0111 gi|4106354|gb|AAD02812.1|_3:433 blasting: T0111 gi|7436886|pir||H71967_11:424 blasting: T0111 gi|6225295|sp|Q9Z7A6|ENO_CHLPN_6:413 blasting: T0111 gi|4416379|gb|AAD20342.1|_14:373 blasting: T0111 gi|4416381|gb|AAD20343.1|_1:373 blasting: T0111 gi|4416383|gb|AAD20344.1|_1:373 blasting: T0111 gi|4416385|gb|AAD20345.1|_1:373 blasting: T0111 gi|4416387|gb|AAD20346.1|_1:373 blasting: T0111 gi|4589933|dbj|BAA76924.1|_5:440 blasting: T0111 gi|7490532|pir||T39737_3:427 blasting: T0111 gi|4927286|gb|AAD33073.1|AF149256_1_3:426 blasting: T0111 gi|4981411|gb|AAD35958.1|AE001753_14_2:420 blasting: T0111 gi|7436885|pir||A72477_8:427 blasting: T0111 gi|5263171|dbj|BAA81815.1|_2:427 blasting: T0111 gi|5305421|gb|AAD41643.1|AF072586_1_3:426 blasting: T0111 gi|5305423|gb|AAD41644.1|AF072587_1_3:426 blasting: T0111 gi|5305425|gb|AAD41645.1|AF072588_1_3:426 blasting: T0111 gi|5305427|gb|AAD41646.1|AF072589_1_3:426 blasting: T0111 gi|7514830|pir||C75172_2:243 blasting: T0111 gi|7436884|pir||H75022_8:423 blasting: T0111 gi|5566196|gb|AAD45327.1|AF159517_1_1:352 blasting: T0111 gi|5566197|gb|AAD45328.1|AF159518_1_1:353 blasting: T0111 gi|5566198|gb|AAD45329.1|AF159519_1_1:353 blasting: T0111 gi|5566199|gb|AAD45330.1|AF159520_1_11:328 blasting: T0111 gi|5566200|gb|AAD45331.1|AF159521_1_11:329 blasting: T0111 gi|5566201|gb|AAD45332.1|AF159522_1_13:329 blasting: T0111 gi|5566202|gb|AAD45333.1|AF159523_1_11:329 blasting: T0111 gi|5566203|gb|AAD45334.1|AF159524_1_13:330 blasting: T0111 gi|5566204|gb|AAD45335.1|AF159525_1_13:330 blasting: T0111 gi|5566205|gb|AAD45336.1|AF159526_1_15:330 blasting: T0111 gi|5566206|gb|AAD45337.1|AF159527_1_15:330 blasting: T0111 gi|5566207|gb|AAD45338.1|AF159528_1_13:330 blasting: T0111 gi|5566208|gb|AAD45339.1|AF159529_1_1:370 blasting: T0111 gi|5566209|gb|AAD45340.1|AF159530_1_2:347 blasting: T0111 gi|5566210|gb|AAD45341.1|AF159531_1_2:347 blasting: T0111 gi|5669648|gb|AAD46409.1|AF096253_1_3:71 blasting: T0111 gi|5764087|gb|AAD51128.1|AF051910_1_3:437 blasting: T0111 gi|6015094|sp|P42040|ENO_CLAHE_3:431 blasting: T0111 gi|6226608|sp|P42848|ENO_THEMA_4:422 blasting: T0111 gi|7471868|pir||D75251_3:422 blasting: T0111 gi|6469814|gb|AAF13454.1|AF205070_1_2:436 blasting: T0111 gi|6624229|dbj|BAA88479.1|_1:387 blasting: T0111 gi|6624235|dbj|BAA88482.1|_1:387 blasting: T0111 gi|6624237|dbj|BAA88483.1|_1:386 blasting: T0111 gi|6899148|gb|AAF30591.1|AE002118_1_2:438 blasting: T0111 gi|6969088|emb|CAB73659.1|_11:413 blasting: T0111 gi|6996529|emb|CAB75428.1|_4:434 blasting: T0111 gi|7109469|gb|AAF36733.1|_50:465 blasting: T0111 gi|7189985|gb|AAF38843.1|_6:413 blasting: T0111 gi|7190904|gb|AAF39672.1|_6:415 blasting: T0111 gi|7226525|gb|AAF41661.1|_2:417 blasting: T0111 gi|7296048|gb|AAF51344.1|_3:433 blasting: T0111 gi|7331113|gb|AAF60279.1|_1:102 blasting: T0111 gi|7380143|emb|CAB84728.1|_2:417 blasting: T0111 gi|7706790|gb|AAB35826.2|_1:180 blasting: T0111 gi|8072215|gb|AAF71925.1|AF260259_1_5:427 blasting: T0111 gi|8101730|gb|AAF72634.1|AF258663_1_1:325 blasting: T0111 gi|8101732|gb|AAF72635.1|AF258664_1_1:159 blasting: T0111 gi|8101734|gb|AAF72636.1|AF258665_1_11:317 blasting: T0111 gi|8101736|gb|AAF72637.1|AF258666_1_1:251 blasting: T0111 gi|8101738|gb|AAF72638.1|AF258667_1_1:159 blasting: T0111 gi|8101740|gb|AAF72639.1|AF258668_1_12:385 blasting: T0111 gi|8101742|gb|AAF72640.1|AF258669_1_11:384 blasting: T0111 gi|8101744|gb|AAF72641.1|AF258670_1_11:383 blasting: T0111 gi|8101746|gb|AAF72642.1|AF258671_1_11:217 blasting: T0111 gi|8101748|gb|AAF72643.1|AF258672_1_1:190 blasting: T0111 gi|8101750|gb|AAF72644.1|AF258673_1_1:162 blasting: T0111 gi|8132069|gb|AAF73201.1|AF152348_1_3:423 blasting: T0111 gi|8388689|emb|CAB94039.1|_3:423 blasting: T0111 gi|8546856|emb|CAB94588.1|_5:147 blasting: T0111 gi|8575807|gb|AAF78088.1|AF274056_1_7:137 blasting: T0111 gi|8670811|emb|CAB94910.1|_2:424 blasting: T0111 gi|8919600|emb|CAB96125.1|_3:424 blasting: T0111 gi|8919602|emb|CAB96126.1|_56:485 blasting: T0111 gi|8919731|emb|CAB96173.1|_4:434 blasting: make[1]: Leaving directory `/auto/projects/compbio/experiments/casp4/t111' make -k T0111.t2k.a2m.gz \ T0111.t2k.pa \ T0111.t2k.pa.html \ T0111.t2k.2d \ T0111.t2k.tree \ T0111.t2k_sorted.pa \ T0111.t2k.tree.ps \ T0111.t2k.tree-unroot.ps make[1]: Entering directory `/auto/projects/compbio/experiments/casp4/t111' /projects/compbio/experiments/models.97/scripts2k/target2k -out T0111.t2k \ -seed T0111.seq \ -all @@@@ chgrp protein /projects/compbio/tmp/target2k-eclipse-32040 @@@@ cp /projects/compbio/experiments/casp4/t111/T0111.seq m0.a2m @@@@ checkseq foo -alphabet protein -db m0.a2m > init.check SAM: checkseq v3.2 (June, 2000) compiled 07/06/00_15:43:49 # About to count sequences in /projects/compbio/data/nrp/nr /projects/compbio/experiments/models.97/scripts2k/target2k: E-value thresholds used are prefilter: 0.01, actual: 0.0001 prefilter: 1, actual: 0.0002 prefilter: 10, actual: 0.001 prefilter: 400, actual: 0.005 /projects/compbio/experiments/models.97/scripts2k/target2k: aweight_bits are 0.8, 0.7, 0.6, 0.5 /projects/compbio/experiments/models.97/scripts2k/target2k: db_size= 517398 reverse_diff= 4 /projects/compbio/experiments/models.97/scripts2k/target2k: blast_max_report= 20000 /projects/compbio/experiments/models.97/scripts2k/target2k: db=/projects/compbio/data/nrp/nr /projects/compbio/experiments/models.97/scripts2k/target2k: aweight_method=1 aweight_exponent=10 /projects/compbio/experiments/models.97/scripts2k/target2k: force_seed=1 constraints=1 /projects/compbio/experiments/models.97/scripts2k/target2k: jump_in=0.2 jump_out=1 fimstrength=1 fimtrans=-1 @@@@ blast-prefilter -out prefilter -seed m0.a2m -prefilter_thresholds 0.01,1,10,400 -db /projects/compbio/data/nrp/nr -blast_max_report 20000 @@@@ chgrp protein /projects/compbio/tmp/blast-prefilter-eclipse-5538 /projects/compbio/experiments/models.97/scripts2k/blast-prefilter: E-value thresholds used are For /projects/compbio/tmp/target2k-eclipse-32040/prefilter_1.fa, 0.01 For /projects/compbio/tmp/target2k-eclipse-32040/prefilter_2.fa, 1 For /projects/compbio/tmp/target2k-eclipse-32040/prefilter_3.fa, 10 For /projects/compbio/tmp/target2k-eclipse-32040/prefilter_4.fa, 400 /projects/compbio/experiments/models.97/scripts2k/blast-prefilter: db=/projects/compbio/data/nrp/nr @@@@ uniqueseq init -alignfile /projects/compbio/tmp/target2k-eclipse-32040/m0.a2m -a protein -a2mdots 0 SAM: uniqueseq v3.2 (June, 2000) compiled 07/06/00_15:43:59 Reading alignment file /projects/compbio/tmp/target2k-eclipse-32040/m0.a2m (1 sequences, 431 columns) as A2M alignment. Writing sequence output to init.a2m. No sequences have been dropped. @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 1.fasta E=400 V=20000 B=0 -gi > 1.fasta-blast.out Searched 517398 sequences # parsing wu-blastp output @@@@ rm -f 1.fasta < /dev/null @@@@ rm -f 1.fasta-blast.out < /dev/null # Extracting hits in FASTA format from /projects/compbio/data/nrp/nr @@@@ rm -rf /projects/compbio/tmp/blast-prefilter-eclipse-5538 < /dev/null @@@@ modelfromalign unused -alignfile m0.a2m \ -constraints_from_align 1 -constraints_out m0.cst SAM: modelfromalign v3.2 (June, 2000) compiled 07/06/00_15:43:15 Reading alignment file m0.a2m (1 sequences, 431 columns) as A2M alignment. # About to count sequences in m0.a2m # About to count sequences in prefilter_1.fa @@@@ modelfromalign tmp_1-a -alignfile m0.a2m \ -insert /projects/compbio/lib/gap1.5.regularizer \ -aweight_bits 0.8\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 -constraints m0.cst -constraints_out tmp_1-a.cst Reading parameter file /projects/compbio/lib/gap1.5.regularizer /projects/compbio/lib/gap1.5.regularizer(1): Reading REGULARIZER: gap1.5. Weak regularizer, gaps average 1.5, matches average 10 SAM: modelfromalign v3.2 (June, 2000) compiled 07/06/00_15:43:15 Reading alignment file m0.a2m (1 sequences, 431 columns) as A2M alignment. @@@@ hmmscore tmp_1-a -i tmp_1-a.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 517398 \ -simple_threshold -26.3669080550283 -Emax 0.0001 \ -adpstyle 1 \ -align_short 0 -mdEmax 0.0001\ -select_score 4 \ -select_seq 4 \ -select_mdalign 4 -select_md 4 -Motifcutoff 0.0464037122969838 -db prefilter_1.fa -constraints tmp_1-a.cst -constraints_out tmp_1-a-md.cst Reading parameter file tmp_1-a.mod tmp_1-a.mod(21): Reading MODEL -- Model from alignment file m0.a2m SAM: hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -279.541321 Database has 205 sequences with 74589 residues. @@@@ sortseq tmp_1-a-sort -alignfile tmp_1-a.mult \ -NLLfile tmp_1-a.mstat -a2mdots 0 SAM: sortseq v3.2 (June, 2000) compiled 07/06/00_15:43:43 Reading alignment file tmp_1-a.mult (203 sequences, 431 columns) as A2M alignment. Reading scores from file tmp_1-a.mstat Writing sequence output to tmp_1-a-sort.a2m. @@@@ cat m0.a2m tmp_1-a-sort.a2m > tmp_1-a.train.seq @@@@ cat m0.cst tmp_1-a-md.cst > tmp_1-a.train.cst # About to count sequences in tmp_1-a.train.seq # num_seqs=204 nll_thresh=-22.3669080550283 frac_id=0.799670535247749 @@@@ uniqueseq thinned_tmp -alignfile tmp_1-a.train.seq -a protein \ -percent_id 0.799670535247749 -a2mdots 0 SAM: uniqueseq v3.2 (June, 2000) compiled 07/06/00_15:43:59 Reading alignment file tmp_1-a.train.seq (204 sequences, 431 columns) as A2M alignment. Writing sequence output to thinned_tmp.a2m. Dropping 5 (of 204) duplicate sequences with differing IDs Dropping 116 (of 204) sequences with > 80.0% id 83 sequences left after dropping 121 of 204 sequences. @@@@ modelfromalign junk_for_weights \ -alignfile tmp_1-a.train.seq \ -aweight_bits 0.8\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 SAM: modelfromalign v3.2 (June, 2000) compiled 07/06/00_15:43:15 Reading alignment file tmp_1-a.train.seq (83 sequences, 431 columns) as A2M alignment. @@@@ buildmodel tmp_1-b -insert tmp_1-a.mod\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -modellength 0 \ -internal_weight 0 \ -anneal_length 2 \ -many_files 1 \ -Nseq 20000\ -nsurgery 0 \ -fracinsert 0.2 \ -cutinsert 0.25 -cutmatch 0.2 -initial_noise 0.0001 -anneal_noise 0.000001 \ -internal_weight 0 \ -train tmp_1-a.train.seq \ -nmodels 1\ -insert /projects/compbio/lib/gap1.5.regularizer -sequence_weights tmp_1-a.w -constraints tmp_1-a.train.cst Reading parameter file tmp_1-a.mod tmp_1-a.mod(21): Reading MODEL -- Model from alignment file m0.a2m Command line option(48): internal_weight has already been set. Using 0. Reading parameter file /projects/compbio/lib/gap1.5.regularizer /projects/compbio/lib/gap1.5.regularizer(1): Reading REGULARIZER: gap1.5. Weak regularizer, gaps average 1.5, matches average 10 SAM: buildmodel v3.2 (June, 2000) compiled 07/07/00_22:42:24 -1208.96 264.08 -375.03 241.17 11 0 432 @@@@ hmmscore tmp_1-b -i tmp_1-b.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 517398 \ -db m0.a2m -db tmp_1-a.sel \ -select_score 4 \ -select_seq 4 \ -simple_threshold -26.3669080550283 -Emax 0.0001 \ -select_mdalign 4 -select_md 4 \ -adpstyle 1 \ -Motifcutoff 0.0464037122969838 \ -align_short 5 -mdEmax 0.0001 -constraints tmp_1-a.train.cst -constraints_out /projects/compbio/experiments/casp4/t111/T0111.t2k_1.cst Reading parameter file tmp_1-b.mod tmp_1-b.mod(18): Reading MODEL -- Final model for run tmp_1-b SAM: hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -430.182220 Database has 204 sequences with 74889 residues. @@@@ cp -f tmp_1-b.mult /projects/compbio/experiments/casp4/t111/T0111.t2k_1.a2m # About to count sequences in prefilter_2.fa @@@@ modelfromalign tmp_2-a -alignfile /projects/compbio/experiments/casp4/t111/T0111.t2k_1.a2m \ -insert /projects/compbio/lib/stiff-gap5.regularizer \ -aweight_bits 0.7\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 -constraints /projects/compbio/experiments/casp4/t111/T0111.t2k_1.cst -constraints_out tmp_2-a.cst Reading parameter file /projects/compbio/lib/stiff-gap5.regularizer /projects/compbio/lib/stiff-gap5.regularizer(1): Reading REGULARIZER: gap5. stiff regularizer, gaps averge 5, matches average 10 SAM: modelfromalign v3.2 (June, 2000) compiled 07/06/00_15:43:15 Reading alignment file /projects/compbio/experiments/casp4/t111/T0111.t2k_1.a2m (205 sequences, 431 columns) as A2M alignment. @@@@ hmmscore tmp_2-a -i tmp_2-a.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 517398 \ -simple_threshold -25.673760874275 -Emax 0.0002 \ -adpstyle 1 \ -align_short 0 -mdEmax 0.0002\ -select_score 4 \ -select_seq 4 \ -select_mdalign 4 -select_md 4 -Motifcutoff 0.0464037122969838 -db prefilter_2.fa -constraints tmp_2-a.cst -constraints_out tmp_2-a-md.cst Reading parameter file tmp_2-a.mod tmp_2-a.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/experiments/casp4/t111/T0111.t2k_1.a2m SAM: hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -383.772430 Database has 223 sequences with 77023 residues. @@@@ sortseq tmp_2-a-sort -alignfile tmp_2-a.mult \ -NLLfile tmp_2-a.mstat -a2mdots 0 SAM: sortseq v3.2 (June, 2000) compiled 07/06/00_15:43:43 Reading alignment file tmp_2-a.mult (210 sequences, 431 columns) as A2M alignment. Reading scores from file tmp_2-a.mstat Writing sequence output to tmp_2-a-sort.a2m. @@@@ cat m0.a2m tmp_2-a-sort.a2m > tmp_2-a.train.seq @@@@ cat m0.cst tmp_2-a-md.cst > tmp_2-a.train.cst # About to count sequences in tmp_2-a.train.seq # num_seqs=211 nll_thresh=-21.673760874275 frac_id=0.789096986741853 @@@@ uniqueseq thinned_tmp -alignfile tmp_2-a.train.seq -a protein \ -percent_id 0.789096986741853 -a2mdots 0 SAM: uniqueseq v3.2 (June, 2000) compiled 07/06/00_15:43:59 Reading alignment file tmp_2-a.train.seq (211 sequences, 431 columns) as A2M alignment. Writing sequence output to thinned_tmp.a2m. Dropping 131 (of 211) sequences with > 78.9% id 80 sequences left after dropping 131 of 211 sequences. @@@@ modelfromalign junk_for_weights \ -alignfile tmp_2-a.train.seq \ -aweight_bits 0.7\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 SAM: modelfromalign v3.2 (June, 2000) compiled 07/06/00_15:43:15 Reading alignment file tmp_2-a.train.seq (80 sequences, 431 columns) as A2M alignment. @@@@ buildmodel tmp_2-b -insert tmp_2-a.mod\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -modellength 0 \ -internal_weight 0 \ -anneal_length 2 \ -many_files 1 \ -Nseq 20000\ -nsurgery 0 \ -fracinsert 0.2 \ -cutinsert 0.25 -cutmatch 0.2 -initial_noise 0.0001 -anneal_noise 0.000001 \ -internal_weight 0 \ -train tmp_2-a.train.seq \ -nmodels 1\ -insert /projects/compbio/lib/stiff-gap5.regularizer -sequence_weights tmp_2-a.w -constraints tmp_2-a.train.cst Reading parameter file tmp_2-a.mod tmp_2-a.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/experiments/casp4/t111/T0111.t2k_1.a2m Command line option(48): internal_weight has already been set. Using 0. Reading parameter file /projects/compbio/lib/stiff-gap5.regularizer /projects/compbio/lib/stiff-gap5.regularizer(1): Reading REGULARIZER: gap5. stiff regularizer, gaps averge 5, matches average 10 SAM: buildmodel v3.2 (June, 2000) compiled 07/07/00_22:42:24 -1209.44 50.74 -369.79 183.30 3 0 432 @@@@ hmmscore tmp_2-b -i tmp_2-b.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 517398 \ -db m0.a2m -db tmp_2-a.sel \ -select_score 4 \ -select_seq 4 \ -simple_threshold -25.673760874275 -Emax 0.0002 \ -select_mdalign 4 -select_md 4 \ -adpstyle 1 \ -Motifcutoff 0.0464037122969838 \ -align_short 5 -mdEmax 0.0002 -constraints tmp_2-a.train.cst -constraints_out /projects/compbio/experiments/casp4/t111/T0111.t2k_2.cst Reading parameter file tmp_2-b.mod tmp_2-b.mod(18): Reading MODEL -- Final model for run tmp_2-b SAM: hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -384.105469 Database has 212 sequences with 75503 residues. @@@@ cp -f tmp_2-b.mult /projects/compbio/experiments/casp4/t111/T0111.t2k_2.a2m # About to count sequences in prefilter_3.fa @@@@ modelfromalign tmp_3-a -alignfile /projects/compbio/experiments/casp4/t111/T0111.t2k_2.a2m \ -insert /projects/compbio/lib/stiff-gap5.regularizer \ -aweight_bits 0.6\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 -constraints /projects/compbio/experiments/casp4/t111/T0111.t2k_2.cst -constraints_out tmp_3-a.cst Reading parameter file /projects/compbio/lib/stiff-gap5.regularizer /projects/compbio/lib/stiff-gap5.regularizer(1): Reading REGULARIZER: gap5. stiff regularizer, gaps averge 5, matches average 10 SAM: modelfromalign v3.2 (June, 2000) compiled 07/06/00_15:43:15 Reading alignment file /projects/compbio/experiments/casp4/t111/T0111.t2k_2.a2m (210 sequences, 431 columns) as A2M alignment. @@@@ hmmscore tmp_3-a -i tmp_3-a.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 517398 \ -simple_threshold -24.0643229602947 -Emax 0.001 \ -adpstyle 1 \ -align_short 0 -mdEmax 0.001\ -select_score 4 \ -select_seq 4 \ -select_mdalign 4 -select_md 4 -Motifcutoff 0.0464037122969838 -db prefilter_3.fa -constraints tmp_3-a.cst -constraints_out tmp_3-a-md.cst Reading parameter file tmp_3-a.mod tmp_3-a.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/experiments/casp4/t111/T0111.t2k_2.a2m SAM: hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -325.640717 Database has 252 sequences with 84706 residues. @@@@ sortseq tmp_3-a-sort -alignfile tmp_3-a.mult \ -NLLfile tmp_3-a.mstat -a2mdots 0 SAM: sortseq v3.2 (June, 2000) compiled 07/06/00_15:43:43 Reading alignment file tmp_3-a.mult (211 sequences, 431 columns) as A2M alignment. Reading scores from file tmp_3-a.mstat Writing sequence output to tmp_3-a-sort.a2m. @@@@ cat m0.a2m tmp_3-a-sort.a2m > tmp_3-a.train.seq @@@@ cat m0.cst tmp_3-a-md.cst > tmp_3-a.train.cst # About to count sequences in tmp_3-a.train.seq # num_seqs=212 nll_thresh=-20.0643229602947 frac_id=0.776317377512405 @@@@ uniqueseq thinned_tmp -alignfile tmp_3-a.train.seq -a protein \ -percent_id 0.776317377512405 -a2mdots 0 SAM: uniqueseq v3.2 (June, 2000) compiled 07/06/00_15:43:59 Reading alignment file tmp_3-a.train.seq (212 sequences, 431 columns) as A2M alignment. Writing sequence output to thinned_tmp.a2m. Dropping 134 (of 212) sequences with > 77.6% id 78 sequences left after dropping 134 of 212 sequences. @@@@ modelfromalign junk_for_weights \ -alignfile tmp_3-a.train.seq \ -aweight_bits 0.6\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 SAM: modelfromalign v3.2 (June, 2000) compiled 07/06/00_15:43:15 Reading alignment file tmp_3-a.train.seq (78 sequences, 431 columns) as A2M alignment. @@@@ buildmodel tmp_3-b -insert tmp_3-a.mod\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -modellength 0 \ -internal_weight 0 \ -anneal_length 2 \ -many_files 1 \ -Nseq 20000\ -nsurgery 0 \ -fracinsert 0.2 \ -cutinsert 0.25 -cutmatch 0.2 -initial_noise 0.0001 -anneal_noise 0.000001 \ -internal_weight 0 \ -train tmp_3-a.train.seq \ -nmodels 1\ -insert /projects/compbio/lib/stiff-gap5.regularizer -sequence_weights tmp_3-a.w -constraints tmp_3-a.train.cst Reading parameter file tmp_3-a.mod tmp_3-a.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/experiments/casp4/t111/T0111.t2k_2.a2m Command line option(48): internal_weight has already been set. Using 0. Reading parameter file /projects/compbio/lib/stiff-gap5.regularizer /projects/compbio/lib/stiff-gap5.regularizer(1): Reading REGULARIZER: gap5. stiff regularizer, gaps averge 5, matches average 10 SAM: buildmodel v3.2 (June, 2000) compiled 07/07/00_22:42:24 -1209.94 45.81 -344.39 183.79 7 0 432 @@@@ hmmscore tmp_3-b -i tmp_3-b.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 517398 \ -db m0.a2m -db tmp_3-a.sel \ -select_score 4 \ -select_seq 4 \ -simple_threshold -24.0643229602947 -Emax 0.001 \ -select_mdalign 4 -select_md 4 \ -adpstyle 1 \ -Motifcutoff 0.0464037122969838 \ -align_short 5 -mdEmax 0.001 -constraints tmp_3-a.train.cst -constraints_out /projects/compbio/experiments/casp4/t111/T0111.t2k_3.cst Reading parameter file tmp_3-b.mod tmp_3-b.mod(18): Reading MODEL -- Final model for run tmp_3-b SAM: hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -364.931335 Database has 213 sequences with 75877 residues. @@@@ cp -f tmp_3-b.mult /projects/compbio/experiments/casp4/t111/T0111.t2k_3.a2m # About to count sequences in prefilter_4.fa @@@@ modelfromalign tmp_4-a -alignfile /projects/compbio/experiments/casp4/t111/T0111.t2k_3.a2m \ -insert /projects/compbio/lib/fssp-trained.regularizer \ -aweight_bits 0.5\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 -constraints /projects/compbio/experiments/casp4/t111/T0111.t2k_3.cst -constraints_out tmp_4-a.cst Reading parameter file /projects/compbio/lib/fssp-trained.regularizer /projects/compbio/lib/fssp-trained.regularizer(1): Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP SAM: modelfromalign v3.2 (June, 2000) compiled 07/06/00_15:43:15 Reading alignment file /projects/compbio/experiments/casp4/t111/T0111.t2k_3.a2m (211 sequences, 431 columns) as A2M alignment. @@@@ hmmscore tmp_4-a -i tmp_4-a.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 517398 \ -simple_threshold -22.4548850401296 -Emax 0.005 \ -adpstyle 1 \ -align_short 0 -mdEmax 0.005\ -select_score 4 \ -select_seq 4 \ -select_mdalign 4 -select_md 4 -Motifcutoff 0.0464037122969838 -db prefilter_4.fa -constraints tmp_4-a.cst -constraints_out tmp_4-a-md.cst Reading parameter file tmp_4-a.mod tmp_4-a.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/experiments/casp4/t111/T0111.t2k_3.a2m SAM: hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -111.499191 Database has 733 sequences with 218724 residues. @@@@ sortseq tmp_4-a-sort -alignfile tmp_4-a.mult \ -NLLfile tmp_4-a.mstat -a2mdots 0 SAM: sortseq v3.2 (June, 2000) compiled 07/06/00_15:43:43 Reading alignment file tmp_4-a.mult (211 sequences, 431 columns) as A2M alignment. Reading scores from file tmp_4-a.mstat Writing sequence output to tmp_4-a-sort.a2m. @@@@ cat m0.a2m tmp_4-a-sort.a2m > tmp_4-a.train.seq @@@@ cat m0.cst tmp_4-a-md.cst > tmp_4-a.train.cst # About to count sequences in tmp_4-a.train.seq # num_seqs=212 nll_thresh=-18.4548850401296 frac_id=0.76388201924012 @@@@ uniqueseq thinned_tmp -alignfile tmp_4-a.train.seq -a protein \ -percent_id 0.76388201924012 -a2mdots 0 SAM: uniqueseq v3.2 (June, 2000) compiled 07/06/00_15:43:59 Reading alignment file tmp_4-a.train.seq (212 sequences, 431 columns) as A2M alignment. Writing sequence output to thinned_tmp.a2m. Dropping 137 (of 212) sequences with > 76.4% id 75 sequences left after dropping 137 of 212 sequences. @@@@ modelfromalign junk_for_weights \ -alignfile tmp_4-a.train.seq \ -aweight_bits 0.5\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 SAM: modelfromalign v3.2 (June, 2000) compiled 07/06/00_15:43:15 Reading alignment file tmp_4-a.train.seq (75 sequences, 431 columns) as A2M alignment. @@@@ buildmodel tmp_4-b -insert tmp_4-a.mod\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -modellength 0 \ -internal_weight 0 \ -anneal_length 2 \ -many_files 1 \ -Nseq 20000\ -nsurgery 0 \ -fracinsert 0.2 \ -cutinsert 0.25 -cutmatch 0.2 -initial_noise 0.0001 -anneal_noise 0.000001 \ -internal_weight 0 \ -train tmp_4-a.train.seq \ -nmodels 1\ -insert /projects/compbio/lib/fssp-trained.regularizer -sequence_weights tmp_4-a.w -constraints tmp_4-a.train.cst Reading parameter file tmp_4-a.mod tmp_4-a.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/experiments/casp4/t111/T0111.t2k_3.a2m Command line option(48): internal_weight has already been set. Using 0. Reading parameter file /projects/compbio/lib/fssp-trained.regularizer /projects/compbio/lib/fssp-trained.regularizer(1): Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP SAM: buildmodel v3.2 (June, 2000) compiled 07/07/00_22:42:24 -1210.13 27.35 -338.36 172.14 6 0 432 @@@@ hmmscore tmp_4-b -i tmp_4-b.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 517398 \ -db m0.a2m -db tmp_4-a.sel \ -select_score 4 \ -select_seq 4 \ -simple_threshold -22.4548850401296 -Emax 0.005 \ -select_mdalign 4 -select_md 4 \ -adpstyle 1 \ -Motifcutoff 0.0464037122969838 \ -align_short 5 -mdEmax 0.005 -constraints tmp_4-a.train.cst -constraints_out /projects/compbio/experiments/casp4/t111/T0111.t2k_4.cst Reading parameter file tmp_4-b.mod tmp_4-b.mod(18): Reading MODEL -- Final model for run tmp_4-b SAM: hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -345.931549 Database has 213 sequences with 76240 residues. @@@@ cp -f tmp_4-b.mult /projects/compbio/experiments/casp4/t111/T0111.t2k_4.a2m @@@@ modelfromalign tmp_5-a -alignfile /projects/compbio/experiments/casp4/t111/T0111.t2k_4.a2m \ -insert /projects/compbio/lib/fssp-trained.regularizer \ -aweight_bits 0.5\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 -constraints /projects/compbio/experiments/casp4/t111/T0111.t2k_4.cst -constraints_out tmp_5-a.cst Reading parameter file /projects/compbio/lib/fssp-trained.regularizer /projects/compbio/lib/fssp-trained.regularizer(1): Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP SAM: modelfromalign v3.2 (June, 2000) compiled 07/06/00_15:43:15 Reading alignment file /projects/compbio/experiments/casp4/t111/T0111.t2k_4.a2m (213 sequences, 431 columns) as A2M alignment. @@@@ hmmscore tmp_5-a -i tmp_5-a.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 517398 \ -simple_threshold -22.4548850401296 -Emax 0.005 \ -adpstyle 5 \ -align_short 0 -mdEmax 0.005\ -select_score 4 \ -select_seq 4 \ -select_mdalign 4 -select_md 4 -Motifcutoff 0.0464037122969838 -db prefilter_4.fa -constraints tmp_5-a.cst -constraints_out tmp_5-a-md.cst Reading parameter file tmp_5-a.mod tmp_5-a.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/experiments/casp4/t111/T0111.t2k_4.a2m SAM: hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -111.628922 Database has 733 sequences with 218724 residues. @@@@ sortseq tmp_5-a-sort -alignfile tmp_5-a.mult \ -NLLfile tmp_5-a.mstat -a2mdots 0 SAM: sortseq v3.2 (June, 2000) compiled 07/06/00_15:43:43 Reading alignment file tmp_5-a.mult (197 sequences, 431 columns) as A2M alignment. Reading scores from file tmp_5-a.mstat Writing sequence output to tmp_5-a-sort.a2m. @@@@ cat m0.a2m tmp_5-a-sort.a2m > tmp_5-a.train.seq @@@@ cat m0.cst tmp_5-a-md.cst > tmp_5-a.train.cst @@@@ cp tmp_5-a.train.seq /projects/compbio/experiments/casp4/t111/T0111.t2k.a2m @@@@ cp tmp_5-a.train.cst /projects/compbio/experiments/casp4/t111/T0111.t2k.cst @@@@ rm -rf /projects/compbio/tmp/target2k-eclipse-32040 < /dev/null gzip -f T0111.t2k.a2m T0111.t2k_*.a2m prettyalign T0111.t2k.a2m.gz -m8 -i -n -L3333 > T0111.t2k.pa SAM: prettyalign v3.2 (June, 2000) compiled 07/10/00_09:40:44 gunzip -c T0111.t2k.a2m.gz > tmp.a2m a2m2html -a2m_in tmp.a2m -retrieve > T0111.t2k.pa.html SAM: /projects/compbio/bin/alpha/prettyalign v3.2 (June, 2000) compiled 07/10/00_09:40:44 rm tmp.a2m echo ReadNeuralNet /projects/compbio/usr/karplus/predict-2nd/testing/networks/overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net > tmp.script echo ReadA2M T0111.t2k.a2m.gz >> tmp.script echo PrintPrediction T0111.t2k.2d 3670-4530-6947 >> tmp.script echo PrintPredictionFasta T0111.t2k.2d.seq >> tmp.script echo PrintRDB T0111.t2k.2d.rdb >> tmp.script predict-2nd < tmp.script # command:# Neural network set to overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net # command:# Reading A2M format from T0111.t2k.a2m.gz # Using SequenceWeight EntropyWeight(1.4, 10) # Using regularizer /projects/compbio/lib/recode3.20comp for sequence weight regularizer. # T0111.t2k.a2m with 198 sequences, total weight= 15.5258 avg weight= 0.0784132 30 iterations Regularizing alignment for T0111.t2k.a2m.gz # After reading T0111.t2k.a2m.gz, have 431 columns in 1 chains # command:# Initializing Gain for FinalLayer # Initializing Gain for ordering_layer # Initializing Gain for SecondLayer # Initializing Gain for FirstLayer # Network initialization done # Printing prediction to T0111.t2k.2d # command:# Network initialization done # Printing prediction in FASTA format to T0111.t2k.2d.seq # command:# Network initialization done # Printing prediction to T0111.t2k.2d.rdb # command:rm tmp.script gunzip -f T0111.t2k.a2m.gz /projects/compbio/usr/karplus/src/phytree/phytree -o -i -r flat T0111.t2k T0111.t2k.a2m /projects/compbio/lib/recode2.20comp Prior library /projects/compbio/lib/recode2.20comp read. Reading alignment file T0111.t2k.a2m (198 sequences) as A2M alignment. Alignment T0111.t2k.a2m read. Adding sequences:0 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 One dot for every 10 merges: .................... Merges done. CPU = user 0: 4:36 system 0: 0: 0 gzip -f T0111.t2k.a2m gzip -f T0111.t2k_sorted.a2m rm T0111.t2k.phytrace T0111.t2k.tree_weight prettyalign T0111.t2k_sorted.a2m.gz -m8 -i -n -L3333 > T0111.t2k_sorted.pa SAM: prettyalign v3.2 (June, 2000) compiled 07/10/00_09:40:44 /projects/compbio/usr/karplus/src/phytree/dg T0111.t2k.tree /projects/compbio/usr/karplus/src/phytree/dtree T0111.t2k.tree make[1]: Leaving directory `/auto/projects/compbio/experiments/casp4/t111' /projects/compbio/experiments/models.97/scripts99/score-target -alignment T0111.t2k.a2m.gz -build w0.5 \ -db /projects/compbio/data/pdb/all-protein \ -Emax 40.0 \ -viterbi 0 -sw_score 2 \ -output T0111.t2k-w0.5-pdb.rdb PATH=.:/projects/compbio/experiments/models.97/scripts99:/projects/compbio/bin:/projects/compbio/bin/alpha:/projects/compbio/bin/hmmscripts:/projects/compbio/bin/scripts:/sbin:/usr/sbin:/bin:/usr/bin:/usr/local/gnu/bin:/usr/local/share/request/bin:/usr/local/bin @@@@ mkdir /projects/compbio/tmp/score-target-21646 @@@@ mkdir /projects/compbio/tmp/score-target-21646/for-scorescript @@@@ /projects/compbio/experiments/models.97/scripts99/score-mods-vs-seqs.pl -root_tmp /projects/compbio/tmp/score-target-21646/for-scorescript -a2msfile /projects/compbio/tmp/score-target-21646/score-target.a2m \ -buildscript /projects/compbio/bin/scripts/w0.5 -seqfile /projects/compbio/data/pdb/all-protein -Emax 40.0 -viterbi 0 \ -sw_score 2 -output /projects/compbio/tmp/score-target-21646/score-target.op @@@@ chgrp protein /projects/compbio/tmp/score-target-21646/for-scorescript/split-tmp @@@@ chgrp protein /projects/compbio/tmp/score-target-21646/for-scorescript/split-tmp @@@@ /projects/compbio/bin/scripts/w0.5 /projects/compbio/experiments/casp4/t111/T0111.t2k.a2m.gz /projects/compbio/tmp/score-target-21646/for-scorescript/split-tmp/eclipse-19554/T0111.t2k.mod Reading /projects/compbio/bin/scripts/sam-t99.conf @@@@ chgrp protein /projects/compbio/tmp/tmp-build-weighted-model-eclipse-23144 @@@@ uniqueseq /projects/compbio/tmp/tmp-build-weighted-model-eclipse-23144/tmp -alignfile /projects/compbio/experiments/casp4/t111/T0111.t2k.a2m.gz \ -a protein -percent_id 0.8 SAM: uniqueseq v3.2 (June, 2000) compiled 07/06/00_15:43:59 Reading alignment file /projects/compbio/experiments/casp4/t111/T0111.t2k.a2m.gz (198 sequences, 431 columns) as A2M alignment. Writing sequence output to /projects/compbio/tmp/tmp-build-weighted-model-eclipse-23144/tmp.a2m. Dropping 121 (of 198) sequences with > 80.0% id 77 sequences left after dropping 121 of 198 sequences. @@@@ modelfromalign /projects/compbio/tmp/tmp-build-weighted-model-eclipse-23144/tmp -alignfile /projects/compbio/tmp/tmp-build-weighted-model-eclipse-23144/tmp.a2m \ -insert /projects/compbio/lib/fssp-trained.regularizer \ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -prior_library /projects/compbio/lib/recode3.20comp \ -binary_output 1 -a protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10 Reading parameter file /projects/compbio/lib/fssp-trained.regularizer /projects/compbio/lib/fssp-trained.regularizer(1): Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP SAM: modelfromalign v3.2 (June, 2000) compiled 07/06/00_15:43:15 Reading alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-23144/tmp.a2m (77 sequences, 431 columns) as A2M alignment. @@@@ cp -f /projects/compbio/tmp/tmp-build-weighted-model-eclipse-23144/tmp.mod /projects/compbio/tmp/score-target-21646/for-scorescript/split-tmp/eclipse-19554/T0111.t2k.mod Reading /projects/compbio/bin/scripts/sam-t99.conf @@@@ hmmscore /projects/compbio/tmp/score-target-21646/for-scorescript/split-tmp/eclipse-19554/tmp19554 -i /projects/compbio/tmp/score-target-21646/for-scorescript/split-tmp/eclipse-19554/T0111.t2k.mod -db /projects/compbio/data/pdb/all-protein -SW_score 2 -viterbi 0 -select_score 4 -Emax 40.0 Reading parameter file /projects/compbio/tmp/score-target-21646/for-scorescript/split-tmp/eclipse-19554/T0111.t2k.mod /projects/compbio/tmp/score-target-21646/for-scorescript/split-tmp/eclipse-19554/T0111.t2k.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-23144/tmp.a2m SAM: hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) ....................... Average NLL-Simple NULL score: -11.325201 Database has 22382 sequences with 4866807 residues. @@@@ mv /projects/compbio/tmp/score-target-21646/for-scorescript/split-tmp/eclipse-19554/op_temp19554 /projects/compbio/tmp/score-target-21646/score-target.op @@@@ rsh beta rm -rf /projects/compbio/tmp/score-target-21646/for-scorescript/split-tmp/eclipse-19554 < /dev/null @@@@ rm -rf /projects/compbio/tmp/score-target-21646 /projects/compbio/bin/scripts/score-lib-t99 \ -targetseq T0111.seq \ -db "PDB and SCOP domains" \ -evalue 40.0 \ -hitsout T0111-t99.rdb Process ID: 16249 Command line args: targetseq: T0111.seq targeta2m: hitsoutfile: T0111-t99.rdb evalue: 40.0 db_option_str: PDB and SCOP domains db_ids_file: /projects/compbio/experiments/models.97/indexes/t99.ids db_seqfiles_list_ref: /projects/compbio/data/pdb/all-protein:/projects/compbio/experiments/test-set/fold-recognition-test/chothia-test/domains/domains.seqs db_aligndirs_list_ref: /projects/compbio/experiments/models.97/pdb:/projects/compbio4/experiments/models.97/domains entering get_template_model_for_db_search: template_id: 119l id: 119l alignment found: /projects/compbio/experiments/models.97/pdb/11/119l/nostruct-align/119l.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/11/119l/nostruct-align/119l.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/11/119l/nostruct-align/119l.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file ./tmp/tmp-build-weighted-model-titanic-28907/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.888794 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 12asA id: 12asA alignment found: /projects/compbio/experiments/models.97/pdb/12/12asA/nostruct-align/12asA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/12/12asA/nostruct-align/12asA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/12/12asA/nostruct-align/12asA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1277/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.053833 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 153l id: 153l alignment found: /projects/compbio/experiments/models.97/pdb/15/153l/nostruct-align/153l.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/15/153l/nostruct-align/153l.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/15/153l/nostruct-align/153l.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32612/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.856934 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 16pk id: 16pk alignment found: /projects/compbio/experiments/models.97/pdb/16/16pk/nostruct-align/16pk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/16/16pk/nostruct-align/16pk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/16/16pk/nostruct-align/16pk.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29881/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.824829 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 16vpA id: 16vpA alignment found: /projects/compbio/experiments/models.97/pdb/16/16vpA/nostruct-align/16vpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/16/16vpA/nostruct-align/16vpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/16/16vpA/nostruct-align/16vpA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15590/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.665894 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1914 id: 1914 alignment found: /projects/compbio/experiments/models.97/pdb/19/1914/nostruct-align/1914.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/19/1914/nostruct-align/1914.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/19/1914/nostruct-align/1914.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10425/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.357788 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 193l id: 193l alignment found: /projects/compbio/experiments/models.97/pdb/19/193l/nostruct-align/193l.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/19/193l/nostruct-align/193l.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/19/193l/nostruct-align/193l.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29135/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.746948 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 19hcA id: 19hcA alignment found: /projects/compbio/experiments/models.97/pdb/19/19hcA/nostruct-align/19hcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/19/19hcA/nostruct-align/19hcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/19/19hcA/nostruct-align/19hcA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4420/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.919922 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a02F id: 1a02F alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a02F/nostruct-align/1a02F.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a02F/nostruct-align/1a02F.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a02F/nostruct-align/1a02F.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7361/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.858887 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a02J id: 1a02J alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a02J/nostruct-align/1a02J.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a02J/nostruct-align/1a02J.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a02J/nostruct-align/1a02J.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14596/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.793945 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a02N id: 1a02N alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a02N/nostruct-align/1a02N.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a02N/nostruct-align/1a02N.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a02N/nostruct-align/1a02N.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21170/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.558838 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a04A id: 1a04A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a04A/nostruct-align/1a04A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a04A/nostruct-align/1a04A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a04A/nostruct-align/1a04A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3811/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.755859 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a0aA id: 1a0aA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a0aA/nostruct-align/1a0aA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a0aA/nostruct-align/1a0aA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a0aA/nostruct-align/1a0aA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12085/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.042847 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a0cA id: 1a0cA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a0cA/nostruct-align/1a0cA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a0cA/nostruct-align/1a0cA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a0cA/nostruct-align/1a0cA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15521/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.097900 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a0fA id: 1a0fA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a0fA/nostruct-align/1a0fA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a0fA/nostruct-align/1a0fA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a0fA/nostruct-align/1a0fA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5940/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.622803 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a0hA id: 1a0hA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a0hA/nostruct-align/1a0hA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a0hA/nostruct-align/1a0hA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a0hA/nostruct-align/1a0hA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12859/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.590820 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a0i id: 1a0i alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a0i/nostruct-align/1a0i.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a0i/nostruct-align/1a0i.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a0i/nostruct-align/1a0i.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26872/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.973877 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a0oD id: 1a0oD alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a0oD/nostruct-align/1a0oD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a0oD/nostruct-align/1a0oD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a0oD/nostruct-align/1a0oD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16806/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.730835 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a0p id: 1a0p alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a0p/nostruct-align/1a0p.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a0p/nostruct-align/1a0p.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a0p/nostruct-align/1a0p.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19406/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.212891 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a0tP id: 1a0tP alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a0tP/nostruct-align/1a0tP.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a0tP/nostruct-align/1a0tP.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a0tP/nostruct-align/1a0tP.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17034/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.585815 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a12A id: 1a12A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a12A/nostruct-align/1a12A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a12A/nostruct-align/1a12A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a12A/nostruct-align/1a12A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11235/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.151855 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a15A id: 1a15A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a15A/nostruct-align/1a15A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a15A/nostruct-align/1a15A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a15A/nostruct-align/1a15A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16465/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.114868 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a17 id: 1a17 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a17/nostruct-align/1a17.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a17/nostruct-align/1a17.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a17/nostruct-align/1a17.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14941/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.026855 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a1d id: 1a1d alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a1d/nostruct-align/1a1d.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a1d/nostruct-align/1a1d.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a1d/nostruct-align/1a1d.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25576/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.735962 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a1iA id: 1a1iA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a1iA/nostruct-align/1a1iA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a1iA/nostruct-align/1a1iA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a1iA/nostruct-align/1a1iA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14164/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -24.638916 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a1tA id: 1a1tA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a1tA/nostruct-align/1a1tA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a1tA/nostruct-align/1a1tA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a1tA/nostruct-align/1a1tA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12208/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.393921 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a1w id: 1a1w alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a1w/nostruct-align/1a1w.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a1w/nostruct-align/1a1w.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a1w/nostruct-align/1a1w.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26789/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.128906 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a1x id: 1a1x alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a1x/nostruct-align/1a1x.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a1x/nostruct-align/1a1x.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a1x/nostruct-align/1a1x.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13366/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.805908 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a1yE id: 1a1yE alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a1yE/nostruct-align/1a1yE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a1yE/nostruct-align/1a1yE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a1yE/nostruct-align/1a1yE.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17300/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.525879 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a1yI id: 1a1yI alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a1yI/nostruct-align/1a1yI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a1yI/nostruct-align/1a1yI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a1yI/nostruct-align/1a1yI.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22100/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.772949 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a1z id: 1a1z alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a1z/nostruct-align/1a1z.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a1z/nostruct-align/1a1z.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a1z/nostruct-align/1a1z.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-382/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.958862 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a26 id: 1a26 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a26/nostruct-align/1a26.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a26/nostruct-align/1a26.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a26/nostruct-align/1a26.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24922/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.497925 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a28A id: 1a28A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a28A/nostruct-align/1a28A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a28A/nostruct-align/1a28A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a28A/nostruct-align/1a28A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3905/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.431885 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a2pA id: 1a2pA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a2pA/nostruct-align/1a2pA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a2pA/nostruct-align/1a2pA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a2pA/nostruct-align/1a2pA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6792/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.663940 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a2vA id: 1a2vA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a2vA/nostruct-align/1a2vA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a2vA/nostruct-align/1a2vA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a2vA/nostruct-align/1a2vA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20801/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.780884 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a2xB id: 1a2xB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a2xB/nostruct-align/1a2xB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a2xB/nostruct-align/1a2xB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a2xB/nostruct-align/1a2xB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15191/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.581909 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a2yB id: 1a2yB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a2yB/nostruct-align/1a2yB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a2yB/nostruct-align/1a2yB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a2yB/nostruct-align/1a2yB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29453/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.064941 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a2zA id: 1a2zA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a2zA/nostruct-align/1a2zA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a2zA/nostruct-align/1a2zA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a2zA/nostruct-align/1a2zA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26569/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.862915 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a32 id: 1a32 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a32/nostruct-align/1a32.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a32/nostruct-align/1a32.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a32/nostruct-align/1a32.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25509/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.991821 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a34A id: 1a34A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a34A/nostruct-align/1a34A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a34A/nostruct-align/1a34A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a34A/nostruct-align/1a34A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23165/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.447876 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a36A id: 1a36A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a36A/nostruct-align/1a36A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a36A/nostruct-align/1a36A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a36A/nostruct-align/1a36A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25252/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.747803 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a3aA id: 1a3aA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a3aA/nostruct-align/1a3aA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a3aA/nostruct-align/1a3aA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a3aA/nostruct-align/1a3aA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24273/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.643921 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a3aC id: 1a3aC alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a3aC/nostruct-align/1a3aC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a3aC/nostruct-align/1a3aC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a3aC/nostruct-align/1a3aC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11505/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.745850 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a3c id: 1a3c alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a3c/nostruct-align/1a3c.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a3c/nostruct-align/1a3c.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a3c/nostruct-align/1a3c.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24708/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.417969 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a3h id: 1a3h alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a3h/nostruct-align/1a3h.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a3h/nostruct-align/1a3h.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a3h/nostruct-align/1a3h.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6922/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.225830 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a3k id: 1a3k alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a3k/nostruct-align/1a3k.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a3k/nostruct-align/1a3k.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a3k/nostruct-align/1a3k.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15848/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.055908 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a3lH id: 1a3lH alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a3lH/nostruct-align/1a3lH.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a3lH/nostruct-align/1a3lH.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a3lH/nostruct-align/1a3lH.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21407/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.539917 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a3lL id: 1a3lL alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a3lL/nostruct-align/1a3lL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a3lL/nostruct-align/1a3lL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a3lL/nostruct-align/1a3lL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30026/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.278931 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a3qA id: 1a3qA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a3qA/nostruct-align/1a3qA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a3qA/nostruct-align/1a3qA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a3qA/nostruct-align/1a3qA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9932/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.041992 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a41 id: 1a41 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a41/nostruct-align/1a41.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a41/nostruct-align/1a41.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a41/nostruct-align/1a41.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28549/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.165894 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a44 id: 1a44 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a44/nostruct-align/1a44.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a44/nostruct-align/1a44.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a44/nostruct-align/1a44.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13606/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.193970 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a48 id: 1a48 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a48/nostruct-align/1a48.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a48/nostruct-align/1a48.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a48/nostruct-align/1a48.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25899/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.261841 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a49A id: 1a49A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a49A/nostruct-align/1a49A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a49A/nostruct-align/1a49A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a49A/nostruct-align/1a49A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15921/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.571899 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a4iA id: 1a4iA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a4iA/nostruct-align/1a4iA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a4iA/nostruct-align/1a4iA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a4iA/nostruct-align/1a4iA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15078/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.801880 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a4iB id: 1a4iB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a4iB/nostruct-align/1a4iB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a4iB/nostruct-align/1a4iB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a4iB/nostruct-align/1a4iB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10530/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.847900 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a4mA id: 1a4mA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a4mA/nostruct-align/1a4mA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a4mA/nostruct-align/1a4mA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a4mA/nostruct-align/1a4mA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24256/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.316895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a4sA id: 1a4sA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a4sA/nostruct-align/1a4sA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a4sA/nostruct-align/1a4sA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a4sA/nostruct-align/1a4sA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14865/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.881836 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a4uA id: 1a4uA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a4uA/nostruct-align/1a4uA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a4uA/nostruct-align/1a4uA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a4uA/nostruct-align/1a4uA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29376/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.303955 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a4yA id: 1a4yA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a4yA/nostruct-align/1a4yA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a4yA/nostruct-align/1a4yA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a4yA/nostruct-align/1a4yA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10973/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.192871 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a4yB id: 1a4yB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a4yB/nostruct-align/1a4yB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a4yB/nostruct-align/1a4yB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a4yB/nostruct-align/1a4yB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14009/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.177979 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a53 id: 1a53 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a53/nostruct-align/1a53.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a53/nostruct-align/1a53.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a53/nostruct-align/1a53.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6282/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.635864 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a58 id: 1a58 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a58/nostruct-align/1a58.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a58/nostruct-align/1a58.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a58/nostruct-align/1a58.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14135/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.149902 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a5j id: 1a5j alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a5j/nostruct-align/1a5j.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a5j/nostruct-align/1a5j.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a5j/nostruct-align/1a5j.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-28952/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.904907 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a5r id: 1a5r alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a5r/nostruct-align/1a5r.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a5r/nostruct-align/1a5r.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a5r/nostruct-align/1a5r.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-29987/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.733887 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a5t id: 1a5t alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a5t/nostruct-align/1a5t.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a5t/nostruct-align/1a5t.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a5t/nostruct-align/1a5t.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24553/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.025879 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a62 id: 1a62 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a62/nostruct-align/1a62.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a62/nostruct-align/1a62.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a62/nostruct-align/1a62.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-32478/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.635864 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a65A id: 1a65A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a65A/nostruct-align/1a65A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a65A/nostruct-align/1a65A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a65A/nostruct-align/1a65A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23733/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.141968 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a68 id: 1a68 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a68/nostruct-align/1a68.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a68/nostruct-align/1a68.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a68/nostruct-align/1a68.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22909/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.433838 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a6bB id: 1a6bB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6bB/nostruct-align/1a6bB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6bB/nostruct-align/1a6bB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a6bB/nostruct-align/1a6bB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13101/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.197876 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a6cA id: 1a6cA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6cA/nostruct-align/1a6cA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6cA/nostruct-align/1a6cA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a6cA/nostruct-align/1a6cA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-138/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.694824 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a6dA id: 1a6dA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6dA/nostruct-align/1a6dA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6dA/nostruct-align/1a6dA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a6dA/nostruct-align/1a6dA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14935/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.566895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a6f id: 1a6f alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6f/nostruct-align/1a6f.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6f/nostruct-align/1a6f.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a6f/nostruct-align/1a6f.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20567/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.604858 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a6jA id: 1a6jA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6jA/nostruct-align/1a6jA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6jA/nostruct-align/1a6jA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a6jA/nostruct-align/1a6jA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31724/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.716919 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a6l id: 1a6l alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6l/nostruct-align/1a6l.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6l/nostruct-align/1a6l.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a6l/nostruct-align/1a6l.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15406/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.555908 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a6m id: 1a6m alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6m/nostruct-align/1a6m.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6m/nostruct-align/1a6m.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a6m/nostruct-align/1a6m.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26276/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.172852 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a6o id: 1a6o alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6o/nostruct-align/1a6o.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6o/nostruct-align/1a6o.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a6o/nostruct-align/1a6o.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12373/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.290894 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a6q id: 1a6q alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6q/nostruct-align/1a6q.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6q/nostruct-align/1a6q.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a6q/nostruct-align/1a6q.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26494/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.189941 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a6s id: 1a6s alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6s/nostruct-align/1a6s.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6s/nostruct-align/1a6s.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a6s/nostruct-align/1a6s.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5380/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.722900 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a73A id: 1a73A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a73A/nostruct-align/1a73A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a73A/nostruct-align/1a73A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a73A/nostruct-align/1a73A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24397/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.948853 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a75A id: 1a75A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a75A/nostruct-align/1a75A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a75A/nostruct-align/1a75A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a75A/nostruct-align/1a75A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32597/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.661865 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a76 id: 1a76 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a76/nostruct-align/1a76.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a76/nostruct-align/1a76.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a76/nostruct-align/1a76.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30638/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.987915 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a78A id: 1a78A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a78A/nostruct-align/1a78A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a78A/nostruct-align/1a78A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a78A/nostruct-align/1a78A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8571/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.402832 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a79A id: 1a79A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a79A/nostruct-align/1a79A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a79A/nostruct-align/1a79A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a79A/nostruct-align/1a79A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14573/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.284912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a7aA id: 1a7aA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a7aA/nostruct-align/1a7aA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a7aA/nostruct-align/1a7aA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a7aA/nostruct-align/1a7aA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10509/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.260986 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a7cA id: 1a7cA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a7cA/nostruct-align/1a7cA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a7cA/nostruct-align/1a7cA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a7cA/nostruct-align/1a7cA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24407/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.156982 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a7j id: 1a7j alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a7j/nostruct-align/1a7j.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a7j/nostruct-align/1a7j.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a7j/nostruct-align/1a7j.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6560/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.615845 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a7s id: 1a7s alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a7s/nostruct-align/1a7s.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a7s/nostruct-align/1a7s.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a7s/nostruct-align/1a7s.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-777/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.707886 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a7tA id: 1a7tA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a7tA/nostruct-align/1a7tA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a7tA/nostruct-align/1a7tA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a7tA/nostruct-align/1a7tA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20796/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.942871 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a7w id: 1a7w alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a7w/nostruct-align/1a7w.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a7w/nostruct-align/1a7w.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a7w/nostruct-align/1a7w.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8975/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.597900 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a81A id: 1a81A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a81A/nostruct-align/1a81A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a81A/nostruct-align/1a81A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a81A/nostruct-align/1a81A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23648/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.041870 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a87 id: 1a87 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a87/nostruct-align/1a87.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a87/nostruct-align/1a87.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a87/nostruct-align/1a87.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30057/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.975830 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a88A id: 1a88A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a88A/nostruct-align/1a88A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a88A/nostruct-align/1a88A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a88A/nostruct-align/1a88A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31764/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.390015 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a8b id: 1a8b alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8b/nostruct-align/1a8b.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8b/nostruct-align/1a8b.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a8b/nostruct-align/1a8b.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9015/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.398926 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a8d id: 1a8d alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8d/nostruct-align/1a8d.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8d/nostruct-align/1a8d.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a8d/nostruct-align/1a8d.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25046/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.476929 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a8e id: 1a8e alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8e/nostruct-align/1a8e.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8e/nostruct-align/1a8e.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a8e/nostruct-align/1a8e.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28623/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.798828 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a8h id: 1a8h alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8h/nostruct-align/1a8h.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8h/nostruct-align/1a8h.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a8h/nostruct-align/1a8h.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30761/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.301880 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a8i id: 1a8i alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8i/nostruct-align/1a8i.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8i/nostruct-align/1a8i.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a8i/nostruct-align/1a8i.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29383/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.262939 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a8l id: 1a8l alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8l/nostruct-align/1a8l.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8l/nostruct-align/1a8l.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a8l/nostruct-align/1a8l.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13415/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.156006 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a8o id: 1a8o alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8o/nostruct-align/1a8o.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8o/nostruct-align/1a8o.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a8o/nostruct-align/1a8o.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3381/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.768799 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a8q id: 1a8q alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8q/nostruct-align/1a8q.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8q/nostruct-align/1a8q.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a8q/nostruct-align/1a8q.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20865/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.574829 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a8rA id: 1a8rA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8rA/nostruct-align/1a8rA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8rA/nostruct-align/1a8rA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a8rA/nostruct-align/1a8rA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29155/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.339966 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a8vA id: 1a8vA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8vA/nostruct-align/1a8vA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8vA/nostruct-align/1a8vA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a8vA/nostruct-align/1a8vA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13539/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.821899 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a8y id: 1a8y alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8y/nostruct-align/1a8y.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8y/nostruct-align/1a8y.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a8y/nostruct-align/1a8y.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25579/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.215942 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a91 id: 1a91 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a91/nostruct-align/1a91.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a91/nostruct-align/1a91.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a91/nostruct-align/1a91.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15708/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.694824 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a92A id: 1a92A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a92A/nostruct-align/1a92A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a92A/nostruct-align/1a92A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a92A/nostruct-align/1a92A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8692/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.027832 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a93A id: 1a93A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a93A/nostruct-align/1a93A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a93A/nostruct-align/1a93A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a93A/nostruct-align/1a93A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9725/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.522949 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a93B id: 1a93B alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a93B/nostruct-align/1a93B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a93B/nostruct-align/1a93B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a93B/nostruct-align/1a93B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14808/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.516968 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a9nA id: 1a9nA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a9nA/nostruct-align/1a9nA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a9nA/nostruct-align/1a9nA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a9nA/nostruct-align/1a9nA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2624/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -21.993896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a9v id: 1a9v alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a9v/nostruct-align/1a9v.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a9v/nostruct-align/1a9v.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a9v/nostruct-align/1a9v.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23364/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.122925 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a9xA id: 1a9xA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a9xA/nostruct-align/1a9xA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a9xA/nostruct-align/1a9xA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a9xA/nostruct-align/1a9xA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2969/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.619873 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1a9xB id: 1a9xB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a9xB/nostruct-align/1a9xB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a9xB/nostruct-align/1a9xB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a9xB/nostruct-align/1a9xB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13555/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.925903 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aa0 id: 1aa0 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aa0/nostruct-align/1aa0.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aa0/nostruct-align/1aa0.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aa0/nostruct-align/1aa0.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5473/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.146973 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aa7A id: 1aa7A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aa7A/nostruct-align/1aa7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aa7A/nostruct-align/1aa7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aa7A/nostruct-align/1aa7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16917/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.262939 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aa8A id: 1aa8A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aa8A/nostruct-align/1aa8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aa8A/nostruct-align/1aa8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aa8A/nostruct-align/1aa8A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26608/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.966919 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aab id: 1aab alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aab/nostruct-align/1aab.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aab/nostruct-align/1aab.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aab/nostruct-align/1aab.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24719/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.127930 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aac id: 1aac alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aac/nostruct-align/1aac.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aac/nostruct-align/1aac.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aac/nostruct-align/1aac.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7660/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.596802 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aaf id: 1aaf alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aaf/nostruct-align/1aaf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aaf/nostruct-align/1aaf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aaf/nostruct-align/1aaf.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-9090/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.393921 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aaj id: 1aaj alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aaj/nostruct-align/1aaj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aaj/nostruct-align/1aaj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aaj/nostruct-align/1aaj.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-3219/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.504883 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aak id: 1aak alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aak/nostruct-align/1aak.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aak/nostruct-align/1aak.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aak/nostruct-align/1aak.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8716/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.553833 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aapA id: 1aapA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aapA/nostruct-align/1aapA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aapA/nostruct-align/1aapA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aapA/nostruct-align/1aapA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31177/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.940918 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aayA id: 1aayA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aayA/nostruct-align/1aayA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aayA/nostruct-align/1aayA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aayA/nostruct-align/1aayA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27222/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -29.415894 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ab3 id: 1ab3 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ab3/nostruct-align/1ab3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ab3/nostruct-align/1ab3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ab3/nostruct-align/1ab3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4560/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.003784 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ab4 id: 1ab4 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ab4/nostruct-align/1ab4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ab4/nostruct-align/1ab4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ab4/nostruct-align/1ab4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9185/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.619873 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ab8A id: 1ab8A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ab8A/nostruct-align/1ab8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ab8A/nostruct-align/1ab8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ab8A/nostruct-align/1ab8A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28896/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.886963 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aba id: 1aba alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aba/nostruct-align/1aba.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aba/nostruct-align/1aba.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aba/nostruct-align/1aba.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4506/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.355835 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aboA id: 1aboA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aboA/nostruct-align/1aboA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aboA/nostruct-align/1aboA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aboA/nostruct-align/1aboA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23663/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.260986 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1abrA id: 1abrA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1abrA/nostruct-align/1abrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1abrA/nostruct-align/1abrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1abrA/nostruct-align/1abrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15213/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.448853 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1abrB id: 1abrB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1abrB/nostruct-align/1abrB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1abrB/nostruct-align/1abrB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1abrB/nostruct-align/1abrB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12094/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.868896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1abrB_1 id: 1abrB_1 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1abrB_1/nostruct-align/1abrB_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1abrB_1/nostruct-align/1abrB_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1abrB_1/nostruct-align/1abrB_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8127/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.788940 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1abrB_2 id: 1abrB_2 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1abrB_2/nostruct-align/1abrB_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1abrB_2/nostruct-align/1abrB_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1abrB_2/nostruct-align/1abrB_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6930/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.263916 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1abv id: 1abv alignment found: /projects/compbio/experiments/models.97/pdb/1a/1abv/nostruct-align/1abv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1abv/nostruct-align/1abv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1abv/nostruct-align/1abv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4857/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.178833 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1abwA id: 1abwA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1abwA/nostruct-align/1abwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1abwA/nostruct-align/1abwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1abwA/nostruct-align/1abwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5747/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.029907 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1abz id: 1abz alignment found: /projects/compbio/experiments/models.97/pdb/1a/1abz/nostruct-align/1abz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1abz/nostruct-align/1abz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1abz/nostruct-align/1abz.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31148/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.764893 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ac5 id: 1ac5 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ac5/nostruct-align/1ac5.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ac5/nostruct-align/1ac5.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ac5/nostruct-align/1ac5.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14820/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.180786 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aca id: 1aca alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aca/nostruct-align/1aca.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aca/nostruct-align/1aca.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aca/nostruct-align/1aca.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31137/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.465942 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1acc id: 1acc alignment found: /projects/compbio/experiments/models.97/pdb/1a/1acc/nostruct-align/1acc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1acc/nostruct-align/1acc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1acc/nostruct-align/1acc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7992/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.910889 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1acf id: 1acf alignment found: /projects/compbio/experiments/models.97/pdb/1a/1acf/nostruct-align/1acf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1acf/nostruct-align/1acf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1acf/nostruct-align/1acf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24789/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.553833 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aco_1 id: 1aco_1 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1aco_1/nostruct-align/1aco_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1aco_1/nostruct-align/1aco_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1aco_1/nostruct-align/1aco_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31243/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.758911 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aco_2 id: 1aco_2 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1aco_2/nostruct-align/1aco_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1aco_2/nostruct-align/1aco_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1aco_2/nostruct-align/1aco_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19094/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.134888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1acp id: 1acp alignment found: /projects/compbio/experiments/models.97/pdb/1a/1acp/nostruct-align/1acp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1acp/nostruct-align/1acp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1acp/nostruct-align/1acp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16484/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.642822 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1acz id: 1acz alignment found: /projects/compbio/experiments/models.97/pdb/1a/1acz/nostruct-align/1acz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1acz/nostruct-align/1acz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1acz/nostruct-align/1acz.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25009/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.052979 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ad2 id: 1ad2 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ad2/nostruct-align/1ad2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ad2/nostruct-align/1ad2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ad2/nostruct-align/1ad2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32054/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.750854 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ad3A id: 1ad3A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ad3A/nostruct-align/1ad3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ad3A/nostruct-align/1ad3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ad3A/nostruct-align/1ad3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14182/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.116943 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ad6 id: 1ad6 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ad6/nostruct-align/1ad6.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ad6/nostruct-align/1ad6.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ad6/nostruct-align/1ad6.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13262/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.417969 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1add id: 1add alignment found: /projects/compbio/experiments/models.97/pdb/1a/1add/nostruct-align/1add.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1add/nostruct-align/1add.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1add/nostruct-align/1add.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26170/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.233887 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1adeA id: 1adeA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1adeA/nostruct-align/1adeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1adeA/nostruct-align/1adeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1adeA/nostruct-align/1adeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24933/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.305908 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1adjA id: 1adjA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1adjA/nostruct-align/1adjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1adjA/nostruct-align/1adjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1adjA/nostruct-align/1adjA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8885/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.841919 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1adn id: 1adn alignment found: /projects/compbio/experiments/models.97/pdb/1a/1adn/nostruct-align/1adn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1adn/nostruct-align/1adn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1adn/nostruct-align/1adn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2383/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.728882 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1adoA id: 1adoA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1adoA/nostruct-align/1adoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1adoA/nostruct-align/1adoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1adoA/nostruct-align/1adoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10218/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.031982 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1adr id: 1adr alignment found: /projects/compbio/experiments/models.97/pdb/1a/1adr/nostruct-align/1adr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1adr/nostruct-align/1adr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1adr/nostruct-align/1adr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20841/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.353882 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ads id: 1ads alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ads/nostruct-align/1ads.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ads/nostruct-align/1ads.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ads/nostruct-align/1ads.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-2148/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.994873 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1adx id: 1adx alignment found: /projects/compbio/experiments/models.97/pdb/1a/1adx/nostruct-align/1adx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1adx/nostruct-align/1adx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1adx/nostruct-align/1adx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30236/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.249878 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ae9A id: 1ae9A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ae9A/nostruct-align/1ae9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ae9A/nostruct-align/1ae9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ae9A/nostruct-align/1ae9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29329/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.455811 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aep id: 1aep alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aep/nostruct-align/1aep.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aep/nostruct-align/1aep.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aep/nostruct-align/1aep.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15732/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.318848 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aerA id: 1aerA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aerA/nostruct-align/1aerA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aerA/nostruct-align/1aerA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aerA/nostruct-align/1aerA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26968/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.455811 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1af7 id: 1af7 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1af7/nostruct-align/1af7.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1af7/nostruct-align/1af7.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1af7/nostruct-align/1af7.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20136/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.182861 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1afoA id: 1afoA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1afoA/nostruct-align/1afoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1afoA/nostruct-align/1afoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1afoA/nostruct-align/1afoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23651/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.891968 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1afp id: 1afp alignment found: /projects/compbio/experiments/models.97/pdb/1a/1afp/nostruct-align/1afp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1afp/nostruct-align/1afp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1afp/nostruct-align/1afp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21088/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.997925 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1afrA id: 1afrA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1afrA/nostruct-align/1afrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1afrA/nostruct-align/1afrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1afrA/nostruct-align/1afrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25653/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.011963 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1afwA id: 1afwA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1afwA/nostruct-align/1afwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1afwA/nostruct-align/1afwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1afwA/nostruct-align/1afwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8008/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.992798 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ag4 id: 1ag4 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ag4/nostruct-align/1ag4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ag4/nostruct-align/1ag4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ag4/nostruct-align/1ag4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19733/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.411865 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ag7 id: 1ag7 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ag7/nostruct-align/1ag7.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ag7/nostruct-align/1ag7.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ag7/nostruct-align/1ag7.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21759/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.255981 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ag9A id: 1ag9A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ag9A/nostruct-align/1ag9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ag9A/nostruct-align/1ag9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ag9A/nostruct-align/1ag9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3371/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.132935 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1agdA id: 1agdA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agdA/nostruct-align/1agdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agdA/nostruct-align/1agdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1agdA/nostruct-align/1agdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5586/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.657837 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1agdB id: 1agdB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agdB/nostruct-align/1agdB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agdB/nostruct-align/1agdB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1agdB/nostruct-align/1agdB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30624/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.631958 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1agg id: 1agg alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agg/nostruct-align/1agg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agg/nostruct-align/1agg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1agg/nostruct-align/1agg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22157/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.213867 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1agjA id: 1agjA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agjA/nostruct-align/1agjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agjA/nostruct-align/1agjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1agjA/nostruct-align/1agjA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17818/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.772827 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1agnA id: 1agnA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agnA/nostruct-align/1agnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agnA/nostruct-align/1agnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1agnA/nostruct-align/1agnA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28555/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.254883 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1agqA id: 1agqA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agqA/nostruct-align/1agqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agqA/nostruct-align/1agqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1agqA/nostruct-align/1agqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8733/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.807861 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1agqD id: 1agqD alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agqD/nostruct-align/1agqD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agqD/nostruct-align/1agqD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1agqD/nostruct-align/1agqD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3493/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.661865 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1agrE id: 1agrE alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agrE/nostruct-align/1agrE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agrE/nostruct-align/1agrE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1agrE/nostruct-align/1agrE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27171/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.009888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1agrH id: 1agrH alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agrH/nostruct-align/1agrH.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agrH/nostruct-align/1agrH.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1agrH/nostruct-align/1agrH.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17041/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.938843 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1agx id: 1agx alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agx/nostruct-align/1agx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agx/nostruct-align/1agx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1agx/nostruct-align/1agx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25649/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.516846 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ah1 id: 1ah1 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ah1/nostruct-align/1ah1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ah1/nostruct-align/1ah1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ah1/nostruct-align/1ah1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29535/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.010864 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ah7 id: 1ah7 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ah7/nostruct-align/1ah7.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ah7/nostruct-align/1ah7.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ah7/nostruct-align/1ah7.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21959/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.853882 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ah9 id: 1ah9 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ah9/nostruct-align/1ah9.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ah9/nostruct-align/1ah9.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ah9/nostruct-align/1ah9.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24408/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.133911 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ahjB id: 1ahjB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ahjB/nostruct-align/1ahjB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ahjB/nostruct-align/1ahjB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ahjB/nostruct-align/1ahjB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25414/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.367920 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ahl id: 1ahl alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ahl/nostruct-align/1ahl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ahl/nostruct-align/1ahl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ahl/nostruct-align/1ahl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29540/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.677856 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ahm id: 1ahm alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ahm/nostruct-align/1ahm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ahm/nostruct-align/1ahm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ahm/nostruct-align/1ahm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16906/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.572876 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aho id: 1aho alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aho/nostruct-align/1aho.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aho/nostruct-align/1aho.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aho/nostruct-align/1aho.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11848/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.686890 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ahpA id: 1ahpA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ahpA/nostruct-align/1ahpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ahpA/nostruct-align/1ahpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ahpA/nostruct-align/1ahpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27036/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.886841 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ahsA id: 1ahsA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ahsA/nostruct-align/1ahsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ahsA/nostruct-align/1ahsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ahsA/nostruct-align/1ahsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7494/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.957886 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ahtH id: 1ahtH alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ahtH/nostruct-align/1ahtH.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ahtH/nostruct-align/1ahtH.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ahtH/nostruct-align/1ahtH.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23056/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.869873 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ahtL id: 1ahtL alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ahtL/nostruct-align/1ahtL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ahtL/nostruct-align/1ahtL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ahtL/nostruct-align/1ahtL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6916/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.079956 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ai7A id: 1ai7A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ai7A/nostruct-align/1ai7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ai7A/nostruct-align/1ai7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ai7A/nostruct-align/1ai7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32352/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.820923 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aie id: 1aie alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aie/nostruct-align/1aie.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aie/nostruct-align/1aie.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aie/nostruct-align/1aie.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1517/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.224976 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aihA id: 1aihA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aihA/nostruct-align/1aihA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aihA/nostruct-align/1aihA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aihA/nostruct-align/1aihA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28399/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.816895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aijL id: 1aijL alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aijL/nostruct-align/1aijL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aijL/nostruct-align/1aijL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aijL/nostruct-align/1aijL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23707/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.100830 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aikC id: 1aikC alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aikC/nostruct-align/1aikC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aikC/nostruct-align/1aikC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aikC/nostruct-align/1aikC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30422/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.549927 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aikN id: 1aikN alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aikN/nostruct-align/1aikN.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aikN/nostruct-align/1aikN.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aikN/nostruct-align/1aikN.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30589/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.380859 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ail id: 1ail alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ail/nostruct-align/1ail.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ail/nostruct-align/1ail.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ail/nostruct-align/1ail.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5810/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.099854 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aim id: 1aim alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aim/nostruct-align/1aim.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aim/nostruct-align/1aim.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aim/nostruct-align/1aim.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16883/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.252808 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aipE id: 1aipE alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aipE/nostruct-align/1aipE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aipE/nostruct-align/1aipE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aipE/nostruct-align/1aipE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26096/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.120850 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1air id: 1air alignment found: /projects/compbio/experiments/models.97/pdb/1a/1air/nostruct-align/1air.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1air/nostruct-align/1air.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1air/nostruct-align/1air.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29188/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.057861 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aisB id: 1aisB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aisB/nostruct-align/1aisB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aisB/nostruct-align/1aisB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aisB/nostruct-align/1aisB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1451/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.553833 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aiu id: 1aiu alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aiu/nostruct-align/1aiu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aiu/nostruct-align/1aiu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aiu/nostruct-align/1aiu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28309/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.587891 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aiw id: 1aiw alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aiw/nostruct-align/1aiw.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aiw/nostruct-align/1aiw.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aiw/nostruct-align/1aiw.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15691/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.009888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aizA id: 1aizA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aizA/nostruct-align/1aizA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aizA/nostruct-align/1aizA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aizA/nostruct-align/1aizA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16671/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.316895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aj2 id: 1aj2 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aj2/nostruct-align/1aj2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aj2/nostruct-align/1aj2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aj2/nostruct-align/1aj2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15317/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.959839 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aj3 id: 1aj3 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aj3/nostruct-align/1aj3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aj3/nostruct-align/1aj3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aj3/nostruct-align/1aj3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-581/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.676880 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aj6 id: 1aj6 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aj6/nostruct-align/1aj6.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aj6/nostruct-align/1aj6.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aj6/nostruct-align/1aj6.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31669/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.419922 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aj8A id: 1aj8A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aj8A/nostruct-align/1aj8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aj8A/nostruct-align/1aj8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aj8A/nostruct-align/1aj8A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24369/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.991943 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ajj id: 1ajj alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ajj/nostruct-align/1ajj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ajj/nostruct-align/1ajj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ajj/nostruct-align/1ajj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-444/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.115967 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ajqA id: 1ajqA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ajqA/nostruct-align/1ajqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ajqA/nostruct-align/1ajqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ajqA/nostruct-align/1ajqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24991/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.542969 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ajqB id: 1ajqB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ajqB/nostruct-align/1ajqB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ajqB/nostruct-align/1ajqB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ajqB/nostruct-align/1ajqB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5688/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.555908 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ajsA id: 1ajsA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ajsA/nostruct-align/1ajsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ajsA/nostruct-align/1ajsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ajsA/nostruct-align/1ajsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19311/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.792847 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ajyA id: 1ajyA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ajyA/nostruct-align/1ajyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ajyA/nostruct-align/1ajyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ajyA/nostruct-align/1ajyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13446/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.568848 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ak0 id: 1ak0 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ak0/nostruct-align/1ak0.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ak0/nostruct-align/1ak0.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ak0/nostruct-align/1ak0.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3157/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.573853 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ak1 id: 1ak1 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ak1/nostruct-align/1ak1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ak1/nostruct-align/1ak1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ak1/nostruct-align/1ak1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5422/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.097900 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ak4C id: 1ak4C alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ak4C/nostruct-align/1ak4C.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ak4C/nostruct-align/1ak4C.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ak4C/nostruct-align/1ak4C.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6767/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.940918 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ak5 id: 1ak5 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ak5/nostruct-align/1ak5.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ak5/nostruct-align/1ak5.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ak5/nostruct-align/1ak5.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11425/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.551880 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ak7 id: 1ak7 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ak7/nostruct-align/1ak7.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ak7/nostruct-align/1ak7.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ak7/nostruct-align/1ak7.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8549/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.525879 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1akeA id: 1akeA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1akeA/nostruct-align/1akeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1akeA/nostruct-align/1akeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1akeA/nostruct-align/1akeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24081/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.575928 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1akhA id: 1akhA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1akhA/nostruct-align/1akhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1akhA/nostruct-align/1akhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1akhA/nostruct-align/1akhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21565/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.819946 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1akhB id: 1akhB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1akhB/nostruct-align/1akhB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1akhB/nostruct-align/1akhB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1akhB/nostruct-align/1akhB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7162/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.219849 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ako id: 1ako alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ako/nostruct-align/1ako.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ako/nostruct-align/1ako.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ako/nostruct-align/1ako.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9523/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.025879 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1akr id: 1akr alignment found: /projects/compbio/experiments/models.97/pdb/1a/1akr/nostruct-align/1akr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1akr/nostruct-align/1akr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1akr/nostruct-align/1akr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12514/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.395874 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aky id: 1aky alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aky/nostruct-align/1aky.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aky/nostruct-align/1aky.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aky/nostruct-align/1aky.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file ./tmp/tmp-build-weighted-model-titanic-29691/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.793945 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1akz id: 1akz alignment found: /projects/compbio/experiments/models.97/pdb/1a/1akz/nostruct-align/1akz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1akz/nostruct-align/1akz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1akz/nostruct-align/1akz.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19232/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.416992 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1al3 id: 1al3 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1al3/nostruct-align/1al3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1al3/nostruct-align/1al3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1al3/nostruct-align/1al3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15289/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.258911 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1alkA id: 1alkA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1alkA/nostruct-align/1alkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1alkA/nostruct-align/1alkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1alkA/nostruct-align/1alkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32299/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.383911 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1alo id: 1alo alignment found: /projects/compbio/experiments/models.97/pdb/1a/1alo/nostruct-align/1alo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1alo/nostruct-align/1alo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1alo/nostruct-align/1alo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-11562/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.391968 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1alq id: 1alq alignment found: /projects/compbio/experiments/models.97/pdb/1a/1alq/nostruct-align/1alq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1alq/nostruct-align/1alq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1alq/nostruct-align/1alq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23374/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.958862 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1alu id: 1alu alignment found: /projects/compbio/experiments/models.97/pdb/1a/1alu/nostruct-align/1alu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1alu/nostruct-align/1alu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1alu/nostruct-align/1alu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-22707/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.870850 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1alvA id: 1alvA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1alvA/nostruct-align/1alvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1alvA/nostruct-align/1alvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1alvA/nostruct-align/1alvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-6305/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.516846 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aly id: 1aly alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aly/nostruct-align/1aly.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aly/nostruct-align/1aly.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aly/nostruct-align/1aly.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-29754/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.130859 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1am2 id: 1am2 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1am2/nostruct-align/1am2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1am2/nostruct-align/1am2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1am2/nostruct-align/1am2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-12225/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.440918 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1am7A id: 1am7A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1am7A/nostruct-align/1am7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1am7A/nostruct-align/1am7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1am7A/nostruct-align/1am7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-3665/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.140869 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1am9A id: 1am9A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1am9A/nostruct-align/1am9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1am9A/nostruct-align/1am9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1am9A/nostruct-align/1am9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23734/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.545898 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1amf id: 1amf alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amf/nostruct-align/1amf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amf/nostruct-align/1amf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1amf/nostruct-align/1amf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28983/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.752930 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1amg_1 id: 1amg_1 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1amg_1/nostruct-align/1amg_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1amg_1/nostruct-align/1amg_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1amg_1/nostruct-align/1amg_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13304/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.086792 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1amg_2 id: 1amg_2 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1amg_2/nostruct-align/1amg_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1amg_2/nostruct-align/1amg_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1amg_2/nostruct-align/1amg_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22758/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.699951 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1amj id: 1amj alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amj/nostruct-align/1amj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amj/nostruct-align/1amj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1amj/nostruct-align/1amj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13710/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.886963 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1amk id: 1amk alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amk/nostruct-align/1amk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amk/nostruct-align/1amk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1amk/nostruct-align/1amk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29810/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.771973 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aml id: 1aml alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aml/nostruct-align/1aml.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aml/nostruct-align/1aml.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aml/nostruct-align/1aml.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13673/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.984985 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1amm id: 1amm alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amm/nostruct-align/1amm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amm/nostruct-align/1amm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1amm/nostruct-align/1amm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32581/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.789917 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1amoA id: 1amoA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amoA/nostruct-align/1amoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amoA/nostruct-align/1amoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1amoA/nostruct-align/1amoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25178/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.268921 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1amp id: 1amp alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amp/nostruct-align/1amp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amp/nostruct-align/1amp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1amp/nostruct-align/1amp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26778/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.381836 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1amtA id: 1amtA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amtA/nostruct-align/1amtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amtA/nostruct-align/1amtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1amtA/nostruct-align/1amtA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23943/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.573853 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1amuA id: 1amuA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amuA/nostruct-align/1amuA.t99.a2m.gz ScoreLibT99::make_wt_model: model file older than alignment: building /projects/compbio/experiments/models.97/pdb/1a/1amuA/nostruct-align/1amuA.t99-w0.5.mod from file /projects/compbio/experiments/models.97/pdb/1a/1amuA/nostruct-align/1amuA.t99.a2m.gz Reading /projects/compbio/bin/scripts/sam-t99.conf @@@@ chgrp protein /projects/compbio/tmp/tmp-build-weighted-model-eclipse-2243 @@@@ uniqueseq /projects/compbio/tmp/tmp-build-weighted-model-eclipse-2243/tmp -alignfile /projects/compbio/experiments/models.97/pdb/1a/1amuA/nostruct-align/1amuA.t99.a2m.gz \ -a protein -percent_id 0.8 SAM: uniqueseq v3.2 (June, 2000) compiled 07/06/00_15:43:59 Reading alignment file /projects/compbio/experiments/models.97/pdb/1a/1amuA/nostruct-align/1amuA.t99.a2m.gz (953 sequences, 509 columns) as A2M alignment. Writing sequence output to /projects/compbio/tmp/tmp-build-weighted-model-eclipse-2243/tmp.a2m. Dropping 20 (of 953) duplicate sequences with differing IDs Dropping 288 (of 953) sequences with > 80.0% id 645 sequences left after dropping 308 of 953 sequences. @@@@ modelfromalign /projects/compbio/tmp/tmp-build-weighted-model-eclipse-2243/tmp -alignfile /projects/compbio/tmp/tmp-build-weighted-model-eclipse-2243/tmp.a2m \ -insert /projects/compbio/lib/fssp-trained.regularizer \ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -prior_library /projects/compbio/lib/recode3.20comp \ -binary_output 1 -a protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10 Reading parameter file /projects/compbio/lib/fssp-trained.regularizer /projects/compbio/lib/fssp-trained.regularizer(1): Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP SAM: modelfromalign v3.2 (June, 2000) compiled 07/06/00_15:43:15 Reading alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-2243/tmp.a2m (645 sequences, 509 columns) as A2M alignment. @@@@ cp -f /projects/compbio/tmp/tmp-build-weighted-model-eclipse-2243/tmp.mod /projects/compbio/experiments/models.97/pdb/1a/1amuA/nostruct-align/1amuA.t99-w0.5.mod Reading /projects/compbio/bin/scripts/sam-t99.confReading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amuA/nostruct-align/1amuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1amuA/nostruct-align/1amuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-2243/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.838867 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1amx id: 1amx alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amx/nostruct-align/1amx.t99.a2m.gz ScoreLibT99::make_wt_model: model file older than alignment: building /projects/compbio/experiments/models.97/pdb/1a/1amx/nostruct-align/1amx.t99-w0.5.mod from file /projects/compbio/experiments/models.97/pdb/1a/1amx/nostruct-align/1amx.t99.a2m.gz Reading /projects/compbio/bin/scripts/sam-t99.conf @@@@ chgrp protein /projects/compbio/tmp/tmp-build-weighted-model-eclipse-16879 @@@@ uniqueseq /projects/compbio/tmp/tmp-build-weighted-model-eclipse-16879/tmp -alignfile /projects/compbio/experiments/models.97/pdb/1a/1amx/nostruct-align/1amx.t99.a2m.gz \ -a protein -percent_id 0.8 SAM: uniqueseq v3.2 (June, 2000) compiled 07/06/00_15:43:59 Reading alignment file /projects/compbio/experiments/models.97/pdb/1a/1amx/nostruct-align/1amx.t99.a2m.gz (6 sequences, 150 columns) as A2M alignment. Writing sequence output to /projects/compbio/tmp/tmp-build-weighted-model-eclipse-16879/tmp.a2m. Dropping 1 (of 6) duplicate sequences with differing IDs Dropping 3 (of 6) sequences with > 80.0% id 2 sequences left after dropping 4 of 6 sequences. @@@@ modelfromalign /projects/compbio/tmp/tmp-build-weighted-model-eclipse-16879/tmp -alignfile /projects/compbio/tmp/tmp-build-weighted-model-eclipse-16879/tmp.a2m \ -insert /projects/compbio/lib/fssp-trained.regularizer \ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -prior_library /projects/compbio/lib/recode3.20comp \ -binary_output 1 -a protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10 Reading parameter file /projects/compbio/lib/fssp-trained.regularizer /projects/compbio/lib/fssp-trained.regularizer(1): Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP SAM: modelfromalign v3.2 (June, 2000) compiled 07/06/00_15:43:15 Reading alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-16879/tmp.a2m (2 sequences, 150 columns) as A2M alignment. @@@@ cp -f /projects/compbio/tmp/tmp-build-weighted-model-eclipse-16879/tmp.mod /projects/compbio/experiments/models.97/pdb/1a/1amx/nostruct-align/1amx.t99-w0.5.mod Reading /projects/compbio/bin/scripts/sam-t99.confReading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amx/nostruct-align/1amx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1amx/nostruct-align/1amx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-16879/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.606934 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1amy_1 id: 1amy_1 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1amy_1/nostruct-align/1amy_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1amy_1/nostruct-align/1amy_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1amy_1/nostruct-align/1amy_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24652/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.463867 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1amy_2 id: 1amy_2 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1amy_2/nostruct-align/1amy_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1amy_2/nostruct-align/1amy_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1amy_2/nostruct-align/1amy_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12341/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.192871 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1an2A id: 1an2A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1an2A/nostruct-align/1an2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1an2A/nostruct-align/1an2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1an2A/nostruct-align/1an2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13547/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.403931 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1an4A id: 1an4A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1an4A/nostruct-align/1an4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1an4A/nostruct-align/1an4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1an4A/nostruct-align/1an4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11486/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.217896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1an7A id: 1an7A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1an7A/nostruct-align/1an7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1an7A/nostruct-align/1an7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1an7A/nostruct-align/1an7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25277/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.518799 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1an8 id: 1an8 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1an8/nostruct-align/1an8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1an8/nostruct-align/1an8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1an8/nostruct-align/1an8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22376/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.115967 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1an9A id: 1an9A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1an9A/nostruct-align/1an9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1an9A/nostruct-align/1an9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1an9A/nostruct-align/1an9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18791/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.884888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1anf id: 1anf alignment found: /projects/compbio/experiments/models.97/pdb/1a/1anf/nostruct-align/1anf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1anf/nostruct-align/1anf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1anf/nostruct-align/1anf.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22430/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -19.638916 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ans id: 1ans alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ans/nostruct-align/1ans.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ans/nostruct-align/1ans.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ans/nostruct-align/1ans.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27342/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.595947 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1anv id: 1anv alignment found: /projects/compbio/experiments/models.97/pdb/1a/1anv/nostruct-align/1anv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1anv/nostruct-align/1anv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1anv/nostruct-align/1anv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20232/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.248901 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ao6A id: 1ao6A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ao6A/nostruct-align/1ao6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ao6A/nostruct-align/1ao6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ao6A/nostruct-align/1ao6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8562/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.268921 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aoa id: 1aoa alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoa/nostruct-align/1aoa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoa/nostruct-align/1aoa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoa/nostruct-align/1aoa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19064/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.520874 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aocA id: 1aocA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aocA/nostruct-align/1aocA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aocA/nostruct-align/1aocA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aocA/nostruct-align/1aocA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10576/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.982910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aoeA id: 1aoeA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoeA/nostruct-align/1aoeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoeA/nostruct-align/1aoeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoeA/nostruct-align/1aoeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19302/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.314941 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aohA id: 1aohA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aohA/nostruct-align/1aohA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aohA/nostruct-align/1aohA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aohA/nostruct-align/1aohA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10698/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.956909 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aohB id: 1aohB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aohB/nostruct-align/1aohB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aohB/nostruct-align/1aohB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aohB/nostruct-align/1aohB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21992/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.320923 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aoiA id: 1aoiA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoiA/nostruct-align/1aoiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoiA/nostruct-align/1aoiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoiA/nostruct-align/1aoiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21544/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.476929 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aoiB id: 1aoiB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoiB/nostruct-align/1aoiB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoiB/nostruct-align/1aoiB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoiB/nostruct-align/1aoiB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14525/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.867920 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aoiC id: 1aoiC alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoiC/nostruct-align/1aoiC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoiC/nostruct-align/1aoiC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoiC/nostruct-align/1aoiC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32287/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.857910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aoiD id: 1aoiD alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoiD/nostruct-align/1aoiD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoiD/nostruct-align/1aoiD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoiD/nostruct-align/1aoiD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31992/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.429810 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aoiF id: 1aoiF alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoiF/nostruct-align/1aoiF.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoiF/nostruct-align/1aoiF.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoiF/nostruct-align/1aoiF.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5590/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.057983 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aoiG id: 1aoiG alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoiG/nostruct-align/1aoiG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoiG/nostruct-align/1aoiG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoiG/nostruct-align/1aoiG.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18841/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.592896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aojA id: 1aojA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aojA/nostruct-align/1aojA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aojA/nostruct-align/1aojA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aojA/nostruct-align/1aojA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30331/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.900879 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aol id: 1aol alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aol/nostruct-align/1aol.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aol/nostruct-align/1aol.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aol/nostruct-align/1aol.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30316/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.284912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aoo id: 1aoo alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoo/nostruct-align/1aoo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoo/nostruct-align/1aoo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoo/nostruct-align/1aoo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17788/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.126831 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aop id: 1aop alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aop/nostruct-align/1aop.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aop/nostruct-align/1aop.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aop/nostruct-align/1aop.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26307/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.478882 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aoqA id: 1aoqA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoqA/nostruct-align/1aoqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoqA/nostruct-align/1aoqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoqA/nostruct-align/1aoqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3544/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.295898 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aorA id: 1aorA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aorA/nostruct-align/1aorA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aorA/nostruct-align/1aorA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aorA/nostruct-align/1aorA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11103/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.671875 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aorA_1 id: 1aorA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1aorA_1/nostruct-align/1aorA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1aorA_1/nostruct-align/1aorA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1aorA_1/nostruct-align/1aorA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20749/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.377808 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aorA_2 id: 1aorA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1aorA_2/nostruct-align/1aorA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1aorA_2/nostruct-align/1aorA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1aorA_2/nostruct-align/1aorA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1404/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.267944 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aoxA id: 1aoxA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoxA/nostruct-align/1aoxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoxA/nostruct-align/1aoxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoxA/nostruct-align/1aoxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13884/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.484863 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aoy id: 1aoy alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoy/nostruct-align/1aoy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoy/nostruct-align/1aoy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoy/nostruct-align/1aoy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15570/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.836914 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aozA id: 1aozA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aozA/nostruct-align/1aozA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aozA/nostruct-align/1aozA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aozA/nostruct-align/1aozA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12490/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.171997 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aozA_1 id: 1aozA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1aozA_1/nostruct-align/1aozA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1aozA_1/nostruct-align/1aozA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1aozA_1/nostruct-align/1aozA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16410/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.727905 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aozA_2 id: 1aozA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1aozA_2/nostruct-align/1aozA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1aozA_2/nostruct-align/1aozA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1aozA_2/nostruct-align/1aozA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9900/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.543945 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aozA_3 id: 1aozA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1aozA_3/nostruct-align/1aozA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1aozA_3/nostruct-align/1aozA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1aozA_3/nostruct-align/1aozA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-779/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.342896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ap0 id: 1ap0 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ap0/nostruct-align/1ap0.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ap0/nostruct-align/1ap0.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ap0/nostruct-align/1ap0.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6126/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.739868 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ap7 id: 1ap7 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ap7/nostruct-align/1ap7.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ap7/nostruct-align/1ap7.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ap7/nostruct-align/1ap7.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6344/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.591919 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ap8 id: 1ap8 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ap8/nostruct-align/1ap8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ap8/nostruct-align/1ap8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ap8/nostruct-align/1ap8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30421/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.050903 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1apa id: 1apa alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apa/nostruct-align/1apa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apa/nostruct-align/1apa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1apa/nostruct-align/1apa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file ./tmp/tmp-build-weighted-model-titanic-29216/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.895874 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1apf id: 1apf alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apf/nostruct-align/1apf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apf/nostruct-align/1apf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1apf/nostruct-align/1apf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22983/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.657959 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1apj id: 1apj alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apj/nostruct-align/1apj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apj/nostruct-align/1apj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1apj/nostruct-align/1apj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15916/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.356934 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1apmE id: 1apmE alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apmE/nostruct-align/1apmE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apmE/nostruct-align/1apmE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1apmE/nostruct-align/1apmE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4239/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.662842 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1apmI id: 1apmI alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apmI/nostruct-align/1apmI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apmI/nostruct-align/1apmI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1apmI/nostruct-align/1apmI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11901/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.640869 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1apo id: 1apo alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apo/nostruct-align/1apo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apo/nostruct-align/1apo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1apo/nostruct-align/1apo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31402/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.880859 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1apq id: 1apq alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apq/nostruct-align/1apq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apq/nostruct-align/1apq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1apq/nostruct-align/1apq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32579/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.595947 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aps id: 1aps alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aps/nostruct-align/1aps.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aps/nostruct-align/1aps.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aps/nostruct-align/1aps.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-26746/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.614868 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1apyA id: 1apyA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apyA/nostruct-align/1apyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apyA/nostruct-align/1apyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1apyA/nostruct-align/1apyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21837/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.353882 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1apyB id: 1apyB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apyB/nostruct-align/1apyB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apyB/nostruct-align/1apyB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1apyB/nostruct-align/1apyB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31186/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.134888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aq0A id: 1aq0A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aq0A/nostruct-align/1aq0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aq0A/nostruct-align/1aq0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aq0A/nostruct-align/1aq0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20400/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.820923 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aq5A id: 1aq5A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aq5A/nostruct-align/1aq5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aq5A/nostruct-align/1aq5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aq5A/nostruct-align/1aq5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10169/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.131836 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aq6A id: 1aq6A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aq6A/nostruct-align/1aq6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aq6A/nostruct-align/1aq6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aq6A/nostruct-align/1aq6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7679/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.686890 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aqb id: 1aqb alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aqb/nostruct-align/1aqb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aqb/nostruct-align/1aqb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aqb/nostruct-align/1aqb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4788/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.081909 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aqm id: 1aqm alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aqm/nostruct-align/1aqm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aqm/nostruct-align/1aqm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aqm/nostruct-align/1aqm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29488/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.062866 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aqt id: 1aqt alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aqt/nostruct-align/1aqt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aqt/nostruct-align/1aqt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aqt/nostruct-align/1aqt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25645/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.861938 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aquA id: 1aquA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aquA/nostruct-align/1aquA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aquA/nostruct-align/1aquA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aquA/nostruct-align/1aquA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26768/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.824829 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aqzA id: 1aqzA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aqzA/nostruct-align/1aqzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aqzA/nostruct-align/1aqzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aqzA/nostruct-align/1aqzA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15067/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.347900 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aqzB id: 1aqzB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aqzB/nostruct-align/1aqzB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aqzB/nostruct-align/1aqzB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aqzB/nostruct-align/1aqzB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6293/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.359863 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ar0A id: 1ar0A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ar0A/nostruct-align/1ar0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ar0A/nostruct-align/1ar0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ar0A/nostruct-align/1ar0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13965/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.783936 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1arb id: 1arb alignment found: /projects/compbio/experiments/models.97/pdb/1a/1arb/nostruct-align/1arb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1arb/nostruct-align/1arb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1arb/nostruct-align/1arb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25982/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.374878 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ard id: 1ard alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ard/nostruct-align/1ard.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ard/nostruct-align/1ard.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ard/nostruct-align/1ard.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16080/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.753906 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ark id: 1ark alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ark/nostruct-align/1ark.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ark/nostruct-align/1ark.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ark/nostruct-align/1ark.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23529/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.416870 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1art id: 1art alignment found: /projects/compbio/experiments/models.97/pdb/1a/1art/nostruct-align/1art.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1art/nostruct-align/1art.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1art/nostruct-align/1art.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4132/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.886963 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aru id: 1aru alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aru/nostruct-align/1aru.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aru/nostruct-align/1aru.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aru/nostruct-align/1aru.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32250/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.693848 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1arv id: 1arv alignment found: /projects/compbio/experiments/models.97/pdb/1a/1arv/nostruct-align/1arv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1arv/nostruct-align/1arv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1arv/nostruct-align/1arv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10937/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.693848 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1arzC id: 1arzC alignment found: /projects/compbio/experiments/models.97/pdb/1a/1arzC/nostruct-align/1arzC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1arzC/nostruct-align/1arzC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1arzC/nostruct-align/1arzC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32436/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.161865 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1as4B id: 1as4B alignment found: /projects/compbio/experiments/models.97/pdb/1a/1as4B/nostruct-align/1as4B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1as4B/nostruct-align/1as4B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1as4B/nostruct-align/1as4B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32617/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.216919 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1as8A id: 1as8A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1as8A/nostruct-align/1as8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1as8A/nostruct-align/1as8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1as8A/nostruct-align/1as8A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23131/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.742798 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ash id: 1ash alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ash/nostruct-align/1ash.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ash/nostruct-align/1ash.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ash/nostruct-align/1ash.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8232/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.773804 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ass id: 1ass alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ass/nostruct-align/1ass.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ass/nostruct-align/1ass.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ass/nostruct-align/1ass.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16565/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.079956 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ast id: 1ast alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ast/nostruct-align/1ast.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ast/nostruct-align/1ast.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ast/nostruct-align/1ast.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19215/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.776978 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1asu id: 1asu alignment found: /projects/compbio/experiments/models.97/pdb/1a/1asu/nostruct-align/1asu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1asu/nostruct-align/1asu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1asu/nostruct-align/1asu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7184/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.449951 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1asx id: 1asx alignment found: /projects/compbio/experiments/models.97/pdb/1a/1asx/nostruct-align/1asx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1asx/nostruct-align/1asx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1asx/nostruct-align/1asx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1416/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.153931 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1asyA id: 1asyA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1asyA/nostruct-align/1asyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1asyA/nostruct-align/1asyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1asyA/nostruct-align/1asyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32595/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.763916 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1asyA_1 id: 1asyA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1asyA_1/nostruct-align/1asyA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1asyA_1/nostruct-align/1asyA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1asyA_1/nostruct-align/1asyA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4662/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.977905 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1asyA_2 id: 1asyA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1asyA_2/nostruct-align/1asyA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1asyA_2/nostruct-align/1asyA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1asyA_2/nostruct-align/1asyA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30619/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.997803 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aszB id: 1aszB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aszB/nostruct-align/1aszB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aszB/nostruct-align/1aszB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aszB/nostruct-align/1aszB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9904/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.773804 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1at0 id: 1at0 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1at0/nostruct-align/1at0.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1at0/nostruct-align/1at0.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1at0/nostruct-align/1at0.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30016/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.770874 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1at3A id: 1at3A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1at3A/nostruct-align/1at3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1at3A/nostruct-align/1at3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1at3A/nostruct-align/1at3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24313/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.398804 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ata id: 1ata alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ata/nostruct-align/1ata.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ata/nostruct-align/1ata.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ata/nostruct-align/1ata.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18154/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.565796 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1atg id: 1atg alignment found: /projects/compbio/experiments/models.97/pdb/1a/1atg/nostruct-align/1atg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1atg/nostruct-align/1atg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1atg/nostruct-align/1atg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2665/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.244873 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1atiA id: 1atiA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1atiA/nostruct-align/1atiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1atiA/nostruct-align/1atiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1atiA/nostruct-align/1atiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8065/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.146851 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1atiB id: 1atiB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1atiB/nostruct-align/1atiB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1atiB/nostruct-align/1atiB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1atiB/nostruct-align/1atiB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1866/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.659912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1atlA id: 1atlA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1atlA/nostruct-align/1atlA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1atlA/nostruct-align/1atlA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1atlA/nostruct-align/1atlA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30665/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.277832 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1atx id: 1atx alignment found: /projects/compbio/experiments/models.97/pdb/1a/1atx/nostruct-align/1atx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1atx/nostruct-align/1atx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1atx/nostruct-align/1atx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8668/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.580933 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aty id: 1aty alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aty/nostruct-align/1aty.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aty/nostruct-align/1aty.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aty/nostruct-align/1aty.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10408/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.496826 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1atzA id: 1atzA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1atzA/nostruct-align/1atzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1atzA/nostruct-align/1atzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1atzA/nostruct-align/1atzA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1233/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.941895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1atzB id: 1atzB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1atzB/nostruct-align/1atzB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1atzB/nostruct-align/1atzB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1atzB/nostruct-align/1atzB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15897/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.733887 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1au7A id: 1au7A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1au7A/nostruct-align/1au7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1au7A/nostruct-align/1au7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1au7A/nostruct-align/1au7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9876/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.699951 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aua id: 1aua alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aua/nostruct-align/1aua.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aua/nostruct-align/1aua.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aua/nostruct-align/1aua.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1107/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.208862 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aub id: 1aub alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aub/nostruct-align/1aub.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aub/nostruct-align/1aub.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aub/nostruct-align/1aub.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18190/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.269897 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1augA id: 1augA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1augA/nostruct-align/1augA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1augA/nostruct-align/1augA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1augA/nostruct-align/1augA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11823/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.113892 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1auiA id: 1auiA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auiA/nostruct-align/1auiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auiA/nostruct-align/1auiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1auiA/nostruct-align/1auiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31186/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.454956 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1auiB id: 1auiB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auiB/nostruct-align/1auiB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auiB/nostruct-align/1auiB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1auiB/nostruct-align/1auiB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18755/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.434814 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1auk id: 1auk alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auk/nostruct-align/1auk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auk/nostruct-align/1auk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1auk/nostruct-align/1auk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25173/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.702881 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1auoA id: 1auoA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auoA/nostruct-align/1auoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auoA/nostruct-align/1auoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1auoA/nostruct-align/1auoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22207/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.169922 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1auq id: 1auq alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auq/nostruct-align/1auq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auq/nostruct-align/1auq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1auq/nostruct-align/1auq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22732/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.404907 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aurA id: 1aurA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aurA/nostruct-align/1aurA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aurA/nostruct-align/1aurA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aurA/nostruct-align/1aurA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14781/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.641846 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1auuA id: 1auuA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auuA/nostruct-align/1auuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auuA/nostruct-align/1auuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1auuA/nostruct-align/1auuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28964/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.406982 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1auvA id: 1auvA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auvA/nostruct-align/1auvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auvA/nostruct-align/1auvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1auvA/nostruct-align/1auvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21108/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.750854 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1auwA id: 1auwA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auwA/nostruct-align/1auwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auwA/nostruct-align/1auwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1auwA/nostruct-align/1auwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27687/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.272827 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1auyA id: 1auyA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auyA/nostruct-align/1auyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auyA/nostruct-align/1auyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1auyA/nostruct-align/1auyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27990/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.833862 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1auz id: 1auz alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auz/nostruct-align/1auz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auz/nostruct-align/1auz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1auz/nostruct-align/1auz.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20458/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.647949 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1av1A id: 1av1A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1av1A/nostruct-align/1av1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1av1A/nostruct-align/1av1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1av1A/nostruct-align/1av1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28599/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.449951 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1avaC id: 1avaC alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avaC/nostruct-align/1avaC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avaC/nostruct-align/1avaC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1avaC/nostruct-align/1avaC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7953/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.480957 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1avc id: 1avc alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avc/nostruct-align/1avc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avc/nostruct-align/1avc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1avc/nostruct-align/1avc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18259/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.848877 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1avgI id: 1avgI alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avgI/nostruct-align/1avgI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avgI/nostruct-align/1avgI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1avgI/nostruct-align/1avgI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21883/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.563843 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1avmA id: 1avmA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avmA/nostruct-align/1avmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avmA/nostruct-align/1avmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1avmA/nostruct-align/1avmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25598/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.256836 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1avoA id: 1avoA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avoA/nostruct-align/1avoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avoA/nostruct-align/1avoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1avoA/nostruct-align/1avoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-772/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.340820 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1avoB id: 1avoB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avoB/nostruct-align/1avoB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avoB/nostruct-align/1avoB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1avoB/nostruct-align/1avoB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12142/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.185913 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1avpA id: 1avpA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avpA/nostruct-align/1avpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avpA/nostruct-align/1avpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1avpA/nostruct-align/1avpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10151/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.569946 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1avqA id: 1avqA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avqA/nostruct-align/1avqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avqA/nostruct-align/1avqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1avqA/nostruct-align/1avqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10185/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.156860 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1avwB id: 1avwB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avwB/nostruct-align/1avwB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avwB/nostruct-align/1avwB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1avwB/nostruct-align/1avwB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21339/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.455933 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1avyB id: 1avyB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avyB/nostruct-align/1avyB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avyB/nostruct-align/1avyB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1avyB/nostruct-align/1avyB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16529/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.950928 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1avyC id: 1avyC alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avyC/nostruct-align/1avyC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avyC/nostruct-align/1avyC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1avyC/nostruct-align/1avyC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17579/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.346924 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aw0 id: 1aw0 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aw0/nostruct-align/1aw0.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aw0/nostruct-align/1aw0.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aw0/nostruct-align/1aw0.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25711/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.823853 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aw5 id: 1aw5 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aw5/nostruct-align/1aw5.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aw5/nostruct-align/1aw5.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aw5/nostruct-align/1aw5.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22607/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.319824 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aw7A id: 1aw7A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aw7A/nostruct-align/1aw7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aw7A/nostruct-align/1aw7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aw7A/nostruct-align/1aw7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14902/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.656860 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aw8B id: 1aw8B alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aw8B/nostruct-align/1aw8B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aw8B/nostruct-align/1aw8B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aw8B/nostruct-align/1aw8B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32148/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.612915 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aw8E id: 1aw8E alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aw8E/nostruct-align/1aw8E.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aw8E/nostruct-align/1aw8E.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aw8E/nostruct-align/1aw8E.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26120/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.582886 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1awcA id: 1awcA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1awcA/nostruct-align/1awcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1awcA/nostruct-align/1awcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1awcA/nostruct-align/1awcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-130/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.321899 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1awd id: 1awd alignment found: /projects/compbio/experiments/models.97/pdb/1a/1awd/nostruct-align/1awd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1awd/nostruct-align/1awd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1awd/nostruct-align/1awd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17074/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.932861 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1awe id: 1awe alignment found: /projects/compbio/experiments/models.97/pdb/1a/1awe/nostruct-align/1awe.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1awe/nostruct-align/1awe.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1awe/nostruct-align/1awe.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16131/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.777832 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1awj id: 1awj alignment found: /projects/compbio/experiments/models.97/pdb/1a/1awj/nostruct-align/1awj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1awj/nostruct-align/1awj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1awj/nostruct-align/1awj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31603/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.614868 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1awo id: 1awo alignment found: /projects/compbio/experiments/models.97/pdb/1a/1awo/nostruct-align/1awo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1awo/nostruct-align/1awo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1awo/nostruct-align/1awo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25943/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.291870 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1awsA id: 1awsA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1awsA/nostruct-align/1awsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1awsA/nostruct-align/1awsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1awsA/nostruct-align/1awsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5925/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.084961 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ax0 id: 1ax0 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ax0/nostruct-align/1ax0.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ax0/nostruct-align/1ax0.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ax0/nostruct-align/1ax0.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19165/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.259888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ax4A id: 1ax4A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ax4A/nostruct-align/1ax4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ax4A/nostruct-align/1ax4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ax4A/nostruct-align/1ax4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6710/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.738892 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ax8 id: 1ax8 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ax8/nostruct-align/1ax8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ax8/nostruct-align/1ax8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ax8/nostruct-align/1ax8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26276/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.360840 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1axh id: 1axh alignment found: /projects/compbio/experiments/models.97/pdb/1a/1axh/nostruct-align/1axh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1axh/nostruct-align/1axh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1axh/nostruct-align/1axh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7926/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.201904 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1axiB id: 1axiB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1axiB/nostruct-align/1axiB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1axiB/nostruct-align/1axiB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1axiB/nostruct-align/1axiB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22432/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.372925 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1axj id: 1axj alignment found: /projects/compbio/experiments/models.97/pdb/1a/1axj/nostruct-align/1axj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1axj/nostruct-align/1axj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1axj/nostruct-align/1axj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27950/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.102905 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1axkA id: 1axkA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1axkA/nostruct-align/1axkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1axkA/nostruct-align/1axkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1axkA/nostruct-align/1axkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26573/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.555908 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1axn id: 1axn alignment found: /projects/compbio/experiments/models.97/pdb/1a/1axn/nostruct-align/1axn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1axn/nostruct-align/1axn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1axn/nostruct-align/1axn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19708/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.254883 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ay7B id: 1ay7B alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ay7B/nostruct-align/1ay7B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ay7B/nostruct-align/1ay7B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ay7B/nostruct-align/1ay7B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5895/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.623901 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aye id: 1aye alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aye/nostruct-align/1aye.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aye/nostruct-align/1aye.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aye/nostruct-align/1aye.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12101/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.765869 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ayfA id: 1ayfA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ayfA/nostruct-align/1ayfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ayfA/nostruct-align/1ayfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ayfA/nostruct-align/1ayfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3184/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.057861 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ayfB id: 1ayfB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ayfB/nostruct-align/1ayfB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ayfB/nostruct-align/1ayfB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ayfB/nostruct-align/1ayfB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23654/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.242920 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ayj id: 1ayj alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ayj/nostruct-align/1ayj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ayj/nostruct-align/1ayj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ayj/nostruct-align/1ayj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5261/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.263794 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ayl id: 1ayl alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ayl/nostruct-align/1ayl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ayl/nostruct-align/1ayl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ayl/nostruct-align/1ayl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22350/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.439819 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aym1 id: 1aym1 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aym1/nostruct-align/1aym1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aym1/nostruct-align/1aym1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aym1/nostruct-align/1aym1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1179/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.635864 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aym2 id: 1aym2 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aym2/nostruct-align/1aym2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aym2/nostruct-align/1aym2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aym2/nostruct-align/1aym2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27801/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.805908 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1aym3 id: 1aym3 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aym3/nostruct-align/1aym3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aym3/nostruct-align/1aym3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aym3/nostruct-align/1aym3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4505/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.205933 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ayoA id: 1ayoA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ayoA/nostruct-align/1ayoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ayoA/nostruct-align/1ayoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ayoA/nostruct-align/1ayoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25640/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.217896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ayx id: 1ayx alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ayx/nostruct-align/1ayx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ayx/nostruct-align/1ayx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ayx/nostruct-align/1ayx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15425/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.772827 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ayyA id: 1ayyA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ayyA/nostruct-align/1ayyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ayyA/nostruct-align/1ayyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ayyA/nostruct-align/1ayyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14898/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.448975 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1az9 id: 1az9 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1az9/nostruct-align/1az9.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1az9/nostruct-align/1az9.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1az9/nostruct-align/1az9.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24022/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.622925 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1azh id: 1azh alignment found: /projects/compbio/experiments/models.97/pdb/1a/1azh/nostruct-align/1azh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1azh/nostruct-align/1azh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1azh/nostruct-align/1azh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4203/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.934937 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1azo id: 1azo alignment found: /projects/compbio/experiments/models.97/pdb/1a/1azo/nostruct-align/1azo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1azo/nostruct-align/1azo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1azo/nostruct-align/1azo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19677/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.884888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1azpA id: 1azpA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1azpA/nostruct-align/1azpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1azpA/nostruct-align/1azpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1azpA/nostruct-align/1azpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25322/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.841919 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1azqA id: 1azqA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1azqA/nostruct-align/1azqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1azqA/nostruct-align/1azqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1azqA/nostruct-align/1azqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31611/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.841919 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1azsA id: 1azsA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1azsA/nostruct-align/1azsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1azsA/nostruct-align/1azsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1azsA/nostruct-align/1azsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20533/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.169922 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b04A id: 1b04A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b04A/nostruct-align/1b04A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b04A/nostruct-align/1b04A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b04A/nostruct-align/1b04A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2880/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.624878 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b0b id: 1b0b alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b0b/nostruct-align/1b0b.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b0b/nostruct-align/1b0b.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b0b/nostruct-align/1b0b.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29512/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.081909 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b0nA id: 1b0nA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b0nA/nostruct-align/1b0nA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b0nA/nostruct-align/1b0nA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b0nA/nostruct-align/1b0nA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29938/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.756836 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b0nB id: 1b0nB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b0nB/nostruct-align/1b0nB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b0nB/nostruct-align/1b0nB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b0nB/nostruct-align/1b0nB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1865/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.402832 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b0uA id: 1b0uA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b0uA/nostruct-align/1b0uA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b0uA/nostruct-align/1b0uA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b0uA/nostruct-align/1b0uA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17844/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.785889 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b0y id: 1b0y alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b0y/nostruct-align/1b0y.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b0y/nostruct-align/1b0y.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b0y/nostruct-align/1b0y.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10809/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.094849 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b0yA id: 1b0yA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b0yA/nostruct-align/1b0yA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b0yA/nostruct-align/1b0yA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b0yA/nostruct-align/1b0yA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6264/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.883911 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b10A id: 1b10A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b10A/nostruct-align/1b10A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b10A/nostruct-align/1b10A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b10A/nostruct-align/1b10A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8132/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.675903 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b12A id: 1b12A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b12A/nostruct-align/1b12A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b12A/nostruct-align/1b12A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b12A/nostruct-align/1b12A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28642/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.571899 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b16A id: 1b16A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b16A/nostruct-align/1b16A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b16A/nostruct-align/1b16A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b16A/nostruct-align/1b16A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11649/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.010010 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b1cA id: 1b1cA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b1cA/nostruct-align/1b1cA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b1cA/nostruct-align/1b1cA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b1cA/nostruct-align/1b1cA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7334/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.179932 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b20A id: 1b20A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b20A/nostruct-align/1b20A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b20A/nostruct-align/1b20A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b20A/nostruct-align/1b20A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21837/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.691895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b22A id: 1b22A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b22A/nostruct-align/1b22A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b22A/nostruct-align/1b22A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b22A/nostruct-align/1b22A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10572/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.339844 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b24A id: 1b24A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b24A/nostruct-align/1b24A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b24A/nostruct-align/1b24A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b24A/nostruct-align/1b24A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17882/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.813843 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b25A id: 1b25A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b25A/nostruct-align/1b25A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b25A/nostruct-align/1b25A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b25A/nostruct-align/1b25A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29362/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.200928 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b2iA id: 1b2iA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b2iA/nostruct-align/1b2iA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b2iA/nostruct-align/1b2iA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b2iA/nostruct-align/1b2iA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23654/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.125977 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b2nA id: 1b2nA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b2nA/nostruct-align/1b2nA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b2nA/nostruct-align/1b2nA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b2nA/nostruct-align/1b2nA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4609/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.655884 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b2nB id: 1b2nB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b2nB/nostruct-align/1b2nB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b2nB/nostruct-align/1b2nB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b2nB/nostruct-align/1b2nB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19046/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.274902 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b2pA id: 1b2pA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b2pA/nostruct-align/1b2pA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b2pA/nostruct-align/1b2pA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b2pA/nostruct-align/1b2pA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7105/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.101929 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b2sD id: 1b2sD alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b2sD/nostruct-align/1b2sD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b2sD/nostruct-align/1b2sD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b2sD/nostruct-align/1b2sD.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-15426/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.553955 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b2vA id: 1b2vA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b2vA/nostruct-align/1b2vA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b2vA/nostruct-align/1b2vA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b2vA/nostruct-align/1b2vA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-389/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.544922 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b33N id: 1b33N alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b33N/nostruct-align/1b33N.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b33N/nostruct-align/1b33N.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b33N/nostruct-align/1b33N.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17977/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.160889 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b34B id: 1b34B alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b34B/nostruct-align/1b34B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b34B/nostruct-align/1b34B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b34B/nostruct-align/1b34B.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26369/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.043823 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b35A id: 1b35A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b35A/nostruct-align/1b35A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b35A/nostruct-align/1b35A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b35A/nostruct-align/1b35A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5398/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.267822 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b35B id: 1b35B alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b35B/nostruct-align/1b35B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b35B/nostruct-align/1b35B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b35B/nostruct-align/1b35B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10531/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.373901 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b35C id: 1b35C alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b35C/nostruct-align/1b35C.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b35C/nostruct-align/1b35C.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b35C/nostruct-align/1b35C.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27549/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.047974 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b35D id: 1b35D alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b35D/nostruct-align/1b35D.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b35D/nostruct-align/1b35D.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b35D/nostruct-align/1b35D.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11760/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.490845 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b37B id: 1b37B alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b37B/nostruct-align/1b37B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b37B/nostruct-align/1b37B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b37B/nostruct-align/1b37B.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16134/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.223877 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b3aA id: 1b3aA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3aA/nostruct-align/1b3aA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3aA/nostruct-align/1b3aA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b3aA/nostruct-align/1b3aA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27017/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.904907 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b3eA id: 1b3eA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3eA/nostruct-align/1b3eA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3eA/nostruct-align/1b3eA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b3eA/nostruct-align/1b3eA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21094/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.863892 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b3jA id: 1b3jA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3jA/nostruct-align/1b3jA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3jA/nostruct-align/1b3jA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b3jA/nostruct-align/1b3jA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10841/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.435913 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b3mA id: 1b3mA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3mA/nostruct-align/1b3mA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3mA/nostruct-align/1b3mA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b3mA/nostruct-align/1b3mA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30858/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -19.405884 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b3nA id: 1b3nA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3nA/nostruct-align/1b3nA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3nA/nostruct-align/1b3nA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b3nA/nostruct-align/1b3nA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6140/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.328979 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b3qA id: 1b3qA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3qA/nostruct-align/1b3qA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3qA/nostruct-align/1b3qA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b3qA/nostruct-align/1b3qA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25403/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.253906 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b3rA id: 1b3rA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3rA/nostruct-align/1b3rA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3rA/nostruct-align/1b3rA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b3rA/nostruct-align/1b3rA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1244/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.386963 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b3tA id: 1b3tA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3tA/nostruct-align/1b3tA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3tA/nostruct-align/1b3tA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b3tA/nostruct-align/1b3tA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11856/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.147949 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b3uA id: 1b3uA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3uA/nostruct-align/1b3uA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3uA/nostruct-align/1b3uA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b3uA/nostruct-align/1b3uA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10344/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.737915 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b47A id: 1b47A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b47A/nostruct-align/1b47A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b47A/nostruct-align/1b47A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b47A/nostruct-align/1b47A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1242/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.046875 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b4aA id: 1b4aA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4aA/nostruct-align/1b4aA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4aA/nostruct-align/1b4aA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b4aA/nostruct-align/1b4aA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20818/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.461914 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b4cA id: 1b4cA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4cA/nostruct-align/1b4cA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4cA/nostruct-align/1b4cA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b4cA/nostruct-align/1b4cA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7750/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.774902 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b4eA id: 1b4eA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4eA/nostruct-align/1b4eA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4eA/nostruct-align/1b4eA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b4eA/nostruct-align/1b4eA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5909/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.982910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b4fA id: 1b4fA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4fA/nostruct-align/1b4fA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4fA/nostruct-align/1b4fA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b4fA/nostruct-align/1b4fA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30767/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.088867 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b4fG id: 1b4fG alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4fG/nostruct-align/1b4fG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4fG/nostruct-align/1b4fG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b4fG/nostruct-align/1b4fG.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28113/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.615967 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b4kA id: 1b4kA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4kA/nostruct-align/1b4kA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4kA/nostruct-align/1b4kA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b4kA/nostruct-align/1b4kA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5257/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.385864 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b4r id: 1b4r alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4r/nostruct-align/1b4r.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4r/nostruct-align/1b4r.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b4r/nostruct-align/1b4r.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5455/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.356934 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b4rA id: 1b4rA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4rA/nostruct-align/1b4rA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4rA/nostruct-align/1b4rA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b4rA/nostruct-align/1b4rA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1280/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.153931 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b4vA id: 1b4vA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4vA/nostruct-align/1b4vA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4vA/nostruct-align/1b4vA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b4vA/nostruct-align/1b4vA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15770/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.015869 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b54 id: 1b54 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b54/nostruct-align/1b54.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b54/nostruct-align/1b54.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b54/nostruct-align/1b54.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27248/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.256958 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b5eA id: 1b5eA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b5eA/nostruct-align/1b5eA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b5eA/nostruct-align/1b5eA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b5eA/nostruct-align/1b5eA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4160/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.033936 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b5fA id: 1b5fA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b5fA/nostruct-align/1b5fA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b5fA/nostruct-align/1b5fA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b5fA/nostruct-align/1b5fA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4322/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.345947 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b5fB id: 1b5fB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b5fB/nostruct-align/1b5fB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b5fB/nostruct-align/1b5fB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b5fB/nostruct-align/1b5fB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4179/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.198853 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b5l id: 1b5l alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b5l/nostruct-align/1b5l.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b5l/nostruct-align/1b5l.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b5l/nostruct-align/1b5l.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31931/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.866821 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b5qA id: 1b5qA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b5qA/nostruct-align/1b5qA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b5qA/nostruct-align/1b5qA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b5qA/nostruct-align/1b5qA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5425/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.448853 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b5tA id: 1b5tA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b5tA/nostruct-align/1b5tA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b5tA/nostruct-align/1b5tA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b5tA/nostruct-align/1b5tA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31638/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.822998 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b63A id: 1b63A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b63A/nostruct-align/1b63A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b63A/nostruct-align/1b63A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b63A/nostruct-align/1b63A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3468/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.731812 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b64 id: 1b64 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b64/nostruct-align/1b64.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b64/nostruct-align/1b64.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b64/nostruct-align/1b64.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19452/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.105957 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b65A id: 1b65A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b65A/nostruct-align/1b65A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b65A/nostruct-align/1b65A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b65A/nostruct-align/1b65A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8527/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.853882 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b66A id: 1b66A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b66A/nostruct-align/1b66A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b66A/nostruct-align/1b66A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b66A/nostruct-align/1b66A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22944/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.140991 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b67A id: 1b67A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b67A/nostruct-align/1b67A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b67A/nostruct-align/1b67A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b67A/nostruct-align/1b67A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12492/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.926880 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b6a id: 1b6a alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b6a/nostruct-align/1b6a.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b6a/nostruct-align/1b6a.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b6a/nostruct-align/1b6a.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13494/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.237915 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b6cB id: 1b6cB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b6cB/nostruct-align/1b6cB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b6cB/nostruct-align/1b6cB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b6cB/nostruct-align/1b6cB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12662/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.941895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b6e id: 1b6e alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b6e/nostruct-align/1b6e.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b6e/nostruct-align/1b6e.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b6e/nostruct-align/1b6e.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26499/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.891968 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b6g id: 1b6g alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b6g/nostruct-align/1b6g.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b6g/nostruct-align/1b6g.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b6g/nostruct-align/1b6g.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27046/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.557861 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b6rA id: 1b6rA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b6rA/nostruct-align/1b6rA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b6rA/nostruct-align/1b6rA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b6rA/nostruct-align/1b6rA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11498/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.534790 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b6tA id: 1b6tA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b6tA/nostruct-align/1b6tA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b6tA/nostruct-align/1b6tA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b6tA/nostruct-align/1b6tA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14938/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.193848 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b6u id: 1b6u alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b6u/nostruct-align/1b6u.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b6u/nostruct-align/1b6u.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b6u/nostruct-align/1b6u.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23536/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.779907 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b71A id: 1b71A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b71A/nostruct-align/1b71A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b71A/nostruct-align/1b71A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b71A/nostruct-align/1b71A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18901/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.835938 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b72A id: 1b72A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b72A/nostruct-align/1b72A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b72A/nostruct-align/1b72A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b72A/nostruct-align/1b72A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15458/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.329956 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b73A id: 1b73A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b73A/nostruct-align/1b73A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b73A/nostruct-align/1b73A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b73A/nostruct-align/1b73A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10498/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.461914 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b74A id: 1b74A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b74A/nostruct-align/1b74A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b74A/nostruct-align/1b74A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b74A/nostruct-align/1b74A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16870/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.461914 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b77A id: 1b77A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b77A/nostruct-align/1b77A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b77A/nostruct-align/1b77A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b77A/nostruct-align/1b77A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21187/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.189941 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b78A id: 1b78A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b78A/nostruct-align/1b78A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b78A/nostruct-align/1b78A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b78A/nostruct-align/1b78A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13766/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.310913 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b79A id: 1b79A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b79A/nostruct-align/1b79A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b79A/nostruct-align/1b79A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b79A/nostruct-align/1b79A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5642/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.500854 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b7bA id: 1b7bA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b7bA/nostruct-align/1b7bA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b7bA/nostruct-align/1b7bA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b7bA/nostruct-align/1b7bA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22764/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.482910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b7dA id: 1b7dA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b7dA/nostruct-align/1b7dA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b7dA/nostruct-align/1b7dA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b7dA/nostruct-align/1b7dA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30315/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.697876 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b7eA id: 1b7eA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b7eA/nostruct-align/1b7eA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b7eA/nostruct-align/1b7eA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b7eA/nostruct-align/1b7eA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6933/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.756958 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b7fA id: 1b7fA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b7fA/nostruct-align/1b7fA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b7fA/nostruct-align/1b7fA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b7fA/nostruct-align/1b7fA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18966/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.132935 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b7gO id: 1b7gO alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b7gO/nostruct-align/1b7gO.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b7gO/nostruct-align/1b7gO.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b7gO/nostruct-align/1b7gO.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12118/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.771851 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b87A id: 1b87A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b87A/nostruct-align/1b87A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b87A/nostruct-align/1b87A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b87A/nostruct-align/1b87A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21548/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.041992 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b89A id: 1b89A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b89A/nostruct-align/1b89A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b89A/nostruct-align/1b89A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b89A/nostruct-align/1b89A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26341/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.654907 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b8aA id: 1b8aA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8aA/nostruct-align/1b8aA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8aA/nostruct-align/1b8aA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8aA/nostruct-align/1b8aA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18890/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.328857 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b8bA id: 1b8bA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8bA/nostruct-align/1b8bA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8bA/nostruct-align/1b8bA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8bA/nostruct-align/1b8bA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10060/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.230957 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b8dA id: 1b8dA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8dA/nostruct-align/1b8dA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8dA/nostruct-align/1b8dA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8dA/nostruct-align/1b8dA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15098/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.049927 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b8fA id: 1b8fA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8fA/nostruct-align/1b8fA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8fA/nostruct-align/1b8fA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8fA/nostruct-align/1b8fA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5069/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.036987 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b8gA id: 1b8gA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8gA/nostruct-align/1b8gA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8gA/nostruct-align/1b8gA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8gA/nostruct-align/1b8gA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15866/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.176880 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b8jA id: 1b8jA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8jA/nostruct-align/1b8jA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8jA/nostruct-align/1b8jA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8jA/nostruct-align/1b8jA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2209/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.260986 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b8kA id: 1b8kA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8kA/nostruct-align/1b8kA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8kA/nostruct-align/1b8kA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8kA/nostruct-align/1b8kA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5764/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.108887 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b8oA id: 1b8oA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8oA/nostruct-align/1b8oA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8oA/nostruct-align/1b8oA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8oA/nostruct-align/1b8oA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22792/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.874878 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b8qA id: 1b8qA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8qA/nostruct-align/1b8qA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8qA/nostruct-align/1b8qA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8qA/nostruct-align/1b8qA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5662/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.009888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b8sA id: 1b8sA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8sA/nostruct-align/1b8sA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8sA/nostruct-align/1b8sA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8sA/nostruct-align/1b8sA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12511/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.156982 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b8tA id: 1b8tA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8tA/nostruct-align/1b8tA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8tA/nostruct-align/1b8tA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8tA/nostruct-align/1b8tA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22085/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.352905 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b8wA id: 1b8wA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8wA/nostruct-align/1b8wA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8wA/nostruct-align/1b8wA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8wA/nostruct-align/1b8wA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25272/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.604980 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b8xA id: 1b8xA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8xA/nostruct-align/1b8xA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8xA/nostruct-align/1b8xA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8xA/nostruct-align/1b8xA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21340/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.585938 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b91A id: 1b91A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b91A/nostruct-align/1b91A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b91A/nostruct-align/1b91A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b91A/nostruct-align/1b91A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1103/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.774902 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b93A id: 1b93A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b93A/nostruct-align/1b93A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b93A/nostruct-align/1b93A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b93A/nostruct-align/1b93A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10348/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.013916 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b93B id: 1b93B alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b93B/nostruct-align/1b93B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b93B/nostruct-align/1b93B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b93B/nostruct-align/1b93B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23627/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.044922 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b9dA id: 1b9dA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9dA/nostruct-align/1b9dA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9dA/nostruct-align/1b9dA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b9dA/nostruct-align/1b9dA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-299/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.130859 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b9hA id: 1b9hA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9hA/nostruct-align/1b9hA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9hA/nostruct-align/1b9hA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b9hA/nostruct-align/1b9hA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9126/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.779907 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b9lA id: 1b9lA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9lA/nostruct-align/1b9lA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9lA/nostruct-align/1b9lA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b9lA/nostruct-align/1b9lA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31815/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.938843 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b9mA id: 1b9mA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9mA/nostruct-align/1b9mA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9mA/nostruct-align/1b9mA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b9mA/nostruct-align/1b9mA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11162/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.760864 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b9oA id: 1b9oA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9oA/nostruct-align/1b9oA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9oA/nostruct-align/1b9oA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b9oA/nostruct-align/1b9oA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27252/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.466919 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b9pA id: 1b9pA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9pA/nostruct-align/1b9pA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9pA/nostruct-align/1b9pA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b9pA/nostruct-align/1b9pA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10106/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.366943 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b9uA id: 1b9uA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9uA/nostruct-align/1b9uA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9uA/nostruct-align/1b9uA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b9uA/nostruct-align/1b9uA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27775/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.215820 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b9wA id: 1b9wA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9wA/nostruct-align/1b9wA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9wA/nostruct-align/1b9wA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b9wA/nostruct-align/1b9wA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31444/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.247925 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b9xB id: 1b9xB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9xB/nostruct-align/1b9xB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9xB/nostruct-align/1b9xB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b9xB/nostruct-align/1b9xB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16797/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.580933 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b9yC id: 1b9yC alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9yC/nostruct-align/1b9yC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9yC/nostruct-align/1b9yC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b9yC/nostruct-align/1b9yC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2062/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.154907 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1b9zA id: 1b9zA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9zA/nostruct-align/1b9zA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9zA/nostruct-align/1b9zA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b9zA/nostruct-align/1b9zA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31182/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.846924 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ba1 id: 1ba1 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1ba1/nostruct-align/1ba1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1ba1/nostruct-align/1ba1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1ba1/nostruct-align/1ba1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18315/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.351929 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ba4 id: 1ba4 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1ba4/nostruct-align/1ba4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1ba4/nostruct-align/1ba4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1ba4/nostruct-align/1ba4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27578/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.984985 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ba5 id: 1ba5 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1ba5/nostruct-align/1ba5.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1ba5/nostruct-align/1ba5.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1ba5/nostruct-align/1ba5.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7894/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.046875 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ba6 id: 1ba6 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1ba6/nostruct-align/1ba6.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1ba6/nostruct-align/1ba6.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1ba6/nostruct-align/1ba6.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1589/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.996948 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1babA id: 1babA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1babA/nostruct-align/1babA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1babA/nostruct-align/1babA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1babA/nostruct-align/1babA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15943/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.906982 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1babB id: 1babB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1babB/nostruct-align/1babB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1babB/nostruct-align/1babB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1babB/nostruct-align/1babB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22166/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.391846 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bag id: 1bag alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bag/nostruct-align/1bag.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bag/nostruct-align/1bag.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bag/nostruct-align/1bag.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12436/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.620972 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bak id: 1bak alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bak/nostruct-align/1bak.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bak/nostruct-align/1bak.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bak/nostruct-align/1bak.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28179/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.145874 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bal id: 1bal alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bal/nostruct-align/1bal.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bal/nostruct-align/1bal.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bal/nostruct-align/1bal.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21134/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.208862 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bam id: 1bam alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bam/nostruct-align/1bam.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bam/nostruct-align/1bam.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bam/nostruct-align/1bam.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10736/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.094971 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1baq id: 1baq alignment found: /projects/compbio/experiments/models.97/pdb/1b/1baq/nostruct-align/1baq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1baq/nostruct-align/1baq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1baq/nostruct-align/1baq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19754/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.244873 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bax id: 1bax alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bax/nostruct-align/1bax.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bax/nostruct-align/1bax.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bax/nostruct-align/1bax.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15887/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.062012 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bazA id: 1bazA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bazA/nostruct-align/1bazA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bazA/nostruct-align/1bazA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bazA/nostruct-align/1bazA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32285/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.742920 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bb1A id: 1bb1A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bb1A/nostruct-align/1bb1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bb1A/nostruct-align/1bb1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bb1A/nostruct-align/1bb1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24931/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.202881 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bb9 id: 1bb9 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bb9/nostruct-align/1bb9.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bb9/nostruct-align/1bb9.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bb9/nostruct-align/1bb9.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30369/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.002808 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bba id: 1bba alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bba/nostruct-align/1bba.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bba/nostruct-align/1bba.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bba/nostruct-align/1bba.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31342/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.857788 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bbg id: 1bbg alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bbg/nostruct-align/1bbg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bbg/nostruct-align/1bbg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bbg/nostruct-align/1bbg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8935/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.484863 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bbhA id: 1bbhA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bbhA/nostruct-align/1bbhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bbhA/nostruct-align/1bbhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bbhA/nostruct-align/1bbhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8051/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.872925 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bbl id: 1bbl alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bbl/nostruct-align/1bbl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bbl/nostruct-align/1bbl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bbl/nostruct-align/1bbl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10759/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.864990 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bbo id: 1bbo alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bbo/nostruct-align/1bbo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bbo/nostruct-align/1bbo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bbo/nostruct-align/1bbo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20885/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.633911 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bbo_1 id: 1bbo_1 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bbo_1/nostruct-align/1bbo_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bbo_1/nostruct-align/1bbo_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bbo_1/nostruct-align/1bbo_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15944/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.947876 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bbo_2 id: 1bbo_2 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bbo_2/nostruct-align/1bbo_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bbo_2/nostruct-align/1bbo_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bbo_2/nostruct-align/1bbo_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31489/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.189941 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bbpA id: 1bbpA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bbpA/nostruct-align/1bbpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bbpA/nostruct-align/1bbpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bbpA/nostruct-align/1bbpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14215/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.981934 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bbt1 id: 1bbt1 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bbt1/nostruct-align/1bbt1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bbt1/nostruct-align/1bbt1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bbt1/nostruct-align/1bbt1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13468/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.545898 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bbt3 id: 1bbt3 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bbt3/nostruct-align/1bbt3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bbt3/nostruct-align/1bbt3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bbt3/nostruct-align/1bbt3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1523/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.512939 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bbzA id: 1bbzA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bbzA/nostruct-align/1bbzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bbzA/nostruct-align/1bbzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bbzA/nostruct-align/1bbzA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24277/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.286865 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bc4 id: 1bc4 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bc4/nostruct-align/1bc4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bc4/nostruct-align/1bc4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bc4/nostruct-align/1bc4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28942/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.889893 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bc5A id: 1bc5A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bc5A/nostruct-align/1bc5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bc5A/nostruct-align/1bc5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bc5A/nostruct-align/1bc5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17191/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.451904 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bc8C id: 1bc8C alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bc8C/nostruct-align/1bc8C.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bc8C/nostruct-align/1bc8C.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bc8C/nostruct-align/1bc8C.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14569/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.867920 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bcfA id: 1bcfA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bcfA/nostruct-align/1bcfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bcfA/nostruct-align/1bcfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bcfA/nostruct-align/1bcfA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4825/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.770874 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bco id: 1bco alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bco/nostruct-align/1bco.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bco/nostruct-align/1bco.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bco/nostruct-align/1bco.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3181/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.598999 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bco_1 id: 1bco_1 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bco_1/nostruct-align/1bco_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bco_1/nostruct-align/1bco_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bco_1/nostruct-align/1bco_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16972/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.550903 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bco_2 id: 1bco_2 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bco_2/nostruct-align/1bco_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bco_2/nostruct-align/1bco_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bco_2/nostruct-align/1bco_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23235/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.927856 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bcpA id: 1bcpA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bcpA/nostruct-align/1bcpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bcpA/nostruct-align/1bcpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bcpA/nostruct-align/1bcpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16357/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.941895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bcpB id: 1bcpB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bcpB/nostruct-align/1bcpB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bcpB/nostruct-align/1bcpB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bcpB/nostruct-align/1bcpB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19663/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.352783 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bcpD id: 1bcpD alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bcpD/nostruct-align/1bcpD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bcpD/nostruct-align/1bcpD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bcpD/nostruct-align/1bcpD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6502/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.338867 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bct id: 1bct alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bct/nostruct-align/1bct.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bct/nostruct-align/1bct.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bct/nostruct-align/1bct.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28965/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.969849 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bd0A id: 1bd0A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bd0A/nostruct-align/1bd0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bd0A/nostruct-align/1bd0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bd0A/nostruct-align/1bd0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7011/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.210815 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bd3A id: 1bd3A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bd3A/nostruct-align/1bd3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bd3A/nostruct-align/1bd3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bd3A/nostruct-align/1bd3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4202/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.794922 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bd8 id: 1bd8 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bd8/nostruct-align/1bd8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bd8/nostruct-align/1bd8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bd8/nostruct-align/1bd8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15482/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.287964 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bdb id: 1bdb alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bdb/nostruct-align/1bdb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bdb/nostruct-align/1bdb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bdb/nostruct-align/1bdb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24884/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.813843 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bde id: 1bde alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bde/nostruct-align/1bde.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bde/nostruct-align/1bde.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bde/nostruct-align/1bde.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11915/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.340820 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bdfA id: 1bdfA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bdfA/nostruct-align/1bdfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bdfA/nostruct-align/1bdfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bdfA/nostruct-align/1bdfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19824/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.325928 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bdmA id: 1bdmA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bdmA/nostruct-align/1bdmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bdmA/nostruct-align/1bdmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bdmA/nostruct-align/1bdmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19040/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.564819 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bdmA_1 id: 1bdmA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bdmA_1/nostruct-align/1bdmA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bdmA_1/nostruct-align/1bdmA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bdmA_1/nostruct-align/1bdmA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23881/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.927856 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bdmA_2 id: 1bdmA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bdmA_2/nostruct-align/1bdmA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bdmA_2/nostruct-align/1bdmA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bdmA_2/nostruct-align/1bdmA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3581/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.773926 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bdmB id: 1bdmB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bdmB/nostruct-align/1bdmB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bdmB/nostruct-align/1bdmB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bdmB/nostruct-align/1bdmB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4950/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.107910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bdo id: 1bdo alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bdo/nostruct-align/1bdo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bdo/nostruct-align/1bdo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bdo/nostruct-align/1bdo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-594/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.192871 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bds id: 1bds alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bds/nostruct-align/1bds.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bds/nostruct-align/1bds.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bds/nostruct-align/1bds.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16370/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.406982 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bdyA id: 1bdyA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bdyA/nostruct-align/1bdyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bdyA/nostruct-align/1bdyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bdyA/nostruct-align/1bdyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10293/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.527954 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1be1 id: 1be1 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be1/nostruct-align/1be1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be1/nostruct-align/1be1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1be1/nostruct-align/1be1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13828/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.125854 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1be3A id: 1be3A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3A/nostruct-align/1be3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3A/nostruct-align/1be3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1be3A/nostruct-align/1be3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28692/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.577881 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1be3B id: 1be3B alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3B/nostruct-align/1be3B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3B/nostruct-align/1be3B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1be3B/nostruct-align/1be3B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15216/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.803833 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1be3C id: 1be3C alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3C/nostruct-align/1be3C.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3C/nostruct-align/1be3C.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1be3C/nostruct-align/1be3C.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10517/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.763916 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1be3D id: 1be3D alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3D/nostruct-align/1be3D.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3D/nostruct-align/1be3D.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1be3D/nostruct-align/1be3D.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32275/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.097900 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1be3F id: 1be3F alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3F/nostruct-align/1be3F.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3F/nostruct-align/1be3F.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1be3F/nostruct-align/1be3F.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27541/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.614868 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1be3G id: 1be3G alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3G/nostruct-align/1be3G.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3G/nostruct-align/1be3G.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1be3G/nostruct-align/1be3G.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7579/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.321899 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1be3H id: 1be3H alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3H/nostruct-align/1be3H.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3H/nostruct-align/1be3H.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1be3H/nostruct-align/1be3H.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26313/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.976807 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1be3I id: 1be3I alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3I/nostruct-align/1be3I.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3I/nostruct-align/1be3I.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1be3I/nostruct-align/1be3I.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7775/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.480957 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1be3J id: 1be3J alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3J/nostruct-align/1be3J.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3J/nostruct-align/1be3J.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1be3J/nostruct-align/1be3J.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22852/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.620850 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1be9A id: 1be9A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be9A/nostruct-align/1be9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be9A/nostruct-align/1be9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1be9A/nostruct-align/1be9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19373/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.844971 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bea id: 1bea alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bea/nostruct-align/1bea.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bea/nostruct-align/1bea.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bea/nostruct-align/1bea.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2206/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.308838 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bebA id: 1bebA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bebA/nostruct-align/1bebA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bebA/nostruct-align/1bebA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bebA/nostruct-align/1bebA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10528/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.640991 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bec id: 1bec alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bec/nostruct-align/1bec.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bec/nostruct-align/1bec.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bec/nostruct-align/1bec.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6168/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.818970 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1befA id: 1befA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1befA/nostruct-align/1befA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1befA/nostruct-align/1befA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1befA/nostruct-align/1befA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7086/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.987915 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1behA id: 1behA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1behA/nostruct-align/1behA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1behA/nostruct-align/1behA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1behA/nostruct-align/1behA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31126/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.263916 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1benA id: 1benA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1benA/nostruct-align/1benA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1benA/nostruct-align/1benA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1benA/nostruct-align/1benA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30558/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.019897 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1benB id: 1benB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1benB/nostruct-align/1benB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1benB/nostruct-align/1benB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1benB/nostruct-align/1benB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20303/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.936890 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1beo id: 1beo alignment found: /projects/compbio/experiments/models.97/pdb/1b/1beo/nostruct-align/1beo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1beo/nostruct-align/1beo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1beo/nostruct-align/1beo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17564/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.303833 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bet id: 1bet alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bet/nostruct-align/1bet.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bet/nostruct-align/1bet.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bet/nostruct-align/1bet.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1568/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.129883 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bev1 id: 1bev1 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bev1/nostruct-align/1bev1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bev1/nostruct-align/1bev1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bev1/nostruct-align/1bev1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26846/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.735840 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bev4 id: 1bev4 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bev4/nostruct-align/1bev4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bev4/nostruct-align/1bev4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bev4/nostruct-align/1bev4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13775/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.250854 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bf2 id: 1bf2 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bf2/nostruct-align/1bf2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bf2/nostruct-align/1bf2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bf2/nostruct-align/1bf2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12662/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -20.508911 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bf8 id: 1bf8 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bf8/nostruct-align/1bf8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bf8/nostruct-align/1bf8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bf8/nostruct-align/1bf8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16226/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.503906 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bfd id: 1bfd alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bfd/nostruct-align/1bfd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bfd/nostruct-align/1bfd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bfd/nostruct-align/1bfd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5643/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.473877 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bfeA id: 1bfeA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bfeA/nostruct-align/1bfeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bfeA/nostruct-align/1bfeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bfeA/nostruct-align/1bfeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27926/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.332886 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bfg id: 1bfg alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bfg/nostruct-align/1bfg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bfg/nostruct-align/1bfg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bfg/nostruct-align/1bfg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19568/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.501953 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bfmA id: 1bfmA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bfmA/nostruct-align/1bfmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bfmA/nostruct-align/1bfmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bfmA/nostruct-align/1bfmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20922/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.814941 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bg0 id: 1bg0 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bg0/nostruct-align/1bg0.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bg0/nostruct-align/1bg0.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bg0/nostruct-align/1bg0.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28635/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.559937 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bg1A id: 1bg1A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bg1A/nostruct-align/1bg1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bg1A/nostruct-align/1bg1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bg1A/nostruct-align/1bg1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23355/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.539917 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bg2 id: 1bg2 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bg2/nostruct-align/1bg2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bg2/nostruct-align/1bg2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bg2/nostruct-align/1bg2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30827/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.410889 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bg6 id: 1bg6 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bg6/nostruct-align/1bg6.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bg6/nostruct-align/1bg6.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bg6/nostruct-align/1bg6.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17607/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.180908 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bg7 id: 1bg7 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bg7/nostruct-align/1bg7.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bg7/nostruct-align/1bg7.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bg7/nostruct-align/1bg7.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16054/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.942871 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bg8A id: 1bg8A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bg8A/nostruct-align/1bg8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bg8A/nostruct-align/1bg8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bg8A/nostruct-align/1bg8A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11109/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.140991 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bgc id: 1bgc alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bgc/nostruct-align/1bgc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bgc/nostruct-align/1bgc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bgc/nostruct-align/1bgc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26182/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.021973 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bgeB id: 1bgeB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bgeB/nostruct-align/1bgeB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bgeB/nostruct-align/1bgeB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bgeB/nostruct-align/1bgeB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-26492/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.260986 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bgf id: 1bgf alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bgf/nostruct-align/1bgf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bgf/nostruct-align/1bgf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bgf/nostruct-align/1bgf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15038/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.528931 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bgj id: 1bgj alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bgj/nostruct-align/1bgj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bgj/nostruct-align/1bgj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bgj/nostruct-align/1bgj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8630/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.415894 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bgk id: 1bgk alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bgk/nostruct-align/1bgk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bgk/nostruct-align/1bgk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bgk/nostruct-align/1bgk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10576/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.229858 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bglA id: 1bglA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bglA/nostruct-align/1bglA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bglA/nostruct-align/1bglA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bglA/nostruct-align/1bglA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25259/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.042847 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bglA_1 id: 1bglA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bglA_1/nostruct-align/1bglA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bglA_1/nostruct-align/1bglA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bglA_1/nostruct-align/1bglA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26958/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.992920 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bglA_2 id: 1bglA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bglA_2/nostruct-align/1bglA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bglA_2/nostruct-align/1bglA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bglA_2/nostruct-align/1bglA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15593/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.387939 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bglA_3 id: 1bglA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bglA_3/nostruct-align/1bglA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bglA_3/nostruct-align/1bglA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bglA_3/nostruct-align/1bglA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27271/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.681885 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bglA_4 id: 1bglA_4 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bglA_4/nostruct-align/1bglA_4.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bglA_4/nostruct-align/1bglA_4.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bglA_4/nostruct-align/1bglA_4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24862/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.222900 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bglA_5 id: 1bglA_5 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bglA_5/nostruct-align/1bglA_5.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bglA_5/nostruct-align/1bglA_5.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bglA_5/nostruct-align/1bglA_5.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5868/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.736938 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bgp id: 1bgp alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bgp/nostruct-align/1bgp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bgp/nostruct-align/1bgp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bgp/nostruct-align/1bgp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23142/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.781860 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bgvA id: 1bgvA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bgvA/nostruct-align/1bgvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bgvA/nostruct-align/1bgvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bgvA/nostruct-align/1bgvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10443/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.626831 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bgyE id: 1bgyE alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bgyE/nostruct-align/1bgyE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bgyE/nostruct-align/1bgyE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bgyE/nostruct-align/1bgyE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15673/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.359863 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bh5A id: 1bh5A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bh5A/nostruct-align/1bh5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bh5A/nostruct-align/1bh5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bh5A/nostruct-align/1bh5A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-20593/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.412964 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bh7 id: 1bh7 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bh7/nostruct-align/1bh7.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bh7/nostruct-align/1bh7.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bh7/nostruct-align/1bh7.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16932/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.232910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bh9A id: 1bh9A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bh9A/nostruct-align/1bh9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bh9A/nostruct-align/1bh9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bh9A/nostruct-align/1bh9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13567/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.163818 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bh9B id: 1bh9B alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bh9B/nostruct-align/1bh9B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bh9B/nostruct-align/1bh9B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bh9B/nostruct-align/1bh9B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27025/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.208984 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bhb id: 1bhb alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhb/nostruct-align/1bhb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhb/nostruct-align/1bhb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bhb/nostruct-align/1bhb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9805/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.969971 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bhdA id: 1bhdA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhdA/nostruct-align/1bhdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhdA/nostruct-align/1bhdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bhdA/nostruct-align/1bhdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32527/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.436890 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bhe id: 1bhe alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhe/nostruct-align/1bhe.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhe/nostruct-align/1bhe.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bhe/nostruct-align/1bhe.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4921/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.774780 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bhgA id: 1bhgA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhgA/nostruct-align/1bhgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhgA/nostruct-align/1bhgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bhgA/nostruct-align/1bhgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12164/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.551880 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bhi id: 1bhi alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhi/nostruct-align/1bhi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhi/nostruct-align/1bhi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bhi/nostruct-align/1bhi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7793/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.637817 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bhjA id: 1bhjA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhjA/nostruct-align/1bhjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhjA/nostruct-align/1bhjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bhjA/nostruct-align/1bhjA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6314/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.915894 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bhp id: 1bhp alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhp/nostruct-align/1bhp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhp/nostruct-align/1bhp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bhp/nostruct-align/1bhp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4771/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.114868 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bhtA id: 1bhtA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhtA/nostruct-align/1bhtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhtA/nostruct-align/1bhtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bhtA/nostruct-align/1bhtA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13922/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.373901 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bhu id: 1bhu alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhu/nostruct-align/1bhu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhu/nostruct-align/1bhu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bhu/nostruct-align/1bhu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31976/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.189941 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bi0 id: 1bi0 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bi0/nostruct-align/1bi0.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bi0/nostruct-align/1bi0.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bi0/nostruct-align/1bi0.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31958/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.140869 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bi5A id: 1bi5A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bi5A/nostruct-align/1bi5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bi5A/nostruct-align/1bi5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bi5A/nostruct-align/1bi5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27182/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.805908 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bi6H id: 1bi6H alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bi6H/nostruct-align/1bi6H.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bi6H/nostruct-align/1bi6H.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bi6H/nostruct-align/1bi6H.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20135/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.607910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bi6H_1 id: 1bi6H_1 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bi6H_1/nostruct-align/1bi6H_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bi6H_1/nostruct-align/1bi6H_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bi6H_1/nostruct-align/1bi6H_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22039/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.903931 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bia id: 1bia alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bia/nostruct-align/1bia.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bia/nostruct-align/1bia.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bia/nostruct-align/1bia.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25873/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.046875 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bia_1 id: 1bia_1 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bia_1/nostruct-align/1bia_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bia_1/nostruct-align/1bia_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bia_1/nostruct-align/1bia_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1148/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.052856 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bia_2 id: 1bia_2 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bia_2/nostruct-align/1bia_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bia_2/nostruct-align/1bia_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bia_2/nostruct-align/1bia_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2863/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.346802 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bia_3 id: 1bia_3 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bia_3/nostruct-align/1bia_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bia_3/nostruct-align/1bia_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bia_3/nostruct-align/1bia_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19958/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.406860 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bib id: 1bib alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bib/nostruct-align/1bib.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bib/nostruct-align/1bib.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bib/nostruct-align/1bib.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24449/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.638794 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bif id: 1bif alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bif/nostruct-align/1bif.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bif/nostruct-align/1bif.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bif/nostruct-align/1bif.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1103/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.890869 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bihA id: 1bihA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bihA/nostruct-align/1bihA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bihA/nostruct-align/1bihA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bihA/nostruct-align/1bihA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6927/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -20.099976 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bio id: 1bio alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bio/nostruct-align/1bio.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bio/nostruct-align/1bio.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bio/nostruct-align/1bio.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16149/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.607910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bip id: 1bip alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bip/nostruct-align/1bip.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bip/nostruct-align/1bip.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bip/nostruct-align/1bip.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5326/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.816895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bix id: 1bix alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bix/nostruct-align/1bix.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bix/nostruct-align/1bix.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bix/nostruct-align/1bix.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28863/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.589844 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bj4A id: 1bj4A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bj4A/nostruct-align/1bj4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bj4A/nostruct-align/1bj4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bj4A/nostruct-align/1bj4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8047/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.624878 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bj5 id: 1bj5 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bj5/nostruct-align/1bj5.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bj5/nostruct-align/1bj5.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bj5/nostruct-align/1bj5.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25672/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.158813 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bj7 id: 1bj7 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bj7/nostruct-align/1bj7.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bj7/nostruct-align/1bj7.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bj7/nostruct-align/1bj7.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7328/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.937988 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bj8 id: 1bj8 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bj8/nostruct-align/1bj8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bj8/nostruct-align/1bj8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bj8/nostruct-align/1bj8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19409/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.244995 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bjaA id: 1bjaA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bjaA/nostruct-align/1bjaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bjaA/nostruct-align/1bjaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bjaA/nostruct-align/1bjaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11489/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.885864 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bjmA id: 1bjmA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bjmA/nostruct-align/1bjmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bjmA/nostruct-align/1bjmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bjmA/nostruct-align/1bjmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8694/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.551880 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bjnA id: 1bjnA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bjnA/nostruct-align/1bjnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bjnA/nostruct-align/1bjnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bjnA/nostruct-align/1bjnA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26422/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.202881 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bjoA id: 1bjoA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bjoA/nostruct-align/1bjoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bjoA/nostruct-align/1bjoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bjoA/nostruct-align/1bjoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1919/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.909912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bjt id: 1bjt alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bjt/nostruct-align/1bjt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bjt/nostruct-align/1bjt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bjt/nostruct-align/1bjt.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9438/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.705811 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bjwA id: 1bjwA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bjwA/nostruct-align/1bjwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bjwA/nostruct-align/1bjwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bjwA/nostruct-align/1bjwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18839/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.611938 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bjx id: 1bjx alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bjx/nostruct-align/1bjx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bjx/nostruct-align/1bjx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bjx/nostruct-align/1bjx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5705/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.642822 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bk0 id: 1bk0 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bk0/nostruct-align/1bk0.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bk0/nostruct-align/1bk0.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bk0/nostruct-align/1bk0.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18847/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.922852 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bk5A id: 1bk5A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bk5A/nostruct-align/1bk5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bk5A/nostruct-align/1bk5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bk5A/nostruct-align/1bk5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9892/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.405884 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bk6A id: 1bk6A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bk6A/nostruct-align/1bk6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bk6A/nostruct-align/1bk6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bk6A/nostruct-align/1bk6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9504/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.391846 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bk7A id: 1bk7A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bk7A/nostruct-align/1bk7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bk7A/nostruct-align/1bk7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bk7A/nostruct-align/1bk7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20149/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.328003 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bkb id: 1bkb alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkb/nostruct-align/1bkb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkb/nostruct-align/1bkb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bkb/nostruct-align/1bkb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20659/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.525879 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bkcA id: 1bkcA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkcA/nostruct-align/1bkcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkcA/nostruct-align/1bkcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bkcA/nostruct-align/1bkcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23042/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.607910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bkcE id: 1bkcE alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkcE/nostruct-align/1bkcE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkcE/nostruct-align/1bkcE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bkcE/nostruct-align/1bkcE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10835/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.023926 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bkdS id: 1bkdS alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkdS/nostruct-align/1bkdS.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkdS/nostruct-align/1bkdS.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bkdS/nostruct-align/1bkdS.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4151/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.014893 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bkf id: 1bkf alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkf/nostruct-align/1bkf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkf/nostruct-align/1bkf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bkf/nostruct-align/1bkf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19005/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.521973 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bkjA id: 1bkjA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkjA/nostruct-align/1bkjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkjA/nostruct-align/1bkjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bkjA/nostruct-align/1bkjA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12066/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.932861 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bkpA id: 1bkpA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkpA/nostruct-align/1bkpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkpA/nostruct-align/1bkpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bkpA/nostruct-align/1bkpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9492/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.247925 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bkq id: 1bkq alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkq/nostruct-align/1bkq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkq/nostruct-align/1bkq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bkq/nostruct-align/1bkq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3251/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.542847 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bkrA id: 1bkrA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkrA/nostruct-align/1bkrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkrA/nostruct-align/1bkrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bkrA/nostruct-align/1bkrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21792/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.715820 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bksA id: 1bksA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bksA/nostruct-align/1bksA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bksA/nostruct-align/1bksA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bksA/nostruct-align/1bksA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4060/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.000977 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bksB id: 1bksB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bksB/nostruct-align/1bksB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bksB/nostruct-align/1bksB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bksB/nostruct-align/1bksB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16641/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.113892 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bku id: 1bku alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bku/nostruct-align/1bku.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bku/nostruct-align/1bku.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bku/nostruct-align/1bku.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9085/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.462891 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bkzA id: 1bkzA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkzA/nostruct-align/1bkzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkzA/nostruct-align/1bkzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bkzA/nostruct-align/1bkzA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16707/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.848877 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bl0A id: 1bl0A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bl0A/nostruct-align/1bl0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bl0A/nostruct-align/1bl0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bl0A/nostruct-align/1bl0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16197/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.572876 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bl1 id: 1bl1 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bl1/nostruct-align/1bl1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bl1/nostruct-align/1bl1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bl1/nostruct-align/1bl1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20985/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.516846 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bl8A id: 1bl8A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bl8A/nostruct-align/1bl8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bl8A/nostruct-align/1bl8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bl8A/nostruct-align/1bl8A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26652/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -23.072876 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ble id: 1ble alignment found: /projects/compbio/experiments/models.97/pdb/1b/1ble/nostruct-align/1ble.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1ble/nostruct-align/1ble.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1ble/nostruct-align/1ble.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15520/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.563843 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bli id: 1bli alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bli/nostruct-align/1bli.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bli/nostruct-align/1bli.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bli/nostruct-align/1bli.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29073/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.970825 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1blxA id: 1blxA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1blxA/nostruct-align/1blxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1blxA/nostruct-align/1blxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1blxA/nostruct-align/1blxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6156/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.917847 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bm4 id: 1bm4 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bm4/nostruct-align/1bm4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bm4/nostruct-align/1bm4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bm4/nostruct-align/1bm4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9780/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.624878 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bm4A id: 1bm4A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bm4A/nostruct-align/1bm4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bm4A/nostruct-align/1bm4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bm4A/nostruct-align/1bm4A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3083/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.021973 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bm8 id: 1bm8 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bm8/nostruct-align/1bm8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bm8/nostruct-align/1bm8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bm8/nostruct-align/1bm8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23756/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.345825 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bm9A id: 1bm9A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bm9A/nostruct-align/1bm9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bm9A/nostruct-align/1bm9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bm9A/nostruct-align/1bm9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10622/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.944946 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bmdA id: 1bmdA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bmdA/nostruct-align/1bmdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bmdA/nostruct-align/1bmdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bmdA/nostruct-align/1bmdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32087/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.212891 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bmfG id: 1bmfG alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bmfG/nostruct-align/1bmfG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bmfG/nostruct-align/1bmfG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bmfG/nostruct-align/1bmfG.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10640/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.135864 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bmlC id: 1bmlC alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bmlC/nostruct-align/1bmlC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bmlC/nostruct-align/1bmlC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bmlC/nostruct-align/1bmlC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8469/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.401855 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bmtA id: 1bmtA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bmtA/nostruct-align/1bmtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bmtA/nostruct-align/1bmtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bmtA/nostruct-align/1bmtA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12434/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.602905 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bmtA_1 id: 1bmtA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bmtA_1/nostruct-align/1bmtA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bmtA_1/nostruct-align/1bmtA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bmtA_1/nostruct-align/1bmtA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18879/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.557983 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bmtA_2 id: 1bmtA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bmtA_2/nostruct-align/1bmtA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bmtA_2/nostruct-align/1bmtA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bmtA_2/nostruct-align/1bmtA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19545/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.121826 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bmv1 id: 1bmv1 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bmv1/nostruct-align/1bmv1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bmv1/nostruct-align/1bmv1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bmv1/nostruct-align/1bmv1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23883/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.103882 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bmv2 id: 1bmv2 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bmv2/nostruct-align/1bmv2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bmv2/nostruct-align/1bmv2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bmv2/nostruct-align/1bmv2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29332/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.927979 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bmx id: 1bmx alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bmx/nostruct-align/1bmx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bmx/nostruct-align/1bmx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bmx/nostruct-align/1bmx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20477/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.678833 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bmy id: 1bmy alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bmy/nostruct-align/1bmy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bmy/nostruct-align/1bmy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bmy/nostruct-align/1bmy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11254/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.567871 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bn5 id: 1bn5 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bn5/nostruct-align/1bn5.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bn5/nostruct-align/1bn5.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bn5/nostruct-align/1bn5.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7018/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.302856 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bn6A id: 1bn6A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bn6A/nostruct-align/1bn6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bn6A/nostruct-align/1bn6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bn6A/nostruct-align/1bn6A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29416/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.134888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bn7A id: 1bn7A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bn7A/nostruct-align/1bn7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bn7A/nostruct-align/1bn7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bn7A/nostruct-align/1bn7A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20819/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.188965 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bn8A id: 1bn8A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bn8A/nostruct-align/1bn8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bn8A/nostruct-align/1bn8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bn8A/nostruct-align/1bn8A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6765/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.267822 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bnb id: 1bnb alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bnb/nostruct-align/1bnb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bnb/nostruct-align/1bnb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bnb/nostruct-align/1bnb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2485/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.894897 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bncA id: 1bncA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bncA/nostruct-align/1bncA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bncA/nostruct-align/1bncA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bncA/nostruct-align/1bncA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19118/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.606934 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bncA_1 id: 1bncA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bncA_1/nostruct-align/1bncA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bncA_1/nostruct-align/1bncA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bncA_1/nostruct-align/1bncA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29553/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.260864 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bncA_2 id: 1bncA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bncA_2/nostruct-align/1bncA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bncA_2/nostruct-align/1bncA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bncA_2/nostruct-align/1bncA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27483/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.781860 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bncA_3 id: 1bncA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bncA_3/nostruct-align/1bncA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bncA_3/nostruct-align/1bncA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bncA_3/nostruct-align/1bncA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9898/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.623901 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bncB id: 1bncB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bncB/nostruct-align/1bncB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bncB/nostruct-align/1bncB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bncB/nostruct-align/1bncB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10059/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.796875 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bndA id: 1bndA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bndA/nostruct-align/1bndA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bndA/nostruct-align/1bndA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bndA/nostruct-align/1bndA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1639/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.179932 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bnkA id: 1bnkA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bnkA/nostruct-align/1bnkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bnkA/nostruct-align/1bnkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bnkA/nostruct-align/1bnkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30853/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.789917 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bnx id: 1bnx alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bnx/nostruct-align/1bnx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bnx/nostruct-align/1bnx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bnx/nostruct-align/1bnx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9573/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.234863 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bnxA id: 1bnxA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bnxA/nostruct-align/1bnxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bnxA/nostruct-align/1bnxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bnxA/nostruct-align/1bnxA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5183/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.504883 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bo1A id: 1bo1A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bo1A/nostruct-align/1bo1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bo1A/nostruct-align/1bo1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bo1A/nostruct-align/1bo1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26464/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.955933 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bo4A id: 1bo4A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bo4A/nostruct-align/1bo4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bo4A/nostruct-align/1bo4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bo4A/nostruct-align/1bo4A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21078/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.023804 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bo4B id: 1bo4B alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bo4B/nostruct-align/1bo4B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bo4B/nostruct-align/1bo4B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bo4B/nostruct-align/1bo4B.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-16270/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.159912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bo9 id: 1bo9 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bo9/nostruct-align/1bo9.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bo9/nostruct-align/1bo9.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bo9/nostruct-align/1bo9.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3307/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.450806 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bo9A id: 1bo9A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bo9A/nostruct-align/1bo9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bo9A/nostruct-align/1bo9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bo9A/nostruct-align/1bo9A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6275/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.194946 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bob id: 1bob alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bob/nostruct-align/1bob.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bob/nostruct-align/1bob.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bob/nostruct-align/1bob.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14513/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.373901 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1boe id: 1boe alignment found: /projects/compbio/experiments/models.97/pdb/1b/1boe/nostruct-align/1boe.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1boe/nostruct-align/1boe.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1boe/nostruct-align/1boe.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17403/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.450928 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1boeA id: 1boeA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1boeA/nostruct-align/1boeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1boeA/nostruct-align/1boeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1boeA/nostruct-align/1boeA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7799/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.563843 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bolA id: 1bolA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bolA/nostruct-align/1bolA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bolA/nostruct-align/1bolA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bolA/nostruct-align/1bolA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20927/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.362915 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bom_1a1 id: 1bom_1a1 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bom_1a1/nostruct-align/1bom_1a1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bom_1a1/nostruct-align/1bom_1a1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bom_1a1/nostruct-align/1bom_1a1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25203/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.352905 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1booA id: 1booA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1booA/nostruct-align/1booA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1booA/nostruct-align/1booA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1booA/nostruct-align/1booA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5750/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.698853 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bor id: 1bor alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bor/nostruct-align/1bor.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bor/nostruct-align/1bor.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bor/nostruct-align/1bor.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5149/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.968872 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bouA id: 1bouA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bouA/nostruct-align/1bouA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bouA/nostruct-align/1bouA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bouA/nostruct-align/1bouA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27542/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.450928 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bouB id: 1bouB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bouB/nostruct-align/1bouB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bouB/nostruct-align/1bouB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bouB/nostruct-align/1bouB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13789/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.710938 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bovA id: 1bovA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bovA/nostruct-align/1bovA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bovA/nostruct-align/1bovA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bovA/nostruct-align/1bovA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1391/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.998901 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bowA id: 1bowA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bowA/nostruct-align/1bowA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bowA/nostruct-align/1bowA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bowA/nostruct-align/1bowA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19584/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.853882 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1boy id: 1boy alignment found: /projects/compbio/experiments/models.97/pdb/1b/1boy/nostruct-align/1boy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1boy/nostruct-align/1boy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1boy/nostruct-align/1boy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32434/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.726929 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bp1 id: 1bp1 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bp1/nostruct-align/1bp1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bp1/nostruct-align/1bp1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bp1/nostruct-align/1bp1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21216/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.313965 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bp3A id: 1bp3A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bp3A/nostruct-align/1bp3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bp3A/nostruct-align/1bp3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bp3A/nostruct-align/1bp3A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-29927/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.011841 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bp7A id: 1bp7A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bp7A/nostruct-align/1bp7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bp7A/nostruct-align/1bp7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bp7A/nostruct-align/1bp7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30375/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.416870 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bpi id: 1bpi alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bpi/nostruct-align/1bpi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bpi/nostruct-align/1bpi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bpi/nostruct-align/1bpi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10080/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.811890 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bpoA id: 1bpoA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bpoA/nostruct-align/1bpoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bpoA/nostruct-align/1bpoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bpoA/nostruct-align/1bpoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22669/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.386963 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bpv id: 1bpv alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bpv/nostruct-align/1bpv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bpv/nostruct-align/1bpv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bpv/nostruct-align/1bpv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32335/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.947876 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bpwA id: 1bpwA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bpwA/nostruct-align/1bpwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bpwA/nostruct-align/1bpwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bpwA/nostruct-align/1bpwA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13119/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.929932 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bpyA id: 1bpyA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bpyA/nostruct-align/1bpyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bpyA/nostruct-align/1bpyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bpyA/nostruct-align/1bpyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12898/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.638794 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bq3B id: 1bq3B alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bq3B/nostruct-align/1bq3B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bq3B/nostruct-align/1bq3B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bq3B/nostruct-align/1bq3B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8636/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.743896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bqbA id: 1bqbA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqbA/nostruct-align/1bqbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqbA/nostruct-align/1bqbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bqbA/nostruct-align/1bqbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24020/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.246948 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bqcA id: 1bqcA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqcA/nostruct-align/1bqcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqcA/nostruct-align/1bqcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bqcA/nostruct-align/1bqcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14721/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.455811 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bqg id: 1bqg alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqg/nostruct-align/1bqg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqg/nostruct-align/1bqg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bqg/nostruct-align/1bqg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19450/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -52.302856 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bqhG id: 1bqhG alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqhG/nostruct-align/1bqhG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqhG/nostruct-align/1bqhG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bqhG/nostruct-align/1bqhG.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-28642/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.347900 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bqk id: 1bqk alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqk/nostruct-align/1bqk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqk/nostruct-align/1bqk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bqk/nostruct-align/1bqk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24395/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.791870 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bqsA id: 1bqsA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqsA/nostruct-align/1bqsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqsA/nostruct-align/1bqsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bqsA/nostruct-align/1bqsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31527/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.414917 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bqt id: 1bqt alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqt/nostruct-align/1bqt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqt/nostruct-align/1bqt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bqt/nostruct-align/1bqt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26192/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.438843 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bquA id: 1bquA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bquA/nostruct-align/1bquA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bquA/nostruct-align/1bquA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bquA/nostruct-align/1bquA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10450/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.225952 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bqv id: 1bqv alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqv/nostruct-align/1bqv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqv/nostruct-align/1bqv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bqv/nostruct-align/1bqv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9033/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.008911 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bqz id: 1bqz alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqz/nostruct-align/1bqz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqz/nostruct-align/1bqz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bqz/nostruct-align/1bqz.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1902/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.774902 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1br0A id: 1br0A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1br0A/nostruct-align/1br0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1br0A/nostruct-align/1br0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1br0A/nostruct-align/1br0A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1417/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.339844 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1br9 id: 1br9 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1br9/nostruct-align/1br9.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1br9/nostruct-align/1br9.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1br9/nostruct-align/1br9.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.344849 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1brd id: 1brd alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brd/nostruct-align/1brd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brd/nostruct-align/1brd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1brd/nostruct-align/1brd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16005/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.188965 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1brfA id: 1brfA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brfA/nostruct-align/1brfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brfA/nostruct-align/1brfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1brfA/nostruct-align/1brfA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20268/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.569946 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1brlA id: 1brlA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brlA/nostruct-align/1brlA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brlA/nostruct-align/1brlA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1brlA/nostruct-align/1brlA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27872/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.473877 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1brlB id: 1brlB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brlB/nostruct-align/1brlB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brlB/nostruct-align/1brlB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1brlB/nostruct-align/1brlB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4215/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.959961 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1brmA id: 1brmA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brmA/nostruct-align/1brmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brmA/nostruct-align/1brmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1brmA/nostruct-align/1brmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17158/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.556885 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1brnL id: 1brnL alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brnL/nostruct-align/1brnL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brnL/nostruct-align/1brnL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1brnL/nostruct-align/1brnL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-487/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.316895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1broA id: 1broA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1broA/nostruct-align/1broA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1broA/nostruct-align/1broA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1broA/nostruct-align/1broA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5845/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.499878 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1brsD id: 1brsD alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brsD/nostruct-align/1brsD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brsD/nostruct-align/1brsD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1brsD/nostruct-align/1brsD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16147/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.227905 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1brt id: 1brt alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brt/nostruct-align/1brt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brt/nostruct-align/1brt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1brt/nostruct-align/1brt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16512/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.061890 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1brwA id: 1brwA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brwA/nostruct-align/1brwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brwA/nostruct-align/1brwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1brwA/nostruct-align/1brwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-462/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.060913 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1brz id: 1brz alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brz/nostruct-align/1brz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brz/nostruct-align/1brz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1brz/nostruct-align/1brz.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11504/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.739868 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bs0A id: 1bs0A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bs0A/nostruct-align/1bs0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bs0A/nostruct-align/1bs0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bs0A/nostruct-align/1bs0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22348/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.336914 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bs2A id: 1bs2A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bs2A/nostruct-align/1bs2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bs2A/nostruct-align/1bs2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bs2A/nostruct-align/1bs2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8598/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.895874 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bs4A id: 1bs4A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bs4A/nostruct-align/1bs4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bs4A/nostruct-align/1bs4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bs4A/nostruct-align/1bs4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1581/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.765869 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bs9 id: 1bs9 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bs9/nostruct-align/1bs9.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bs9/nostruct-align/1bs9.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bs9/nostruct-align/1bs9.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17640/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.831909 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bsg id: 1bsg alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bsg/nostruct-align/1bsg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bsg/nostruct-align/1bsg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bsg/nostruct-align/1bsg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6292/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.678833 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bsjA id: 1bsjA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bsjA/nostruct-align/1bsjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bsjA/nostruct-align/1bsjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bsjA/nostruct-align/1bsjA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4511/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.575806 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bsvA id: 1bsvA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bsvA/nostruct-align/1bsvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bsvA/nostruct-align/1bsvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bsvA/nostruct-align/1bsvA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27246/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.123901 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bt0A id: 1bt0A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bt0A/nostruct-align/1bt0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bt0A/nostruct-align/1bt0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bt0A/nostruct-align/1bt0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5132/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.204956 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bt3A id: 1bt3A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bt3A/nostruct-align/1bt3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bt3A/nostruct-align/1bt3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bt3A/nostruct-align/1bt3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15338/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.645874 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bt4 id: 1bt4 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bt4/nostruct-align/1bt4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bt4/nostruct-align/1bt4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bt4/nostruct-align/1bt4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4952/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.071899 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bteA id: 1bteA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bteA/nostruct-align/1bteA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bteA/nostruct-align/1bteA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bteA/nostruct-align/1bteA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3219/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.235840 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1btkA id: 1btkA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1btkA/nostruct-align/1btkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1btkA/nostruct-align/1btkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1btkA/nostruct-align/1btkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25630/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.980835 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1btkB id: 1btkB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1btkB/nostruct-align/1btkB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1btkB/nostruct-align/1btkB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1btkB/nostruct-align/1btkB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17925/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.725830 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1btl id: 1btl alignment found: /projects/compbio/experiments/models.97/pdb/1b/1btl/nostruct-align/1btl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1btl/nostruct-align/1btl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1btl/nostruct-align/1btl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12816/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.194824 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1btmA id: 1btmA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1btmA/nostruct-align/1btmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1btmA/nostruct-align/1btmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1btmA/nostruct-align/1btmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11806/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.699829 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1btn id: 1btn alignment found: /projects/compbio/experiments/models.97/pdb/1b/1btn/nostruct-align/1btn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1btn/nostruct-align/1btn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1btn/nostruct-align/1btn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7971/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.704956 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1btu id: 1btu alignment found: /projects/compbio/experiments/models.97/pdb/1b/1btu/nostruct-align/1btu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1btu/nostruct-align/1btu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1btu/nostruct-align/1btu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8104/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.243896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bu2A id: 1bu2A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bu2A/nostruct-align/1bu2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bu2A/nostruct-align/1bu2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bu2A/nostruct-align/1bu2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9841/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.360840 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bu5A id: 1bu5A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bu5A/nostruct-align/1bu5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bu5A/nostruct-align/1bu5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bu5A/nostruct-align/1bu5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28389/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.941895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bu7A id: 1bu7A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bu7A/nostruct-align/1bu7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bu7A/nostruct-align/1bu7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bu7A/nostruct-align/1bu7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25461/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.057983 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bucA_1 id: 1bucA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bucA_1/nostruct-align/1bucA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bucA_1/nostruct-align/1bucA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bucA_1/nostruct-align/1bucA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6997/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.377808 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bucA_2 id: 1bucA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bucA_2/nostruct-align/1bucA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bucA_2/nostruct-align/1bucA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bucA_2/nostruct-align/1bucA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3266/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.524902 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1budA id: 1budA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1budA/nostruct-align/1budA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1budA/nostruct-align/1budA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1budA/nostruct-align/1budA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8180/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.304932 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bueA id: 1bueA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bueA/nostruct-align/1bueA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bueA/nostruct-align/1bueA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bueA/nostruct-align/1bueA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20962/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.006958 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1buhB id: 1buhB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1buhB/nostruct-align/1buhB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1buhB/nostruct-align/1buhB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1buhB/nostruct-align/1buhB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-30219/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.280884 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bunB id: 1bunB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bunB/nostruct-align/1bunB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bunB/nostruct-align/1bunB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bunB/nostruct-align/1bunB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9123/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.824829 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1buoA id: 1buoA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1buoA/nostruct-align/1buoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1buoA/nostruct-align/1buoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1buoA/nostruct-align/1buoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19655/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.945923 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bupA id: 1bupA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bupA/nostruct-align/1bupA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bupA/nostruct-align/1bupA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bupA/nostruct-align/1bupA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20569/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.194824 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1burA id: 1burA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1burA/nostruct-align/1burA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1burA/nostruct-align/1burA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1burA/nostruct-align/1burA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12463/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.563965 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1burS id: 1burS alignment found: /projects/compbio/experiments/models.97/pdb/1b/1burS/nostruct-align/1burS.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1burS/nostruct-align/1burS.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1burS/nostruct-align/1burS.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8745/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.246948 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bv1 id: 1bv1 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bv1/nostruct-align/1bv1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bv1/nostruct-align/1bv1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bv1/nostruct-align/1bv1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10465/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.454956 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bvb id: 1bvb alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bvb/nostruct-align/1bvb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvb/nostruct-align/1bvb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvb/nostruct-align/1bvb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29917/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.251953 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bvh id: 1bvh alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bvh/nostruct-align/1bvh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvh/nostruct-align/1bvh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvh/nostruct-align/1bvh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31528/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.699951 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bvp1 id: 1bvp1 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bvp1/nostruct-align/1bvp1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvp1/nostruct-align/1bvp1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvp1/nostruct-align/1bvp1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-566/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.605957 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bvp1_1 id: 1bvp1_1 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bvp1_1/nostruct-align/1bvp1_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bvp1_1/nostruct-align/1bvp1_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bvp1_1/nostruct-align/1bvp1_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2783/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.151855 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bvp1_2 id: 1bvp1_2 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bvp1_2/nostruct-align/1bvp1_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bvp1_2/nostruct-align/1bvp1_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bvp1_2/nostruct-align/1bvp1_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5775/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.013794 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bvqA id: 1bvqA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-purr-12425/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.091919 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bvsB id: 1bvsB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bvsB/nostruct-align/1bvsB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvsB/nostruct-align/1bvsB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvsB/nostruct-align/1bvsB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-28136/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.854980 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bvwA id: 1bvwA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bvwA/nostruct-align/1bvwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvwA/nostruct-align/1bvwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvwA/nostruct-align/1bvwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17721/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.503906 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bvyF id: 1bvyF alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bvyF/nostruct-align/1bvyF.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvyF/nostruct-align/1bvyF.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvyF/nostruct-align/1bvyF.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5995/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.841919 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bvzA id: 1bvzA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bvzA/nostruct-align/1bvzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvzA/nostruct-align/1bvzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvzA/nostruct-align/1bvzA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13879/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.329834 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bw0A id: 1bw0A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bw0A/nostruct-align/1bw0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bw0A/nostruct-align/1bw0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bw0A/nostruct-align/1bw0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17264/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.757813 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bw3 id: 1bw3 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bw3/nostruct-align/1bw3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bw3/nostruct-align/1bw3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bw3/nostruct-align/1bw3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10313/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.621948 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bw4 id: 1bw4 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bw4/nostruct-align/1bw4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bw4/nostruct-align/1bw4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bw4/nostruct-align/1bw4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15615/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.621948 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bw6 id: 1bw6 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bw6/nostruct-align/1bw6.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bw6/nostruct-align/1bw6.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bw6/nostruct-align/1bw6.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22183/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.326782 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bw6A id: 1bw6A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bw6A/nostruct-align/1bw6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bw6A/nostruct-align/1bw6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bw6A/nostruct-align/1bw6A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32560/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.326782 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bw8 id: 1bw8 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bw8/nostruct-align/1bw8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bw8/nostruct-align/1bw8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bw8/nostruct-align/1bw8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9134/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.206909 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bw8A id: 1bw8A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bw8A/nostruct-align/1bw8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bw8A/nostruct-align/1bw8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bw8A/nostruct-align/1bw8A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10963/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.865845 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bw9A id: 1bw9A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bw9A/nostruct-align/1bw9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bw9A/nostruct-align/1bw9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bw9A/nostruct-align/1bw9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24875/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.935791 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bwx id: 1bwx alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bwx/nostruct-align/1bwx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bwx/nostruct-align/1bwx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bwx/nostruct-align/1bwx.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25889/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.625977 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bwzA id: 1bwzA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bwzA/nostruct-align/1bwzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bwzA/nostruct-align/1bwzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bwzA/nostruct-align/1bwzA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14982/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.504883 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bx4A id: 1bx4A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bx4A/nostruct-align/1bx4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bx4A/nostruct-align/1bx4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bx4A/nostruct-align/1bx4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14484/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.376831 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bx7 id: 1bx7 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bx7/nostruct-align/1bx7.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bx7/nostruct-align/1bx7.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bx7/nostruct-align/1bx7.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20301/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.328857 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bxaA id: 1bxaA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxaA/nostruct-align/1bxaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxaA/nostruct-align/1bxaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxaA/nostruct-align/1bxaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10438/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.230957 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bxdA id: 1bxdA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxdA/nostruct-align/1bxdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxdA/nostruct-align/1bxdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxdA/nostruct-align/1bxdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12889/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.700806 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bxeA id: 1bxeA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxeA/nostruct-align/1bxeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxeA/nostruct-align/1bxeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxeA/nostruct-align/1bxeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10932/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.374878 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bxiB id: 1bxiB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxiB/nostruct-align/1bxiB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxiB/nostruct-align/1bxiB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxiB/nostruct-align/1bxiB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13537/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.800903 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bxkA id: 1bxkA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxkA/nostruct-align/1bxkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxkA/nostruct-align/1bxkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxkA/nostruct-align/1bxkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15762/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.478882 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bxm id: 1bxm alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxm/nostruct-align/1bxm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxm/nostruct-align/1bxm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxm/nostruct-align/1bxm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22237/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.820923 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bxoA id: 1bxoA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxoA/nostruct-align/1bxoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxoA/nostruct-align/1bxoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxoA/nostruct-align/1bxoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24734/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.858887 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bxrA id: 1bxrA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxrA/nostruct-align/1bxrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxrA/nostruct-align/1bxrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxrA/nostruct-align/1bxrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10700/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.206909 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bxvA id: 1bxvA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxvA/nostruct-align/1bxvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxvA/nostruct-align/1bxvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxvA/nostruct-align/1bxvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12874/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.513916 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bxwA id: 1bxwA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxwA/nostruct-align/1bxwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxwA/nostruct-align/1bxwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxwA/nostruct-align/1bxwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24182/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.360962 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bxxA id: 1bxxA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxxA/nostruct-align/1bxxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxxA/nostruct-align/1bxxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxxA/nostruct-align/1bxxA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18767/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.865845 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bxyA id: 1bxyA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxyA/nostruct-align/1bxyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxyA/nostruct-align/1bxyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxyA/nostruct-align/1bxyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27921/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.275879 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1by1A id: 1by1A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1by1A/nostruct-align/1by1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1by1A/nostruct-align/1by1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1by1A/nostruct-align/1by1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7753/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.916870 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1by2 id: 1by2 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1by2/nostruct-align/1by2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1by2/nostruct-align/1by2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1by2/nostruct-align/1by2.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20476/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.751953 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1by3A id: 1by3A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1by3A/nostruct-align/1by3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1by3A/nostruct-align/1by3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1by3A/nostruct-align/1by3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7689/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.845947 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1by5A id: 1by5A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1by5A/nostruct-align/1by5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1by5A/nostruct-align/1by5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1by5A/nostruct-align/1by5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11828/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.136841 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1byb id: 1byb alignment found: /projects/compbio/experiments/models.97/pdb/1b/1byb/nostruct-align/1byb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1byb/nostruct-align/1byb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1byb/nostruct-align/1byb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22858/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.984863 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1byfA id: 1byfA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1byfA/nostruct-align/1byfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1byfA/nostruct-align/1byfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1byfA/nostruct-align/1byfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11133/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.810913 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1byi id: 1byi alignment found: /projects/compbio/experiments/models.97/pdb/1b/1byi/nostruct-align/1byi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1byi/nostruct-align/1byi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1byi/nostruct-align/1byi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17034/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.510986 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bykA id: 1bykA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bykA/nostruct-align/1bykA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bykA/nostruct-align/1bykA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bykA/nostruct-align/1bykA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14429/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.715942 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1byl id: 1byl alignment found: /projects/compbio/experiments/models.97/pdb/1b/1byl/nostruct-align/1byl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1byl/nostruct-align/1byl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1byl/nostruct-align/1byl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10095/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.621948 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bylA id: 1bylA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bylA/nostruct-align/1bylA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bylA/nostruct-align/1bylA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bylA/nostruct-align/1bylA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21834/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.689941 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1byqA id: 1byqA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1byqA/nostruct-align/1byqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1byqA/nostruct-align/1byqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1byqA/nostruct-align/1byqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31735/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.481812 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1byrA id: 1byrA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1byrA/nostruct-align/1byrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1byrA/nostruct-align/1byrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1byrA/nostruct-align/1byrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14212/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.090942 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1byuA id: 1byuA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1byuA/nostruct-align/1byuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1byuA/nostruct-align/1byuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1byuA/nostruct-align/1byuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16592/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.081909 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bywA id: 1bywA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bywA/nostruct-align/1bywA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bywA/nostruct-align/1bywA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bywA/nostruct-align/1bywA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9970/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.728882 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bza id: 1bza alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bza/nostruct-align/1bza.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bza/nostruct-align/1bza.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bza/nostruct-align/1bza.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17884/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.784912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bzb id: 1bzb alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bzb/nostruct-align/1bzb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bzb/nostruct-align/1bzb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bzb/nostruct-align/1bzb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23033/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.461914 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bzbA id: 1bzbA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bzbA/nostruct-align/1bzbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bzbA/nostruct-align/1bzbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bzbA/nostruct-align/1bzbA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8520/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.461914 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bzg id: 1bzg alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bzg/nostruct-align/1bzg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bzg/nostruct-align/1bzg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bzg/nostruct-align/1bzg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17568/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.441895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bzk id: 1bzk alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bzk/nostruct-align/1bzk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bzk/nostruct-align/1bzk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bzk/nostruct-align/1bzk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28700/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.720947 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bzkA id: 1bzkA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bzkA/nostruct-align/1bzkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bzkA/nostruct-align/1bzkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bzkA/nostruct-align/1bzkA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25522/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.754883 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bzpA id: 1bzpA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bzpA/nostruct-align/1bzpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bzpA/nostruct-align/1bzpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bzpA/nostruct-align/1bzpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-757/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.316895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1bzyA id: 1bzyA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bzyA/nostruct-align/1bzyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bzyA/nostruct-align/1bzyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bzyA/nostruct-align/1bzyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-361/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.569824 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c05A id: 1c05A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c05A/nostruct-align/1c05A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c05A/nostruct-align/1c05A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c05A/nostruct-align/1c05A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12670/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.369873 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c0aA id: 1c0aA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c0aA/nostruct-align/1c0aA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c0aA/nostruct-align/1c0aA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c0aA/nostruct-align/1c0aA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1110/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.896851 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c17M id: 1c17M alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c17M/nostruct-align/1c17M.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c17M/nostruct-align/1c17M.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c17M/nostruct-align/1c17M.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19730/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.664917 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c1gA id: 1c1gA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c1gA/nostruct-align/1c1gA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c1gA/nostruct-align/1c1gA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c1gA/nostruct-align/1c1gA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25137/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -22.582886 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c1gB id: 1c1gB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c1gB/nostruct-align/1c1gB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c1gB/nostruct-align/1c1gB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c1gB/nostruct-align/1c1gB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2366/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -22.582886 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c1gC id: 1c1gC alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c1gC/nostruct-align/1c1gC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c1gC/nostruct-align/1c1gC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c1gC/nostruct-align/1c1gC.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22600/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -22.355957 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c1gD id: 1c1gD alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c1gD/nostruct-align/1c1gD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c1gD/nostruct-align/1c1gD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c1gD/nostruct-align/1c1gD.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6484/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -22.355957 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c1kA id: 1c1kA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c1kA/nostruct-align/1c1kA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c1kA/nostruct-align/1c1kA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c1kA/nostruct-align/1c1kA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21328/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.945923 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c1lA id: 1c1lA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c1lA/nostruct-align/1c1lA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c1lA/nostruct-align/1c1lA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c1lA/nostruct-align/1c1lA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12688/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.562988 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c1yB id: 1c1yB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c1yB/nostruct-align/1c1yB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c1yB/nostruct-align/1c1yB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c1yB/nostruct-align/1c1yB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13302/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.118896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c20A id: 1c20A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c20A/nostruct-align/1c20A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c20A/nostruct-align/1c20A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c20A/nostruct-align/1c20A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20363/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.112915 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c24A id: 1c24A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c24A/nostruct-align/1c24A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c24A/nostruct-align/1c24A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c24A/nostruct-align/1c24A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17903/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.566895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c25 id: 1c25 alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c25/nostruct-align/1c25.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c25/nostruct-align/1c25.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c25/nostruct-align/1c25.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27876/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.981812 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c28A id: 1c28A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c28A/nostruct-align/1c28A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c28A/nostruct-align/1c28A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c28A/nostruct-align/1c28A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23878/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.153931 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c2aA id: 1c2aA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c2aA/nostruct-align/1c2aA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c2aA/nostruct-align/1c2aA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c2aA/nostruct-align/1c2aA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20035/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.671997 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c2rA id: 1c2rA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c2rA/nostruct-align/1c2rA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c2rA/nostruct-align/1c2rA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c2rA/nostruct-align/1c2rA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19741/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.387939 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c2uA id: 1c2uA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c2uA/nostruct-align/1c2uA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c2uA/nostruct-align/1c2uA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c2uA/nostruct-align/1c2uA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14482/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.108887 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c3cA id: 1c3cA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3cA/nostruct-align/1c3cA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3cA/nostruct-align/1c3cA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3cA/nostruct-align/1c3cA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25455/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.069824 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c3d id: 1c3d alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3d/nostruct-align/1c3d.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3d/nostruct-align/1c3d.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3d/nostruct-align/1c3d.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6653/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.854858 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c3jA id: 1c3jA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3jA/nostruct-align/1c3jA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3jA/nostruct-align/1c3jA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3jA/nostruct-align/1c3jA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32392/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.241821 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c3mA id: 1c3mA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3mA/nostruct-align/1c3mA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3mA/nostruct-align/1c3mA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3mA/nostruct-align/1c3mA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1999/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.201904 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c3oA id: 1c3oA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3oA/nostruct-align/1c3oA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3oA/nostruct-align/1c3oA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3oA/nostruct-align/1c3oA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13234/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.706909 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c3oB id: 1c3oB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3oB/nostruct-align/1c3oB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3oB/nostruct-align/1c3oB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3oB/nostruct-align/1c3oB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13021/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.421875 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c3oC id: 1c3oC alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3oC/nostruct-align/1c3oC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3oC/nostruct-align/1c3oC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3oC/nostruct-align/1c3oC.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27344/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.713989 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c3oE id: 1c3oE alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3oE/nostruct-align/1c3oE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3oE/nostruct-align/1c3oE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3oE/nostruct-align/1c3oE.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19143/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.566895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c3oG id: 1c3oG alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3oG/nostruct-align/1c3oG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3oG/nostruct-align/1c3oG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3oG/nostruct-align/1c3oG.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2557/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.678955 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c3pA id: 1c3pA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3pA/nostruct-align/1c3pA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3pA/nostruct-align/1c3pA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3pA/nostruct-align/1c3pA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4873/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.077881 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c3qA id: 1c3qA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3qA/nostruct-align/1c3qA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3qA/nostruct-align/1c3qA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3qA/nostruct-align/1c3qA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27182/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.715942 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c3wA id: 1c3wA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3wA/nostruct-align/1c3wA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3wA/nostruct-align/1c3wA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3wA/nostruct-align/1c3wA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3687/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.883911 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c3yA id: 1c3yA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3yA/nostruct-align/1c3yA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3yA/nostruct-align/1c3yA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3yA/nostruct-align/1c3yA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7822/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.113892 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c4eA id: 1c4eA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c4eA/nostruct-align/1c4eA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c4eA/nostruct-align/1c4eA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c4eA/nostruct-align/1c4eA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2446/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.846924 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c4xA id: 1c4xA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c4xA/nostruct-align/1c4xA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c4xA/nostruct-align/1c4xA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c4xA/nostruct-align/1c4xA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1651/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.725830 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c4zA id: 1c4zA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c4zA/nostruct-align/1c4zA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c4zA/nostruct-align/1c4zA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c4zA/nostruct-align/1c4zA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20381/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.950928 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c52 id: 1c52 alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c52/nostruct-align/1c52.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c52/nostruct-align/1c52.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c52/nostruct-align/1c52.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30475/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.360840 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c53 id: 1c53 alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c53/nostruct-align/1c53.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c53/nostruct-align/1c53.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c53/nostruct-align/1c53.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2769/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.468872 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c5a id: 1c5a alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c5a/nostruct-align/1c5a.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c5a/nostruct-align/1c5a.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c5a/nostruct-align/1c5a.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-2823/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.951904 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c5eA id: 1c5eA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c5eA/nostruct-align/1c5eA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c5eA/nostruct-align/1c5eA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c5eA/nostruct-align/1c5eA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10007/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.717896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c75A id: 1c75A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c75A/nostruct-align/1c75A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c75A/nostruct-align/1c75A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c75A/nostruct-align/1c75A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16321/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.116943 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c8zA id: 1c8zA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c8zA/nostruct-align/1c8zA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c8zA/nostruct-align/1c8zA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c8zA/nostruct-align/1c8zA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16451/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.369873 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c94A id: 1c94A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c94A/nostruct-align/1c94A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c94A/nostruct-align/1c94A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c94A/nostruct-align/1c94A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6943/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.825928 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c9fA id: 1c9fA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c9fA/nostruct-align/1c9fA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c9fA/nostruct-align/1c9fA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c9fA/nostruct-align/1c9fA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9738/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.115845 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c9kB id: 1c9kB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c9kB/nostruct-align/1c9kB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c9kB/nostruct-align/1c9kB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c9kB/nostruct-align/1c9kB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22999/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.828857 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c9oA id: 1c9oA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c9oA/nostruct-align/1c9oA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c9oA/nostruct-align/1c9oA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c9oA/nostruct-align/1c9oA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10101/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.378906 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1c9uA id: 1c9uA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c9uA/nostruct-align/1c9uA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c9uA/nostruct-align/1c9uA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c9uA/nostruct-align/1c9uA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19268/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.286865 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ca1 id: 1ca1 alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ca1/nostruct-align/1ca1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ca1/nostruct-align/1ca1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ca1/nostruct-align/1ca1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9816/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.747925 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ca4A id: 1ca4A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ca4A/nostruct-align/1ca4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ca4A/nostruct-align/1ca4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ca4A/nostruct-align/1ca4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20334/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.112915 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ca9A id: 1ca9A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ca9A/nostruct-align/1ca9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ca9A/nostruct-align/1ca9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ca9A/nostruct-align/1ca9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29274/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.180786 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1caj id: 1caj alignment found: /projects/compbio/experiments/models.97/pdb/1c/1caj/nostruct-align/1caj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1caj/nostruct-align/1caj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1caj/nostruct-align/1caj.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30674/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.350952 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cauA id: 1cauA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cauA/nostruct-align/1cauA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cauA/nostruct-align/1cauA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cauA/nostruct-align/1cauA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25294/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.799927 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cauB id: 1cauB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cauB/nostruct-align/1cauB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cauB/nostruct-align/1cauB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cauB/nostruct-align/1cauB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23282/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.563965 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cawB id: 1cawB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cawB/nostruct-align/1cawB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cawB/nostruct-align/1cawB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cawB/nostruct-align/1cawB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13400/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.563965 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1caxB id: 1caxB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1caxB/nostruct-align/1caxB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1caxB/nostruct-align/1caxB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1caxB/nostruct-align/1caxB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26345/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.357910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cb0A id: 1cb0A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cb0A/nostruct-align/1cb0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cb0A/nostruct-align/1cb0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cb0A/nostruct-align/1cb0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26603/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.959961 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cb6A id: 1cb6A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cb6A/nostruct-align/1cb6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cb6A/nostruct-align/1cb6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cb6A/nostruct-align/1cb6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4671/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.434937 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cb7B id: 1cb7B alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cb7B/nostruct-align/1cb7B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cb7B/nostruct-align/1cb7B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cb7B/nostruct-align/1cb7B.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19122/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.969971 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cb8A id: 1cb8A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cb8A/nostruct-align/1cb8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cb8A/nostruct-align/1cb8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cb8A/nostruct-align/1cb8A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2719/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.864990 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cbf id: 1cbf alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cbf/nostruct-align/1cbf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cbf/nostruct-align/1cbf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cbf/nostruct-align/1cbf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21466/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.627930 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cbg id: 1cbg alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cbg/nostruct-align/1cbg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cbg/nostruct-align/1cbg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cbg/nostruct-align/1cbg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5977/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.935913 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cbh id: 1cbh alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cbh/nostruct-align/1cbh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cbh/nostruct-align/1cbh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cbh/nostruct-align/1cbh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18023/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.883911 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cbn id: 1cbn alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cbn/nostruct-align/1cbn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cbn/nostruct-align/1cbn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cbn/nostruct-align/1cbn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19424/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.115967 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cbp id: 1cbp alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cbp/nostruct-align/1cbp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cbp/nostruct-align/1cbp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cbp/nostruct-align/1cbp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18202/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.967896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cbs id: 1cbs alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cbs/nostruct-align/1cbs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cbs/nostruct-align/1cbs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cbs/nostruct-align/1cbs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-412/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.948975 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cbuA id: 1cbuA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cbuA/nostruct-align/1cbuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cbuA/nostruct-align/1cbuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cbuA/nostruct-align/1cbuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6165/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.828857 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cby id: 1cby alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cby/nostruct-align/1cby.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cby/nostruct-align/1cby.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cby/nostruct-align/1cby.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8991/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.703857 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cc5 id: 1cc5 alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cc5/nostruct-align/1cc5.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cc5/nostruct-align/1cc5.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cc5/nostruct-align/1cc5.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5459/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.054932 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cc8A id: 1cc8A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cc8A/nostruct-align/1cc8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cc8A/nostruct-align/1cc8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cc8A/nostruct-align/1cc8A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29328/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.953003 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ccr id: 1ccr alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ccr/nostruct-align/1ccr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ccr/nostruct-align/1ccr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ccr/nostruct-align/1ccr.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14887/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.716797 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ccwA id: 1ccwA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ccwA/nostruct-align/1ccwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ccwA/nostruct-align/1ccwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ccwA/nostruct-align/1ccwA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1785/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.396973 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ccwB id: 1ccwB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ccwB/nostruct-align/1ccwB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ccwB/nostruct-align/1ccwB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ccwB/nostruct-align/1ccwB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23017/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.969971 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cczA id: 1cczA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cczA/nostruct-align/1cczA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cczA/nostruct-align/1cczA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cczA/nostruct-align/1cczA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1782/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.894897 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cd1A id: 1cd1A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cd1A/nostruct-align/1cd1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cd1A/nostruct-align/1cd1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cd1A/nostruct-align/1cd1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8721/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.052856 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cd31 id: 1cd31 alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cd31/nostruct-align/1cd31.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cd31/nostruct-align/1cd31.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cd31/nostruct-align/1cd31.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17058/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.514893 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cd3B id: 1cd3B alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cd3B/nostruct-align/1cd3B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cd3B/nostruct-align/1cd3B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cd3B/nostruct-align/1cd3B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23258/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.586914 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cd8 id: 1cd8 alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cd8/nostruct-align/1cd8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cd8/nostruct-align/1cd8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cd8/nostruct-align/1cd8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20838/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.168945 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cd9C id: 1cd9C alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cd9C/nostruct-align/1cd9C.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cd9C/nostruct-align/1cd9C.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cd9C/nostruct-align/1cd9C.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32517/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.129883 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cdcA id: 1cdcA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdcA/nostruct-align/1cdcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdcA/nostruct-align/1cdcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cdcA/nostruct-align/1cdcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27370/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.492920 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cdcB id: 1cdcB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdcB/nostruct-align/1cdcB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdcB/nostruct-align/1cdcB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cdcB/nostruct-align/1cdcB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22765/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.493896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cdg_1 id: 1cdg_1 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cdg_1/nostruct-align/1cdg_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cdg_1/nostruct-align/1cdg_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1cdg_1/nostruct-align/1cdg_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6722/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.426880 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cdg_2 id: 1cdg_2 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cdg_2/nostruct-align/1cdg_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cdg_2/nostruct-align/1cdg_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1cdg_2/nostruct-align/1cdg_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21082/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.092896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cdg_3 id: 1cdg_3 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cdg_3/nostruct-align/1cdg_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cdg_3/nostruct-align/1cdg_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1cdg_3/nostruct-align/1cdg_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30634/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.980835 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cdg_4 id: 1cdg_4 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cdg_4/nostruct-align/1cdg_4.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cdg_4/nostruct-align/1cdg_4.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1cdg_4/nostruct-align/1cdg_4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7233/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.052002 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cdi id: 1cdi alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdi/nostruct-align/1cdi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdi/nostruct-align/1cdi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cdi/nostruct-align/1cdi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26281/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.175903 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cdkA id: 1cdkA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdkA/nostruct-align/1cdkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdkA/nostruct-align/1cdkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cdkA/nostruct-align/1cdkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16105/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.523926 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cdp id: 1cdp alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdp/nostruct-align/1cdp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdp/nostruct-align/1cdp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cdp/nostruct-align/1cdp.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19312/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.939941 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cdq id: 1cdq alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdq/nostruct-align/1cdq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdq/nostruct-align/1cdq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cdq/nostruct-align/1cdq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9093/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.188843 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cds id: 1cds alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cds/nostruct-align/1cds.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cds/nostruct-align/1cds.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cds/nostruct-align/1cds.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13366/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.188843 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cdwA id: 1cdwA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdwA/nostruct-align/1cdwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdwA/nostruct-align/1cdwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cdwA/nostruct-align/1cdwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13494/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.854980 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cdy id: 1cdy alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdy/nostruct-align/1cdy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdy/nostruct-align/1cdy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cdy/nostruct-align/1cdy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17303/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.970825 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cdzA id: 1cdzA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdzA/nostruct-align/1cdzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdzA/nostruct-align/1cdzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cdzA/nostruct-align/1cdzA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-138/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.113892 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ce0A id: 1ce0A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ce0A/nostruct-align/1ce0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ce0A/nostruct-align/1ce0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ce0A/nostruct-align/1ce0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5605/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.914795 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ce3A id: 1ce3A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ce3A/nostruct-align/1ce3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ce3A/nostruct-align/1ce3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ce3A/nostruct-align/1ce3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12646/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.088867 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ce4A id: 1ce4A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ce4A/nostruct-align/1ce4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ce4A/nostruct-align/1ce4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ce4A/nostruct-align/1ce4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20294/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.796875 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ce9C id: 1ce9C alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ce9C/nostruct-align/1ce9C.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ce9C/nostruct-align/1ce9C.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ce9C/nostruct-align/1ce9C.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4846/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.930908 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cec id: 1cec alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cec/nostruct-align/1cec.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cec/nostruct-align/1cec.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cec/nostruct-align/1cec.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31869/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.704834 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ceeB id: 1ceeB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ceeB/nostruct-align/1ceeB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ceeB/nostruct-align/1ceeB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ceeB/nostruct-align/1ceeB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27195/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.175903 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cei id: 1cei alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cei/nostruct-align/1cei.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cei/nostruct-align/1cei.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cei/nostruct-align/1cei.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9886/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.638916 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1celA id: 1celA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1celA/nostruct-align/1celA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1celA/nostruct-align/1celA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1celA/nostruct-align/1celA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2441/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.644897 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cem id: 1cem alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cem/nostruct-align/1cem.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cem/nostruct-align/1cem.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cem/nostruct-align/1cem.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2306/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.060913 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ceo id: 1ceo alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ceo/nostruct-align/1ceo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ceo/nostruct-align/1ceo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ceo/nostruct-align/1ceo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1858/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.371826 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ceqA id: 1ceqA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ceqA/nostruct-align/1ceqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ceqA/nostruct-align/1ceqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ceqA/nostruct-align/1ceqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4193/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.683960 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ceuA id: 1ceuA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ceuA/nostruct-align/1ceuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ceuA/nostruct-align/1ceuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ceuA/nostruct-align/1ceuA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11768/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.995850 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cewI id: 1cewI alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cewI/nostruct-align/1cewI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cewI/nostruct-align/1cewI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cewI/nostruct-align/1cewI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14792/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.459961 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cex id: 1cex alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cex/nostruct-align/1cex.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cex/nostruct-align/1cex.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cex/nostruct-align/1cex.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7014/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.594849 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cezA id: 1cezA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cezA/nostruct-align/1cezA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cezA/nostruct-align/1cezA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cezA/nostruct-align/1cezA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1512/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.972900 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cf1A id: 1cf1A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cf1A/nostruct-align/1cf1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cf1A/nostruct-align/1cf1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cf1A/nostruct-align/1cf1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3292/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.116943 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cf4B id: 1cf4B alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cf4B/nostruct-align/1cf4B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cf4B/nostruct-align/1cf4B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cf4B/nostruct-align/1cf4B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27160/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.655884 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cf7A id: 1cf7A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cf7A/nostruct-align/1cf7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cf7A/nostruct-align/1cf7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cf7A/nostruct-align/1cf7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20396/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.861938 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cf7B id: 1cf7B alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cf7B/nostruct-align/1cf7B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cf7B/nostruct-align/1cf7B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cf7B/nostruct-align/1cf7B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22020/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.203857 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cf9A id: 1cf9A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cf9A/nostruct-align/1cf9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cf9A/nostruct-align/1cf9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cf9A/nostruct-align/1cf9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28520/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.543945 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cfb id: 1cfb alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cfb/nostruct-align/1cfb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cfb/nostruct-align/1cfb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cfb/nostruct-align/1cfb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31449/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.976807 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cfb_1 id: 1cfb_1 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cfb_1/nostruct-align/1cfb_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cfb_1/nostruct-align/1cfb_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1cfb_1/nostruct-align/1cfb_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16029/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.602905 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cfb_2 id: 1cfb_2 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cfb_2/nostruct-align/1cfb_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cfb_2/nostruct-align/1cfb_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1cfb_2/nostruct-align/1cfb_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13622/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.467896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cfe id: 1cfe alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cfe/nostruct-align/1cfe.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cfe/nostruct-align/1cfe.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cfe/nostruct-align/1cfe.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16086/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.146851 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cfh id: 1cfh alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cfh/nostruct-align/1cfh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cfh/nostruct-align/1cfh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cfh/nostruct-align/1cfh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21249/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.591919 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cfi id: 1cfi alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cfi/nostruct-align/1cfi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cfi/nostruct-align/1cfi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cfi/nostruct-align/1cfi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27664/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.591919 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cfr id: 1cfr alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cfr/nostruct-align/1cfr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cfr/nostruct-align/1cfr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cfr/nostruct-align/1cfr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12336/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.880981 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cfyA id: 1cfyA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cfyA/nostruct-align/1cfyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cfyA/nostruct-align/1cfyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cfyA/nostruct-align/1cfyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31258/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.896851 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cfzA id: 1cfzA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cfzA/nostruct-align/1cfzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cfzA/nostruct-align/1cfzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cfzA/nostruct-align/1cfzA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5535/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.983887 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cg2A id: 1cg2A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cg2A/nostruct-align/1cg2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cg2A/nostruct-align/1cg2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cg2A/nostruct-align/1cg2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9303/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.860962 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cg5A id: 1cg5A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cg5A/nostruct-align/1cg5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cg5A/nostruct-align/1cg5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cg5A/nostruct-align/1cg5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18448/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.340820 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cg5B id: 1cg5B alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cg5B/nostruct-align/1cg5B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cg5B/nostruct-align/1cg5B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cg5B/nostruct-align/1cg5B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27627/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.411865 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cgdA id: 1cgdA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cgdA/nostruct-align/1cgdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cgdA/nostruct-align/1cgdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cgdA/nostruct-align/1cgdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20496/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.210815 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cghA id: 1cghA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cghA/nostruct-align/1cghA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cghA/nostruct-align/1cghA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cghA/nostruct-align/1cghA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5529/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.728882 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cgo id: 1cgo alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cgo/nostruct-align/1cgo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cgo/nostruct-align/1cgo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cgo/nostruct-align/1cgo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31018/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.399902 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cgpA_1 id: 1cgpA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cgpA_1/nostruct-align/1cgpA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cgpA_1/nostruct-align/1cgpA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1cgpA_1/nostruct-align/1cgpA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14419/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.240967 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cgpA_2 id: 1cgpA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cgpA_2/nostruct-align/1cgpA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cgpA_2/nostruct-align/1cgpA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1cgpA_2/nostruct-align/1cgpA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-79/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.673828 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cgt id: 1cgt alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cgt/nostruct-align/1cgt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cgt/nostruct-align/1cgt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cgt/nostruct-align/1cgt.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28996/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.993896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ch6A id: 1ch6A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ch6A/nostruct-align/1ch6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ch6A/nostruct-align/1ch6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ch6A/nostruct-align/1ch6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30360/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.110962 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1chc id: 1chc alignment found: /projects/compbio/experiments/models.97/pdb/1c/1chc/nostruct-align/1chc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1chc/nostruct-align/1chc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1chc/nostruct-align/1chc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19220/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.849854 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1chd id: 1chd alignment found: /projects/compbio/experiments/models.97/pdb/1c/1chd/nostruct-align/1chd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1chd/nostruct-align/1chd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1chd/nostruct-align/1chd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2692/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.733887 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1chkA id: 1chkA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1chkA/nostruct-align/1chkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1chkA/nostruct-align/1chkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1chkA/nostruct-align/1chkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8020/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.156860 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1chl id: 1chl alignment found: /projects/compbio/experiments/models.97/pdb/1c/1chl/nostruct-align/1chl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1chl/nostruct-align/1chl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1chl/nostruct-align/1chl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16478/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.063965 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1chmA id: 1chmA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1chmA/nostruct-align/1chmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1chmA/nostruct-align/1chmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1chmA/nostruct-align/1chmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20731/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.526978 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1chmA_1 id: 1chmA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1chmA_1/nostruct-align/1chmA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1chmA_1/nostruct-align/1chmA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1chmA_1/nostruct-align/1chmA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31669/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.671875 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1chmA_2 id: 1chmA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1chmA_2/nostruct-align/1chmA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1chmA_2/nostruct-align/1chmA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1chmA_2/nostruct-align/1chmA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12087/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.519897 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1chrA id: 1chrA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1chrA/nostruct-align/1chrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1chrA/nostruct-align/1chrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1chrA/nostruct-align/1chrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28523/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -178.038818 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1chuA id: 1chuA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1chuA/nostruct-align/1chuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1chuA/nostruct-align/1chuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1chuA/nostruct-align/1chuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31770/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.069946 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ci0A id: 1ci0A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ci0A/nostruct-align/1ci0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ci0A/nostruct-align/1ci0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ci0A/nostruct-align/1ci0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2075/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.513916 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cid id: 1cid alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cid/nostruct-align/1cid.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cid/nostruct-align/1cid.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cid/nostruct-align/1cid.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2756/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.890869 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cid_1 id: 1cid_1 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cid_1/nostruct-align/1cid_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cid_1/nostruct-align/1cid_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1cid_1/nostruct-align/1cid_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7983/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.157959 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cid_2 id: 1cid_2 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cid_2/nostruct-align/1cid_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cid_2/nostruct-align/1cid_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1cid_2/nostruct-align/1cid_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18117/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.725952 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cii id: 1cii alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cii/nostruct-align/1cii.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cii/nostruct-align/1cii.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cii/nostruct-align/1cii.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5395/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -20.223877 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cipA id: 1cipA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cipA/nostruct-align/1cipA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cipA/nostruct-align/1cipA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cipA/nostruct-align/1cipA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32633/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.160889 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ciy id: 1ciy alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ciy/nostruct-align/1ciy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ciy/nostruct-align/1ciy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ciy/nostruct-align/1ciy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15785/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.948975 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cjaA id: 1cjaA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cjaA/nostruct-align/1cjaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cjaA/nostruct-align/1cjaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cjaA/nostruct-align/1cjaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32497/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.933960 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cjcA id: 1cjcA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cjcA/nostruct-align/1cjcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cjcA/nostruct-align/1cjcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cjcA/nostruct-align/1cjcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16717/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.233887 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cjdA id: 1cjdA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cjdA/nostruct-align/1cjdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cjdA/nostruct-align/1cjdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cjdA/nostruct-align/1cjdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27269/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.821899 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cjsA id: 1cjsA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cjsA/nostruct-align/1cjsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cjsA/nostruct-align/1cjsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cjsA/nostruct-align/1cjsA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15488/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.541870 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cjwA id: 1cjwA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cjwA/nostruct-align/1cjwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cjwA/nostruct-align/1cjwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cjwA/nostruct-align/1cjwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30336/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.253906 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cjxA id: 1cjxA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cjxA/nostruct-align/1cjxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cjxA/nostruct-align/1cjxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cjxA/nostruct-align/1cjxA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27930/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.034912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ck7A id: 1ck7A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ck7A/nostruct-align/1ck7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ck7A/nostruct-align/1ck7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ck7A/nostruct-align/1ck7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4335/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.289917 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ck9A id: 1ck9A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ck9A/nostruct-align/1ck9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ck9A/nostruct-align/1ck9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ck9A/nostruct-align/1ck9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27430/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.360840 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ckaA id: 1ckaA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ckaA/nostruct-align/1ckaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ckaA/nostruct-align/1ckaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ckaA/nostruct-align/1ckaA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26720/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.018921 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ckeA id: 1ckeA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ckeA/nostruct-align/1ckeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ckeA/nostruct-align/1ckeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ckeA/nostruct-align/1ckeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-659/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.769897 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cklB id: 1cklB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cklB/nostruct-align/1cklB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cklB/nostruct-align/1cklB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cklB/nostruct-align/1cklB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14066/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.333008 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ckmA id: 1ckmA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ckmA/nostruct-align/1ckmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ckmA/nostruct-align/1ckmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ckmA/nostruct-align/1ckmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31731/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.990845 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cknA id: 1cknA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cknA/nostruct-align/1cknA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cknA/nostruct-align/1cknA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cknA/nostruct-align/1cknA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13387/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.702881 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ckqA id: 1ckqA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ckqA/nostruct-align/1ckqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ckqA/nostruct-align/1ckqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ckqA/nostruct-align/1ckqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18581/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.561890 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cktA id: 1cktA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cktA/nostruct-align/1cktA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cktA/nostruct-align/1cktA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cktA/nostruct-align/1cktA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25602/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.870850 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ckuA id: 1ckuA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ckuA/nostruct-align/1ckuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ckuA/nostruct-align/1ckuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ckuA/nostruct-align/1ckuA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7537/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.029907 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ckv id: 1ckv alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ckv/nostruct-align/1ckv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ckv/nostruct-align/1ckv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ckv/nostruct-align/1ckv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5672/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.711914 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cl1A id: 1cl1A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cl1A/nostruct-align/1cl1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cl1A/nostruct-align/1cl1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cl1A/nostruct-align/1cl1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-913/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.489868 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cl2A id: 1cl2A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cl2A/nostruct-align/1cl2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cl2A/nostruct-align/1cl2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cl2A/nostruct-align/1cl2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27932/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.130859 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cl4A id: 1cl4A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cl4A/nostruct-align/1cl4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cl4A/nostruct-align/1cl4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cl4A/nostruct-align/1cl4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6068/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.520874 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1clc id: 1clc alignment found: /projects/compbio/experiments/models.97/pdb/1c/1clc/nostruct-align/1clc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1clc/nostruct-align/1clc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1clc/nostruct-align/1clc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3775/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.861938 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1clc_1 id: 1clc_1 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1clc_1/nostruct-align/1clc_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1clc_1/nostruct-align/1clc_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1clc_1/nostruct-align/1clc_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6264/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.680786 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1clc_2 id: 1clc_2 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1clc_2/nostruct-align/1clc_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1clc_2/nostruct-align/1clc_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1clc_2/nostruct-align/1clc_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6347/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.682983 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cleA id: 1cleA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cleA/nostruct-align/1cleA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cleA/nostruct-align/1cleA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cleA/nostruct-align/1cleA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22723/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.919922 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cliA id: 1cliA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cliA/nostruct-align/1cliA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cliA/nostruct-align/1cliA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cliA/nostruct-align/1cliA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18183/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.077881 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cll id: 1cll alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cll/nostruct-align/1cll.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cll/nostruct-align/1cll.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cll/nostruct-align/1cll.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8311/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.266968 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1clqA id: 1clqA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1clqA/nostruct-align/1clqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1clqA/nostruct-align/1clqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1clqA/nostruct-align/1clqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31423/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.856812 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1clxA id: 1clxA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1clxA/nostruct-align/1clxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1clxA/nostruct-align/1clxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1clxA/nostruct-align/1clxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19992/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.272827 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cm4B id: 1cm4B alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cm4B/nostruct-align/1cm4B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cm4B/nostruct-align/1cm4B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cm4B/nostruct-align/1cm4B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17701/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.759888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cm5A id: 1cm5A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cm5A/nostruct-align/1cm5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cm5A/nostruct-align/1cm5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cm5A/nostruct-align/1cm5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24430/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.597900 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cmaA id: 1cmaA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cmaA/nostruct-align/1cmaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cmaA/nostruct-align/1cmaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cmaA/nostruct-align/1cmaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4512/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.458862 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cmbA id: 1cmbA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cmbA/nostruct-align/1cmbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cmbA/nostruct-align/1cmbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cmbA/nostruct-align/1cmbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28897/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.443970 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cmkE id: 1cmkE alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cmkE/nostruct-align/1cmkE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cmkE/nostruct-align/1cmkE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cmkE/nostruct-align/1cmkE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10615/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.694946 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cmnA id: 1cmnA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cmnA/nostruct-align/1cmnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cmnA/nostruct-align/1cmnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cmnA/nostruct-align/1cmnA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16561/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.533813 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cmoA id: 1cmoA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cmoA/nostruct-align/1cmoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cmoA/nostruct-align/1cmoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cmoA/nostruct-align/1cmoA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21886/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.506958 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cmr id: 1cmr alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cmr/nostruct-align/1cmr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cmr/nostruct-align/1cmr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cmr/nostruct-align/1cmr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16633/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.731812 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cne id: 1cne alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cne/nostruct-align/1cne.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cne/nostruct-align/1cne.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cne/nostruct-align/1cne.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31429/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.398926 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cnr id: 1cnr alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cnr/nostruct-align/1cnr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cnr/nostruct-align/1cnr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cnr/nostruct-align/1cnr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31724/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.115845 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cnsA id: 1cnsA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cnsA/nostruct-align/1cnsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cnsA/nostruct-align/1cnsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cnsA/nostruct-align/1cnsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9285/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.192993 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cnt2 id: 1cnt2 alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cnt2/nostruct-align/1cnt2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cnt2/nostruct-align/1cnt2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cnt2/nostruct-align/1cnt2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1419/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.925903 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cnt3 id: 1cnt3 alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cnt3/nostruct-align/1cnt3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cnt3/nostruct-align/1cnt3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cnt3/nostruct-align/1cnt3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25906/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.373901 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cnv id: 1cnv alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cnv/nostruct-align/1cnv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cnv/nostruct-align/1cnv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cnv/nostruct-align/1cnv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28601/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.778931 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cnzA id: 1cnzA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cnzA/nostruct-align/1cnzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cnzA/nostruct-align/1cnzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cnzA/nostruct-align/1cnzA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5872/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.539917 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1co3A id: 1co3A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1co3A/nostruct-align/1co3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1co3A/nostruct-align/1co3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1co3A/nostruct-align/1co3A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13968/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.904907 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1co4A id: 1co4A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1co4A/nostruct-align/1co4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1co4A/nostruct-align/1co4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1co4A/nostruct-align/1co4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30213/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.748901 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1co6A id: 1co6A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1co6A/nostruct-align/1co6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1co6A/nostruct-align/1co6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1co6A/nostruct-align/1co6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21051/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.829834 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1coaI id: 1coaI alignment found: /projects/compbio/experiments/models.97/pdb/1c/1coaI/nostruct-align/1coaI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1coaI/nostruct-align/1coaI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1coaI/nostruct-align/1coaI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20216/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.899902 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cof id: 1cof alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cof/nostruct-align/1cof.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cof/nostruct-align/1cof.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cof/nostruct-align/1cof.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12370/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.075806 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cojA id: 1cojA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cojA/nostruct-align/1cojA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cojA/nostruct-align/1cojA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cojA/nostruct-align/1cojA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32505/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.008911 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cokA id: 1cokA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cokA/nostruct-align/1cokA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cokA/nostruct-align/1cokA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cokA/nostruct-align/1cokA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23290/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.763916 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1colA id: 1colA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1colA/nostruct-align/1colA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1colA/nostruct-align/1colA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1colA/nostruct-align/1colA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20869/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.873901 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1coo id: 1coo alignment found: /projects/compbio/experiments/models.97/pdb/1c/1coo/nostruct-align/1coo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1coo/nostruct-align/1coo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1coo/nostruct-align/1coo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12238/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.320923 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1copD id: 1copD alignment found: /projects/compbio/experiments/models.97/pdb/1c/1copD/nostruct-align/1copD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1copD/nostruct-align/1copD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1copD/nostruct-align/1copD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22343/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.200928 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cor id: 1cor alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cor/nostruct-align/1cor.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cor/nostruct-align/1cor.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cor/nostruct-align/1cor.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-637/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.493896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cot id: 1cot alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cot/nostruct-align/1cot.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cot/nostruct-align/1cot.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cot/nostruct-align/1cot.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1510/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.652954 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1coy_1 id: 1coy_1 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1coy_1/nostruct-align/1coy_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1coy_1/nostruct-align/1coy_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1coy_1/nostruct-align/1coy_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4752/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.865845 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1coy_2 id: 1coy_2 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1coy_2/nostruct-align/1coy_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1coy_2/nostruct-align/1coy_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1coy_2/nostruct-align/1coy_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23681/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.976929 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cozA id: 1cozA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cozA/nostruct-align/1cozA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cozA/nostruct-align/1cozA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cozA/nostruct-align/1cozA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6533/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.779907 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cp2A id: 1cp2A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cp2A/nostruct-align/1cp2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cp2A/nostruct-align/1cp2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cp2A/nostruct-align/1cp2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2001/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.703857 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cpcA id: 1cpcA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cpcA/nostruct-align/1cpcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cpcA/nostruct-align/1cpcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cpcA/nostruct-align/1cpcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8245/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.250854 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cpcB id: 1cpcB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cpcB/nostruct-align/1cpcB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cpcB/nostruct-align/1cpcB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cpcB/nostruct-align/1cpcB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28938/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.365845 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cpcL id: 1cpcL alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cpcL/nostruct-align/1cpcL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cpcL/nostruct-align/1cpcL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cpcL/nostruct-align/1cpcL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4695/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.272949 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cpn id: 1cpn alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cpn/nostruct-align/1cpn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cpn/nostruct-align/1cpn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cpn/nostruct-align/1cpn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24682/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.415894 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cpo id: 1cpo alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cpo/nostruct-align/1cpo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cpo/nostruct-align/1cpo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cpo/nostruct-align/1cpo.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15331/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.909912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cpq id: 1cpq alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cpq/nostruct-align/1cpq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cpq/nostruct-align/1cpq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cpq/nostruct-align/1cpq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11481/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.784912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cpt id: 1cpt alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cpt/nostruct-align/1cpt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cpt/nostruct-align/1cpt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cpt/nostruct-align/1cpt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20895/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.757935 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cq3A id: 1cq3A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cq3A/nostruct-align/1cq3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cq3A/nostruct-align/1cq3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cq3A/nostruct-align/1cq3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6918/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.648804 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cqeA id: 1cqeA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cqeA/nostruct-align/1cqeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cqeA/nostruct-align/1cqeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cqeA/nostruct-align/1cqeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25907/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.222900 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cqkA id: 1cqkA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cqkA/nostruct-align/1cqkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cqkA/nostruct-align/1cqkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cqkA/nostruct-align/1cqkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7787/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.184937 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cqqA id: 1cqqA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cqqA/nostruct-align/1cqqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cqqA/nostruct-align/1cqqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cqqA/nostruct-align/1cqqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3994/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.697876 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cqwA id: 1cqwA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cqwA/nostruct-align/1cqwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cqwA/nostruct-align/1cqwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cqwA/nostruct-align/1cqwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8455/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.393799 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cqxA id: 1cqxA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cqxA/nostruct-align/1cqxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cqxA/nostruct-align/1cqxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cqxA/nostruct-align/1cqxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18855/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.512817 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cqyA id: 1cqyA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cqyA/nostruct-align/1cqyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cqyA/nostruct-align/1cqyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cqyA/nostruct-align/1cqyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14160/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.527954 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cr1A id: 1cr1A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cr1A/nostruct-align/1cr1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cr1A/nostruct-align/1cr1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cr1A/nostruct-align/1cr1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3998/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.616943 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cr5A id: 1cr5A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cr5A/nostruct-align/1cr5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cr5A/nostruct-align/1cr5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cr5A/nostruct-align/1cr5A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17304/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.819946 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cr6B id: 1cr6B alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cr6B/nostruct-align/1cr6B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cr6B/nostruct-align/1cr6B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cr6B/nostruct-align/1cr6B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16293/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.993896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1crl id: 1crl alignment found: /projects/compbio/experiments/models.97/pdb/1c/1crl/nostruct-align/1crl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1crl/nostruct-align/1crl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1crl/nostruct-align/1crl.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16110/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.558960 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cruA id: 1cruA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cruA/nostruct-align/1cruA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cruA/nostruct-align/1cruA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cruA/nostruct-align/1cruA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9266/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.832886 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cs0B id: 1cs0B alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cs0B/nostruct-align/1cs0B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cs0B/nostruct-align/1cs0B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cs0B/nostruct-align/1cs0B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5289/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.794922 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cs0C id: 1cs0C alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cs0C/nostruct-align/1cs0C.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cs0C/nostruct-align/1cs0C.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cs0C/nostruct-align/1cs0C.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17495/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.601929 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cs1A id: 1cs1A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cs1A/nostruct-align/1cs1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cs1A/nostruct-align/1cs1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cs1A/nostruct-align/1cs1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5073/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.578857 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cs6A id: 1cs6A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cs6A/nostruct-align/1cs6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cs6A/nostruct-align/1cs6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cs6A/nostruct-align/1cs6A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23053/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -20.837891 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cs8A id: 1cs8A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cs8A/nostruct-align/1cs8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cs8A/nostruct-align/1cs8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cs8A/nostruct-align/1cs8A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file ./tmp/tmp-build-weighted-model-alpha-6366/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.695923 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1csbB id: 1csbB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1csbB/nostruct-align/1csbB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1csbB/nostruct-align/1csbB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1csbB/nostruct-align/1csbB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26953/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.609009 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cseE id: 1cseE alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cseE/nostruct-align/1cseE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cseE/nostruct-align/1cseE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cseE/nostruct-align/1cseE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9337/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.364868 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cseI id: 1cseI alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cseI/nostruct-align/1cseI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cseI/nostruct-align/1cseI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cseI/nostruct-align/1cseI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7982/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.151855 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1csgA id: 1csgA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1csgA/nostruct-align/1csgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1csgA/nostruct-align/1csgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1csgA/nostruct-align/1csgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16182/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.153931 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1csh id: 1csh alignment found: /projects/compbio/experiments/models.97/pdb/1c/1csh/nostruct-align/1csh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1csh/nostruct-align/1csh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1csh/nostruct-align/1csh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24820/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.499878 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cskA id: 1cskA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cskA/nostruct-align/1cskA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cskA/nostruct-align/1cskA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cskA/nostruct-align/1cskA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-24476/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.177979 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1csmA id: 1csmA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1csmA/nostruct-align/1csmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1csmA/nostruct-align/1csmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1csmA/nostruct-align/1csmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22790/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.522949 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1csn id: 1csn alignment found: /projects/compbio/experiments/models.97/pdb/1c/1csn/nostruct-align/1csn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1csn/nostruct-align/1csn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1csn/nostruct-align/1csn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21490/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.371948 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ct5A id: 1ct5A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ct5A/nostruct-align/1ct5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ct5A/nostruct-align/1ct5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ct5A/nostruct-align/1ct5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4571/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.232910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ct7A id: 1ct7A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ct7A/nostruct-align/1ct7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ct7A/nostruct-align/1ct7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ct7A/nostruct-align/1ct7A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.523926 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ct9A id: 1ct9A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ct9A/nostruct-align/1ct9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ct9A/nostruct-align/1ct9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ct9A/nostruct-align/1ct9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15376/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.721802 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ctdA id: 1ctdA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ctdA/nostruct-align/1ctdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ctdA/nostruct-align/1ctdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ctdA/nostruct-align/1ctdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30572/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.547852 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ctf id: 1ctf alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ctf/nostruct-align/1ctf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ctf/nostruct-align/1ctf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ctf/nostruct-align/1ctf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14236/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.485840 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ctj id: 1ctj alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ctj/nostruct-align/1ctj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ctj/nostruct-align/1ctj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ctj/nostruct-align/1ctj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8052/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.372803 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ctl id: 1ctl alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ctl/nostruct-align/1ctl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ctl/nostruct-align/1ctl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ctl/nostruct-align/1ctl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14412/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.442871 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ctl_1 id: 1ctl_1 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctl_1/nostruct-align/1ctl_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctl_1/nostruct-align/1ctl_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1ctl_1/nostruct-align/1ctl_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24843/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.165894 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ctl_2 id: 1ctl_2 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctl_2/nostruct-align/1ctl_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctl_2/nostruct-align/1ctl_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1ctl_2/nostruct-align/1ctl_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7934/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.007935 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ctm_1 id: 1ctm_1 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctm_1/nostruct-align/1ctm_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctm_1/nostruct-align/1ctm_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1ctm_1/nostruct-align/1ctm_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27635/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.184937 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ctm_2 id: 1ctm_2 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctm_2/nostruct-align/1ctm_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctm_2/nostruct-align/1ctm_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1ctm_2/nostruct-align/1ctm_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19289/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.541870 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ctn id: 1ctn alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ctn/nostruct-align/1ctn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ctn/nostruct-align/1ctn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ctn/nostruct-align/1ctn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16543/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.915894 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ctn_1 id: 1ctn_1 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctn_1/nostruct-align/1ctn_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctn_1/nostruct-align/1ctn_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1ctn_1/nostruct-align/1ctn_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31062/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.054932 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ctn_2 id: 1ctn_2 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctn_2/nostruct-align/1ctn_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctn_2/nostruct-align/1ctn_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1ctn_2/nostruct-align/1ctn_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10081/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.910889 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ctn_3 id: 1ctn_3 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctn_3/nostruct-align/1ctn_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctn_3/nostruct-align/1ctn_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1ctn_3/nostruct-align/1ctn_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31691/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.852905 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cto id: 1cto alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cto/nostruct-align/1cto.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cto/nostruct-align/1cto.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cto/nostruct-align/1cto.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25418/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.227905 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ctqA id: 1ctqA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ctqA/nostruct-align/1ctqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ctqA/nostruct-align/1ctqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ctqA/nostruct-align/1ctqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11776/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.027954 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ctt id: 1ctt alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ctt/nostruct-align/1ctt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ctt/nostruct-align/1ctt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ctt/nostruct-align/1ctt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7725/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.554932 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ctt_1 id: 1ctt_1 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctt_1/nostruct-align/1ctt_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctt_1/nostruct-align/1ctt_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1ctt_1/nostruct-align/1ctt_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13821/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.597900 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ctt_2 id: 1ctt_2 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctt_2/nostruct-align/1ctt_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctt_2/nostruct-align/1ctt_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1ctt_2/nostruct-align/1ctt_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21328/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.485962 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cunA id: 1cunA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cunA/nostruct-align/1cunA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cunA/nostruct-align/1cunA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cunA/nostruct-align/1cunA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9157/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.884888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cur id: 1cur alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cur/nostruct-align/1cur.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cur/nostruct-align/1cur.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cur/nostruct-align/1cur.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32558/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.333862 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cus id: 1cus alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cus/nostruct-align/1cus.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cus/nostruct-align/1cus.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cus/nostruct-align/1cus.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7235/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.539917 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cv8 id: 1cv8 alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cv8/nostruct-align/1cv8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cv8/nostruct-align/1cv8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cv8/nostruct-align/1cv8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-247/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.213867 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cviA id: 1cviA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cviA/nostruct-align/1cviA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cviA/nostruct-align/1cviA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cviA/nostruct-align/1cviA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29151/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.363892 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cvjB id: 1cvjB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cvjB/nostruct-align/1cvjB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cvjB/nostruct-align/1cvjB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cvjB/nostruct-align/1cvjB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23791/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.191895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cvl id: 1cvl alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cvl/nostruct-align/1cvl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cvl/nostruct-align/1cvl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cvl/nostruct-align/1cvl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29581/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.409912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cvrA id: 1cvrA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cvrA/nostruct-align/1cvrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cvrA/nostruct-align/1cvrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cvrA/nostruct-align/1cvrA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9261/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.993896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cvsC id: 1cvsC alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cvsC/nostruct-align/1cvsC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cvsC/nostruct-align/1cvsC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cvsC/nostruct-align/1cvsC.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5087/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.800903 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cw5A id: 1cw5A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cw5A/nostruct-align/1cw5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cw5A/nostruct-align/1cw5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cw5A/nostruct-align/1cw5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20594/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.068848 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cwpA id: 1cwpA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cwpA/nostruct-align/1cwpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cwpA/nostruct-align/1cwpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cwpA/nostruct-align/1cwpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28663/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.752930 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cwvA id: 1cwvA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cwvA/nostruct-align/1cwvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cwvA/nostruct-align/1cwvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cwvA/nostruct-align/1cwvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15289/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.648926 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cwxA id: 1cwxA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cwxA/nostruct-align/1cwxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cwxA/nostruct-align/1cwxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cwxA/nostruct-align/1cwxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6324/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.609985 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cx8B id: 1cx8B alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cx8B/nostruct-align/1cx8B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cx8B/nostruct-align/1cx8B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cx8B/nostruct-align/1cx8B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19572/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.752930 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cxlA id: 1cxlA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cxlA/nostruct-align/1cxlA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cxlA/nostruct-align/1cxlA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cxlA/nostruct-align/1cxlA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2159/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -20.190918 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cxpA id: 1cxpA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cxpA/nostruct-align/1cxpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cxpA/nostruct-align/1cxpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cxpA/nostruct-align/1cxpA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26891/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.515869 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cxpC id: 1cxpC alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cxpC/nostruct-align/1cxpC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cxpC/nostruct-align/1cxpC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cxpC/nostruct-align/1cxpC.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6616/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.874878 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cxqA id: 1cxqA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cxqA/nostruct-align/1cxqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cxqA/nostruct-align/1cxqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cxqA/nostruct-align/1cxqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13348/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.388916 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cxwA id: 1cxwA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cxwA/nostruct-align/1cxwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cxwA/nostruct-align/1cxwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cxwA/nostruct-align/1cxwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27852/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.634888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cxyA id: 1cxyA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cxyA/nostruct-align/1cxyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cxyA/nostruct-align/1cxyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cxyA/nostruct-align/1cxyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28806/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.089844 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cxzB id: 1cxzB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cxzB/nostruct-align/1cxzB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cxzB/nostruct-align/1cxzB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cxzB/nostruct-align/1cxzB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1587/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.976929 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cy5A id: 1cy5A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cy5A/nostruct-align/1cy5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cy5A/nostruct-align/1cy5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cy5A/nostruct-align/1cy5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3972/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.023926 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cydA id: 1cydA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cydA/nostruct-align/1cydA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cydA/nostruct-align/1cydA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cydA/nostruct-align/1cydA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10775/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.926880 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cyi id: 1cyi alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cyi/nostruct-align/1cyi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cyi/nostruct-align/1cyi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cyi/nostruct-align/1cyi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6451/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.062866 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cyj id: 1cyj alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cyj/nostruct-align/1cyj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cyj/nostruct-align/1cyj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cyj/nostruct-align/1cyj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16031/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.196899 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cyo id: 1cyo alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cyo/nostruct-align/1cyo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cyo/nostruct-align/1cyo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cyo/nostruct-align/1cyo.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31848/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.291992 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cyx id: 1cyx alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cyx/nostruct-align/1cyx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cyx/nostruct-align/1cyx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cyx/nostruct-align/1cyx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21772/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.101929 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cz1A id: 1cz1A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cz1A/nostruct-align/1cz1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cz1A/nostruct-align/1cz1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cz1A/nostruct-align/1cz1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12171/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.586914 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cz4A id: 1cz4A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cz4A/nostruct-align/1cz4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cz4A/nostruct-align/1cz4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cz4A/nostruct-align/1cz4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23148/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.676880 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1czfA id: 1czfA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1czfA/nostruct-align/1czfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1czfA/nostruct-align/1czfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1czfA/nostruct-align/1czfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12403/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.352905 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1czpA id: 1czpA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1czpA/nostruct-align/1czpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1czpA/nostruct-align/1czpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1czpA/nostruct-align/1czpA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16549/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.913940 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1czqA id: 1czqA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1czqA/nostruct-align/1czqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1czqA/nostruct-align/1czqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1czqA/nostruct-align/1czqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2950/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.383789 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1czsA id: 1czsA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1czsA/nostruct-align/1czsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1czsA/nostruct-align/1czsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1czsA/nostruct-align/1czsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10593/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.089844 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1cztA id: 1cztA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cztA/nostruct-align/1cztA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cztA/nostruct-align/1cztA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cztA/nostruct-align/1cztA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7850/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.089844 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d02A id: 1d02A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d02A/nostruct-align/1d02A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d02A/nostruct-align/1d02A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d02A/nostruct-align/1d02A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7351/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.009888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d0aB id: 1d0aB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d0aB/nostruct-align/1d0aB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d0aB/nostruct-align/1d0aB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d0aB/nostruct-align/1d0aB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6558/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.806885 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d0bA id: 1d0bA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d0bA/nostruct-align/1d0bA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d0bA/nostruct-align/1d0bA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d0bA/nostruct-align/1d0bA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27614/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -25.894897 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d0nA id: 1d0nA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d0nA/nostruct-align/1d0nA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d0nA/nostruct-align/1d0nA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d0nA/nostruct-align/1d0nA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7519/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.232910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d0qA id: 1d0qA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d0qA/nostruct-align/1d0qA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d0qA/nostruct-align/1d0qA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d0qA/nostruct-align/1d0qA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27288/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.852905 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d0vA id: 1d0vA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d0vA/nostruct-align/1d0vA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d0vA/nostruct-align/1d0vA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d0vA/nostruct-align/1d0vA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30056/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.024902 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d1dA id: 1d1dA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d1dA/nostruct-align/1d1dA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d1dA/nostruct-align/1d1dA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d1dA/nostruct-align/1d1dA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30604/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.398804 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d1gA id: 1d1gA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d1gA/nostruct-align/1d1gA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d1gA/nostruct-align/1d1gA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d1gA/nostruct-align/1d1gA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20223/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.428833 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d1qA id: 1d1qA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d1qA/nostruct-align/1d1qA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d1qA/nostruct-align/1d1qA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d1qA/nostruct-align/1d1qA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21718/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.065918 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d1rA id: 1d1rA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d1rA/nostruct-align/1d1rA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d1rA/nostruct-align/1d1rA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d1rA/nostruct-align/1d1rA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14140/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.906860 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d2fA id: 1d2fA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d2fA/nostruct-align/1d2fA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d2fA/nostruct-align/1d2fA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d2fA/nostruct-align/1d2fA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13799/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.066895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d2iA id: 1d2iA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d2iA/nostruct-align/1d2iA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d2iA/nostruct-align/1d2iA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d2iA/nostruct-align/1d2iA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10098/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.052002 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d2mA id: 1d2mA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d2mA/nostruct-align/1d2mA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d2mA/nostruct-align/1d2mA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d2mA/nostruct-align/1d2mA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32584/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.400879 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d2nA id: 1d2nA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d2nA/nostruct-align/1d2nA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d2nA/nostruct-align/1d2nA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d2nA/nostruct-align/1d2nA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16894/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.524902 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d2rB id: 1d2rB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d2rB/nostruct-align/1d2rB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d2rB/nostruct-align/1d2rB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d2rB/nostruct-align/1d2rB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19507/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.503906 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d2vA id: 1d2vA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d2vA/nostruct-align/1d2vA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d2vA/nostruct-align/1d2vA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d2vA/nostruct-align/1d2vA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25692/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.515869 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d2zA id: 1d2zA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d2zA/nostruct-align/1d2zA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d2zA/nostruct-align/1d2zA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d2zA/nostruct-align/1d2zA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10478/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.099854 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d2zB id: 1d2zB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d2zB/nostruct-align/1d2zB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d2zB/nostruct-align/1d2zB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d2zB/nostruct-align/1d2zB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3650/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.765991 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d3bA id: 1d3bA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d3bA/nostruct-align/1d3bA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d3bA/nostruct-align/1d3bA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d3bA/nostruct-align/1d3bA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24337/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.631958 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d3bB id: 1d3bB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d3bB/nostruct-align/1d3bB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d3bB/nostruct-align/1d3bB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d3bB/nostruct-align/1d3bB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20310/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.077881 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d3vA id: 1d3vA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d3vA/nostruct-align/1d3vA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d3vA/nostruct-align/1d3vA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d3vA/nostruct-align/1d3vA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18833/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.808960 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d3yA id: 1d3yA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d3yA/nostruct-align/1d3yA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d3yA/nostruct-align/1d3yA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d3yA/nostruct-align/1d3yA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14417/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.286865 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d4aA id: 1d4aA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d4aA/nostruct-align/1d4aA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d4aA/nostruct-align/1d4aA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d4aA/nostruct-align/1d4aA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22445/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.825806 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d4bA id: 1d4bA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d4bA/nostruct-align/1d4bA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d4bA/nostruct-align/1d4bA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d4bA/nostruct-align/1d4bA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29648/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.313965 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d4oA id: 1d4oA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d4oA/nostruct-align/1d4oA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d4oA/nostruct-align/1d4oA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d4oA/nostruct-align/1d4oA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14434/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.702881 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d4qA id: 1d4qA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d4qA/nostruct-align/1d4qA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d4qA/nostruct-align/1d4qA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d4qA/nostruct-align/1d4qA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26334/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.415894 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d4tA id: 1d4tA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d4tA/nostruct-align/1d4tA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d4tA/nostruct-align/1d4tA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d4tA/nostruct-align/1d4tA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3343/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.376953 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d4vA id: 1d4vA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d4vA/nostruct-align/1d4vA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d4vA/nostruct-align/1d4vA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d4vA/nostruct-align/1d4vA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20440/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.394897 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d4vB id: 1d4vB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d4vB/nostruct-align/1d4vB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d4vB/nostruct-align/1d4vB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d4vB/nostruct-align/1d4vB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24964/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.030884 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d5nA id: 1d5nA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d5nA/nostruct-align/1d5nA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d5nA/nostruct-align/1d5nA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d5nA/nostruct-align/1d5nA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14737/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.931885 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d5rA id: 1d5rA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d5rA/nostruct-align/1d5rA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d5rA/nostruct-align/1d5rA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d5rA/nostruct-align/1d5rA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9988/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.976807 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d5yA id: 1d5yA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d5yA/nostruct-align/1d5yA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d5yA/nostruct-align/1d5yA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d5yA/nostruct-align/1d5yA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12961/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.536865 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d66A id: 1d66A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d66A/nostruct-align/1d66A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d66A/nostruct-align/1d66A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d66A/nostruct-align/1d66A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9825/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.109863 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d66A_1 id: 1d66A_1 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1d66A_1/nostruct-align/1d66A_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1d66A_1/nostruct-align/1d66A_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1d66A_1/nostruct-align/1d66A_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29596/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.509888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d6aB id: 1d6aB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d6aB/nostruct-align/1d6aB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d6aB/nostruct-align/1d6aB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d6aB/nostruct-align/1d6aB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18205/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.405884 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d6gA id: 1d6gA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d6gA/nostruct-align/1d6gA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d6gA/nostruct-align/1d6gA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d6gA/nostruct-align/1d6gA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18934/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.298828 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d6jA id: 1d6jA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d6jA/nostruct-align/1d6jA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d6jA/nostruct-align/1d6jA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d6jA/nostruct-align/1d6jA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16407/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.719971 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d7mA id: 1d7mA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d7mA/nostruct-align/1d7mA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d7mA/nostruct-align/1d7mA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d7mA/nostruct-align/1d7mA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24193/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.763794 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d7oA id: 1d7oA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d7oA/nostruct-align/1d7oA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d7oA/nostruct-align/1d7oA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d7oA/nostruct-align/1d7oA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7849/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.598877 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d7qA id: 1d7qA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d7qA/nostruct-align/1d7qA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d7qA/nostruct-align/1d7qA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d7qA/nostruct-align/1d7qA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16566/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.778931 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d7uA id: 1d7uA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d7uA/nostruct-align/1d7uA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d7uA/nostruct-align/1d7uA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d7uA/nostruct-align/1d7uA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7920/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.846924 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d8bA id: 1d8bA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d8bA/nostruct-align/1d8bA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d8bA/nostruct-align/1d8bA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d8bA/nostruct-align/1d8bA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18683/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.577881 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d8cA id: 1d8cA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d8cA/nostruct-align/1d8cA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d8cA/nostruct-align/1d8cA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d8cA/nostruct-align/1d8cA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20951/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.588867 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d8dB id: 1d8dB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d8dB/nostruct-align/1d8dB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d8dB/nostruct-align/1d8dB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d8dB/nostruct-align/1d8dB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17162/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.674927 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d8iA id: 1d8iA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d8iA/nostruct-align/1d8iA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d8iA/nostruct-align/1d8iA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d8iA/nostruct-align/1d8iA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31426/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.026855 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d8jA id: 1d8jA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d8jA/nostruct-align/1d8jA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d8jA/nostruct-align/1d8jA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d8jA/nostruct-align/1d8jA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-678/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.346924 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d9bA id: 1d9bA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d9bA/nostruct-align/1d9bA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d9bA/nostruct-align/1d9bA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d9bA/nostruct-align/1d9bA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28858/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.761963 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d9cA id: 1d9cA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d9cA/nostruct-align/1d9cA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d9cA/nostruct-align/1d9cA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d9cA/nostruct-align/1d9cA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20386/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.739868 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1d9eA id: 1d9eA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d9eA/nostruct-align/1d9eA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d9eA/nostruct-align/1d9eA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d9eA/nostruct-align/1d9eA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15899/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.768799 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1daaA id: 1daaA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1daaA/nostruct-align/1daaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1daaA/nostruct-align/1daaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1daaA/nostruct-align/1daaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6315/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.328857 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dabA id: 1dabA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dabA/nostruct-align/1dabA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dabA/nostruct-align/1dabA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dabA/nostruct-align/1dabA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1167/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -22.290894 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dad id: 1dad alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dad/nostruct-align/1dad.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dad/nostruct-align/1dad.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dad/nostruct-align/1dad.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25133/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.510986 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1danH id: 1danH alignment found: /projects/compbio/experiments/models.97/pdb/1d/1danH/nostruct-align/1danH.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1danH/nostruct-align/1danH.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1danH/nostruct-align/1danH.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4203/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.630859 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1danT id: 1danT alignment found: /projects/compbio/experiments/models.97/pdb/1d/1danT/nostruct-align/1danT.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1danT/nostruct-align/1danT.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1danT/nostruct-align/1danT.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14919/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.704834 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1danU id: 1danU alignment found: /projects/compbio/experiments/models.97/pdb/1d/1danU/nostruct-align/1danU.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1danU/nostruct-align/1danU.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1danU/nostruct-align/1danU.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32605/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.118896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dapA id: 1dapA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dapA/nostruct-align/1dapA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dapA/nostruct-align/1dapA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dapA/nostruct-align/1dapA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28500/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.090942 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dar id: 1dar alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dar/nostruct-align/1dar.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dar/nostruct-align/1dar.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dar/nostruct-align/1dar.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5072/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.142822 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dat id: 1dat alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dat/nostruct-align/1dat.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dat/nostruct-align/1dat.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dat/nostruct-align/1dat.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19869/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.054810 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1db1A id: 1db1A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1db1A/nostruct-align/1db1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1db1A/nostruct-align/1db1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1db1A/nostruct-align/1db1A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13011/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -22.040894 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1db3A id: 1db3A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1db3A/nostruct-align/1db3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1db3A/nostruct-align/1db3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1db3A/nostruct-align/1db3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28295/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.137939 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dbgA id: 1dbgA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dbgA/nostruct-align/1dbgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dbgA/nostruct-align/1dbgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dbgA/nostruct-align/1dbgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7413/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.377930 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dbh id: 1dbh alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dbh/nostruct-align/1dbh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dbh/nostruct-align/1dbh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dbh/nostruct-align/1dbh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31790/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -19.623901 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dbiA id: 1dbiA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dbiA/nostruct-align/1dbiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dbiA/nostruct-align/1dbiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dbiA/nostruct-align/1dbiA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30031/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.270996 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dbs id: 1dbs alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dbs/nostruct-align/1dbs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dbs/nostruct-align/1dbs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dbs/nostruct-align/1dbs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31665/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.510986 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dbtA id: 1dbtA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dbtA/nostruct-align/1dbtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dbtA/nostruct-align/1dbtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dbtA/nostruct-align/1dbtA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30184/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.568970 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dbwA id: 1dbwA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dbwA/nostruct-align/1dbwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dbwA/nostruct-align/1dbwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dbwA/nostruct-align/1dbwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20682/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.451904 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dceA id: 1dceA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dceA/nostruct-align/1dceA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dceA/nostruct-align/1dceA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dceA/nostruct-align/1dceA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2481/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.636963 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dceB id: 1dceB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dceB/nostruct-align/1dceB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dceB/nostruct-align/1dceB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dceB/nostruct-align/1dceB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16766/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.409912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dcfA id: 1dcfA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dcfA/nostruct-align/1dcfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dcfA/nostruct-align/1dcfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dcfA/nostruct-align/1dcfA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17028/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.746948 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dchA id: 1dchA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dchA/nostruct-align/1dchA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dchA/nostruct-align/1dchA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dchA/nostruct-align/1dchA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21341/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.311890 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dciA id: 1dciA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dciA/nostruct-align/1dciA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dciA/nostruct-align/1dciA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dciA/nostruct-align/1dciA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4516/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.784912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dcpA id: 1dcpA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dcpA/nostruct-align/1dcpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dcpA/nostruct-align/1dcpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dcpA/nostruct-align/1dcpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11691/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.364990 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dcqA id: 1dcqA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dcqA/nostruct-align/1dcqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dcqA/nostruct-align/1dcqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dcqA/nostruct-align/1dcqA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23920/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.781860 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dcs id: 1dcs alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dcs/nostruct-align/1dcs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dcs/nostruct-align/1dcs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dcs/nostruct-align/1dcs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6378/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.363892 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dctA id: 1dctA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dctA/nostruct-align/1dctA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dctA/nostruct-align/1dctA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dctA/nostruct-align/1dctA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31146/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.133911 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dd5A id: 1dd5A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dd5A/nostruct-align/1dd5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dd5A/nostruct-align/1dd5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dd5A/nostruct-align/1dd5A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5408/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.265869 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dd8A id: 1dd8A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dd8A/nostruct-align/1dd8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dd8A/nostruct-align/1dd8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dd8A/nostruct-align/1dd8A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13130/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.900879 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dd9A id: 1dd9A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dd9A/nostruct-align/1dd9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dd9A/nostruct-align/1dd9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dd9A/nostruct-align/1dd9A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23202/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.073975 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ddbA id: 1ddbA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1ddbA/nostruct-align/1ddbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1ddbA/nostruct-align/1ddbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1ddbA/nostruct-align/1ddbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26031/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.340942 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ddcA id: 1ddcA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1ddcA/nostruct-align/1ddcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1ddcA/nostruct-align/1ddcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1ddcA/nostruct-align/1ddcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18439/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.357910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ddf id: 1ddf alignment found: /projects/compbio/experiments/models.97/pdb/1d/1ddf/nostruct-align/1ddf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1ddf/nostruct-align/1ddf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1ddf/nostruct-align/1ddf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9773/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.693848 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ddt id: 1ddt alignment found: /projects/compbio/experiments/models.97/pdb/1d/1ddt/nostruct-align/1ddt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1ddt/nostruct-align/1ddt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1ddt/nostruct-align/1ddt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32407/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.821899 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ddt_1 id: 1ddt_1 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1ddt_1/nostruct-align/1ddt_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1ddt_1/nostruct-align/1ddt_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1ddt_1/nostruct-align/1ddt_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21675/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.959961 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ddt_2 id: 1ddt_2 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1ddt_2/nostruct-align/1ddt_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1ddt_2/nostruct-align/1ddt_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1ddt_2/nostruct-align/1ddt_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21210/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.369873 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ddt_3 id: 1ddt_3 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1ddt_3/nostruct-align/1ddt_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1ddt_3/nostruct-align/1ddt_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1ddt_3/nostruct-align/1ddt_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3461/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.916992 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ddzA id: 1ddzA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1ddzA/nostruct-align/1ddzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1ddzA/nostruct-align/1ddzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1ddzA/nostruct-align/1ddzA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32627/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.949829 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1deaA id: 1deaA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1deaA/nostruct-align/1deaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1deaA/nostruct-align/1deaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1deaA/nostruct-align/1deaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5850/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.856812 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dec id: 1dec alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dec/nostruct-align/1dec.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dec/nostruct-align/1dec.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dec/nostruct-align/1dec.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14285/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.108887 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1def id: 1def alignment found: /projects/compbio/experiments/models.97/pdb/1d/1def/nostruct-align/1def.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1def/nostruct-align/1def.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1def/nostruct-align/1def.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6606/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.794922 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dekA id: 1dekA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dekA/nostruct-align/1dekA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dekA/nostruct-align/1dekA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dekA/nostruct-align/1dekA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30158/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.707886 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1delA id: 1delA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1delA/nostruct-align/1delA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1delA/nostruct-align/1delA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1delA/nostruct-align/1delA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-291/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.742920 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1deoA id: 1deoA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1deoA/nostruct-align/1deoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1deoA/nostruct-align/1deoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1deoA/nostruct-align/1deoA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7371/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.713867 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1derA id: 1derA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1derA/nostruct-align/1derA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1derA/nostruct-align/1derA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1derA/nostruct-align/1derA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14477/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.391846 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1devB id: 1devB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1devB/nostruct-align/1devB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1devB/nostruct-align/1devB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1devB/nostruct-align/1devB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17995/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.431885 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1devC id: 1devC alignment found: /projects/compbio/experiments/models.97/pdb/1d/1devC/nostruct-align/1devC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1devC/nostruct-align/1devC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1devC/nostruct-align/1devC.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13833/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.971924 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1df4A id: 1df4A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1df4A/nostruct-align/1df4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1df4A/nostruct-align/1df4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1df4A/nostruct-align/1df4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14840/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.153931 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1df7A id: 1df7A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1df7A/nostruct-align/1df7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1df7A/nostruct-align/1df7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1df7A/nostruct-align/1df7A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13614/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.120972 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dfd id: 1dfd alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dfd/nostruct-align/1dfd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dfd/nostruct-align/1dfd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dfd/nostruct-align/1dfd.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-29352/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.349976 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dfeA id: 1dfeA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dfeA/nostruct-align/1dfeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dfeA/nostruct-align/1dfeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dfeA/nostruct-align/1dfeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23569/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.905884 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dfmA id: 1dfmA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dfmA/nostruct-align/1dfmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dfmA/nostruct-align/1dfmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dfmA/nostruct-align/1dfmA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24697/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.052002 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dfnA id: 1dfnA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dfnA/nostruct-align/1dfnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dfnA/nostruct-align/1dfnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dfnA/nostruct-align/1dfnA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28265/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.703857 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dfsA id: 1dfsA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dfsA/nostruct-align/1dfsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dfsA/nostruct-align/1dfsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dfsA/nostruct-align/1dfsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7227/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.532959 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dfuP id: 1dfuP alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dfuP/nostruct-align/1dfuP.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dfuP/nostruct-align/1dfuP.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dfuP/nostruct-align/1dfuP.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8077/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.677856 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dfx id: 1dfx alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dfx/nostruct-align/1dfx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dfx/nostruct-align/1dfx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dfx/nostruct-align/1dfx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32331/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.659912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dg3A id: 1dg3A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dg3A/nostruct-align/1dg3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dg3A/nostruct-align/1dg3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dg3A/nostruct-align/1dg3A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4796/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.067871 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dg6A id: 1dg6A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dg6A/nostruct-align/1dg6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dg6A/nostruct-align/1dg6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dg6A/nostruct-align/1dg6A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8216/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.393921 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dg9A id: 1dg9A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dg9A/nostruct-align/1dg9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dg9A/nostruct-align/1dg9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dg9A/nostruct-align/1dg9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28826/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.690918 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dgfA id: 1dgfA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgfA/nostruct-align/1dgfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgfA/nostruct-align/1dgfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dgfA/nostruct-align/1dgfA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12373/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.912842 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dgkN id: 1dgkN alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgkN/nostruct-align/1dgkN.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgkN/nostruct-align/1dgkN.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dgkN/nostruct-align/1dgkN.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27029/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.638794 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dgrC id: 1dgrC alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgrC/nostruct-align/1dgrC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgrC/nostruct-align/1dgrC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dgrC/nostruct-align/1dgrC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3589/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.623901 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dgrM id: 1dgrM alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgrM/nostruct-align/1dgrM.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgrM/nostruct-align/1dgrM.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dgrM/nostruct-align/1dgrM.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9098/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.596924 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dgrN id: 1dgrN alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgrN/nostruct-align/1dgrN.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgrN/nostruct-align/1dgrN.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dgrN/nostruct-align/1dgrN.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27184/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.363892 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dgrV id: 1dgrV alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgrV/nostruct-align/1dgrV.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgrV/nostruct-align/1dgrV.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dgrV/nostruct-align/1dgrV.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file ./tmp/tmp-build-weighted-model-purr-4993/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.340942 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dgrW id: 1dgrW alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgrW/nostruct-align/1dgrW.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgrW/nostruct-align/1dgrW.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dgrW/nostruct-align/1dgrW.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9224/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.646851 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dguA id: 1dguA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dguA/nostruct-align/1dguA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dguA/nostruct-align/1dguA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dguA/nostruct-align/1dguA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5774/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.629883 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dgwA id: 1dgwA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgwA/nostruct-align/1dgwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgwA/nostruct-align/1dgwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dgwA/nostruct-align/1dgwA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-927/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.431885 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dgwX id: 1dgwX alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgwX/nostruct-align/1dgwX.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgwX/nostruct-align/1dgwX.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dgwX/nostruct-align/1dgwX.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9218/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.363892 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dgwY id: 1dgwY alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgwY/nostruct-align/1dgwY.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgwY/nostruct-align/1dgwY.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dgwY/nostruct-align/1dgwY.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30131/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.596924 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dgyA id: 1dgyA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgyA/nostruct-align/1dgyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgyA/nostruct-align/1dgyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dgyA/nostruct-align/1dgyA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6285/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.757935 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dhkB id: 1dhkB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dhkB/nostruct-align/1dhkB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dhkB/nostruct-align/1dhkB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dhkB/nostruct-align/1dhkB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20340/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.474854 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dhn id: 1dhn alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dhn/nostruct-align/1dhn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dhn/nostruct-align/1dhn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dhn/nostruct-align/1dhn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25875/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.712891 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dhpA id: 1dhpA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dhpA/nostruct-align/1dhpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dhpA/nostruct-align/1dhpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dhpA/nostruct-align/1dhpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29187/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.987915 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dhr id: 1dhr alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dhr/nostruct-align/1dhr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dhr/nostruct-align/1dhr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dhr/nostruct-align/1dhr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3644/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.866821 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dhs id: 1dhs alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dhs/nostruct-align/1dhs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dhs/nostruct-align/1dhs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dhs/nostruct-align/1dhs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23012/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.766968 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dhx id: 1dhx alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dhx/nostruct-align/1dhx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dhx/nostruct-align/1dhx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dhx/nostruct-align/1dhx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2758/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.705811 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dhy id: 1dhy alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dhy/nostruct-align/1dhy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dhy/nostruct-align/1dhy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dhy/nostruct-align/1dhy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23882/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.433838 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1di0A id: 1di0A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1di0A/nostruct-align/1di0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1di0A/nostruct-align/1di0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1di0A/nostruct-align/1di0A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22360/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.035889 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1di2A id: 1di2A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1di2A/nostruct-align/1di2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1di2A/nostruct-align/1di2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1di2A/nostruct-align/1di2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5821/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.222900 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1di6A id: 1di6A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1di6A/nostruct-align/1di6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1di6A/nostruct-align/1di6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1di6A/nostruct-align/1di6A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12756/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.432861 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1difA id: 1difA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1difA/nostruct-align/1difA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1difA/nostruct-align/1difA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1difA/nostruct-align/1difA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10541/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.733887 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dih id: 1dih alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dih/nostruct-align/1dih.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dih/nostruct-align/1dih.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dih/nostruct-align/1dih.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13194/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.221924 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dih_1 id: 1dih_1 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dih_1/nostruct-align/1dih_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dih_1/nostruct-align/1dih_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dih_1/nostruct-align/1dih_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31553/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.811890 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dih_2 id: 1dih_2 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dih_2/nostruct-align/1dih_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dih_2/nostruct-align/1dih_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dih_2/nostruct-align/1dih_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13952/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.134888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1diiC id: 1diiC alignment found: /projects/compbio/experiments/models.97/pdb/1d/1diiC/nostruct-align/1diiC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1diiC/nostruct-align/1diiC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1diiC/nostruct-align/1diiC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5104/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.879883 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dik id: 1dik alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dik/nostruct-align/1dik.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dik/nostruct-align/1dik.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dik/nostruct-align/1dik.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11021/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.544922 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dik_1 id: 1dik_1 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dik_1/nostruct-align/1dik_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dik_1/nostruct-align/1dik_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dik_1/nostruct-align/1dik_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13868/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.006958 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dik_2 id: 1dik_2 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dik_2/nostruct-align/1dik_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dik_2/nostruct-align/1dik_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dik_2/nostruct-align/1dik_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28373/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.575928 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dik_3 id: 1dik_3 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dik_3/nostruct-align/1dik_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dik_3/nostruct-align/1dik_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dik_3/nostruct-align/1dik_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28627/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.550903 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1din id: 1din alignment found: /projects/compbio/experiments/models.97/pdb/1d/1din/nostruct-align/1din.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1din/nostruct-align/1din.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1din/nostruct-align/1din.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-151/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.054932 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dioA id: 1dioA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dioA/nostruct-align/1dioA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dioA/nostruct-align/1dioA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dioA/nostruct-align/1dioA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8306/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.005005 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dioB id: 1dioB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dioB/nostruct-align/1dioB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dioB/nostruct-align/1dioB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dioB/nostruct-align/1dioB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3422/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.282837 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dioG id: 1dioG alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dioG/nostruct-align/1dioG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dioG/nostruct-align/1dioG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dioG/nostruct-align/1dioG.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3545/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.371948 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dipA id: 1dipA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dipA/nostruct-align/1dipA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dipA/nostruct-align/1dipA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dipA/nostruct-align/1dipA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23100/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.014893 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dipB id: 1dipB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dipB/nostruct-align/1dipB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dipB/nostruct-align/1dipB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dipB/nostruct-align/1dipB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27942/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.014893 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1div id: 1div alignment found: /projects/compbio/experiments/models.97/pdb/1d/1div/nostruct-align/1div.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1div/nostruct-align/1div.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1div/nostruct-align/1div.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23503/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.574951 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dj0A id: 1dj0A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dj0A/nostruct-align/1dj0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dj0A/nostruct-align/1dj0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dj0A/nostruct-align/1dj0A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23939/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.832886 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dj7A id: 1dj7A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dj7A/nostruct-align/1dj7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dj7A/nostruct-align/1dj7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dj7A/nostruct-align/1dj7A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26150/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.172974 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dj7B id: 1dj7B alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dj7B/nostruct-align/1dj7B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dj7B/nostruct-align/1dj7B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dj7B/nostruct-align/1dj7B.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16854/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.689819 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1djxB id: 1djxB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1djxB/nostruct-align/1djxB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1djxB/nostruct-align/1djxB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1djxB/nostruct-align/1djxB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8596/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.560913 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dkgA id: 1dkgA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dkgA/nostruct-align/1dkgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dkgA/nostruct-align/1dkgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dkgA/nostruct-align/1dkgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17755/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.976929 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dkgB id: 1dkgB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dkgB/nostruct-align/1dkgB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dkgB/nostruct-align/1dkgB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dkgB/nostruct-align/1dkgB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24867/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.925903 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dkgD id: 1dkgD alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dkgD/nostruct-align/1dkgD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dkgD/nostruct-align/1dkgD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dkgD/nostruct-align/1dkgD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8383/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.530884 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dkiA id: 1dkiA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dkiA/nostruct-align/1dkiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dkiA/nostruct-align/1dkiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dkiA/nostruct-align/1dkiA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7599/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.515869 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dkrA id: 1dkrA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dkrA/nostruct-align/1dkrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dkrA/nostruct-align/1dkrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dkrA/nostruct-align/1dkrA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5396/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.465942 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dktB id: 1dktB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dktB/nostruct-align/1dktB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dktB/nostruct-align/1dktB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dktB/nostruct-align/1dktB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2897/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.254883 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dkuA id: 1dkuA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dkuA/nostruct-align/1dkuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dkuA/nostruct-align/1dkuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dkuA/nostruct-align/1dkuA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16256/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.363892 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dkvA id: 1dkvA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dkvA/nostruct-align/1dkvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dkvA/nostruct-align/1dkvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dkvA/nostruct-align/1dkvA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22626/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.704834 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dkzA id: 1dkzA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dkzA/nostruct-align/1dkzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dkzA/nostruct-align/1dkzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dkzA/nostruct-align/1dkzA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21094/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.862915 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dl2A id: 1dl2A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dl2A/nostruct-align/1dl2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dl2A/nostruct-align/1dl2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dl2A/nostruct-align/1dl2A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20693/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.396851 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dlc id: 1dlc alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dlc/nostruct-align/1dlc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dlc/nostruct-align/1dlc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dlc/nostruct-align/1dlc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30152/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.791870 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dlc_1 id: 1dlc_1 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dlc_1/nostruct-align/1dlc_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dlc_1/nostruct-align/1dlc_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dlc_1/nostruct-align/1dlc_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16910/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.195923 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dlc_2 id: 1dlc_2 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dlc_2/nostruct-align/1dlc_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dlc_2/nostruct-align/1dlc_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dlc_2/nostruct-align/1dlc_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2587/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.514893 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dlc_3 id: 1dlc_3 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dlc_3/nostruct-align/1dlc_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dlc_3/nostruct-align/1dlc_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dlc_3/nostruct-align/1dlc_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30357/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.519897 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dlfH id: 1dlfH alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dlfH/nostruct-align/1dlfH.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dlfH/nostruct-align/1dlfH.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dlfH/nostruct-align/1dlfH.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3528/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.176880 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dlfL id: 1dlfL alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dlfL/nostruct-align/1dlfL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dlfL/nostruct-align/1dlfL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dlfL/nostruct-align/1dlfL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21064/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.646851 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dlhA_1 id: 1dlhA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dlhA_1/nostruct-align/1dlhA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dlhA_1/nostruct-align/1dlhA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dlhA_1/nostruct-align/1dlhA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19071/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.681885 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dlhB id: 1dlhB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dlhB/nostruct-align/1dlhB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dlhB/nostruct-align/1dlhB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dlhB/nostruct-align/1dlhB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32313/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.956909 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dliA id: 1dliA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dliA/nostruct-align/1dliA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dliA/nostruct-align/1dliA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dliA/nostruct-align/1dliA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32762/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.517822 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dlxA id: 1dlxA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dlxA/nostruct-align/1dlxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dlxA/nostruct-align/1dlxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dlxA/nostruct-align/1dlxA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20531/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.998901 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dm0A id: 1dm0A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dm0A/nostruct-align/1dm0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dm0A/nostruct-align/1dm0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dm0A/nostruct-align/1dm0A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26397/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.871826 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dm9A id: 1dm9A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dm9A/nostruct-align/1dm9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dm9A/nostruct-align/1dm9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dm9A/nostruct-align/1dm9A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26716/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.000854 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dmaA id: 1dmaA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dmaA/nostruct-align/1dmaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dmaA/nostruct-align/1dmaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dmaA/nostruct-align/1dmaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13945/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.474854 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dmc id: 1dmc alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dmc/nostruct-align/1dmc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dmc/nostruct-align/1dmc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dmc/nostruct-align/1dmc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32496/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.583862 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dme id: 1dme alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dme/nostruct-align/1dme.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dme/nostruct-align/1dme.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dme/nostruct-align/1dme.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17079/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.716919 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dmhA id: 1dmhA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dmhA/nostruct-align/1dmhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dmhA/nostruct-align/1dmhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dmhA/nostruct-align/1dmhA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18295/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.591919 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dmlA id: 1dmlA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dmlA/nostruct-align/1dmlA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dmlA/nostruct-align/1dmlA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dmlA/nostruct-align/1dmlA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12130/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.689941 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dmlB id: 1dmlB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dmlB/nostruct-align/1dmlB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dmlB/nostruct-align/1dmlB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dmlB/nostruct-align/1dmlB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8270/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.780884 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dmr id: 1dmr alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dmr/nostruct-align/1dmr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dmr/nostruct-align/1dmr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dmr/nostruct-align/1dmr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6225/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.709839 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dmuA id: 1dmuA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dmuA/nostruct-align/1dmuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dmuA/nostruct-align/1dmuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dmuA/nostruct-align/1dmuA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29066/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.253906 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dmwA id: 1dmwA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dmwA/nostruct-align/1dmwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dmwA/nostruct-align/1dmwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dmwA/nostruct-align/1dmwA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18939/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.612915 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dn1A id: 1dn1A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dn1A/nostruct-align/1dn1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dn1A/nostruct-align/1dn1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dn1A/nostruct-align/1dn1A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19438/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.729858 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dn1B id: 1dn1B alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dn1B/nostruct-align/1dn1B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dn1B/nostruct-align/1dn1B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dn1B/nostruct-align/1dn1B.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29566/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.267822 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dnv id: 1dnv alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dnv/nostruct-align/1dnv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dnv/nostruct-align/1dnv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dnv/nostruct-align/1dnv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20658/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.958984 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dnyA id: 1dnyA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dnyA/nostruct-align/1dnyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dnyA/nostruct-align/1dnyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dnyA/nostruct-align/1dnyA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22835/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.747925 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1do0A id: 1do0A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1do0A/nostruct-align/1do0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1do0A/nostruct-align/1do0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1do0A/nostruct-align/1do0A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17502/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.976807 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1do6A id: 1do6A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1do6A/nostruct-align/1do6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1do6A/nostruct-align/1do6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1do6A/nostruct-align/1do6A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15626/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.572876 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1doi id: 1doi alignment found: /projects/compbio/experiments/models.97/pdb/1d/1doi/nostruct-align/1doi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1doi/nostruct-align/1doi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1doi/nostruct-align/1doi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2816/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.014893 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dokA id: 1dokA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dokA/nostruct-align/1dokA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dokA/nostruct-align/1dokA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dokA/nostruct-align/1dokA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27750/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.021851 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dosA id: 1dosA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dosA/nostruct-align/1dosA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dosA/nostruct-align/1dosA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dosA/nostruct-align/1dosA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9823/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.104980 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dozA id: 1dozA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dozA/nostruct-align/1dozA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dozA/nostruct-align/1dozA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dozA/nostruct-align/1dozA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30594/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.104980 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dp5B id: 1dp5B alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dp5B/nostruct-align/1dp5B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dp5B/nostruct-align/1dp5B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dp5B/nostruct-align/1dp5B.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6741/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.881958 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dp7P id: 1dp7P alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dp7P/nostruct-align/1dp7P.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dp7P/nostruct-align/1dp7P.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dp7P/nostruct-align/1dp7P.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3168/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.553833 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dpe id: 1dpe alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dpe/nostruct-align/1dpe.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dpe/nostruct-align/1dpe.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dpe/nostruct-align/1dpe.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6849/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.451904 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dpgA id: 1dpgA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dpgA/nostruct-align/1dpgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dpgA/nostruct-align/1dpgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dpgA/nostruct-align/1dpgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4398/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.607788 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dpgA_1 id: 1dpgA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dpgA_1/nostruct-align/1dpgA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dpgA_1/nostruct-align/1dpgA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dpgA_1/nostruct-align/1dpgA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6848/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.161987 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dpgA_2 id: 1dpgA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dpgA_2/nostruct-align/1dpgA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dpgA_2/nostruct-align/1dpgA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dpgA_2/nostruct-align/1dpgA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13146/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.553955 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dpo id: 1dpo alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dpo/nostruct-align/1dpo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dpo/nostruct-align/1dpo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dpo/nostruct-align/1dpo.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1716/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.649902 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dppA id: 1dppA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dppA/nostruct-align/1dppA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dppA/nostruct-align/1dppA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dppA/nostruct-align/1dppA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18299/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.467896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dprA_1 id: 1dprA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dprA_1/nostruct-align/1dprA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dprA_1/nostruct-align/1dprA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dprA_1/nostruct-align/1dprA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14428/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.984863 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dpr_1a1 id: 1dpr_1a1 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dpr_1a1/nostruct-align/1dpr_1a1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dpr_1a1/nostruct-align/1dpr_1a1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dpr_1a1/nostruct-align/1dpr_1a1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29712/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.786865 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dpsA id: 1dpsA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dpsA/nostruct-align/1dpsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dpsA/nostruct-align/1dpsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dpsA/nostruct-align/1dpsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25291/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.328003 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dpsD id: 1dpsD alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dpsD/nostruct-align/1dpsD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dpsD/nostruct-align/1dpsD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dpsD/nostruct-align/1dpsD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4161/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.676880 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dptA id: 1dptA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dptA/nostruct-align/1dptA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dptA/nostruct-align/1dptA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dptA/nostruct-align/1dptA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12175/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.542969 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dqaA id: 1dqaA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dqaA/nostruct-align/1dqaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dqaA/nostruct-align/1dqaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dqaA/nostruct-align/1dqaA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27997/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.675781 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dqbA id: 1dqbA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dqbA/nostruct-align/1dqbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dqbA/nostruct-align/1dqbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dqbA/nostruct-align/1dqbA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29283/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.975952 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dqgA id: 1dqgA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dqgA/nostruct-align/1dqgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dqgA/nostruct-align/1dqgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dqgA/nostruct-align/1dqgA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3641/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.408936 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dqrA id: 1dqrA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dqrA/nostruct-align/1dqrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dqrA/nostruct-align/1dqrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dqrA/nostruct-align/1dqrA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29334/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.022827 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dqsA id: 1dqsA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dqsA/nostruct-align/1dqsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dqsA/nostruct-align/1dqsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dqsA/nostruct-align/1dqsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10767/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.136841 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dquA id: 1dquA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dquA/nostruct-align/1dquA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dquA/nostruct-align/1dquA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dquA/nostruct-align/1dquA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5178/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.530884 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dqwA id: 1dqwA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dqwA/nostruct-align/1dqwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dqwA/nostruct-align/1dqwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dqwA/nostruct-align/1dqwA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12367/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.932861 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dr8B id: 1dr8B alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dr8B/nostruct-align/1dr8B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dr8B/nostruct-align/1dr8B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dr8B/nostruct-align/1dr8B.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5863/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.757935 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1draA id: 1draA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1draA/nostruct-align/1draA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1draA/nostruct-align/1draA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1draA/nostruct-align/1draA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20136/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.223999 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1drmA id: 1drmA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1drmA/nostruct-align/1drmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1drmA/nostruct-align/1drmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1drmA/nostruct-align/1drmA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7374/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.988892 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1drqA id: 1drqA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1drqA/nostruct-align/1drqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1drqA/nostruct-align/1drqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1drqA/nostruct-align/1drqA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13314/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.820923 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1drw id: 1drw alignment found: /projects/compbio/experiments/models.97/pdb/1d/1drw/nostruct-align/1drw.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1drw/nostruct-align/1drw.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1drw/nostruct-align/1drw.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8323/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.520996 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dsbA id: 1dsbA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dsbA/nostruct-align/1dsbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dsbA/nostruct-align/1dsbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dsbA/nostruct-align/1dsbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26379/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.397949 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dsbA_1 id: 1dsbA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dsbA_1/nostruct-align/1dsbA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dsbA_1/nostruct-align/1dsbA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dsbA_1/nostruct-align/1dsbA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32085/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.413818 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dsbA_2 id: 1dsbA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dsbA_2/nostruct-align/1dsbA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dsbA_2/nostruct-align/1dsbA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dsbA_2/nostruct-align/1dsbA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2611/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.383911 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dssG id: 1dssG alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dssG/nostruct-align/1dssG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dssG/nostruct-align/1dssG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dssG/nostruct-align/1dssG.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20153/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.637939 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dsvA id: 1dsvA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dsvA/nostruct-align/1dsvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dsvA/nostruct-align/1dsvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dsvA/nostruct-align/1dsvA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5027/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.404785 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dt4A id: 1dt4A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dt4A/nostruct-align/1dt4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dt4A/nostruct-align/1dt4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dt4A/nostruct-align/1dt4A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14922/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.266846 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dt8A id: 1dt8A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dt8A/nostruct-align/1dt8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dt8A/nostruct-align/1dt8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dt8A/nostruct-align/1dt8A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2994/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.096924 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dt9A id: 1dt9A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dt9A/nostruct-align/1dt9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dt9A/nostruct-align/1dt9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dt9A/nostruct-align/1dt9A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32361/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.787842 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dtgA id: 1dtgA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dtgA/nostruct-align/1dtgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dtgA/nostruct-align/1dtgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dtgA/nostruct-align/1dtgA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-833/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.428955 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dtoA id: 1dtoA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dtoA/nostruct-align/1dtoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dtoA/nostruct-align/1dtoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dtoA/nostruct-align/1dtoA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13562/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.524902 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dts id: 1dts alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dts/nostruct-align/1dts.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dts/nostruct-align/1dts.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dts/nostruct-align/1dts.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21739/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.345825 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dttA id: 1dttA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dttA/nostruct-align/1dttA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dttA/nostruct-align/1dttA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dttA/nostruct-align/1dttA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25638/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.894897 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dtx id: 1dtx alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dtx/nostruct-align/1dtx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dtx/nostruct-align/1dtx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dtx/nostruct-align/1dtx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21184/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.813965 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dtyA id: 1dtyA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dtyA/nostruct-align/1dtyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dtyA/nostruct-align/1dtyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dtyA/nostruct-align/1dtyA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.756958 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1du2A id: 1du2A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1du2A/nostruct-align/1du2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1du2A/nostruct-align/1du2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1du2A/nostruct-align/1du2A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3416/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.756836 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dugA id: 1dugA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dugA/nostruct-align/1dugA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dugA/nostruct-align/1dugA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dugA/nostruct-align/1dugA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10386/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.875854 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dujA id: 1dujA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dujA/nostruct-align/1dujA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dujA/nostruct-align/1dujA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dujA/nostruct-align/1dujA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3911/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.040894 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dulA id: 1dulA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dulA/nostruct-align/1dulA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dulA/nostruct-align/1dulA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dulA/nostruct-align/1dulA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18697/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.150879 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dun id: 1dun alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dun/nostruct-align/1dun.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dun/nostruct-align/1dun.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dun/nostruct-align/1dun.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32370/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.111938 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dupA id: 1dupA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dupA/nostruct-align/1dupA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dupA/nostruct-align/1dupA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dupA/nostruct-align/1dupA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31315/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.916870 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1duzA id: 1duzA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1duzA/nostruct-align/1duzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1duzA/nostruct-align/1duzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1duzA/nostruct-align/1duzA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6018/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.743896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1duzB id: 1duzB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1duzB/nostruct-align/1duzB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1duzB/nostruct-align/1duzB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1duzB/nostruct-align/1duzB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16310/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.538940 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dv0A id: 1dv0A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dv0A/nostruct-align/1dv0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dv0A/nostruct-align/1dv0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dv0A/nostruct-align/1dv0A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1564/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.748901 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dvh id: 1dvh alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dvh/nostruct-align/1dvh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dvh/nostruct-align/1dvh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dvh/nostruct-align/1dvh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17182/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.448853 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dvjA id: 1dvjA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dvjA/nostruct-align/1dvjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dvjA/nostruct-align/1dvjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dvjA/nostruct-align/1dvjA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30534/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.523926 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dvkA id: 1dvkA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dvkA/nostruct-align/1dvkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dvkA/nostruct-align/1dvkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dvkA/nostruct-align/1dvkA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19900/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.573853 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dvpA id: 1dvpA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dvpA/nostruct-align/1dvpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dvpA/nostruct-align/1dvpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dvpA/nostruct-align/1dvpA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6970/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.824951 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dw9A id: 1dw9A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dw9A/nostruct-align/1dw9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dw9A/nostruct-align/1dw9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dw9A/nostruct-align/1dw9A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18535/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.706909 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dwnA id: 1dwnA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dwnA/nostruct-align/1dwnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dwnA/nostruct-align/1dwnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dwnA/nostruct-align/1dwnA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3571/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.005859 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dwtA id: 1dwtA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dwtA/nostruct-align/1dwtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dwtA/nostruct-align/1dwtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dwtA/nostruct-align/1dwtA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9383/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.224854 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dx5I id: 1dx5I alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dx5I/nostruct-align/1dx5I.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dx5I/nostruct-align/1dx5I.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dx5I/nostruct-align/1dx5I.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3638/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.321899 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dx7A id: 1dx7A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dx7A/nostruct-align/1dx7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dx7A/nostruct-align/1dx7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dx7A/nostruct-align/1dx7A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6023/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.097900 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dxgA id: 1dxgA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dxgA/nostruct-align/1dxgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dxgA/nostruct-align/1dxgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dxgA/nostruct-align/1dxgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20488/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.310791 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dxtB id: 1dxtB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dxtB/nostruct-align/1dxtB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dxtB/nostruct-align/1dxtB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dxtB/nostruct-align/1dxtB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4649/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.387939 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dxy id: 1dxy alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dxy/nostruct-align/1dxy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dxy/nostruct-align/1dxy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dxy/nostruct-align/1dxy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13636/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.183838 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dxzA id: 1dxzA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dxzA/nostruct-align/1dxzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dxzA/nostruct-align/1dxzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dxzA/nostruct-align/1dxzA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3643/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.844849 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dy5A id: 1dy5A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dy5A/nostruct-align/1dy5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dy5A/nostruct-align/1dy5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dy5A/nostruct-align/1dy5A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3403/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.037842 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dynA id: 1dynA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dynA/nostruct-align/1dynA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dynA/nostruct-align/1dynA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dynA/nostruct-align/1dynA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8602/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.113892 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dyr id: 1dyr alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dyr/nostruct-align/1dyr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dyr/nostruct-align/1dyr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dyr/nostruct-align/1dyr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32226/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.345825 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dz1A id: 1dz1A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dz1A/nostruct-align/1dz1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dz1A/nostruct-align/1dz1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dz1A/nostruct-align/1dz1A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22611/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.878906 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dz3A id: 1dz3A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dz3A/nostruct-align/1dz3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dz3A/nostruct-align/1dz3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dz3A/nostruct-align/1dz3A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7227/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.299927 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dzlA id: 1dzlA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dzlA/nostruct-align/1dzlA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dzlA/nostruct-align/1dzlA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dzlA/nostruct-align/1dzlA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21221/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.565918 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1dzrA id: 1dzrA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dzrA/nostruct-align/1dzrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dzrA/nostruct-align/1dzrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dzrA/nostruct-align/1dzrA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20420/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.065918 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1e0aB id: 1e0aB alignment found: /projects/compbio/experiments/models.97/pdb/1e/1e0aB/nostruct-align/1e0aB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1e0aB/nostruct-align/1e0aB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1e0aB/nostruct-align/1e0aB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1361/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.510864 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1e0bA id: 1e0bA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1e0bA/nostruct-align/1e0bA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1e0bA/nostruct-align/1e0bA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1e0bA/nostruct-align/1e0bA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19278/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.800903 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1e0cA id: 1e0cA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1e0cA/nostruct-align/1e0cA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1e0cA/nostruct-align/1e0cA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1e0cA/nostruct-align/1e0cA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25124/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.659912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1e0lA id: 1e0lA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1e0lA/nostruct-align/1e0lA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1e0lA/nostruct-align/1e0lA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1e0lA/nostruct-align/1e0lA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18044/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.677002 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1e1bA id: 1e1bA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1e1bA/nostruct-align/1e1bA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1e1bA/nostruct-align/1e1bA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1e1bA/nostruct-align/1e1bA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15627/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.162842 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1e2aA id: 1e2aA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1e2aA/nostruct-align/1e2aA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1e2aA/nostruct-align/1e2aA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1e2aA/nostruct-align/1e2aA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29239/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.487915 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1e2o id: 1e2o alignment found: /projects/compbio/experiments/models.97/pdb/1e/1e2o/nostruct-align/1e2o.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1e2o/nostruct-align/1e2o.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1e2o/nostruct-align/1e2o.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14567/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.820923 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1eaf id: 1eaf alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eaf/nostruct-align/1eaf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eaf/nostruct-align/1eaf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eaf/nostruct-align/1eaf.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28150/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.578857 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1eagA id: 1eagA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eagA/nostruct-align/1eagA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eagA/nostruct-align/1eagA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eagA/nostruct-align/1eagA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17142/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.730957 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1eaiC id: 1eaiC alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eaiC/nostruct-align/1eaiC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eaiC/nostruct-align/1eaiC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eaiC/nostruct-align/1eaiC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27206/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.608887 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1eal id: 1eal alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eal/nostruct-align/1eal.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eal/nostruct-align/1eal.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eal/nostruct-align/1eal.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23015/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.005981 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1eayC id: 1eayC alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eayC/nostruct-align/1eayC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eayC/nostruct-align/1eayC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eayC/nostruct-align/1eayC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5412/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.719849 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ebdC id: 1ebdC alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ebdC/nostruct-align/1ebdC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ebdC/nostruct-align/1ebdC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ebdC/nostruct-align/1ebdC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19367/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.081909 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ebhA_1 id: 1ebhA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1e/1ebhA_1/nostruct-align/1ebhA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1ebhA_1/nostruct-align/1ebhA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1e/1ebhA_1/nostruct-align/1ebhA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1506/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -268.957886 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ebhA_2 id: 1ebhA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1e/1ebhA_2/nostruct-align/1ebhA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1ebhA_2/nostruct-align/1ebhA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1e/1ebhA_2/nostruct-align/1ebhA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23359/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -137.040894 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1eblA id: 1eblA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eblA/nostruct-align/1eblA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eblA/nostruct-align/1eblA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eblA/nostruct-align/1eblA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16462/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.305908 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ebmA id: 1ebmA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ebmA/nostruct-align/1ebmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ebmA/nostruct-align/1ebmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ebmA/nostruct-align/1ebmA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27874/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.183838 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ebpA id: 1ebpA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ebpA/nostruct-align/1ebpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ebpA/nostruct-align/1ebpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ebpA/nostruct-align/1ebpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12763/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -23.531860 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ebuA id: 1ebuA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ebuA/nostruct-align/1ebuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ebuA/nostruct-align/1ebuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ebuA/nostruct-align/1ebuA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8057/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.485840 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1eca id: 1eca alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eca/nostruct-align/1eca.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eca/nostruct-align/1eca.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eca/nostruct-align/1eca.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23933/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.814819 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ecd id: 1ecd alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ecd/nostruct-align/1ecd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ecd/nostruct-align/1ecd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ecd/nostruct-align/1ecd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20542/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.829956 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1eceA id: 1eceA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eceA/nostruct-align/1eceA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eceA/nostruct-align/1eceA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eceA/nostruct-align/1eceA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9969/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.565918 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ecfA id: 1ecfA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ecfA/nostruct-align/1ecfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ecfA/nostruct-align/1ecfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ecfA/nostruct-align/1ecfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31454/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.007813 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ecfB id: 1ecfB alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ecfB/nostruct-align/1ecfB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ecfB/nostruct-align/1ecfB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ecfB/nostruct-align/1ecfB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5047/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.675903 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1eciA id: 1eciA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eciA/nostruct-align/1eciA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eciA/nostruct-align/1eciA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eciA/nostruct-align/1eciA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4438/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.328857 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ecl id: 1ecl alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ecl/nostruct-align/1ecl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ecl/nostruct-align/1ecl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ecl/nostruct-align/1ecl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15537/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.674805 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ecmA id: 1ecmA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ecmA/nostruct-align/1ecmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ecmA/nostruct-align/1ecmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ecmA/nostruct-align/1ecmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24209/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.955811 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1eco id: 1eco alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eco/nostruct-align/1eco.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eco/nostruct-align/1eco.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eco/nostruct-align/1eco.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7670/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.787964 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ecpA id: 1ecpA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ecpA/nostruct-align/1ecpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ecpA/nostruct-align/1ecpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ecpA/nostruct-align/1ecpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29599/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.723999 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ecrA id: 1ecrA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ecrA/nostruct-align/1ecrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ecrA/nostruct-align/1ecrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ecrA/nostruct-align/1ecrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28452/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.345947 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ecxA id: 1ecxA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ecxA/nostruct-align/1ecxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ecxA/nostruct-align/1ecxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ecxA/nostruct-align/1ecxA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2676/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.303955 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ed7A id: 1ed7A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ed7A/nostruct-align/1ed7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ed7A/nostruct-align/1ed7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ed7A/nostruct-align/1ed7A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8322/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.377930 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ede id: 1ede alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ede/nostruct-align/1ede.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ede/nostruct-align/1ede.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ede/nostruct-align/1ede.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28414/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.004883 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1edg id: 1edg alignment found: /projects/compbio/experiments/models.97/pdb/1e/1edg/nostruct-align/1edg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1edg/nostruct-align/1edg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1edg/nostruct-align/1edg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23454/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.421875 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1edhA id: 1edhA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1edhA/nostruct-align/1edhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1edhA/nostruct-align/1edhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1edhA/nostruct-align/1edhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9346/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.433838 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1edmB id: 1edmB alignment found: /projects/compbio/experiments/models.97/pdb/1e/1edmB/nostruct-align/1edmB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1edmB/nostruct-align/1edmB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1edmB/nostruct-align/1edmB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25029/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.859863 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1edqA id: 1edqA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1edqA/nostruct-align/1edqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1edqA/nostruct-align/1edqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1edqA/nostruct-align/1edqA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26159/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.736938 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1edt id: 1edt alignment found: /projects/compbio/experiments/models.97/pdb/1e/1edt/nostruct-align/1edt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1edt/nostruct-align/1edt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1edt/nostruct-align/1edt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12210/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.514893 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1eduA id: 1eduA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eduA/nostruct-align/1eduA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eduA/nostruct-align/1eduA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eduA/nostruct-align/1eduA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7849/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.079834 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ee4A id: 1ee4A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ee4A/nostruct-align/1ee4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ee4A/nostruct-align/1ee4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ee4A/nostruct-align/1ee4A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25739/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.544922 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1eerA id: 1eerA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eerA/nostruct-align/1eerA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eerA/nostruct-align/1eerA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eerA/nostruct-align/1eerA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17281/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.240845 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1eerB id: 1eerB alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eerB/nostruct-align/1eerB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eerB/nostruct-align/1eerB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eerB/nostruct-align/1eerB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19401/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.973877 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1eesB id: 1eesB alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eesB/nostruct-align/1eesB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eesB/nostruct-align/1eesB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eesB/nostruct-align/1eesB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29806/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.277832 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ef1A id: 1ef1A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ef1A/nostruct-align/1ef1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ef1A/nostruct-align/1ef1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ef1A/nostruct-align/1ef1A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10669/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.091919 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ef1C id: 1ef1C alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ef1C/nostruct-align/1ef1C.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ef1C/nostruct-align/1ef1C.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ef1C/nostruct-align/1ef1C.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11614/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.147949 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ef8A id: 1ef8A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ef8A/nostruct-align/1ef8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ef8A/nostruct-align/1ef8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ef8A/nostruct-align/1ef8A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2290/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.306885 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1efcA id: 1efcA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1efcA/nostruct-align/1efcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1efcA/nostruct-align/1efcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1efcA/nostruct-align/1efcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18868/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.293823 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1efdN id: 1efdN alignment found: /projects/compbio/experiments/models.97/pdb/1e/1efdN/nostruct-align/1efdN.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1efdN/nostruct-align/1efdN.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1efdN/nostruct-align/1efdN.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16362/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.458862 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1efgA_1 id: 1efgA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1e/1efgA_1/nostruct-align/1efgA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1efgA_1/nostruct-align/1efgA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1e/1efgA_1/nostruct-align/1efgA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19965/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.216919 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1efgA_2 id: 1efgA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1e/1efgA_2/nostruct-align/1efgA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1efgA_2/nostruct-align/1efgA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1e/1efgA_2/nostruct-align/1efgA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1832/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.759888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1efgA_3 id: 1efgA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1e/1efgA_3/nostruct-align/1efgA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1efgA_3/nostruct-align/1efgA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1e/1efgA_3/nostruct-align/1efgA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20995/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.597900 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1efgA_4 id: 1efgA_4 alignment found: /projects/compbio4/experiments/models.97/domains/1e/1efgA_4/nostruct-align/1efgA_4.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1efgA_4/nostruct-align/1efgA_4.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1e/1efgA_4/nostruct-align/1efgA_4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29344/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.159912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1efiD id: 1efiD alignment found: /projects/compbio/experiments/models.97/pdb/1e/1efiD/nostruct-align/1efiD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1efiD/nostruct-align/1efiD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1efiD/nostruct-align/1efiD.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5129/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.451904 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1efm id: 1efm alignment found: /projects/compbio/experiments/models.97/pdb/1e/1efm/nostruct-align/1efm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1efm/nostruct-align/1efm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1efm/nostruct-align/1efm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12101/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.518921 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1efnB id: 1efnB alignment found: /projects/compbio/experiments/models.97/pdb/1e/1efnB/nostruct-align/1efnB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1efnB/nostruct-align/1efnB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1efnB/nostruct-align/1efnB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32213/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.361938 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1eft_1 id: 1eft_1 alignment found: /projects/compbio4/experiments/models.97/domains/1e/1eft_1/nostruct-align/1eft_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1eft_1/nostruct-align/1eft_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1e/1eft_1/nostruct-align/1eft_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12169/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.120972 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1eft_2 id: 1eft_2 alignment found: /projects/compbio4/experiments/models.97/domains/1e/1eft_2/nostruct-align/1eft_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1eft_2/nostruct-align/1eft_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1e/1eft_2/nostruct-align/1eft_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13466/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.791992 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1eft_3 id: 1eft_3 alignment found: /projects/compbio4/experiments/models.97/domains/1e/1eft_3/nostruct-align/1eft_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1eft_3/nostruct-align/1eft_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1e/1eft_3/nostruct-align/1eft_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26369/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.575806 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1efuB id: 1efuB alignment found: /projects/compbio/experiments/models.97/pdb/1e/1efuB/nostruct-align/1efuB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1efuB/nostruct-align/1efuB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1efuB/nostruct-align/1efuB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25745/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.874878 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1efvA id: 1efvA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1efvA/nostruct-align/1efvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1efvA/nostruct-align/1efvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1efvA/nostruct-align/1efvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22045/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.743896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1efvB id: 1efvB alignment found: /projects/compbio/experiments/models.97/pdb/1e/1efvB/nostruct-align/1efvB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1efvB/nostruct-align/1efvB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1efvB/nostruct-align/1efvB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27971/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.684937 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1egaA id: 1egaA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1egaA/nostruct-align/1egaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1egaA/nostruct-align/1egaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1egaA/nostruct-align/1egaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7634/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.616821 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1egf id: 1egf alignment found: /projects/compbio/experiments/models.97/pdb/1e/1egf/nostruct-align/1egf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1egf/nostruct-align/1egf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1egf/nostruct-align/1egf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6420/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.257935 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ego id: 1ego alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ego/nostruct-align/1ego.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ego/nostruct-align/1ego.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ego/nostruct-align/1ego.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4294/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.753906 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1egpA id: 1egpA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1egpA/nostruct-align/1egpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1egpA/nostruct-align/1egpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1egpA/nostruct-align/1egpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25229/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.628906 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1egpB id: 1egpB alignment found: /projects/compbio/experiments/models.97/pdb/1e/1egpB/nostruct-align/1egpB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1egpB/nostruct-align/1egpB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1egpB/nostruct-align/1egpB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31618/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.841797 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1egr id: 1egr alignment found: /projects/compbio/experiments/models.97/pdb/1e/1egr/nostruct-align/1egr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1egr/nostruct-align/1egr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1egr/nostruct-align/1egr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3022/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.723877 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1eh2 id: 1eh2 alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eh2/nostruct-align/1eh2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eh2/nostruct-align/1eh2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eh2/nostruct-align/1eh2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24118/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.917847 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ehs id: 1ehs alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ehs/nostruct-align/1ehs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ehs/nostruct-align/1ehs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ehs/nostruct-align/1ehs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4129/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.968872 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ehyA id: 1ehyA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ehyA/nostruct-align/1ehyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ehyA/nostruct-align/1ehyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ehyA/nostruct-align/1ehyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16631/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.173950 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ei9A id: 1ei9A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ei9A/nostruct-align/1ei9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ei9A/nostruct-align/1ei9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ei9A/nostruct-align/1ei9A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26054/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.472900 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1eia id: 1eia alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eia/nostruct-align/1eia.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eia/nostruct-align/1eia.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eia/nostruct-align/1eia.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20261/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.035889 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1eit id: 1eit alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eit/nostruct-align/1eit.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eit/nostruct-align/1eit.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eit/nostruct-align/1eit.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1651/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.695801 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1eiyB id: 1eiyB alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eiyB/nostruct-align/1eiyB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eiyB/nostruct-align/1eiyB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eiyB/nostruct-align/1eiyB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16289/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.784912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ej3A id: 1ej3A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ej3A/nostruct-align/1ej3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ej3A/nostruct-align/1ej3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ej3A/nostruct-align/1ej3A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-627/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.997925 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ej5A id: 1ej5A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ej5A/nostruct-align/1ej5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ej5A/nostruct-align/1ej5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ej5A/nostruct-align/1ej5A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25553/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.802002 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ej8A id: 1ej8A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ej8A/nostruct-align/1ej8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ej8A/nostruct-align/1ej8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ej8A/nostruct-align/1ej8A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29021/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.813843 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ejgA id: 1ejgA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ejgA/nostruct-align/1ejgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ejgA/nostruct-align/1ejgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ejgA/nostruct-align/1ejgA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30307/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.138794 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ejhA id: 1ejhA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ejhA/nostruct-align/1ejhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ejhA/nostruct-align/1ejhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ejhA/nostruct-align/1ejhA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30358/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.097900 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ejkA id: 1ejkA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ejkA/nostruct-align/1ejkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ejkA/nostruct-align/1ejkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ejkA/nostruct-align/1ejkA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32581/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.222900 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ek0A id: 1ek0A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ek0A/nostruct-align/1ek0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ek0A/nostruct-align/1ek0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ek0A/nostruct-align/1ek0A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25562/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.022827 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ekcC id: 1ekcC alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ekcC/nostruct-align/1ekcC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ekcC/nostruct-align/1ekcC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ekcC/nostruct-align/1ekcC.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19677/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.811890 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ekjB id: 1ekjB alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ekjB/nostruct-align/1ekjB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ekjB/nostruct-align/1ekjB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ekjB/nostruct-align/1ekjB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23605/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.549805 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1el6B id: 1el6B alignment found: /projects/compbio/experiments/models.97/pdb/1e/1el6B/nostruct-align/1el6B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1el6B/nostruct-align/1el6B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1el6B/nostruct-align/1el6B.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32418/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.675903 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1elkA id: 1elkA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1elkA/nostruct-align/1elkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1elkA/nostruct-align/1elkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1elkA/nostruct-align/1elkA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19784/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.405884 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1elqA id: 1elqA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1elqA/nostruct-align/1elqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1elqA/nostruct-align/1elqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1elqA/nostruct-align/1elqA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3175/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.019897 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1elrA id: 1elrA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1elrA/nostruct-align/1elrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1elrA/nostruct-align/1elrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1elrA/nostruct-align/1elrA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8313/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.193848 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1elwA id: 1elwA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1elwA/nostruct-align/1elwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1elwA/nostruct-align/1elwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1elwA/nostruct-align/1elwA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29380/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.346924 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1elyA id: 1elyA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1elyA/nostruct-align/1elyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1elyA/nostruct-align/1elyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1elyA/nostruct-align/1elyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9400/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.113892 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1em2A id: 1em2A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1em2A/nostruct-align/1em2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1em2A/nostruct-align/1em2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1em2A/nostruct-align/1em2A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13684/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.056885 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ema id: 1ema alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ema/nostruct-align/1ema.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ema/nostruct-align/1ema.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ema/nostruct-align/1ema.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15141/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.659912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1emn id: 1emn alignment found: /projects/compbio/experiments/models.97/pdb/1e/1emn/nostruct-align/1emn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1emn/nostruct-align/1emn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1emn/nostruct-align/1emn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26795/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.427856 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1en7A id: 1en7A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1en7A/nostruct-align/1en7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1en7A/nostruct-align/1en7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1en7A/nostruct-align/1en7A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11833/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.778931 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1enfA id: 1enfA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1enfA/nostruct-align/1enfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1enfA/nostruct-align/1enfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1enfA/nostruct-align/1enfA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3401/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.687866 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1enh id: 1enh alignment found: /projects/compbio/experiments/models.97/pdb/1e/1enh/nostruct-align/1enh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1enh/nostruct-align/1enh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1enh/nostruct-align/1enh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18241/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.138916 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1enp id: 1enp alignment found: /projects/compbio/experiments/models.97/pdb/1e/1enp/nostruct-align/1enp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1enp/nostruct-align/1enp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1enp/nostruct-align/1enp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13239/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.427002 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1envA id: 1envA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1envA/nostruct-align/1envA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1envA/nostruct-align/1envA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1envA/nostruct-align/1envA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29486/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.802856 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1enwA id: 1enwA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1enwA/nostruct-align/1enwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1enwA/nostruct-align/1enwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1enwA/nostruct-align/1enwA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14058/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.792847 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1eny id: 1eny alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eny/nostruct-align/1eny.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eny/nostruct-align/1eny.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eny/nostruct-align/1eny.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9615/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.165894 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1eo0A id: 1eo0A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eo0A/nostruct-align/1eo0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eo0A/nostruct-align/1eo0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eo0A/nostruct-align/1eo0A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24175/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.143921 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1epaA id: 1epaA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1epaA/nostruct-align/1epaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1epaA/nostruct-align/1epaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1epaA/nostruct-align/1epaA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11074/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.900879 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1epbA id: 1epbA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1epbA/nostruct-align/1epbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1epbA/nostruct-align/1epbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1epbA/nostruct-align/1epbA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-25976/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.601807 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1epnE id: 1epnE alignment found: /projects/compbio/experiments/models.97/pdb/1e/1epnE/nostruct-align/1epnE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1epnE/nostruct-align/1epnE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1epnE/nostruct-align/1epnE.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-6542/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.584961 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1eps id: 1eps alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eps/nostruct-align/1eps.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eps/nostruct-align/1eps.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eps/nostruct-align/1eps.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30107/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.729980 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1eq6A id: 1eq6A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eq6A/nostruct-align/1eq6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eq6A/nostruct-align/1eq6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eq6A/nostruct-align/1eq6A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1665/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.716797 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1eqfA id: 1eqfA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eqfA/nostruct-align/1eqfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eqfA/nostruct-align/1eqfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eqfA/nostruct-align/1eqfA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25118/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.063843 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1equ id: 1equ alignment found: /projects/compbio/experiments/models.97/pdb/1e/1equ/nostruct-align/1equ.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1equ/nostruct-align/1equ.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1equ/nostruct-align/1equ.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22301/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.421875 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1erd id: 1erd alignment found: /projects/compbio/experiments/models.97/pdb/1e/1erd/nostruct-align/1erd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1erd/nostruct-align/1erd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1erd/nostruct-align/1erd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19566/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.647949 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1eriA id: 1eriA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eriA/nostruct-align/1eriA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eriA/nostruct-align/1eriA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eriA/nostruct-align/1eriA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7349/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.561890 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1erp id: 1erp alignment found: /projects/compbio/experiments/models.97/pdb/1e/1erp/nostruct-align/1erp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1erp/nostruct-align/1erp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1erp/nostruct-align/1erp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23631/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.069946 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1erv id: 1erv alignment found: /projects/compbio/experiments/models.97/pdb/1e/1erv/nostruct-align/1erv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1erv/nostruct-align/1erv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1erv/nostruct-align/1erv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27013/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.001831 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ery id: 1ery alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ery/nostruct-align/1ery.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ery/nostruct-align/1ery.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ery/nostruct-align/1ery.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6851/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.163940 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1esc id: 1esc alignment found: /projects/compbio/experiments/models.97/pdb/1e/1esc/nostruct-align/1esc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1esc/nostruct-align/1esc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1esc/nostruct-align/1esc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4790/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.533936 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1esl id: 1esl alignment found: /projects/compbio/experiments/models.97/pdb/1e/1esl/nostruct-align/1esl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1esl/nostruct-align/1esl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1esl/nostruct-align/1esl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9588/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.673828 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1esl_1 id: 1esl_1 alignment found: /projects/compbio4/experiments/models.97/domains/1e/1esl_1/nostruct-align/1esl_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1esl_1/nostruct-align/1esl_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1e/1esl_1/nostruct-align/1esl_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20284/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.067871 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1esl_2 id: 1esl_2 alignment found: /projects/compbio4/experiments/models.97/domains/1e/1esl_2/nostruct-align/1esl_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1esl_2/nostruct-align/1esl_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1e/1esl_2/nostruct-align/1esl_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2770/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.855835 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1eso id: 1eso alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eso/nostruct-align/1eso.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eso/nostruct-align/1eso.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eso/nostruct-align/1eso.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32424/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.055908 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1et9A id: 1et9A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1et9A/nostruct-align/1et9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1et9A/nostruct-align/1et9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1et9A/nostruct-align/1et9A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24286/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.670898 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1eta1 id: 1eta1 alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eta1/nostruct-align/1eta1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eta1/nostruct-align/1eta1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eta1/nostruct-align/1eta1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20766/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.824951 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1etb1 id: 1etb1 alignment found: /projects/compbio/experiments/models.97/pdb/1e/1etb1/nostruct-align/1etb1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1etb1/nostruct-align/1etb1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1etb1/nostruct-align/1etb1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4894/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.556885 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1etpA id: 1etpA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1etpA/nostruct-align/1etpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1etpA/nostruct-align/1etpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1etpA/nostruct-align/1etpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1520/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.212891 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1euhA id: 1euhA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1euhA/nostruct-align/1euhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1euhA/nostruct-align/1euhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1euhA/nostruct-align/1euhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11750/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.774902 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1eur id: 1eur alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eur/nostruct-align/1eur.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eur/nostruct-align/1eur.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eur/nostruct-align/1eur.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27881/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.648926 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1eut id: 1eut alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eut/nostruct-align/1eut.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eut/nostruct-align/1eut.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eut/nostruct-align/1eut.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2972/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.526978 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1euu id: 1euu alignment found: /projects/compbio/experiments/models.97/pdb/1e/1euu/nostruct-align/1euu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1euu/nostruct-align/1euu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1euu/nostruct-align/1euu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21687/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.000977 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1euvA id: 1euvA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1euvA/nostruct-align/1euvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1euvA/nostruct-align/1euvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1euvA/nostruct-align/1euvA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31822/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.452881 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1evhA id: 1evhA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1evhA/nostruct-align/1evhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1evhA/nostruct-align/1evhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1evhA/nostruct-align/1evhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10207/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.935913 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ewaA id: 1ewaA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ewaA/nostruct-align/1ewaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ewaA/nostruct-align/1ewaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ewaA/nostruct-align/1ewaA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6819/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.100952 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ewiA id: 1ewiA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ewiA/nostruct-align/1ewiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ewiA/nostruct-align/1ewiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ewiA/nostruct-align/1ewiA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-219/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.095947 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ewxA id: 1ewxA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ewxA/nostruct-align/1ewxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ewxA/nostruct-align/1ewxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ewxA/nostruct-align/1ewxA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9561/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.264893 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ex1A id: 1ex1A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ex1A/nostruct-align/1ex1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ex1A/nostruct-align/1ex1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ex1A/nostruct-align/1ex1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24094/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.576904 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1exg id: 1exg alignment found: /projects/compbio/experiments/models.97/pdb/1e/1exg/nostruct-align/1exg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1exg/nostruct-align/1exg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1exg/nostruct-align/1exg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28695/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.147827 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1exnA id: 1exnA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1exnA/nostruct-align/1exnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1exnA/nostruct-align/1exnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1exnA/nostruct-align/1exnA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31603/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.218872 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1exnB id: 1exnB alignment found: /projects/compbio/experiments/models.97/pdb/1e/1exnB/nostruct-align/1exnB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1exnB/nostruct-align/1exnB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1exnB/nostruct-align/1exnB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25847/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.116943 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1extA id: 1extA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1extA/nostruct-align/1extA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1extA/nostruct-align/1extA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1extA/nostruct-align/1extA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26134/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.414917 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1eyvA id: 1eyvA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eyvA/nostruct-align/1eyvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eyvA/nostruct-align/1eyvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eyvA/nostruct-align/1eyvA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29858/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.841919 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ez0A id: 1ez0A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ez0A/nostruct-align/1ez0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ez0A/nostruct-align/1ez0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ez0A/nostruct-align/1ez0A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4933/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.706909 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ezm id: 1ezm alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ezm/nostruct-align/1ezm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ezm/nostruct-align/1ezm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ezm/nostruct-align/1ezm.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7502/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.831909 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ezm_1 id: 1ezm_1 alignment found: /projects/compbio4/experiments/models.97/domains/1e/1ezm_1/nostruct-align/1ezm_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1ezm_1/nostruct-align/1ezm_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1e/1ezm_1/nostruct-align/1ezm_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22114/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.672974 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ezm_2 id: 1ezm_2 alignment found: /projects/compbio4/experiments/models.97/domains/1e/1ezm_2/nostruct-align/1ezm_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1ezm_2/nostruct-align/1ezm_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1e/1ezm_2/nostruct-align/1ezm_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12981/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.310913 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1f13A id: 1f13A alignment found: /projects/compbio/experiments/models.97/pdb/1f/1f13A/nostruct-align/1f13A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1f13A/nostruct-align/1f13A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1f13A/nostruct-align/1f13A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2960/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.776978 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1f3z id: 1f3z alignment found: /projects/compbio/experiments/models.97/pdb/1f/1f3z/nostruct-align/1f3z.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1f3z/nostruct-align/1f3z.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1f3z/nostruct-align/1f3z.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6334/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.659912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1f58P id: 1f58P alignment found: /projects/compbio/experiments/models.97/pdb/1f/1f58P/nostruct-align/1f58P.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1f58P/nostruct-align/1f58P.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1f58P/nostruct-align/1f58P.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3014/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -4.360962 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fadA id: 1fadA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fadA/nostruct-align/1fadA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fadA/nostruct-align/1fadA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fadA/nostruct-align/1fadA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24051/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.391968 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1faq id: 1faq alignment found: /projects/compbio/experiments/models.97/pdb/1f/1faq/nostruct-align/1faq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1faq/nostruct-align/1faq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1faq/nostruct-align/1faq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18423/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.642822 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1far id: 1far alignment found: /projects/compbio/experiments/models.97/pdb/1f/1far/nostruct-align/1far.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1far/nostruct-align/1far.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1far/nostruct-align/1far.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26457/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.642822 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fas id: 1fas alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fas/nostruct-align/1fas.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fas/nostruct-align/1fas.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fas/nostruct-align/1fas.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32638/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.830811 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fbaA id: 1fbaA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fbaA/nostruct-align/1fbaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fbaA/nostruct-align/1fbaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fbaA/nostruct-align/1fbaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18643/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.215942 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fbnA id: 1fbnA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fbnA/nostruct-align/1fbnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fbnA/nostruct-align/1fbnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fbnA/nostruct-align/1fbnA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16223/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.928955 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fbr id: 1fbr alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fbr/nostruct-align/1fbr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fbr/nostruct-align/1fbr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fbr/nostruct-align/1fbr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8181/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.785889 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fbr_1 id: 1fbr_1 alignment found: /projects/compbio4/experiments/models.97/domains/1f/1fbr_1/nostruct-align/1fbr_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1f/1fbr_1/nostruct-align/1fbr_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1f/1fbr_1/nostruct-align/1fbr_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18106/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.810913 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fbr_2 id: 1fbr_2 alignment found: /projects/compbio4/experiments/models.97/domains/1f/1fbr_2/nostruct-align/1fbr_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1f/1fbr_2/nostruct-align/1fbr_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1f/1fbr_2/nostruct-align/1fbr_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30095/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.737915 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fc1A id: 1fc1A alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fc1A/nostruct-align/1fc1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fc1A/nostruct-align/1fc1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fc1A/nostruct-align/1fc1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22882/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.542847 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fc2C id: 1fc2C alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fc2C/nostruct-align/1fc2C.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fc2C/nostruct-align/1fc2C.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fc2C/nostruct-align/1fc2C.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16586/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.133911 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fca id: 1fca alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fca/nostruct-align/1fca.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fca/nostruct-align/1fca.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fca/nostruct-align/1fca.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6742/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.455933 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fcdA id: 1fcdA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fcdA/nostruct-align/1fcdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fcdA/nostruct-align/1fcdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fcdA/nostruct-align/1fcdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10836/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.934937 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fcdA_1 id: 1fcdA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1f/1fcdA_1/nostruct-align/1fcdA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1f/1fcdA_1/nostruct-align/1fcdA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1f/1fcdA_1/nostruct-align/1fcdA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30732/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.491943 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fcdA_2 id: 1fcdA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1f/1fcdA_2/nostruct-align/1fcdA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1f/1fcdA_2/nostruct-align/1fcdA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1f/1fcdA_2/nostruct-align/1fcdA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10296/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.722900 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fcdA_3 id: 1fcdA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1f/1fcdA_3/nostruct-align/1fcdA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1f/1fcdA_3/nostruct-align/1fcdA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1f/1fcdA_3/nostruct-align/1fcdA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16814/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.893921 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fcdC id: 1fcdC alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fcdC/nostruct-align/1fcdC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fcdC/nostruct-align/1fcdC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fcdC/nostruct-align/1fcdC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25036/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.176880 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fcdC_1 id: 1fcdC_1 alignment found: /projects/compbio4/experiments/models.97/domains/1f/1fcdC_1/nostruct-align/1fcdC_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1f/1fcdC_1/nostruct-align/1fcdC_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1f/1fcdC_1/nostruct-align/1fcdC_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26242/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.118896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fcdC_2 id: 1fcdC_2 alignment found: /projects/compbio4/experiments/models.97/domains/1f/1fcdC_2/nostruct-align/1fcdC_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1f/1fcdC_2/nostruct-align/1fcdC_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1f/1fcdC_2/nostruct-align/1fcdC_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4503/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.628906 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fce id: 1fce alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fce/nostruct-align/1fce.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fce/nostruct-align/1fce.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fce/nostruct-align/1fce.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27186/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.639893 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fct id: 1fct alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fct/nostruct-align/1fct.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fct/nostruct-align/1fct.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fct/nostruct-align/1fct.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3092/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.393921 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fd2 id: 1fd2 alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fd2/nostruct-align/1fd2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fd2/nostruct-align/1fd2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fd2/nostruct-align/1fd2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3131/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.241821 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fdd id: 1fdd alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fdd/nostruct-align/1fdd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fdd/nostruct-align/1fdd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fdd/nostruct-align/1fdd.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32376/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.339966 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fdi id: 1fdi alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fdi/nostruct-align/1fdi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fdi/nostruct-align/1fdi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fdi/nostruct-align/1fdi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6221/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -23.164917 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fdm id: 1fdm alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fdm/nostruct-align/1fdm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fdm/nostruct-align/1fdm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fdm/nostruct-align/1fdm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-476/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.902954 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fdo id: 1fdo alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fdo/nostruct-align/1fdo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fdo/nostruct-align/1fdo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fdo/nostruct-align/1fdo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10032/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -22.072876 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fdr id: 1fdr alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fdr/nostruct-align/1fdr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fdr/nostruct-align/1fdr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fdr/nostruct-align/1fdr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-751/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.398804 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fds id: 1fds alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fds/nostruct-align/1fds.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fds/nostruct-align/1fds.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fds/nostruct-align/1fds.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16370/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.638916 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fehA id: 1fehA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fehA/nostruct-align/1fehA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fehA/nostruct-align/1fehA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fehA/nostruct-align/1fehA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20244/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.354858 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fepA id: 1fepA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fepA/nostruct-align/1fepA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fepA/nostruct-align/1fepA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fepA/nostruct-align/1fepA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3469/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.075928 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fgjA id: 1fgjA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fgjA/nostruct-align/1fgjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fgjA/nostruct-align/1fgjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fgjA/nostruct-align/1fgjA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9821/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.228882 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fgkA id: 1fgkA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fgkA/nostruct-align/1fgkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fgkA/nostruct-align/1fgkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fgkA/nostruct-align/1fgkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1239/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.717896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fglB id: 1fglB alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fglB/nostruct-align/1fglB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fglB/nostruct-align/1fglB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fglB/nostruct-align/1fglB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21170/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -4.729858 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fgs id: 1fgs alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fgs/nostruct-align/1fgs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fgs/nostruct-align/1fgs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fgs/nostruct-align/1fgs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23714/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.568970 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fha id: 1fha alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fha/nostruct-align/1fha.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fha/nostruct-align/1fha.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fha/nostruct-align/1fha.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26021/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.919800 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fht id: 1fht alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fht/nostruct-align/1fht.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fht/nostruct-align/1fht.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fht/nostruct-align/1fht.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19223/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.625977 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fipA id: 1fipA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fipA/nostruct-align/1fipA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fipA/nostruct-align/1fipA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fipA/nostruct-align/1fipA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24095/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.432007 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fit id: 1fit alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fit/nostruct-align/1fit.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fit/nostruct-align/1fit.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fit/nostruct-align/1fit.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10639/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.417847 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fivA id: 1fivA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fivA/nostruct-align/1fivA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fivA/nostruct-align/1fivA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fivA/nostruct-align/1fivA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24575/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.889893 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fiy id: 1fiy alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fiy/nostruct-align/1fiy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fiy/nostruct-align/1fiy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fiy/nostruct-align/1fiy.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31583/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.955811 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fjlA id: 1fjlA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fjlA/nostruct-align/1fjlA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fjlA/nostruct-align/1fjlA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fjlA/nostruct-align/1fjlA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9566/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.440918 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fjmA id: 1fjmA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fjmA/nostruct-align/1fjmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fjmA/nostruct-align/1fjmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fjmA/nostruct-align/1fjmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30107/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.851929 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fkd id: 1fkd alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fkd/nostruct-align/1fkd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fkd/nostruct-align/1fkd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fkd/nostruct-align/1fkd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23169/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.601929 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fkj id: 1fkj alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fkj/nostruct-align/1fkj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fkj/nostruct-align/1fkj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fkj/nostruct-align/1fkj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26876/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.493896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1flcA id: 1flcA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1flcA/nostruct-align/1flcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1flcA/nostruct-align/1flcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1flcA/nostruct-align/1flcA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-470/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.027832 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1flcB id: 1flcB alignment found: /projects/compbio/experiments/models.97/pdb/1f/1flcB/nostruct-align/1flcB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1flcB/nostruct-align/1flcB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1flcB/nostruct-align/1flcB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22261/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.076904 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fleI id: 1fleI alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fleI/nostruct-align/1fleI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fleI/nostruct-align/1fleI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fleI/nostruct-align/1fleI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5739/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.083862 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fliA id: 1fliA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fliA/nostruct-align/1fliA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fliA/nostruct-align/1fliA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fliA/nostruct-align/1fliA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11092/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.975952 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1flmA id: 1flmA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1flmA/nostruct-align/1flmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1flmA/nostruct-align/1flmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1flmA/nostruct-align/1flmA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27506/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.102905 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1flp id: 1flp alignment found: /projects/compbio/experiments/models.97/pdb/1f/1flp/nostruct-align/1flp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1flp/nostruct-align/1flp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1flp/nostruct-align/1flp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13562/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.155884 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fltV id: 1fltV alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fltV/nostruct-align/1fltV.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fltV/nostruct-align/1fltV.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fltV/nostruct-align/1fltV.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26334/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.553955 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fltX id: 1fltX alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fltX/nostruct-align/1fltX.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fltX/nostruct-align/1fltX.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fltX/nostruct-align/1fltX.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-533/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.724854 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fltY id: 1fltY alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fltY/nostruct-align/1fltY.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fltY/nostruct-align/1fltY.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fltY/nostruct-align/1fltY.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26548/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.666870 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fmb id: 1fmb alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fmb/nostruct-align/1fmb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fmb/nostruct-align/1fmb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fmb/nostruct-align/1fmb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30495/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.526001 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fmk id: 1fmk alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fmk/nostruct-align/1fmk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fmk/nostruct-align/1fmk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fmk/nostruct-align/1fmk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4768/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.150879 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fmtA id: 1fmtA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fmtA/nostruct-align/1fmtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fmtA/nostruct-align/1fmtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fmtA/nostruct-align/1fmtA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-800/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.171875 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fmtB id: 1fmtB alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fmtB/nostruct-align/1fmtB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fmtB/nostruct-align/1fmtB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fmtB/nostruct-align/1fmtB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29030/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.278809 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fna id: 1fna alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fna/nostruct-align/1fna.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fna/nostruct-align/1fna.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fna/nostruct-align/1fna.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11909/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.691895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fnb_1 id: 1fnb_1 alignment found: /projects/compbio4/experiments/models.97/domains/1f/1fnb_1/nostruct-align/1fnb_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1f/1fnb_1/nostruct-align/1fnb_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1f/1fnb_1/nostruct-align/1fnb_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11219/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.736938 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fnb_2 id: 1fnb_2 alignment found: /projects/compbio4/experiments/models.97/domains/1f/1fnb_2/nostruct-align/1fnb_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1f/1fnb_2/nostruct-align/1fnb_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1f/1fnb_2/nostruct-align/1fnb_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31999/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.791870 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fnc id: 1fnc alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fnc/nostruct-align/1fnc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fnc/nostruct-align/1fnc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fnc/nostruct-align/1fnc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15671/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.482910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fnd id: 1fnd alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fnd/nostruct-align/1fnd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fnd/nostruct-align/1fnd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fnd/nostruct-align/1fnd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16778/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.994873 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fnf id: 1fnf alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fnf/nostruct-align/1fnf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fnf/nostruct-align/1fnf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fnf/nostruct-align/1fnf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29966/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.681885 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fnhA id: 1fnhA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fnhA/nostruct-align/1fnhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fnhA/nostruct-align/1fnhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fnhA/nostruct-align/1fnhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18871/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.860840 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fohA id: 1fohA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fohA/nostruct-align/1fohA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fohA/nostruct-align/1fohA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fohA/nostruct-align/1fohA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3185/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.052856 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fokA id: 1fokA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fokA/nostruct-align/1fokA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fokA/nostruct-align/1fokA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fokA/nostruct-align/1fokA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25983/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.846802 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1forL id: 1forL alignment found: /projects/compbio/experiments/models.97/pdb/1f/1forL/nostruct-align/1forL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1forL/nostruct-align/1forL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1forL/nostruct-align/1forL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14054/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.537842 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fosE id: 1fosE alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fosE/nostruct-align/1fosE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fosE/nostruct-align/1fosE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fosE/nostruct-align/1fosE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13579/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.863892 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fosF id: 1fosF alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fosF/nostruct-align/1fosF.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fosF/nostruct-align/1fosF.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fosF/nostruct-align/1fosF.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29502/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.117798 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fpkA id: 1fpkA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fpkA/nostruct-align/1fpkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fpkA/nostruct-align/1fpkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fpkA/nostruct-align/1fpkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20321/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.985840 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fps id: 1fps alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fps/nostruct-align/1fps.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fps/nostruct-align/1fps.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fps/nostruct-align/1fps.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11868/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.857910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1frb id: 1frb alignment found: /projects/compbio/experiments/models.97/pdb/1f/1frb/nostruct-align/1frb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1frb/nostruct-align/1frb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1frb/nostruct-align/1frb.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15258/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.027954 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1frd id: 1frd alignment found: /projects/compbio/experiments/models.97/pdb/1f/1frd/nostruct-align/1frd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1frd/nostruct-align/1frd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1frd/nostruct-align/1frd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31807/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.016968 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fre id: 1fre alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fre/nostruct-align/1fre.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fre/nostruct-align/1fre.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fre/nostruct-align/1fre.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23051/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.667847 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1frpA id: 1frpA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1frpA/nostruct-align/1frpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1frpA/nostruct-align/1frpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1frpA/nostruct-align/1frpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22803/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.944946 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1frvB id: 1frvB alignment found: /projects/compbio/experiments/models.97/pdb/1f/1frvB/nostruct-align/1frvB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1frvB/nostruct-align/1frvB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1frvB/nostruct-align/1frvB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19734/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.842896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fsb id: 1fsb alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fsb/nostruct-align/1fsb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fsb/nostruct-align/1fsb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fsb/nostruct-align/1fsb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2762/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.898926 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fsz id: 1fsz alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fsz/nostruct-align/1fsz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fsz/nostruct-align/1fsz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fsz/nostruct-align/1fsz.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1871/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.196899 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ft1A id: 1ft1A alignment found: /projects/compbio/experiments/models.97/pdb/1f/1ft1A/nostruct-align/1ft1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1ft1A/nostruct-align/1ft1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1ft1A/nostruct-align/1ft1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8072/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.626831 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ft1B id: 1ft1B alignment found: /projects/compbio/experiments/models.97/pdb/1f/1ft1B/nostruct-align/1ft1B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1ft1B/nostruct-align/1ft1B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1ft1B/nostruct-align/1ft1B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13782/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.205933 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ftpA id: 1ftpA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1ftpA/nostruct-align/1ftpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1ftpA/nostruct-align/1ftpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1ftpA/nostruct-align/1ftpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27983/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.836914 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ftrA id: 1ftrA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1ftrA/nostruct-align/1ftrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1ftrA/nostruct-align/1ftrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1ftrA/nostruct-align/1ftrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13305/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.094849 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ftt id: 1ftt alignment found: /projects/compbio/experiments/models.97/pdb/1f/1ftt/nostruct-align/1ftt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1ftt/nostruct-align/1ftt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1ftt/nostruct-align/1ftt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11203/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.246948 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fua id: 1fua alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fua/nostruct-align/1fua.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fua/nostruct-align/1fua.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fua/nostruct-align/1fua.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28485/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.774902 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fuiA id: 1fuiA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fuiA/nostruct-align/1fuiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fuiA/nostruct-align/1fuiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fuiA/nostruct-align/1fuiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20361/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.865845 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fumB id: 1fumB alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fumB/nostruct-align/1fumB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fumB/nostruct-align/1fumB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fumB/nostruct-align/1fumB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22493/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.954834 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fumC id: 1fumC alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fumC/nostruct-align/1fumC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fumC/nostruct-align/1fumC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fumC/nostruct-align/1fumC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14201/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.749878 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fumD id: 1fumD alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fumD/nostruct-align/1fumD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fumD/nostruct-align/1fumD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fumD/nostruct-align/1fumD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24866/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.411987 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1furA id: 1furA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1furA/nostruct-align/1furA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1furA/nostruct-align/1furA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1furA/nostruct-align/1furA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9005/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.346924 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fus id: 1fus alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fus/nostruct-align/1fus.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fus/nostruct-align/1fus.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fus/nostruct-align/1fus.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4345/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.610840 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fvkA id: 1fvkA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fvkA/nostruct-align/1fvkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fvkA/nostruct-align/1fvkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fvkA/nostruct-align/1fvkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14006/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.278931 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fvl id: 1fvl alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fvl/nostruct-align/1fvl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fvl/nostruct-align/1fvl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fvl/nostruct-align/1fvl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19425/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.699829 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fwcA id: 1fwcA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fwcA/nostruct-align/1fwcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fwcA/nostruct-align/1fwcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fwcA/nostruct-align/1fwcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16943/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.816895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fwcB id: 1fwcB alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fwcB/nostruct-align/1fwcB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fwcB/nostruct-align/1fwcB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fwcB/nostruct-align/1fwcB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3529/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.292847 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fwcC id: 1fwcC alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fwcC/nostruct-align/1fwcC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fwcC/nostruct-align/1fwcC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fwcC/nostruct-align/1fwcC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27320/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.007935 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fxd id: 1fxd alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fxd/nostruct-align/1fxd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fxd/nostruct-align/1fxd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fxd/nostruct-align/1fxd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26607/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.250854 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fxrA id: 1fxrA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fxrA/nostruct-align/1fxrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fxrA/nostruct-align/1fxrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fxrA/nostruct-align/1fxrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27933/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.244995 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fyc id: 1fyc alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fyc/nostruct-align/1fyc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fyc/nostruct-align/1fyc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fyc/nostruct-align/1fyc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26586/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.100830 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fzaB id: 1fzaB alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fzaB/nostruct-align/1fzaB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fzaB/nostruct-align/1fzaB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fzaB/nostruct-align/1fzaB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12712/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.132935 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fzcA id: 1fzcA alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fzcA/nostruct-align/1fzcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fzcA/nostruct-align/1fzcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fzcA/nostruct-align/1fzcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-797/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.629883 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1fzgD id: 1fzgD alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fzgD/nostruct-align/1fzgD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fzgD/nostruct-align/1fzgD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1f/1fzgD/nostruct-align/1fzgD.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29302/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.069824 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1g31A id: 1g31A alignment found: /projects/compbio/experiments/models.97/pdb/1g/1g31A/nostruct-align/1g31A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1g31A/nostruct-align/1g31A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1g31A/nostruct-align/1g31A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13047/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.333862 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1g3p id: 1g3p alignment found: /projects/compbio/experiments/models.97/pdb/1g/1g3p/nostruct-align/1g3p.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1g3p/nostruct-align/1g3p.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1g3p/nostruct-align/1g3p.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5218/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.781860 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gab id: 1gab alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gab/nostruct-align/1gab.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gab/nostruct-align/1gab.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gab/nostruct-align/1gab.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18692/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.305908 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gai id: 1gai alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gai/nostruct-align/1gai.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gai/nostruct-align/1gai.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gai/nostruct-align/1gai.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18460/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.533813 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gal id: 1gal alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gal/nostruct-align/1gal.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gal/nostruct-align/1gal.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gal/nostruct-align/1gal.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8565/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.079834 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gal_1 id: 1gal_1 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gal_1/nostruct-align/1gal_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gal_1/nostruct-align/1gal_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gal_1/nostruct-align/1gal_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18984/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.571899 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gal_2 id: 1gal_2 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gal_2/nostruct-align/1gal_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gal_2/nostruct-align/1gal_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gal_2/nostruct-align/1gal_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11377/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.934814 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1garA id: 1garA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1garA/nostruct-align/1garA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1garA/nostruct-align/1garA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1garA/nostruct-align/1garA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19801/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.488892 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gatA id: 1gatA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gatA/nostruct-align/1gatA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gatA/nostruct-align/1gatA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gatA/nostruct-align/1gatA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-26553/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.996826 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gbs id: 1gbs alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gbs/nostruct-align/1gbs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gbs/nostruct-align/1gbs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gbs/nostruct-align/1gbs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5417/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.734863 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gc1G id: 1gc1G alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gc1G/nostruct-align/1gc1G.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gc1G/nostruct-align/1gc1G.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gc1G/nostruct-align/1gc1G.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32334/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.421875 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gc1H id: 1gc1H alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gc1H/nostruct-align/1gc1H.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gc1H/nostruct-align/1gc1H.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gc1H/nostruct-align/1gc1H.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15106/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.345947 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gca id: 1gca alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gca/nostruct-align/1gca.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gca/nostruct-align/1gca.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gca/nostruct-align/1gca.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23956/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.868896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gcb id: 1gcb alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gcb/nostruct-align/1gcb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gcb/nostruct-align/1gcb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gcb/nostruct-align/1gcb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12613/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.855957 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gceA id: 1gceA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gceA/nostruct-align/1gceA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gceA/nostruct-align/1gceA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gceA/nostruct-align/1gceA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9460/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.758911 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gcf id: 1gcf alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gcf/nostruct-align/1gcf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gcf/nostruct-align/1gcf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gcf/nostruct-align/1gcf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24967/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.227905 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gci id: 1gci alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gci/nostruct-align/1gci.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gci/nostruct-align/1gci.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gci/nostruct-align/1gci.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3956/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.576904 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gcmA id: 1gcmA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gcmA/nostruct-align/1gcmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gcmA/nostruct-align/1gcmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gcmA/nostruct-align/1gcmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20877/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.694946 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gctA id: 1gctA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gctA/nostruct-align/1gctA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gctA/nostruct-align/1gctA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gctA/nostruct-align/1gctA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8133/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.838867 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gd1O id: 1gd1O alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gd1O/nostruct-align/1gd1O.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gd1O/nostruct-align/1gd1O.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gd1O/nostruct-align/1gd1O.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31826/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.698975 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gd1O_1 id: 1gd1O_1 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gd1O_1/nostruct-align/1gd1O_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gd1O_1/nostruct-align/1gd1O_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gd1O_1/nostruct-align/1gd1O_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6794/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.023926 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gd1O_2 id: 1gd1O_2 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gd1O_2/nostruct-align/1gd1O_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gd1O_2/nostruct-align/1gd1O_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gd1O_2/nostruct-align/1gd1O_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9691/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.163818 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gdhA id: 1gdhA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gdhA/nostruct-align/1gdhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gdhA/nostruct-align/1gdhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gdhA/nostruct-align/1gdhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25327/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.659912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gdhA_1 id: 1gdhA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gdhA_1/nostruct-align/1gdhA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gdhA_1/nostruct-align/1gdhA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gdhA_1/nostruct-align/1gdhA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32082/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.816895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gdhA_2 id: 1gdhA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gdhA_2/nostruct-align/1gdhA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gdhA_2/nostruct-align/1gdhA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gdhA_2/nostruct-align/1gdhA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-51/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.693848 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gdoA id: 1gdoA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gdoA/nostruct-align/1gdoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gdoA/nostruct-align/1gdoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gdoA/nostruct-align/1gdoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19476/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.111816 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gdoB id: 1gdoB alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gdoB/nostruct-align/1gdoB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gdoB/nostruct-align/1gdoB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gdoB/nostruct-align/1gdoB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25042/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.049805 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gen id: 1gen alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gen/nostruct-align/1gen.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gen/nostruct-align/1gen.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gen/nostruct-align/1gen.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16095/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.833862 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gesA_1 id: 1gesA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gesA_1/nostruct-align/1gesA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gesA_1/nostruct-align/1gesA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gesA_1/nostruct-align/1gesA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15366/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.350952 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gesA_2 id: 1gesA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gesA_2/nostruct-align/1gesA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gesA_2/nostruct-align/1gesA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gesA_2/nostruct-align/1gesA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-223/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.360962 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gesA_3 id: 1gesA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gesA_3/nostruct-align/1gesA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gesA_3/nostruct-align/1gesA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gesA_3/nostruct-align/1gesA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12863/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.178833 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gfs id: 1gfs alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gfs/nostruct-align/1gfs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gfs/nostruct-align/1gfs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gfs/nostruct-align/1gfs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6510/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.847900 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gggB id: 1gggB alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gggB/nostruct-align/1gggB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gggB/nostruct-align/1gggB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gggB/nostruct-align/1gggB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22308/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.957886 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ggtA_1 id: 1ggtA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1ggtA_1/nostruct-align/1ggtA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1ggtA_1/nostruct-align/1ggtA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1ggtA_1/nostruct-align/1ggtA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2092/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.593872 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ggtA_2 id: 1ggtA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1ggtA_2/nostruct-align/1ggtA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1ggtA_2/nostruct-align/1ggtA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1ggtA_2/nostruct-align/1ggtA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19290/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.951904 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ggtA_3 id: 1ggtA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1ggtA_3/nostruct-align/1ggtA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1ggtA_3/nostruct-align/1ggtA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1ggtA_3/nostruct-align/1ggtA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15494/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.212891 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ggtA_4 id: 1ggtA_4 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1ggtA_4/nostruct-align/1ggtA_4.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1ggtA_4/nostruct-align/1ggtA_4.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1ggtA_4/nostruct-align/1ggtA_4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15564/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.909790 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ggtB id: 1ggtB alignment found: /projects/compbio/experiments/models.97/pdb/1g/1ggtB/nostruct-align/1ggtB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1ggtB/nostruct-align/1ggtB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1ggtB/nostruct-align/1ggtB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-10866/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.802856 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ghj id: 1ghj alignment found: /projects/compbio/experiments/models.97/pdb/1g/1ghj/nostruct-align/1ghj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1ghj/nostruct-align/1ghj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1ghj/nostruct-align/1ghj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19560/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.355835 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ghr id: 1ghr alignment found: /projects/compbio/experiments/models.97/pdb/1g/1ghr/nostruct-align/1ghr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1ghr/nostruct-align/1ghr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1ghr/nostruct-align/1ghr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-240/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.306885 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gks id: 1gks alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gks/nostruct-align/1gks.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gks/nostruct-align/1gks.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gks/nostruct-align/1gks.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31602/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.732910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gky id: 1gky alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gky/nostruct-align/1gky.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gky/nostruct-align/1gky.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gky/nostruct-align/1gky.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26439/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.193848 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1glaF id: 1glaF alignment found: /projects/compbio/experiments/models.97/pdb/1g/1glaF/nostruct-align/1glaF.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1glaF/nostruct-align/1glaF.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1glaF/nostruct-align/1glaF.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12133/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.404907 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1glaG_1 id: 1glaG_1 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1glaG_1/nostruct-align/1glaG_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1glaG_1/nostruct-align/1glaG_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1glaG_1/nostruct-align/1glaG_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32256/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.037842 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1glaG_2 id: 1glaG_2 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1glaG_2/nostruct-align/1glaG_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1glaG_2/nostruct-align/1glaG_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1glaG_2/nostruct-align/1glaG_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14260/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.302856 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1glcG id: 1glcG alignment found: /projects/compbio/experiments/models.97/pdb/1g/1glcG/nostruct-align/1glcG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1glcG/nostruct-align/1glcG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1glcG/nostruct-align/1glcG.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18180/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.537964 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1glm id: 1glm alignment found: /projects/compbio/experiments/models.97/pdb/1g/1glm/nostruct-align/1glm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1glm/nostruct-align/1glm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1glm/nostruct-align/1glm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9925/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.520874 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gln id: 1gln alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gln/nostruct-align/1gln.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gln/nostruct-align/1gln.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gln/nostruct-align/1gln.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28155/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -69.305908 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gln_1 id: 1gln_1 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gln_1/nostruct-align/1gln_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gln_1/nostruct-align/1gln_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gln_1/nostruct-align/1gln_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-364/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.243896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gln_2 id: 1gln_2 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gln_2/nostruct-align/1gln_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gln_2/nostruct-align/1gln_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gln_2/nostruct-align/1gln_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25511/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.320923 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1glqA_1 id: 1glqA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1glqA_1/nostruct-align/1glqA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1glqA_1/nostruct-align/1glqA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1glqA_1/nostruct-align/1glqA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11796/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.221924 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1glqA_2 id: 1glqA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1glqA_2/nostruct-align/1glqA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1glqA_2/nostruct-align/1glqA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1glqA_2/nostruct-align/1glqA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27608/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.948853 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gmpA id: 1gmpA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gmpA/nostruct-align/1gmpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gmpA/nostruct-align/1gmpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gmpA/nostruct-align/1gmpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10632/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.670898 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gnd id: 1gnd alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gnd/nostruct-align/1gnd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gnd/nostruct-align/1gnd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gnd/nostruct-align/1gnd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17375/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.247925 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gnhA id: 1gnhA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gnhA/nostruct-align/1gnhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gnhA/nostruct-align/1gnhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gnhA/nostruct-align/1gnhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6044/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.316895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gnwA id: 1gnwA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gnwA/nostruct-align/1gnwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gnwA/nostruct-align/1gnwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gnwA/nostruct-align/1gnwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9011/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.933960 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gof id: 1gof alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gof/nostruct-align/1gof.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gof/nostruct-align/1gof.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gof/nostruct-align/1gof.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24329/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.997925 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gof_1 id: 1gof_1 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gof_1/nostruct-align/1gof_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gof_1/nostruct-align/1gof_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gof_1/nostruct-align/1gof_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-440/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.518799 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gof_2 id: 1gof_2 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gof_2/nostruct-align/1gof_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gof_2/nostruct-align/1gof_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gof_2/nostruct-align/1gof_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18859/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.909912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gof_3 id: 1gof_3 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gof_3/nostruct-align/1gof_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gof_3/nostruct-align/1gof_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gof_3/nostruct-align/1gof_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12549/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.415894 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1goh id: 1goh alignment found: /projects/compbio/experiments/models.97/pdb/1g/1goh/nostruct-align/1goh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1goh/nostruct-align/1goh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1goh/nostruct-align/1goh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13905/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.418945 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gotB id: 1gotB alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gotB/nostruct-align/1gotB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gotB/nostruct-align/1gotB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gotB/nostruct-align/1gotB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14355/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -19.718872 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gox id: 1gox alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gox/nostruct-align/1gox.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gox/nostruct-align/1gox.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gox/nostruct-align/1gox.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28156/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.351929 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gp1A id: 1gp1A alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gp1A/nostruct-align/1gp1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gp1A/nostruct-align/1gp1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gp1A/nostruct-align/1gp1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6718/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.721802 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gpb id: 1gpb alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gpb/nostruct-align/1gpb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gpb/nostruct-align/1gpb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gpb/nostruct-align/1gpb.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16823/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.986938 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gpc id: 1gpc alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gpc/nostruct-align/1gpc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gpc/nostruct-align/1gpc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gpc/nostruct-align/1gpc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12060/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.580933 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gpeA id: 1gpeA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gpeA/nostruct-align/1gpeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gpeA/nostruct-align/1gpeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gpeA/nostruct-align/1gpeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31835/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.335815 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gph1_1 id: 1gph1_1 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gph1_1/nostruct-align/1gph1_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gph1_1/nostruct-align/1gph1_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gph1_1/nostruct-align/1gph1_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1802/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.317993 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gph1_2 id: 1gph1_2 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gph1_2/nostruct-align/1gph1_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gph1_2/nostruct-align/1gph1_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gph1_2/nostruct-align/1gph1_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4264/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.100952 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gpl id: 1gpl alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gpl/nostruct-align/1gpl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gpl/nostruct-align/1gpl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gpl/nostruct-align/1gpl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25692/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.814819 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gpmA id: 1gpmA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gpmA/nostruct-align/1gpmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gpmA/nostruct-align/1gpmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gpmA/nostruct-align/1gpmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16312/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.875977 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gpmA_1 id: 1gpmA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gpmA_1/nostruct-align/1gpmA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gpmA_1/nostruct-align/1gpmA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gpmA_1/nostruct-align/1gpmA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2657/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.582886 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gpmA_2 id: 1gpmA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gpmA_2/nostruct-align/1gpmA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gpmA_2/nostruct-align/1gpmA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gpmA_2/nostruct-align/1gpmA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13272/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.136841 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gpmA_3 id: 1gpmA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gpmA_3/nostruct-align/1gpmA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gpmA_3/nostruct-align/1gpmA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gpmA_3/nostruct-align/1gpmA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3449/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.085815 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gpr id: 1gpr alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gpr/nostruct-align/1gpr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gpr/nostruct-align/1gpr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gpr/nostruct-align/1gpr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12938/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.759888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gps id: 1gps alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gps/nostruct-align/1gps.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gps/nostruct-align/1gps.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gps/nostruct-align/1gps.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6088/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.234863 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gpt id: 1gpt alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gpt/nostruct-align/1gpt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gpt/nostruct-align/1gpt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gpt/nostruct-align/1gpt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10320/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.241821 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gr2A id: 1gr2A alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gr2A/nostruct-align/1gr2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gr2A/nostruct-align/1gr2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gr2A/nostruct-align/1gr2A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30520/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.217896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1griA id: 1griA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1griA/nostruct-align/1griA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1griA/nostruct-align/1griA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1griA/nostruct-align/1griA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18518/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.912842 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1grj id: 1grj alignment found: /projects/compbio/experiments/models.97/pdb/1g/1grj/nostruct-align/1grj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1grj/nostruct-align/1grj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1grj/nostruct-align/1grj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26484/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.395874 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1grj_1 id: 1grj_1 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1grj_1/nostruct-align/1grj_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1grj_1/nostruct-align/1grj_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1grj_1/nostruct-align/1grj_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2461/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.121948 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1grj_2 id: 1grj_2 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1grj_2/nostruct-align/1grj_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1grj_2/nostruct-align/1grj_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1grj_2/nostruct-align/1grj_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14357/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.487915 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1grl_1 id: 1grl_1 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1grl_1/nostruct-align/1grl_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1grl_1/nostruct-align/1grl_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1grl_1/nostruct-align/1grl_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26923/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.339966 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1grl_2 id: 1grl_2 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1grl_2/nostruct-align/1grl_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1grl_2/nostruct-align/1grl_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1grl_2/nostruct-align/1grl_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11573/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.554810 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1grl_3 id: 1grl_3 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1grl_3/nostruct-align/1grl_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1grl_3/nostruct-align/1grl_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1grl_3/nostruct-align/1grl_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2857/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.884888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1grx id: 1grx alignment found: /projects/compbio/experiments/models.97/pdb/1g/1grx/nostruct-align/1grx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1grx/nostruct-align/1grx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1grx/nostruct-align/1grx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23762/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.804932 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gsa id: 1gsa alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gsa/nostruct-align/1gsa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gsa/nostruct-align/1gsa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gsa/nostruct-align/1gsa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5633/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.113892 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gseA id: 1gseA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gseA/nostruct-align/1gseA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gseA/nostruct-align/1gseA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gseA/nostruct-align/1gseA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9225/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.925903 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gseA_1 id: 1gseA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gseA_1/nostruct-align/1gseA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gseA_1/nostruct-align/1gseA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gseA_1/nostruct-align/1gseA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20277/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.118896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gseA_2 id: 1gseA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gseA_2/nostruct-align/1gseA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gseA_2/nostruct-align/1gseA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gseA_2/nostruct-align/1gseA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17621/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.506958 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gsoA id: 1gsoA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gsoA/nostruct-align/1gsoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gsoA/nostruct-align/1gsoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gsoA/nostruct-align/1gsoA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23549/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.000854 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gtqA id: 1gtqA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gtqA/nostruct-align/1gtqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gtqA/nostruct-align/1gtqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gtqA/nostruct-align/1gtqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18328/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.140991 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gtrA id: 1gtrA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gtrA/nostruct-align/1gtrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gtrA/nostruct-align/1gtrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gtrA/nostruct-align/1gtrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4526/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.565918 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gtrA_1 id: 1gtrA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gtrA_1/nostruct-align/1gtrA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gtrA_1/nostruct-align/1gtrA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gtrA_1/nostruct-align/1gtrA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16105/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.533813 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gtrA_2 id: 1gtrA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gtrA_2/nostruct-align/1gtrA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gtrA_2/nostruct-align/1gtrA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1g/1gtrA_2/nostruct-align/1gtrA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21484/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.473877 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gtxA id: 1gtxA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gtxA/nostruct-align/1gtxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gtxA/nostruct-align/1gtxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gtxA/nostruct-align/1gtxA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21333/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.240967 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gumA id: 1gumA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gumA/nostruct-align/1gumA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gumA/nostruct-align/1gumA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gumA/nostruct-align/1gumA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-31324/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.877930 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1guqA id: 1guqA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1guqA/nostruct-align/1guqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1guqA/nostruct-align/1guqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1guqA/nostruct-align/1guqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10530/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.341797 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1guxA id: 1guxA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1guxA/nostruct-align/1guxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1guxA/nostruct-align/1guxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1guxA/nostruct-align/1guxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14448/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.958984 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1guxB id: 1guxB alignment found: /projects/compbio/experiments/models.97/pdb/1g/1guxB/nostruct-align/1guxB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1guxB/nostruct-align/1guxB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1guxB/nostruct-align/1guxB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7552/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.196899 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gvp id: 1gvp alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gvp/nostruct-align/1gvp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gvp/nostruct-align/1gvp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gvp/nostruct-align/1gvp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8180/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.674927 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gw4 id: 1gw4 alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gw4/nostruct-align/1gw4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gw4/nostruct-align/1gw4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gw4/nostruct-align/1gw4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31013/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.115845 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gya id: 1gya alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gya/nostruct-align/1gya.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gya/nostruct-align/1gya.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gya/nostruct-align/1gya.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8589/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.026855 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gyfA id: 1gyfA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gyfA/nostruct-align/1gyfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gyfA/nostruct-align/1gyfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gyfA/nostruct-align/1gyfA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15273/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.493896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gylA id: 1gylA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gylA/nostruct-align/1gylA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gylA/nostruct-align/1gylA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gylA/nostruct-align/1gylA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18024/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.594849 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1gypA id: 1gypA alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gypA/nostruct-align/1gypA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gypA/nostruct-align/1gypA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1g/1gypA/nostruct-align/1gypA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21552/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.235962 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1h2aS id: 1h2aS alignment found: /projects/compbio/experiments/models.97/pdb/1h/1h2aS/nostruct-align/1h2aS.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1h2aS/nostruct-align/1h2aS.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1h2aS/nostruct-align/1h2aS.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8370/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.882935 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1h2rL id: 1h2rL alignment found: /projects/compbio/experiments/models.97/pdb/1h/1h2rL/nostruct-align/1h2rL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1h2rL/nostruct-align/1h2rL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1h2rL/nostruct-align/1h2rL.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2258/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.466919 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ha1 id: 1ha1 alignment found: /projects/compbio/experiments/models.97/pdb/1h/1ha1/nostruct-align/1ha1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1ha1/nostruct-align/1ha1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1ha1/nostruct-align/1ha1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29125/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.998901 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1han id: 1han alignment found: /projects/compbio/experiments/models.97/pdb/1h/1han/nostruct-align/1han.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1han/nostruct-align/1han.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1han/nostruct-align/1han.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2009/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.275879 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1han_1 id: 1han_1 alignment found: /projects/compbio4/experiments/models.97/domains/1h/1han_1/nostruct-align/1han_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1han_1/nostruct-align/1han_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1h/1han_1/nostruct-align/1han_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16036/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.296875 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1han_2 id: 1han_2 alignment found: /projects/compbio4/experiments/models.97/domains/1h/1han_2/nostruct-align/1han_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1han_2/nostruct-align/1han_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1h/1han_2/nostruct-align/1han_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7225/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.299927 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1har id: 1har alignment found: /projects/compbio/experiments/models.97/pdb/1h/1har/nostruct-align/1har.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1har/nostruct-align/1har.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1har/nostruct-align/1har.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20542/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.269897 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1havA id: 1havA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1havA/nostruct-align/1havA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1havA/nostruct-align/1havA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1havA/nostruct-align/1havA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7700/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.335938 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hbg id: 1hbg alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hbg/nostruct-align/1hbg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hbg/nostruct-align/1hbg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hbg/nostruct-align/1hbg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26954/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.503906 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hbp id: 1hbp alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hbp/nostruct-align/1hbp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hbp/nostruct-align/1hbp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hbp/nostruct-align/1hbp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18611/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.929932 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hbq id: 1hbq alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hbq/nostruct-align/1hbq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hbq/nostruct-align/1hbq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hbq/nostruct-align/1hbq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9203/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.598877 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hbt_1l1 id: 1hbt_1l1 alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hbt_1l1/nostruct-align/1hbt_1l1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hbt_1l1/nostruct-align/1hbt_1l1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1h/1hbt_1l1/nostruct-align/1hbt_1l1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3002/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.209839 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hc2_1 id: 1hc2_1 alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hc2_1/nostruct-align/1hc2_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hc2_1/nostruct-align/1hc2_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1h/1hc2_1/nostruct-align/1hc2_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22076/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.721924 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hc2_2 id: 1hc2_2 alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hc2_2/nostruct-align/1hc2_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hc2_2/nostruct-align/1hc2_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1h/1hc2_2/nostruct-align/1hc2_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19876/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.971924 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hcb id: 1hcb alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hcb/nostruct-align/1hcb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hcb/nostruct-align/1hcb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hcb/nostruct-align/1hcb.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12384/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.704956 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hcc id: 1hcc alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hcc/nostruct-align/1hcc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hcc/nostruct-align/1hcc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hcc/nostruct-align/1hcc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26057/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.706909 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hcd id: 1hcd alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hcd/nostruct-align/1hcd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hcd/nostruct-align/1hcd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hcd/nostruct-align/1hcd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-590/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.534912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hce id: 1hce alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hce/nostruct-align/1hce.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hce/nostruct-align/1hce.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hce/nostruct-align/1hce.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6071/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.534912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hcgB id: 1hcgB alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hcgB/nostruct-align/1hcgB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hcgB/nostruct-align/1hcgB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hcgB/nostruct-align/1hcgB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13189/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.750854 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hcl id: 1hcl alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hcl/nostruct-align/1hcl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hcl/nostruct-align/1hcl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hcl/nostruct-align/1hcl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2658/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.612915 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hcnA id: 1hcnA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hcnA/nostruct-align/1hcnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hcnA/nostruct-align/1hcnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hcnA/nostruct-align/1hcnA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9647/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.937866 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hcnB id: 1hcnB alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hcnB/nostruct-align/1hcnB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hcnB/nostruct-align/1hcnB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hcnB/nostruct-align/1hcnB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8311/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.416016 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hcqA id: 1hcqA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hcqA/nostruct-align/1hcqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hcqA/nostruct-align/1hcqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hcqA/nostruct-align/1hcqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8167/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.195923 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hcrA id: 1hcrA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hcrA/nostruct-align/1hcrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hcrA/nostruct-align/1hcrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hcrA/nostruct-align/1hcrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16334/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.219971 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hcz id: 1hcz alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hcz/nostruct-align/1hcz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hcz/nostruct-align/1hcz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hcz/nostruct-align/1hcz.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27179/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.570923 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hdcA id: 1hdcA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hdcA/nostruct-align/1hdcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hdcA/nostruct-align/1hdcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hdcA/nostruct-align/1hdcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31069/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.195923 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hdmB id: 1hdmB alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hdmB/nostruct-align/1hdmB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hdmB/nostruct-align/1hdmB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hdmB/nostruct-align/1hdmB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27316/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.158936 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hdp id: 1hdp alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hdp/nostruct-align/1hdp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hdp/nostruct-align/1hdp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hdp/nostruct-align/1hdp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21713/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.717896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1heiA id: 1heiA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1heiA/nostruct-align/1heiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1heiA/nostruct-align/1heiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1heiA/nostruct-align/1heiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24996/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.324951 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hev id: 1hev alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hev/nostruct-align/1hev.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hev/nostruct-align/1hev.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hev/nostruct-align/1hev.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21376/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.130859 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hfc id: 1hfc alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hfc/nostruct-align/1hfc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hfc/nostruct-align/1hfc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hfc/nostruct-align/1hfc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20040/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.855957 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hfeL id: 1hfeL alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hfeL/nostruct-align/1hfeL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hfeL/nostruct-align/1hfeL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hfeL/nostruct-align/1hfeL.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30871/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.392822 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hfeS id: 1hfeS alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hfeS/nostruct-align/1hfeS.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hfeS/nostruct-align/1hfeS.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hfeS/nostruct-align/1hfeS.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11502/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.564819 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hfh id: 1hfh alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hfh/nostruct-align/1hfh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hfh/nostruct-align/1hfh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hfh/nostruct-align/1hfh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25967/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.051880 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hfi id: 1hfi alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hfi/nostruct-align/1hfi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hfi/nostruct-align/1hfi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hfi/nostruct-align/1hfi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20636/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.425903 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hgeA id: 1hgeA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hgeA/nostruct-align/1hgeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hgeA/nostruct-align/1hgeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hgeA/nostruct-align/1hgeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8035/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.491943 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hgeB id: 1hgeB alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hgeB/nostruct-align/1hgeB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hgeB/nostruct-align/1hgeB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hgeB/nostruct-align/1hgeB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-931/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.219971 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hgxA id: 1hgxA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hgxA/nostruct-align/1hgxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hgxA/nostruct-align/1hgxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hgxA/nostruct-align/1hgxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15926/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.473877 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hilB id: 1hilB alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hilB/nostruct-align/1hilB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hilB/nostruct-align/1hilB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hilB/nostruct-align/1hilB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11153/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.321899 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hiwA id: 1hiwA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hiwA/nostruct-align/1hiwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hiwA/nostruct-align/1hiwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hiwA/nostruct-align/1hiwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25684/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.467896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hjp id: 1hjp alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hjp/nostruct-align/1hjp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hjp/nostruct-align/1hjp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hjp/nostruct-align/1hjp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19638/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.926880 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hjrA id: 1hjrA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hjrA/nostruct-align/1hjrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hjrA/nostruct-align/1hjrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hjrA/nostruct-align/1hjrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4320/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.370850 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hka id: 1hka alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hka/nostruct-align/1hka.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hka/nostruct-align/1hka.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hka/nostruct-align/1hka.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8146/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.987915 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hkbA id: 1hkbA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hkbA/nostruct-align/1hkbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hkbA/nostruct-align/1hkbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hkbA/nostruct-align/1hkbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19937/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.566895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hkcA id: 1hkcA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hkcA/nostruct-align/1hkcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hkcA/nostruct-align/1hkcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hkcA/nostruct-align/1hkcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13968/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.564941 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hlb id: 1hlb alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hlb/nostruct-align/1hlb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hlb/nostruct-align/1hlb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hlb/nostruct-align/1hlb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29046/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.144897 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hleA id: 1hleA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hleA/nostruct-align/1hleA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hleA/nostruct-align/1hleA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hleA/nostruct-align/1hleA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27919/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.868896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hleB id: 1hleB alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hleB/nostruct-align/1hleB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hleB/nostruct-align/1hleB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hleB/nostruct-align/1hleB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8478/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.025879 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hle_1a1 id: 1hle_1a1 alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hle_1a1/nostruct-align/1hle_1a1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hle_1a1/nostruct-align/1hle_1a1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1h/1hle_1a1/nostruct-align/1hle_1a1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19494/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.380859 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hlgA id: 1hlgA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hlgA/nostruct-align/1hlgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hlgA/nostruct-align/1hlgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hlgA/nostruct-align/1hlgA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2225/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.058960 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hlpA_1 id: 1hlpA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hlpA_1/nostruct-align/1hlpA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hlpA_1/nostruct-align/1hlpA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1h/1hlpA_1/nostruct-align/1hlpA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3396/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.156860 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hlpA_2 id: 1hlpA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hlpA_2/nostruct-align/1hlpA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hlpA_2/nostruct-align/1hlpA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1h/1hlpA_2/nostruct-align/1hlpA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14855/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.509888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hma id: 1hma alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hma/nostruct-align/1hma.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hma/nostruct-align/1hma.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hma/nostruct-align/1hma.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13804/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.326782 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hmcA id: 1hmcA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hmcA/nostruct-align/1hmcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hmcA/nostruct-align/1hmcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hmcA/nostruct-align/1hmcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5553/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.893921 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hmcB id: 1hmcB alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hmcB/nostruct-align/1hmcB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hmcB/nostruct-align/1hmcB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hmcB/nostruct-align/1hmcB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15638/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.891846 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hml id: 1hml alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hml/nostruct-align/1hml.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hml/nostruct-align/1hml.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hml/nostruct-align/1hml.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15767/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.534912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hmpA id: 1hmpA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hmpA/nostruct-align/1hmpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hmpA/nostruct-align/1hmpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hmpA/nostruct-align/1hmpA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-24360/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.288940 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hms id: 1hms alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hms/nostruct-align/1hms.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hms/nostruct-align/1hms.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hms/nostruct-align/1hms.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-27231/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.647949 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hmt id: 1hmt alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hmt/nostruct-align/1hmt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hmt/nostruct-align/1hmt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hmt/nostruct-align/1hmt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18799/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.553833 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hmy id: 1hmy alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hmy/nostruct-align/1hmy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hmy/nostruct-align/1hmy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hmy/nostruct-align/1hmy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21224/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.947876 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hnf id: 1hnf alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hnf/nostruct-align/1hnf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hnf/nostruct-align/1hnf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hnf/nostruct-align/1hnf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12961/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.337891 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hnr id: 1hnr alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hnr/nostruct-align/1hnr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hnr/nostruct-align/1hnr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hnr/nostruct-align/1hnr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11144/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.735962 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hoe id: 1hoe alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hoe/nostruct-align/1hoe.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hoe/nostruct-align/1hoe.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hoe/nostruct-align/1hoe.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25128/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.321899 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hp8 id: 1hp8 alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hp8/nostruct-align/1hp8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hp8/nostruct-align/1hp8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hp8/nostruct-align/1hp8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3435/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.287842 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hpgA id: 1hpgA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hpgA/nostruct-align/1hpgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hpgA/nostruct-align/1hpgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hpgA/nostruct-align/1hpgA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22252/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.739868 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hph id: 1hph alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hph/nostruct-align/1hph.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hph/nostruct-align/1hph.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hph/nostruct-align/1hph.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-117/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.568970 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hpi id: 1hpi alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hpi/nostruct-align/1hpi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hpi/nostruct-align/1hpi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hpi/nostruct-align/1hpi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15477/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.409912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hplA_1 id: 1hplA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hplA_1/nostruct-align/1hplA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hplA_1/nostruct-align/1hplA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1h/1hplA_1/nostruct-align/1hplA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3888/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.846924 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hplA_2 id: 1hplA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hplA_2/nostruct-align/1hplA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hplA_2/nostruct-align/1hplA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1h/1hplA_2/nostruct-align/1hplA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26546/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.287964 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hpm_1 id: 1hpm_1 alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hpm_1/nostruct-align/1hpm_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hpm_1/nostruct-align/1hpm_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1h/1hpm_1/nostruct-align/1hpm_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17095/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.540894 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hpm_2 id: 1hpm_2 alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hpm_2/nostruct-align/1hpm_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hpm_2/nostruct-align/1hpm_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1h/1hpm_2/nostruct-align/1hpm_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26980/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.601929 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hpy id: 1hpy alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hpy/nostruct-align/1hpy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hpy/nostruct-align/1hpy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hpy/nostruct-align/1hpy.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29177/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.440918 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hqi id: 1hqi alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hqi/nostruct-align/1hqi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hqi/nostruct-align/1hqi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hqi/nostruct-align/1hqi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10878/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.542847 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hra id: 1hra alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hra/nostruct-align/1hra.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hra/nostruct-align/1hra.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hra/nostruct-align/1hra.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17422/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.214966 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hrdA id: 1hrdA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hrdA/nostruct-align/1hrdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hrdA/nostruct-align/1hrdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hrdA/nostruct-align/1hrdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32199/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.386963 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hre id: 1hre alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hre/nostruct-align/1hre.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hre/nostruct-align/1hre.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hre/nostruct-align/1hre.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19034/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.149902 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hrq id: 1hrq alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hrq/nostruct-align/1hrq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hrq/nostruct-align/1hrq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hrq/nostruct-align/1hrq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28909/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.065918 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hryA id: 1hryA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hryA/nostruct-align/1hryA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hryA/nostruct-align/1hryA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hryA/nostruct-align/1hryA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29580/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.315918 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hrzA id: 1hrzA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hrzA/nostruct-align/1hrzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hrzA/nostruct-align/1hrzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hrzA/nostruct-align/1hrzA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18804/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.240845 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hsbA id: 1hsbA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hsbA/nostruct-align/1hsbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hsbA/nostruct-align/1hsbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hsbA/nostruct-align/1hsbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27912/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.987915 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hsm id: 1hsm alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hsm/nostruct-align/1hsm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hsm/nostruct-align/1hsm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hsm/nostruct-align/1hsm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18768/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.505859 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hsq id: 1hsq alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hsq/nostruct-align/1hsq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hsq/nostruct-align/1hsq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hsq/nostruct-align/1hsq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28460/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.329956 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hssA id: 1hssA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hssA/nostruct-align/1hssA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hssA/nostruct-align/1hssA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hssA/nostruct-align/1hssA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10881/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.052856 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hstA id: 1hstA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hstA/nostruct-align/1hstA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hstA/nostruct-align/1hstA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hstA/nostruct-align/1hstA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32411/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.960938 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hta id: 1hta alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hta/nostruct-align/1hta.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hta/nostruct-align/1hta.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hta/nostruct-align/1hta.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21404/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.660889 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hth id: 1hth alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hth/nostruct-align/1hth.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hth/nostruct-align/1hth.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hth/nostruct-align/1hth.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23013/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.465942 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1htmB id: 1htmB alignment found: /projects/compbio/experiments/models.97/pdb/1h/1htmB/nostruct-align/1htmB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1htmB/nostruct-align/1htmB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1htmB/nostruct-align/1htmB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23752/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.498901 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1htn id: 1htn alignment found: /projects/compbio/experiments/models.97/pdb/1h/1htn/nostruct-align/1htn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1htn/nostruct-align/1htn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1htn/nostruct-align/1htn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22147/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.005859 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1htp id: 1htp alignment found: /projects/compbio/experiments/models.97/pdb/1h/1htp/nostruct-align/1htp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1htp/nostruct-align/1htp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1htp/nostruct-align/1htp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30090/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.919922 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1htrB id: 1htrB alignment found: /projects/compbio/experiments/models.97/pdb/1h/1htrB/nostruct-align/1htrB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1htrB/nostruct-align/1htrB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1htrB/nostruct-align/1htrB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25271/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.621826 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1htrP id: 1htrP alignment found: /projects/compbio/experiments/models.97/pdb/1h/1htrP/nostruct-align/1htrP.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1htrP/nostruct-align/1htrP.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1htrP/nostruct-align/1htrP.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23664/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.984863 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1htr_1p1 id: 1htr_1p1 alignment found: /projects/compbio4/experiments/models.97/domains/1h/1htr_1p1/nostruct-align/1htr_1p1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1htr_1p1/nostruct-align/1htr_1p1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1h/1htr_1p1/nostruct-align/1htr_1p1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19787/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.832886 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hucA id: 1hucA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hucA/nostruct-align/1hucA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hucA/nostruct-align/1hucA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hucA/nostruct-align/1hucA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6118/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.714844 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hueA id: 1hueA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hueA/nostruct-align/1hueA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hueA/nostruct-align/1hueA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hueA/nostruct-align/1hueA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20035/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.918945 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hulA id: 1hulA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hulA/nostruct-align/1hulA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hulA/nostruct-align/1hulA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hulA/nostruct-align/1hulA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-282/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.088989 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1humA id: 1humA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1humA/nostruct-align/1humA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1humA/nostruct-align/1humA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1humA/nostruct-align/1humA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14391/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.931885 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hurA id: 1hurA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hurA/nostruct-align/1hurA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hurA/nostruct-align/1hurA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hurA/nostruct-align/1hurA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20682/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.050903 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1huuA id: 1huuA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1huuA/nostruct-align/1huuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1huuA/nostruct-align/1huuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1huuA/nostruct-align/1huuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3588/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.028931 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1huw id: 1huw alignment found: /projects/compbio/experiments/models.97/pdb/1h/1huw/nostruct-align/1huw.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1huw/nostruct-align/1huw.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1huw/nostruct-align/1huw.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28339/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.343872 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hvc id: 1hvc alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hvc/nostruct-align/1hvc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hvc/nostruct-align/1hvc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hvc/nostruct-align/1hvc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30998/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.725952 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hvd id: 1hvd alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hvd/nostruct-align/1hvd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hvd/nostruct-align/1hvd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hvd/nostruct-align/1hvd.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-27124/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.240845 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hwtC id: 1hwtC alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hwtC/nostruct-align/1hwtC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hwtC/nostruct-align/1hwtC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hwtC/nostruct-align/1hwtC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15366/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.764893 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hxn id: 1hxn alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hxn/nostruct-align/1hxn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hxn/nostruct-align/1hxn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hxn/nostruct-align/1hxn.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23394/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.727905 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hyhA id: 1hyhA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hyhA/nostruct-align/1hyhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hyhA/nostruct-align/1hyhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hyhA/nostruct-align/1hyhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26002/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.425903 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hyhA_1 id: 1hyhA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hyhA_1/nostruct-align/1hyhA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hyhA_1/nostruct-align/1hyhA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1h/1hyhA_1/nostruct-align/1hyhA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24142/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.654907 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hyhA_2 id: 1hyhA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hyhA_2/nostruct-align/1hyhA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hyhA_2/nostruct-align/1hyhA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1h/1hyhA_2/nostruct-align/1hyhA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6857/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.562866 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hylA id: 1hylA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hylA/nostruct-align/1hylA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hylA/nostruct-align/1hylA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hylA/nostruct-align/1hylA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-10790/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.912964 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hymA id: 1hymA alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hymA/nostruct-align/1hymA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hymA/nostruct-align/1hymA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hymA/nostruct-align/1hymA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26850/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.305786 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hyp id: 1hyp alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hyp/nostruct-align/1hyp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hyp/nostruct-align/1hyp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hyp/nostruct-align/1hyp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21020/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.483887 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1hyt id: 1hyt alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hyt/nostruct-align/1hyt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hyt/nostruct-align/1hyt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1h/1hyt/nostruct-align/1hyt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5975/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.869873 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1i16 id: 1i16 alignment found: /projects/compbio/experiments/models.97/pdb/1i/1i16/nostruct-align/1i16.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1i16/nostruct-align/1i16.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1i16/nostruct-align/1i16.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23163/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.032959 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1i1b id: 1i1b alignment found: /projects/compbio/experiments/models.97/pdb/1i/1i1b/nostruct-align/1i1b.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1i1b/nostruct-align/1i1b.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1i1b/nostruct-align/1i1b.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-21163/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.717896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1iab id: 1iab alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iab/nostruct-align/1iab.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iab/nostruct-align/1iab.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iab/nostruct-align/1iab.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32374/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.776978 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1iae id: 1iae alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iae/nostruct-align/1iae.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iae/nostruct-align/1iae.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iae/nostruct-align/1iae.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27168/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.746826 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1iakA id: 1iakA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iakA/nostruct-align/1iakA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iakA/nostruct-align/1iakA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iakA/nostruct-align/1iakA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29981/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.240967 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1iakB id: 1iakB alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iakB/nostruct-align/1iakB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iakB/nostruct-align/1iakB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iakB/nostruct-align/1iakB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11742/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.866943 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1iarB id: 1iarB alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iarB/nostruct-align/1iarB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iarB/nostruct-align/1iarB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iarB/nostruct-align/1iarB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15552/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.520874 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1iba id: 1iba alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iba/nostruct-align/1iba.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iba/nostruct-align/1iba.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iba/nostruct-align/1iba.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25897/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.205933 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ibcA id: 1ibcA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ibcA/nostruct-align/1ibcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ibcA/nostruct-align/1ibcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ibcA/nostruct-align/1ibcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19850/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.211914 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ibcB id: 1ibcB alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ibcB/nostruct-align/1ibcB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ibcB/nostruct-align/1ibcB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ibcB/nostruct-align/1ibcB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31654/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.208984 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ica id: 1ica alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ica/nostruct-align/1ica.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ica/nostruct-align/1ica.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ica/nostruct-align/1ica.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30338/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.439941 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ice_1a1 id: 1ice_1a1 alignment found: /projects/compbio4/experiments/models.97/domains/1i/1ice_1a1/nostruct-align/1ice_1a1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1i/1ice_1a1/nostruct-align/1ice_1a1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1i/1ice_1a1/nostruct-align/1ice_1a1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26797/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.231812 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1icfB id: 1icfB alignment found: /projects/compbio/experiments/models.97/pdb/1i/1icfB/nostruct-align/1icfB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1icfB/nostruct-align/1icfB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1icfB/nostruct-align/1icfB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7112/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.687866 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1icfI id: 1icfI alignment found: /projects/compbio/experiments/models.97/pdb/1i/1icfI/nostruct-align/1icfI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1icfI/nostruct-align/1icfI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1icfI/nostruct-align/1icfI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32329/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.506836 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1icjA id: 1icjA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1icjA/nostruct-align/1icjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1icjA/nostruct-align/1icjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1icjA/nostruct-align/1icjA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2605/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.765869 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1idaA id: 1idaA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1idaA/nostruct-align/1idaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1idaA/nostruct-align/1idaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1idaA/nostruct-align/1idaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28757/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.494995 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1idk id: 1idk alignment found: /projects/compbio/experiments/models.97/pdb/1i/1idk/nostruct-align/1idk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1idk/nostruct-align/1idk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1idk/nostruct-align/1idk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3581/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.942871 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1idm id: 1idm alignment found: /projects/compbio/experiments/models.97/pdb/1i/1idm/nostruct-align/1idm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1idm/nostruct-align/1idm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1idm/nostruct-align/1idm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5960/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.969849 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ido id: 1ido alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ido/nostruct-align/1ido.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ido/nostruct-align/1ido.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ido/nostruct-align/1ido.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15644/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.036865 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ieaA id: 1ieaA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ieaA/nostruct-align/1ieaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ieaA/nostruct-align/1ieaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ieaA/nostruct-align/1ieaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-728/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.515869 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1if1A id: 1if1A alignment found: /projects/compbio/experiments/models.97/pdb/1i/1if1A/nostruct-align/1if1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1if1A/nostruct-align/1if1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1if1A/nostruct-align/1if1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-293/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.179932 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ifa id: 1ifa alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ifa/nostruct-align/1ifa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ifa/nostruct-align/1ifa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ifa/nostruct-align/1ifa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31257/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.775879 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ifc id: 1ifc alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ifc/nostruct-align/1ifc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ifc/nostruct-align/1ifc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ifc/nostruct-align/1ifc.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10482/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.475952 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ifi id: 1ifi alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ifi/nostruct-align/1ifi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ifi/nostruct-align/1ifi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ifi/nostruct-align/1ifi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25737/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.902954 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ifj id: 1ifj alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ifj/nostruct-align/1ifj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ifj/nostruct-align/1ifj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ifj/nostruct-align/1ifj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21992/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.902954 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ifl id: 1ifl alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ifl/nostruct-align/1ifl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ifl/nostruct-align/1ifl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ifl/nostruct-align/1ifl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27727/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.970825 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ifm id: 1ifm alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ifm/nostruct-align/1ifm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ifm/nostruct-align/1ifm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ifm/nostruct-align/1ifm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26854/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.226929 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ifp id: 1ifp alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ifp/nostruct-align/1ifp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ifp/nostruct-align/1ifp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ifp/nostruct-align/1ifp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28853/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.190796 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1igd id: 1igd alignment found: /projects/compbio/experiments/models.97/pdb/1i/1igd/nostruct-align/1igd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1igd/nostruct-align/1igd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1igd/nostruct-align/1igd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6389/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.809937 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1igl id: 1igl alignment found: /projects/compbio/experiments/models.97/pdb/1i/1igl/nostruct-align/1igl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1igl/nostruct-align/1igl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1igl/nostruct-align/1igl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28748/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.216797 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ignA id: 1ignA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ignA/nostruct-align/1ignA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ignA/nostruct-align/1ignA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ignA/nostruct-align/1ignA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18172/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.023926 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1igrA id: 1igrA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1igrA/nostruct-align/1igrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1igrA/nostruct-align/1igrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1igrA/nostruct-align/1igrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27666/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.946899 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1igs id: 1igs alignment found: /projects/compbio/experiments/models.97/pdb/1i/1igs/nostruct-align/1igs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1igs/nostruct-align/1igs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1igs/nostruct-align/1igs.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20208/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.673828 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1igtB id: 1igtB alignment found: /projects/compbio/experiments/models.97/pdb/1i/1igtB/nostruct-align/1igtB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1igtB/nostruct-align/1igtB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1igtB/nostruct-align/1igtB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15275/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.637817 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ihp id: 1ihp alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ihp/nostruct-align/1ihp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ihp/nostruct-align/1ihp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ihp/nostruct-align/1ihp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28899/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.158936 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ihsI id: 1ihsI alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ihsI/nostruct-align/1ihsI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ihsI/nostruct-align/1ihsI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ihsI/nostruct-align/1ihsI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18415/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.765869 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ihvA id: 1ihvA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ihvA/nostruct-align/1ihvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ihvA/nostruct-align/1ihvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ihvA/nostruct-align/1ihvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10945/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.078979 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1iibA id: 1iibA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iibA/nostruct-align/1iibA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iibA/nostruct-align/1iibA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iibA/nostruct-align/1iibA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24109/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.492920 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1iieA id: 1iieA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iieA/nostruct-align/1iieA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iieA/nostruct-align/1iieA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iieA/nostruct-align/1iieA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29529/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.816895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1iknA id: 1iknA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iknA/nostruct-align/1iknA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iknA/nostruct-align/1iknA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iknA/nostruct-align/1iknA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29703/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.704834 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1iknD id: 1iknD alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iknD/nostruct-align/1iknD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iknD/nostruct-align/1iknD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iknD/nostruct-align/1iknD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24833/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.299927 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ile id: 1ile alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ile/nostruct-align/1ile.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ile/nostruct-align/1ile.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ile/nostruct-align/1ile.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10961/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.739868 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ilk id: 1ilk alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ilk/nostruct-align/1ilk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ilk/nostruct-align/1ilk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ilk/nostruct-align/1ilk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10838/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.943970 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ilr1 id: 1ilr1 alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ilr1/nostruct-align/1ilr1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ilr1/nostruct-align/1ilr1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ilr1/nostruct-align/1ilr1.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-27321/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.390869 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1imbA id: 1imbA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1imbA/nostruct-align/1imbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1imbA/nostruct-align/1imbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1imbA/nostruct-align/1imbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17342/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.215942 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1imdA id: 1imdA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1imdA/nostruct-align/1imdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1imdA/nostruct-align/1imdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1imdA/nostruct-align/1imdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20291/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.776978 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1iml id: 1iml alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iml/nostruct-align/1iml.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iml/nostruct-align/1iml.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iml/nostruct-align/1iml.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7710/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.606934 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1imt id: 1imt alignment found: /projects/compbio/experiments/models.97/pdb/1i/1imt/nostruct-align/1imt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1imt/nostruct-align/1imt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1imt/nostruct-align/1imt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11017/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.903931 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1inp id: 1inp alignment found: /projects/compbio/experiments/models.97/pdb/1i/1inp/nostruct-align/1inp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1inp/nostruct-align/1inp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1inp/nostruct-align/1inp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23928/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.159912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ioj id: 1ioj alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ioj/nostruct-align/1ioj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ioj/nostruct-align/1ioj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ioj/nostruct-align/1ioj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26822/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.478882 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1iow id: 1iow alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iow/nostruct-align/1iow.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iow/nostruct-align/1iow.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iow/nostruct-align/1iow.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1069/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.764893 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ipd id: 1ipd alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ipd/nostruct-align/1ipd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ipd/nostruct-align/1ipd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ipd/nostruct-align/1ipd.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5292/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.969971 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ipwA id: 1ipwA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ipwA/nostruct-align/1ipwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ipwA/nostruct-align/1ipwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ipwA/nostruct-align/1ipwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19442/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.469971 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ir3A id: 1ir3A alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ir3A/nostruct-align/1ir3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ir3A/nostruct-align/1ir3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ir3A/nostruct-align/1ir3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11760/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.581909 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1irk id: 1irk alignment found: /projects/compbio/experiments/models.97/pdb/1i/1irk/nostruct-align/1irk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1irk/nostruct-align/1irk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1irk/nostruct-align/1irk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12935/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.015869 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1irl id: 1irl alignment found: /projects/compbio/experiments/models.97/pdb/1i/1irl/nostruct-align/1irl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1irl/nostruct-align/1irl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1irl/nostruct-align/1irl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26329/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.828979 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1iro id: 1iro alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iro/nostruct-align/1iro.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iro/nostruct-align/1iro.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iro/nostruct-align/1iro.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15358/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.546875 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1irp id: 1irp alignment found: /projects/compbio/experiments/models.97/pdb/1i/1irp/nostruct-align/1irp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1irp/nostruct-align/1irp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1irp/nostruct-align/1irp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11262/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.333862 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1irsA id: 1irsA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1irsA/nostruct-align/1irsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1irsA/nostruct-align/1irsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1irsA/nostruct-align/1irsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4280/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.690918 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1iscA id: 1iscA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iscA/nostruct-align/1iscA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iscA/nostruct-align/1iscA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iscA/nostruct-align/1iscA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6755/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.531860 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1iso id: 1iso alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iso/nostruct-align/1iso.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iso/nostruct-align/1iso.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iso/nostruct-align/1iso.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19355/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.727905 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1isuA id: 1isuA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1isuA/nostruct-align/1isuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1isuA/nostruct-align/1isuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1isuA/nostruct-align/1isuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28191/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.073975 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1itbB id: 1itbB alignment found: /projects/compbio/experiments/models.97/pdb/1i/1itbB/nostruct-align/1itbB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1itbB/nostruct-align/1itbB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1itbB/nostruct-align/1itbB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22981/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -19.688843 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1itf id: 1itf alignment found: /projects/compbio/experiments/models.97/pdb/1i/1itf/nostruct-align/1itf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1itf/nostruct-align/1itf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1itf/nostruct-align/1itf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16900/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.042847 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1itg id: 1itg alignment found: /projects/compbio/experiments/models.97/pdb/1i/1itg/nostruct-align/1itg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1itg/nostruct-align/1itg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1itg/nostruct-align/1itg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21631/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.020874 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ithA id: 1ithA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ithA/nostruct-align/1ithA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ithA/nostruct-align/1ithA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ithA/nostruct-align/1ithA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23119/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.297852 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1itm id: 1itm alignment found: /projects/compbio/experiments/models.97/pdb/1i/1itm/nostruct-align/1itm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1itm/nostruct-align/1itm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1itm/nostruct-align/1itm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1483/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.064941 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1iuz id: 1iuz alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iuz/nostruct-align/1iuz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iuz/nostruct-align/1iuz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iuz/nostruct-align/1iuz.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27141/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.454834 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1iva id: 1iva alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iva/nostruct-align/1iva.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iva/nostruct-align/1iva.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iva/nostruct-align/1iva.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/experiments/models.97/pdb/1i/1iva/nostruct-align/1iva.t99.a2m.gz SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.403931 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ivyA id: 1ivyA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ivyA/nostruct-align/1ivyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ivyA/nostruct-align/1ivyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ivyA/nostruct-align/1ivyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29124/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.145874 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ixa id: 1ixa alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ixa/nostruct-align/1ixa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ixa/nostruct-align/1ixa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ixa/nostruct-align/1ixa.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30407/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.846924 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ixh id: 1ixh alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ixh/nostruct-align/1ixh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ixh/nostruct-align/1ixh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ixh/nostruct-align/1ixh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30536/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.422852 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ixmA id: 1ixmA alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ixmA/nostruct-align/1ixmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ixmA/nostruct-align/1ixmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ixmA/nostruct-align/1ixmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1500/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.812866 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ixmB id: 1ixmB alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ixmB/nostruct-align/1ixmB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ixmB/nostruct-align/1ixmB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ixmB/nostruct-align/1ixmB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29953/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.881836 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ixxB id: 1ixxB alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ixxB/nostruct-align/1ixxB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ixxB/nostruct-align/1ixxB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1ixxB/nostruct-align/1ixxB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23149/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.724854 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1iyu id: 1iyu alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iyu/nostruct-align/1iyu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iyu/nostruct-align/1iyu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1i/1iyu/nostruct-align/1iyu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20247/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.778931 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1jacA id: 1jacA alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jacA/nostruct-align/1jacA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jacA/nostruct-align/1jacA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jacA/nostruct-align/1jacA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27657/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.868896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1jcv id: 1jcv alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jcv/nostruct-align/1jcv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jcv/nostruct-align/1jcv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jcv/nostruct-align/1jcv.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30186/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.203857 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1jdc id: 1jdc alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jdc/nostruct-align/1jdc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jdc/nostruct-align/1jdc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jdc/nostruct-align/1jdc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-998/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.821899 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1jdw id: 1jdw alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jdw/nostruct-align/1jdw.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jdw/nostruct-align/1jdw.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jdw/nostruct-align/1jdw.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13085/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.360840 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1jenA id: 1jenA alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jenA/nostruct-align/1jenA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jenA/nostruct-align/1jenA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jenA/nostruct-align/1jenA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17021/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.469971 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1jenB id: 1jenB alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jenB/nostruct-align/1jenB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jenB/nostruct-align/1jenB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jenB/nostruct-align/1jenB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19447/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.267944 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1jer id: 1jer alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jer/nostruct-align/1jer.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jer/nostruct-align/1jer.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jer/nostruct-align/1jer.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9387/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.392944 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1jetA id: 1jetA alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jetA/nostruct-align/1jetA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jetA/nostruct-align/1jetA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jetA/nostruct-align/1jetA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7803/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.332886 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1jevA id: 1jevA alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jevA/nostruct-align/1jevA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jevA/nostruct-align/1jevA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jevA/nostruct-align/1jevA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12877/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.316895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1jfrA id: 1jfrA alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jfrA/nostruct-align/1jfrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jfrA/nostruct-align/1jfrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jfrA/nostruct-align/1jfrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17579/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.406982 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1jhgA id: 1jhgA alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jhgA/nostruct-align/1jhgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jhgA/nostruct-align/1jhgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jhgA/nostruct-align/1jhgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5117/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.491943 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1jkmA id: 1jkmA alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jkmA/nostruct-align/1jkmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jkmA/nostruct-align/1jkmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jkmA/nostruct-align/1jkmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26657/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.855835 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1jkmB id: 1jkmB alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jkmB/nostruct-align/1jkmB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jkmB/nostruct-align/1jkmB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jkmB/nostruct-align/1jkmB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16336/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.369873 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1jkw id: 1jkw alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jkw/nostruct-align/1jkw.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jkw/nostruct-align/1jkw.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jkw/nostruct-align/1jkw.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10873/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.926880 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1jli id: 1jli alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jli/nostruct-align/1jli.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jli/nostruct-align/1jli.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jli/nostruct-align/1jli.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28142/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.822876 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1jlyA id: 1jlyA alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jlyA/nostruct-align/1jlyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jlyA/nostruct-align/1jlyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jlyA/nostruct-align/1jlyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10854/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.182983 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1jmcA id: 1jmcA alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jmcA/nostruct-align/1jmcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jmcA/nostruct-align/1jmcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jmcA/nostruct-align/1jmcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20969/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.658936 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1joa id: 1joa alignment found: /projects/compbio/experiments/models.97/pdb/1j/1joa/nostruct-align/1joa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1joa/nostruct-align/1joa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1joa/nostruct-align/1joa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5657/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.222900 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1jotA id: 1jotA alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jotA/nostruct-align/1jotA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jotA/nostruct-align/1jotA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jotA/nostruct-align/1jotA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15536/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.607910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1joyA id: 1joyA alignment found: /projects/compbio/experiments/models.97/pdb/1j/1joyA/nostruct-align/1joyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1joyA/nostruct-align/1joyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1joyA/nostruct-align/1joyA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11280/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.103882 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1jpc id: 1jpc alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jpc/nostruct-align/1jpc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jpc/nostruct-align/1jpc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jpc/nostruct-align/1jpc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12411/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.508911 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1jrhI id: 1jrhI alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jrhI/nostruct-align/1jrhI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jrhI/nostruct-align/1jrhI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jrhI/nostruct-align/1jrhI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17928/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.359863 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1jsf id: 1jsf alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jsf/nostruct-align/1jsf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jsf/nostruct-align/1jsf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jsf/nostruct-align/1jsf.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16614/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.295898 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1jsuC id: 1jsuC alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jsuC/nostruct-align/1jsuC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jsuC/nostruct-align/1jsuC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jsuC/nostruct-align/1jsuC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1798/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.818848 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1juk id: 1juk alignment found: /projects/compbio/experiments/models.97/pdb/1j/1juk/nostruct-align/1juk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1juk/nostruct-align/1juk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1juk/nostruct-align/1juk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4768/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.880859 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1junA id: 1junA alignment found: /projects/compbio/experiments/models.97/pdb/1j/1junA/nostruct-align/1junA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1junA/nostruct-align/1junA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1junA/nostruct-align/1junA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12474/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.147949 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1jvr id: 1jvr alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jvr/nostruct-align/1jvr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jvr/nostruct-align/1jvr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jvr/nostruct-align/1jvr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23546/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.134888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1jwe id: 1jwe alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jwe/nostruct-align/1jwe.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jwe/nostruct-align/1jwe.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jwe/nostruct-align/1jwe.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8460/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.036865 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1jxpA id: 1jxpA alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jxpA/nostruct-align/1jxpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jxpA/nostruct-align/1jxpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1j/1jxpA/nostruct-align/1jxpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27033/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.537842 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1k89 id: 1k89 alignment found: /projects/compbio/experiments/models.97/pdb/1k/1k89/nostruct-align/1k89.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1k89/nostruct-align/1k89.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1k89/nostruct-align/1k89.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30752/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.426880 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1kal id: 1kal alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kal/nostruct-align/1kal.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kal/nostruct-align/1kal.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kal/nostruct-align/1kal.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23191/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.885986 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1kanA id: 1kanA alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kanA/nostruct-align/1kanA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kanA/nostruct-align/1kanA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kanA/nostruct-align/1kanA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27265/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.607910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1kao id: 1kao alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kao/nostruct-align/1kao.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kao/nostruct-align/1kao.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kao/nostruct-align/1kao.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21801/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.802856 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1kapP id: 1kapP alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kapP/nostruct-align/1kapP.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kapP/nostruct-align/1kapP.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kapP/nostruct-align/1kapP.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30261/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.385864 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1kapP_1 id: 1kapP_1 alignment found: /projects/compbio4/experiments/models.97/domains/1k/1kapP_1/nostruct-align/1kapP_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1k/1kapP_1/nostruct-align/1kapP_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1k/1kapP_1/nostruct-align/1kapP_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14024/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.510864 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1kapP_2 id: 1kapP_2 alignment found: /projects/compbio4/experiments/models.97/domains/1k/1kapP_2/nostruct-align/1kapP_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1k/1kapP_2/nostruct-align/1kapP_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1k/1kapP_2/nostruct-align/1kapP_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30532/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.285889 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1kas id: 1kas alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kas/nostruct-align/1kas.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kas/nostruct-align/1kas.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kas/nostruct-align/1kas.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21508/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.357910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1kay id: 1kay alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kay/nostruct-align/1kay.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kay/nostruct-align/1kay.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kay/nostruct-align/1kay.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24139/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.149902 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1kb5B id: 1kb5B alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kb5B/nostruct-align/1kb5B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kb5B/nostruct-align/1kb5B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kb5B/nostruct-align/1kb5B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10901/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.960938 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1kcw id: 1kcw alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kcw/nostruct-align/1kcw.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kcw/nostruct-align/1kcw.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kcw/nostruct-align/1kcw.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26212/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.027954 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1kdxA id: 1kdxA alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kdxA/nostruct-align/1kdxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kdxA/nostruct-align/1kdxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kdxA/nostruct-align/1kdxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18383/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.941895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1kfd_1 id: 1kfd_1 alignment found: /projects/compbio4/experiments/models.97/domains/1k/1kfd_1/nostruct-align/1kfd_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1k/1kfd_1/nostruct-align/1kfd_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1k/1kfd_1/nostruct-align/1kfd_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4144/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.689941 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1kfd_2 id: 1kfd_2 alignment found: /projects/compbio4/experiments/models.97/domains/1k/1kfd_2/nostruct-align/1kfd_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1k/1kfd_2/nostruct-align/1kfd_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1k/1kfd_2/nostruct-align/1kfd_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10511/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.641846 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1kid id: 1kid alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kid/nostruct-align/1kid.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kid/nostruct-align/1kid.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kid/nostruct-align/1kid.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3975/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.479980 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1kigI id: 1kigI alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kigI/nostruct-align/1kigI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kigI/nostruct-align/1kigI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kigI/nostruct-align/1kigI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14595/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.796875 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1kigL id: 1kigL alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kigL/nostruct-align/1kigL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kigL/nostruct-align/1kigL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kigL/nostruct-align/1kigL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22674/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.829956 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1kimA id: 1kimA alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kimA/nostruct-align/1kimA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kimA/nostruct-align/1kimA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kimA/nostruct-align/1kimA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24940/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.993896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1kit id: 1kit alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kit/nostruct-align/1kit.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kit/nostruct-align/1kit.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kit/nostruct-align/1kit.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-55/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.568848 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1kjs id: 1kjs alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kjs/nostruct-align/1kjs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kjs/nostruct-align/1kjs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kjs/nostruct-align/1kjs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12024/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.426880 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1klo id: 1klo alignment found: /projects/compbio/experiments/models.97/pdb/1k/1klo/nostruct-align/1klo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1klo/nostruct-align/1klo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1klo/nostruct-align/1klo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2641/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.251953 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1kmnD id: 1kmnD alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kmnD/nostruct-align/1kmnD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kmnD/nostruct-align/1kmnD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kmnD/nostruct-align/1kmnD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20086/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.064819 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1knb id: 1knb alignment found: /projects/compbio/experiments/models.97/pdb/1k/1knb/nostruct-align/1knb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1knb/nostruct-align/1knb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1knb/nostruct-align/1knb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17916/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.892944 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1knt id: 1knt alignment found: /projects/compbio/experiments/models.97/pdb/1k/1knt/nostruct-align/1knt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1knt/nostruct-align/1knt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1knt/nostruct-align/1knt.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-26537/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.901001 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1knyA id: 1knyA alignment found: /projects/compbio/experiments/models.97/pdb/1k/1knyA/nostruct-align/1knyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1knyA/nostruct-align/1knyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1knyA/nostruct-align/1knyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9726/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.629883 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1koe id: 1koe alignment found: /projects/compbio/experiments/models.97/pdb/1k/1koe/nostruct-align/1koe.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1koe/nostruct-align/1koe.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1koe/nostruct-align/1koe.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2432/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.159912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1kp6A id: 1kp6A alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kp6A/nostruct-align/1kp6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kp6A/nostruct-align/1kp6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kp6A/nostruct-align/1kp6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26518/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.653931 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1kpeA id: 1kpeA alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kpeA/nostruct-align/1kpeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kpeA/nostruct-align/1kpeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kpeA/nostruct-align/1kpeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1442/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.982910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1kpf id: 1kpf alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kpf/nostruct-align/1kpf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kpf/nostruct-align/1kpf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kpf/nostruct-align/1kpf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17267/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.201904 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1kptA id: 1kptA alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kptA/nostruct-align/1kptA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kptA/nostruct-align/1kptA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kptA/nostruct-align/1kptA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1999/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.352905 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1krs id: 1krs alignment found: /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4860/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.520996 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ksiB id: 1ksiB alignment found: /projects/compbio/experiments/models.97/pdb/1k/1ksiB/nostruct-align/1ksiB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1ksiB/nostruct-align/1ksiB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1ksiB/nostruct-align/1ksiB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22015/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.003784 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ksr id: 1ksr alignment found: /projects/compbio/experiments/models.97/pdb/1k/1ksr/nostruct-align/1ksr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1ksr/nostruct-align/1ksr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1ksr/nostruct-align/1ksr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20153/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.886841 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1kst id: 1kst alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kst/nostruct-align/1kst.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kst/nostruct-align/1kst.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kst/nostruct-align/1kst.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28971/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.672852 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1kte id: 1kte alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kte/nostruct-align/1kte.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kte/nostruct-align/1kte.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kte/nostruct-align/1kte.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32288/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.329834 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ktx id: 1ktx alignment found: /projects/compbio/experiments/models.97/pdb/1k/1ktx/nostruct-align/1ktx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1ktx/nostruct-align/1ktx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1ktx/nostruct-align/1ktx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1043/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.930908 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1kuh id: 1kuh alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kuh/nostruct-align/1kuh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kuh/nostruct-align/1kuh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kuh/nostruct-align/1kuh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2993/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.471924 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1kum id: 1kum alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kum/nostruct-align/1kum.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kum/nostruct-align/1kum.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kum/nostruct-align/1kum.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15782/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.052979 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1kveA id: 1kveA alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kveA/nostruct-align/1kveA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kveA/nostruct-align/1kveA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kveA/nostruct-align/1kveA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21077/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.905884 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1kveB id: 1kveB alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kveB/nostruct-align/1kveB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kveB/nostruct-align/1kveB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kveB/nostruct-align/1kveB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8791/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.459839 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1kvs id: 1kvs alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kvs/nostruct-align/1kvs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kvs/nostruct-align/1kvs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kvs/nostruct-align/1kvs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5420/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.812866 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1kwaA id: 1kwaA alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kwaA/nostruct-align/1kwaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kwaA/nostruct-align/1kwaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kwaA/nostruct-align/1kwaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1746/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.028931 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1kwaB id: 1kwaB alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kwaB/nostruct-align/1kwaB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kwaB/nostruct-align/1kwaB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kwaB/nostruct-align/1kwaB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10296/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.251831 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1kzuA id: 1kzuA alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kzuA/nostruct-align/1kzuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kzuA/nostruct-align/1kzuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kzuA/nostruct-align/1kzuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15901/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.729980 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1kzuB id: 1kzuB alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kzuB/nostruct-align/1kzuB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kzuB/nostruct-align/1kzuB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1k/1kzuB/nostruct-align/1kzuB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26385/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.973877 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1l58 id: 1l58 alignment found: /projects/compbio/experiments/models.97/pdb/1l/1l58/nostruct-align/1l58.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1l58/nostruct-align/1l58.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1l58/nostruct-align/1l58.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8841/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.053955 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1l92 id: 1l92 alignment found: /projects/compbio/experiments/models.97/pdb/1l/1l92/nostruct-align/1l92.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1l92/nostruct-align/1l92.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1l92/nostruct-align/1l92.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30982/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.964966 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lab id: 1lab alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lab/nostruct-align/1lab.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lab/nostruct-align/1lab.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lab/nostruct-align/1lab.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29230/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.464966 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lam id: 1lam alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lam/nostruct-align/1lam.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lam/nostruct-align/1lam.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lam/nostruct-align/1lam.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11838/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.389893 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lam_1 id: 1lam_1 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lam_1/nostruct-align/1lam_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lam_1/nostruct-align/1lam_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1lam_1/nostruct-align/1lam_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19374/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.980957 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lam_2 id: 1lam_2 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lam_2/nostruct-align/1lam_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lam_2/nostruct-align/1lam_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1lam_2/nostruct-align/1lam_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30956/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.803955 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1larA id: 1larA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1larA/nostruct-align/1larA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1larA/nostruct-align/1larA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1larA/nostruct-align/1larA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28918/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.034912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1latA id: 1latA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1latA/nostruct-align/1latA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1latA/nostruct-align/1latA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1latA/nostruct-align/1latA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28190/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.023926 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lay id: 1lay alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lay/nostruct-align/1lay.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lay/nostruct-align/1lay.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lay/nostruct-align/1lay.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10297/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.661011 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lba id: 1lba alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lba/nostruct-align/1lba.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lba/nostruct-align/1lba.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lba/nostruct-align/1lba.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28586/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.338989 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lbd id: 1lbd alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lbd/nostruct-align/1lbd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lbd/nostruct-align/1lbd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lbd/nostruct-align/1lbd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12636/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -20.391846 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lbeA id: 1lbeA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lbeA/nostruct-align/1lbeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lbeA/nostruct-align/1lbeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lbeA/nostruct-align/1lbeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29834/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.548828 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lbu id: 1lbu alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lbu/nostruct-align/1lbu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lbu/nostruct-align/1lbu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lbu/nostruct-align/1lbu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16063/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.574951 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lccA id: 1lccA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lccA/nostruct-align/1lccA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lccA/nostruct-align/1lccA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lccA/nostruct-align/1lccA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4238/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.339844 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lcdA id: 1lcdA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lcdA/nostruct-align/1lcdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lcdA/nostruct-align/1lcdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lcdA/nostruct-align/1lcdA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-15297/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.262817 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lci id: 1lci alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lci/nostruct-align/1lci.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lci/nostruct-align/1lci.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lci/nostruct-align/1lci.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18066/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.584839 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lcl id: 1lcl alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lcl/nostruct-align/1lcl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lcl/nostruct-align/1lcl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lcl/nostruct-align/1lcl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5396/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.699951 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lct id: 1lct alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lct/nostruct-align/1lct.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lct/nostruct-align/1lct.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lct/nostruct-align/1lct.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17227/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.174805 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ldb_1 id: 1ldb_1 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1ldb_1/nostruct-align/1ldb_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1ldb_1/nostruct-align/1ldb_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1ldb_1/nostruct-align/1ldb_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13790/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.959839 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ldb_2 id: 1ldb_2 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1ldb_2/nostruct-align/1ldb_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1ldb_2/nostruct-align/1ldb_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1ldb_2/nostruct-align/1ldb_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18841/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.777954 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ldl id: 1ldl alignment found: /projects/compbio/experiments/models.97/pdb/1l/1ldl/nostruct-align/1ldl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1ldl/nostruct-align/1ldl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1ldl/nostruct-align/1ldl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4291/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.295898 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ldm_1 id: 1ldm_1 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1ldm_1/nostruct-align/1ldm_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1ldm_1/nostruct-align/1ldm_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1ldm_1/nostruct-align/1ldm_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26773/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.545898 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ldm_2 id: 1ldm_2 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1ldm_2/nostruct-align/1ldm_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1ldm_2/nostruct-align/1ldm_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1ldm_2/nostruct-align/1ldm_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25578/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.744873 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ldr id: 1ldr alignment found: /projects/compbio/experiments/models.97/pdb/1l/1ldr/nostruct-align/1ldr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1ldr/nostruct-align/1ldr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1ldr/nostruct-align/1ldr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12198/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.163818 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ldtL id: 1ldtL alignment found: /projects/compbio/experiments/models.97/pdb/1l/1ldtL/nostruct-align/1ldtL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1ldtL/nostruct-align/1ldtL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1ldtL/nostruct-align/1ldtL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27867/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.698975 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1le4 id: 1le4 alignment found: /projects/compbio/experiments/models.97/pdb/1l/1le4/nostruct-align/1le4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1le4/nostruct-align/1le4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1le4/nostruct-align/1le4.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12346/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.357910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lea id: 1lea alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lea/nostruct-align/1lea.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lea/nostruct-align/1lea.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lea/nostruct-align/1lea.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14688/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.526855 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1led id: 1led alignment found: /projects/compbio/experiments/models.97/pdb/1l/1led/nostruct-align/1led.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1led/nostruct-align/1led.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1led/nostruct-align/1led.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19356/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.646973 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lehA id: 1lehA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lehA/nostruct-align/1lehA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lehA/nostruct-align/1lehA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lehA/nostruct-align/1lehA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32111/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.334961 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lepA id: 1lepA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lepA/nostruct-align/1lepA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lepA/nostruct-align/1lepA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lepA/nostruct-align/1lepA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11968/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.209961 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lfaA id: 1lfaA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lfaA/nostruct-align/1lfaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lfaA/nostruct-align/1lfaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lfaA/nostruct-align/1lfaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11712/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.186890 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lfb id: 1lfb alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lfb/nostruct-align/1lfb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lfb/nostruct-align/1lfb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lfb/nostruct-align/1lfb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10932/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.100830 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lfdA id: 1lfdA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lfdA/nostruct-align/1lfdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lfdA/nostruct-align/1lfdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lfdA/nostruct-align/1lfdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21918/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.142944 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lghA id: 1lghA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lghA/nostruct-align/1lghA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lghA/nostruct-align/1lghA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lghA/nostruct-align/1lghA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20612/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.012939 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lghB id: 1lghB alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lghB/nostruct-align/1lghB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lghB/nostruct-align/1lghB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lghB/nostruct-align/1lghB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1075/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.065918 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lgr id: 1lgr alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lgr/nostruct-align/1lgr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lgr/nostruct-align/1lgr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lgr/nostruct-align/1lgr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26537/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.293945 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lh1 id: 1lh1 alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lh1/nostruct-align/1lh1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lh1/nostruct-align/1lh1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lh1/nostruct-align/1lh1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24389/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.298950 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1liaA id: 1liaA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1liaA/nostruct-align/1liaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1liaA/nostruct-align/1liaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1liaA/nostruct-align/1liaA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-28868/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.998901 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lid id: 1lid alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lid/nostruct-align/1lid.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lid/nostruct-align/1lid.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lid/nostruct-align/1lid.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24440/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.460938 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lis id: 1lis alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lis/nostruct-align/1lis.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lis/nostruct-align/1lis.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lis/nostruct-align/1lis.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12896/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.613892 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lit id: 1lit alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lit/nostruct-align/1lit.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lit/nostruct-align/1lit.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lit/nostruct-align/1lit.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-29011/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.864868 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ljrA id: 1ljrA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1ljrA/nostruct-align/1ljrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1ljrA/nostruct-align/1ljrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1ljrA/nostruct-align/1ljrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14993/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.302856 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lkfA id: 1lkfA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lkfA/nostruct-align/1lkfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lkfA/nostruct-align/1lkfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lkfA/nostruct-align/1lkfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15444/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.520874 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lki id: 1lki alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lki/nostruct-align/1lki.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lki/nostruct-align/1lki.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lki/nostruct-align/1lki.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19695/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.534912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lkkA id: 1lkkA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lkkA/nostruct-align/1lkkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lkkA/nostruct-align/1lkkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lkkA/nostruct-align/1lkkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22507/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.914917 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lktA id: 1lktA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lktA/nostruct-align/1lktA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lktA/nostruct-align/1lktA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lktA/nostruct-align/1lktA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5923/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.501953 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ll1 id: 1ll1 alignment found: /projects/compbio/experiments/models.97/pdb/1l/1ll1/nostruct-align/1ll1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1ll1/nostruct-align/1ll1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1ll1/nostruct-align/1ll1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32741/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.329956 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lla id: 1lla alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lla/nostruct-align/1lla.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lla/nostruct-align/1lla.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lla/nostruct-align/1lla.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31537/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.353882 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lla_1 id: 1lla_1 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lla_1/nostruct-align/1lla_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lla_1/nostruct-align/1lla_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1lla_1/nostruct-align/1lla_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23366/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.427002 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lla_2 id: 1lla_2 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lla_2/nostruct-align/1lla_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lla_2/nostruct-align/1lla_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1lla_2/nostruct-align/1lla_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4136/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.013916 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lldA id: 1lldA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lldA/nostruct-align/1lldA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lldA/nostruct-align/1lldA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lldA/nostruct-align/1lldA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17370/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.847900 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lldA_1 id: 1lldA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lldA_1/nostruct-align/1lldA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lldA_1/nostruct-align/1lldA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1lldA_1/nostruct-align/1lldA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19969/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.224854 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lldA_2 id: 1lldA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lldA_2/nostruct-align/1lldA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lldA_2/nostruct-align/1lldA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1lldA_2/nostruct-align/1lldA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2934/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.666870 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lliA id: 1lliA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lliA/nostruct-align/1lliA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lliA/nostruct-align/1lliA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lliA/nostruct-align/1lliA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18293/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.480835 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1llp id: 1llp alignment found: /projects/compbio/experiments/models.97/pdb/1l/1llp/nostruct-align/1llp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1llp/nostruct-align/1llp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1llp/nostruct-align/1llp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2264/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.798950 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lmb3 id: 1lmb3 alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lmb3/nostruct-align/1lmb3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lmb3/nostruct-align/1lmb3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lmb3/nostruct-align/1lmb3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12462/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.218872 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lml id: 1lml alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lml/nostruct-align/1lml.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lml/nostruct-align/1lml.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lml/nostruct-align/1lml.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19143/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.571899 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lmq id: 1lmq alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lmq/nostruct-align/1lmq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lmq/nostruct-align/1lmq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lmq/nostruct-align/1lmq.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26332/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.919800 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lnh id: 1lnh alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lnh/nostruct-align/1lnh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lnh/nostruct-align/1lnh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lnh/nostruct-align/1lnh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25882/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.817871 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lopA id: 1lopA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lopA/nostruct-align/1lopA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lopA/nostruct-align/1lopA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lopA/nostruct-align/1lopA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9072/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.519897 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lou id: 1lou alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lou/nostruct-align/1lou.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lou/nostruct-align/1lou.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lou/nostruct-align/1lou.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7233/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.572876 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1louA id: 1louA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1louA/nostruct-align/1louA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1louA/nostruct-align/1louA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1louA/nostruct-align/1louA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27646/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.595947 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lox id: 1lox alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lox/nostruct-align/1lox.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lox/nostruct-align/1lox.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lox/nostruct-align/1lox.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16014/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.042969 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lpbA id: 1lpbA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lpbA/nostruct-align/1lpbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lpbA/nostruct-align/1lpbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lpbA/nostruct-align/1lpbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31809/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.356934 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lpbA_1 id: 1lpbA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lpbA_1/nostruct-align/1lpbA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lpbA_1/nostruct-align/1lpbA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1lpbA_1/nostruct-align/1lpbA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24158/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.320923 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lpbA_2 id: 1lpbA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lpbA_2/nostruct-align/1lpbA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lpbA_2/nostruct-align/1lpbA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1lpbA_2/nostruct-align/1lpbA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6990/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.670898 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lpe id: 1lpe alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lpe/nostruct-align/1lpe.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lpe/nostruct-align/1lpe.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lpe/nostruct-align/1lpe.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23383/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.992920 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lpt id: 1lpt alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lpt/nostruct-align/1lpt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lpt/nostruct-align/1lpt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lpt/nostruct-align/1lpt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9479/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.518799 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lre id: 1lre alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lre/nostruct-align/1lre.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lre/nostruct-align/1lre.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lre/nostruct-align/1lre.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8461/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.924927 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lrv id: 1lrv alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lrv/nostruct-align/1lrv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lrv/nostruct-align/1lrv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lrv/nostruct-align/1lrv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31708/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.036865 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lst id: 1lst alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lst/nostruct-align/1lst.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lst/nostruct-align/1lst.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lst/nostruct-align/1lst.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4970/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.769897 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lt3A id: 1lt3A alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lt3A/nostruct-align/1lt3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lt3A/nostruct-align/1lt3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lt3A/nostruct-align/1lt3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14193/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.303833 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ltaC id: 1ltaC alignment found: /projects/compbio/experiments/models.97/pdb/1l/1ltaC/nostruct-align/1ltaC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1ltaC/nostruct-align/1ltaC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1ltaC/nostruct-align/1ltaC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23368/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.615967 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ltm id: 1ltm alignment found: /projects/compbio/experiments/models.97/pdb/1l/1ltm/nostruct-align/1ltm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1ltm/nostruct-align/1ltm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1ltm/nostruct-align/1ltm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5876/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.949951 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ltsA id: 1ltsA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1ltsA/nostruct-align/1ltsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1ltsA/nostruct-align/1ltsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1ltsA/nostruct-align/1ltsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10139/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.047852 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ltsC id: 1ltsC alignment found: /projects/compbio/experiments/models.97/pdb/1l/1ltsC/nostruct-align/1ltsC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1ltsC/nostruct-align/1ltsC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1ltsC/nostruct-align/1ltsC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26573/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.438843 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ltsD id: 1ltsD alignment found: /projects/compbio/experiments/models.97/pdb/1l/1ltsD/nostruct-align/1ltsD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1ltsD/nostruct-align/1ltsD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1ltsD/nostruct-align/1ltsD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17741/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.451904 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lts_1a1 id: 1lts_1a1 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lts_1a1/nostruct-align/1lts_1a1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lts_1a1/nostruct-align/1lts_1a1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1lts_1a1/nostruct-align/1lts_1a1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28555/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.517944 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lucA id: 1lucA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lucA/nostruct-align/1lucA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lucA/nostruct-align/1lucA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lucA/nostruct-align/1lucA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1389/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.241821 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lucB id: 1lucB alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lucB/nostruct-align/1lucB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lucB/nostruct-align/1lucB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lucB/nostruct-align/1lucB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20825/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.033813 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lvk id: 1lvk alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lvk/nostruct-align/1lvk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lvk/nostruct-align/1lvk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lvk/nostruct-align/1lvk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21081/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.904907 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lvl id: 1lvl alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lvl/nostruct-align/1lvl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lvl/nostruct-align/1lvl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lvl/nostruct-align/1lvl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2619/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.634888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lvl_1 id: 1lvl_1 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lvl_1/nostruct-align/1lvl_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lvl_1/nostruct-align/1lvl_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1lvl_1/nostruct-align/1lvl_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18797/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.734863 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lvl_2 id: 1lvl_2 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lvl_2/nostruct-align/1lvl_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lvl_2/nostruct-align/1lvl_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1lvl_2/nostruct-align/1lvl_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11225/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.618896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lvl_3 id: 1lvl_3 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lvl_3/nostruct-align/1lvl_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lvl_3/nostruct-align/1lvl_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1lvl_3/nostruct-align/1lvl_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29668/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.125854 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lxa id: 1lxa alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lxa/nostruct-align/1lxa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lxa/nostruct-align/1lxa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lxa/nostruct-align/1lxa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15668/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.307861 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lxtA id: 1lxtA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lxtA/nostruct-align/1lxtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lxtA/nostruct-align/1lxtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lxtA/nostruct-align/1lxtA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17600/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.392822 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lylA id: 1lylA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lylA/nostruct-align/1lylA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lylA/nostruct-align/1lylA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lylA/nostruct-align/1lylA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10638/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.001953 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lylA_1 id: 1lylA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lylA_1/nostruct-align/1lylA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lylA_1/nostruct-align/1lylA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1lylA_1/nostruct-align/1lylA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11604/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.037842 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lylA_2 id: 1lylA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lylA_2/nostruct-align/1lylA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lylA_2/nostruct-align/1lylA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1l/1lylA_2/nostruct-align/1lylA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20219/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.648926 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lyp id: 1lyp alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lyp/nostruct-align/1lyp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lyp/nostruct-align/1lyp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lyp/nostruct-align/1lyp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10229/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.751831 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1lywA id: 1lywA alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lywA/nostruct-align/1lywA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lywA/nostruct-align/1lywA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1l/1lywA/nostruct-align/1lywA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-504/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.776855 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1m6pA id: 1m6pA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1m6pA/nostruct-align/1m6pA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1m6pA/nostruct-align/1m6pA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1m6pA/nostruct-align/1m6pA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24544/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.299927 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mai id: 1mai alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mai/nostruct-align/1mai.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mai/nostruct-align/1mai.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mai/nostruct-align/1mai.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32216/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.789917 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mak id: 1mak alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mak/nostruct-align/1mak.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mak/nostruct-align/1mak.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mak/nostruct-align/1mak.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28910/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.737915 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mal id: 1mal alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mal/nostruct-align/1mal.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mal/nostruct-align/1mal.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mal/nostruct-align/1mal.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4306/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.726929 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mat id: 1mat alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mat/nostruct-align/1mat.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mat/nostruct-align/1mat.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mat/nostruct-align/1mat.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29828/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.074829 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1maz id: 1maz alignment found: /projects/compbio/experiments/models.97/pdb/1m/1maz/nostruct-align/1maz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1maz/nostruct-align/1maz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1maz/nostruct-align/1maz.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18013/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.073853 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mba id: 1mba alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mba/nostruct-align/1mba.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mba/nostruct-align/1mba.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mba/nostruct-align/1mba.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3822/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.441895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mbd id: 1mbd alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mbd/nostruct-align/1mbd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mbd/nostruct-align/1mbd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mbd/nostruct-align/1mbd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29840/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.316895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mbe id: 1mbe alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mbe/nostruct-align/1mbe.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mbe/nostruct-align/1mbe.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mbe/nostruct-align/1mbe.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13959/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.705933 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mctA id: 1mctA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mctA/nostruct-align/1mctA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mctA/nostruct-align/1mctA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mctA/nostruct-align/1mctA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27903/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.490967 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mctI id: 1mctI alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mctI/nostruct-align/1mctI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mctI/nostruct-align/1mctI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mctI/nostruct-align/1mctI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11258/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.635864 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mdc id: 1mdc alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mdc/nostruct-align/1mdc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mdc/nostruct-align/1mdc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mdc/nostruct-align/1mdc.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-194/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.449951 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mdiA id: 1mdiA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mdiA/nostruct-align/1mdiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mdiA/nostruct-align/1mdiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mdiA/nostruct-align/1mdiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12352/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.419922 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mdl id: 1mdl alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mdl/nostruct-align/1mdl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mdl/nostruct-align/1mdl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mdl/nostruct-align/1mdl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1354/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -164.839966 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mdyA id: 1mdyA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mdyA/nostruct-align/1mdyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mdyA/nostruct-align/1mdyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mdyA/nostruct-align/1mdyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4887/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.490845 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mea id: 1mea alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mea/nostruct-align/1mea.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mea/nostruct-align/1mea.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mea/nostruct-align/1mea.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5545/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.974854 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1memA id: 1memA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1memA/nostruct-align/1memA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1memA/nostruct-align/1memA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1memA/nostruct-align/1memA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20899/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.266846 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mfa id: 1mfa alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mfa/nostruct-align/1mfa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mfa/nostruct-align/1mfa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mfa/nostruct-align/1mfa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24719/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.053955 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mfiA id: 1mfiA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mfiA/nostruct-align/1mfiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mfiA/nostruct-align/1mfiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mfiA/nostruct-align/1mfiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6287/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.574951 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mfmA id: 1mfmA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mfmA/nostruct-align/1mfmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mfmA/nostruct-align/1mfmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mfmA/nostruct-align/1mfmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11652/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.945923 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mfs id: 1mfs alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mfs/nostruct-align/1mfs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mfs/nostruct-align/1mfs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mfs/nostruct-align/1mfs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29947/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.667847 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mgn id: 1mgn alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mgn/nostruct-align/1mgn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mgn/nostruct-align/1mgn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mgn/nostruct-align/1mgn.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22160/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.429810 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mgtA id: 1mgtA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mgtA/nostruct-align/1mgtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mgtA/nostruct-align/1mgtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mgtA/nostruct-align/1mgtA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2941/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.166870 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mh1 id: 1mh1 alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mh1/nostruct-align/1mh1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mh1/nostruct-align/1mh1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mh1/nostruct-align/1mh1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28588/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.766968 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mhdA id: 1mhdA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mhdA/nostruct-align/1mhdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mhdA/nostruct-align/1mhdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mhdA/nostruct-align/1mhdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6321/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.707886 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mhlA id: 1mhlA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mhlA/nostruct-align/1mhlA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mhlA/nostruct-align/1mhlA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mhlA/nostruct-align/1mhlA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29336/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.556885 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mhlC id: 1mhlC alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mhlC/nostruct-align/1mhlC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mhlC/nostruct-align/1mhlC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mhlC/nostruct-align/1mhlC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18797/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.444946 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mhl_1a1 id: 1mhl_1a1 alignment found: /projects/compbio4/experiments/models.97/domains/1m/1mhl_1a1/nostruct-align/1mhl_1a1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1m/1mhl_1a1/nostruct-align/1mhl_1a1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1m/1mhl_1a1/nostruct-align/1mhl_1a1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7510/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.488892 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mho id: 1mho alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mho/nostruct-align/1mho.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mho/nostruct-align/1mho.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mho/nostruct-align/1mho.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30236/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.237915 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mhu id: 1mhu alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mhu/nostruct-align/1mhu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mhu/nostruct-align/1mhu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mhu/nostruct-align/1mhu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24749/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.573853 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mhyD id: 1mhyD alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mhyD/nostruct-align/1mhyD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mhyD/nostruct-align/1mhyD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mhyD/nostruct-align/1mhyD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32243/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.789917 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1minB id: 1minB alignment found: /projects/compbio/experiments/models.97/pdb/1m/1minB/nostruct-align/1minB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1minB/nostruct-align/1minB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1minB/nostruct-align/1minB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-10511/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.364868 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mjc id: 1mjc alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mjc/nostruct-align/1mjc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mjc/nostruct-align/1mjc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mjc/nostruct-align/1mjc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23205/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.465820 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mjhA id: 1mjhA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mjhA/nostruct-align/1mjhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mjhA/nostruct-align/1mjhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mjhA/nostruct-align/1mjhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14231/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.855957 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mjhB id: 1mjhB alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mjhB/nostruct-align/1mjhB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mjhB/nostruct-align/1mjhB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mjhB/nostruct-align/1mjhB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26334/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.103882 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mjoA id: 1mjoA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mjoA/nostruct-align/1mjoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mjoA/nostruct-align/1mjoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mjoA/nostruct-align/1mjoA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-25248/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.446899 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mkaA id: 1mkaA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mkaA/nostruct-align/1mkaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mkaA/nostruct-align/1mkaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mkaA/nostruct-align/1mkaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16513/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.610962 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mkcA id: 1mkcA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mkcA/nostruct-align/1mkcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mkcA/nostruct-align/1mkcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mkcA/nostruct-align/1mkcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18377/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.922852 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mknA id: 1mknA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mknA/nostruct-align/1mknA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mknA/nostruct-align/1mknA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mknA/nostruct-align/1mknA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8106/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.849976 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mla id: 1mla alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mla/nostruct-align/1mla.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mla/nostruct-align/1mla.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mla/nostruct-align/1mla.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29415/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.442993 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mla_1 id: 1mla_1 alignment found: /projects/compbio4/experiments/models.97/domains/1m/1mla_1/nostruct-align/1mla_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1m/1mla_1/nostruct-align/1mla_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1m/1mla_1/nostruct-align/1mla_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26470/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.237915 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mla_2 id: 1mla_2 alignment found: /projects/compbio4/experiments/models.97/domains/1m/1mla_2/nostruct-align/1mla_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1m/1mla_2/nostruct-align/1mla_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1m/1mla_2/nostruct-align/1mla_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1379/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.913818 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mlbA id: 1mlbA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mlbA/nostruct-align/1mlbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mlbA/nostruct-align/1mlbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mlbA/nostruct-align/1mlbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11050/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.846802 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mlcB id: 1mlcB alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mlcB/nostruct-align/1mlcB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mlcB/nostruct-align/1mlcB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mlcB/nostruct-align/1mlcB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21932/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.229858 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mli id: 1mli alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mli/nostruct-align/1mli.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mli/nostruct-align/1mli.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mli/nostruct-align/1mli.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24734/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.529907 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mml id: 1mml alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mml/nostruct-align/1mml.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mml/nostruct-align/1mml.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mml/nostruct-align/1mml.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14842/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.116821 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mmoB id: 1mmoB alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mmoB/nostruct-align/1mmoB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mmoB/nostruct-align/1mmoB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mmoB/nostruct-align/1mmoB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16865/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.168823 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mmoD id: 1mmoD alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mmoD/nostruct-align/1mmoD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mmoD/nostruct-align/1mmoD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mmoD/nostruct-align/1mmoD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23230/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.869873 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mmoG id: 1mmoG alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mmoG/nostruct-align/1mmoG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mmoG/nostruct-align/1mmoG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mmoG/nostruct-align/1mmoG.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8008/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.550781 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mn1 id: 1mn1 alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mn1/nostruct-align/1mn1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mn1/nostruct-align/1mn1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mn1/nostruct-align/1mn1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-162/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.286987 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mnd id: 1mnd alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mnd/nostruct-align/1mnd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mnd/nostruct-align/1mnd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mnd/nostruct-align/1mnd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22541/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.006836 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mngA id: 1mngA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mngA/nostruct-align/1mngA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mngA/nostruct-align/1mngA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mngA/nostruct-align/1mngA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-798/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.929932 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mngA_1 id: 1mngA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1m/1mngA_1/nostruct-align/1mngA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1m/1mngA_1/nostruct-align/1mngA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1m/1mngA_1/nostruct-align/1mngA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13970/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.735962 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mngA_2 id: 1mngA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1m/1mngA_2/nostruct-align/1mngA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1m/1mngA_2/nostruct-align/1mngA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1m/1mngA_2/nostruct-align/1mngA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29123/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.187866 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mnmA id: 1mnmA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mnmA/nostruct-align/1mnmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mnmA/nostruct-align/1mnmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mnmA/nostruct-align/1mnmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24448/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.913940 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mnmC id: 1mnmC alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mnmC/nostruct-align/1mnmC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mnmC/nostruct-align/1mnmC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mnmC/nostruct-align/1mnmC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18648/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.724854 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mntA id: 1mntA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mntA/nostruct-align/1mntA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mntA/nostruct-align/1mntA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mntA/nostruct-align/1mntA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18719/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.683960 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mof id: 1mof alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mof/nostruct-align/1mof.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mof/nostruct-align/1mof.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mof/nostruct-align/1mof.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19091/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.192871 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1molA id: 1molA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1molA/nostruct-align/1molA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1molA/nostruct-align/1molA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1molA/nostruct-align/1molA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19024/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.812866 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1moq id: 1moq alignment found: /projects/compbio/experiments/models.97/pdb/1m/1moq/nostruct-align/1moq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1moq/nostruct-align/1moq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1moq/nostruct-align/1moq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-405/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -22.081909 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mpb id: 1mpb alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mpb/nostruct-align/1mpb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mpb/nostruct-align/1mpb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mpb/nostruct-align/1mpb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29915/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.268921 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mpgA id: 1mpgA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mpgA/nostruct-align/1mpgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mpgA/nostruct-align/1mpgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mpgA/nostruct-align/1mpgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10445/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.592896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mpp id: 1mpp alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mpp/nostruct-align/1mpp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mpp/nostruct-align/1mpp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mpp/nostruct-align/1mpp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6339/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.484863 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mpyA id: 1mpyA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mpyA/nostruct-align/1mpyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mpyA/nostruct-align/1mpyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mpyA/nostruct-align/1mpyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-514/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.857910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mrj id: 1mrj alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mrj/nostruct-align/1mrj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mrj/nostruct-align/1mrj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mrj/nostruct-align/1mrj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15247/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.418945 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mroA id: 1mroA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mroA/nostruct-align/1mroA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mroA/nostruct-align/1mroA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mroA/nostruct-align/1mroA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3861/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.154907 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mroB id: 1mroB alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mroB/nostruct-align/1mroB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mroB/nostruct-align/1mroB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mroB/nostruct-align/1mroB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18161/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.070923 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mroC id: 1mroC alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mroC/nostruct-align/1mroC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mroC/nostruct-align/1mroC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mroC/nostruct-align/1mroC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22489/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.626953 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mrp id: 1mrp alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mrp/nostruct-align/1mrp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mrp/nostruct-align/1mrp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mrp/nostruct-align/1mrp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30016/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.956787 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mrt id: 1mrt alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mrt/nostruct-align/1mrt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mrt/nostruct-align/1mrt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mrt/nostruct-align/1mrt.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24933/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.556885 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1msaA id: 1msaA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1msaA/nostruct-align/1msaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1msaA/nostruct-align/1msaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1msaA/nostruct-align/1msaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17862/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.115845 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1msc id: 1msc alignment found: /projects/compbio/experiments/models.97/pdb/1m/1msc/nostruct-align/1msc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1msc/nostruct-align/1msc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1msc/nostruct-align/1msc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8846/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.842896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mseC_1 id: 1mseC_1 alignment found: /projects/compbio4/experiments/models.97/domains/1m/1mseC_1/nostruct-align/1mseC_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1m/1mseC_1/nostruct-align/1mseC_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1m/1mseC_1/nostruct-align/1mseC_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21668/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.672852 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mseC_2 id: 1mseC_2 alignment found: /projects/compbio4/experiments/models.97/domains/1m/1mseC_2/nostruct-align/1mseC_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1m/1mseC_2/nostruct-align/1mseC_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1m/1mseC_2/nostruct-align/1mseC_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3293/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.640869 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1msi id: 1msi alignment found: /projects/compbio/experiments/models.97/pdb/1m/1msi/nostruct-align/1msi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1msi/nostruct-align/1msi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1msi/nostruct-align/1msi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22660/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.475952 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1msk id: 1msk alignment found: /projects/compbio/experiments/models.97/pdb/1m/1msk/nostruct-align/1msk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1msk/nostruct-align/1msk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1msk/nostruct-align/1msk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31231/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.646851 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mslA id: 1mslA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mslA/nostruct-align/1mslA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mslA/nostruct-align/1mslA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mslA/nostruct-align/1mslA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3632/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.457886 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mspA id: 1mspA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mspA/nostruct-align/1mspA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mspA/nostruct-align/1mspA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mspA/nostruct-align/1mspA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15316/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.437866 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mtnC id: 1mtnC alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mtnC/nostruct-align/1mtnC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mtnC/nostruct-align/1mtnC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mtnC/nostruct-align/1mtnC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19088/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.770874 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mtyB id: 1mtyB alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mtyB/nostruct-align/1mtyB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mtyB/nostruct-align/1mtyB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mtyB/nostruct-align/1mtyB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15294/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.612793 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mtyD id: 1mtyD alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mtyD/nostruct-align/1mtyD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mtyD/nostruct-align/1mtyD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mtyD/nostruct-align/1mtyD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30229/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.869873 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mtyG id: 1mtyG alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mtyG/nostruct-align/1mtyG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mtyG/nostruct-align/1mtyG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mtyG/nostruct-align/1mtyG.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1776/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.550781 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mucA id: 1mucA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mucA/nostruct-align/1mucA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mucA/nostruct-align/1mucA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mucA/nostruct-align/1mucA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32106/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -155.575806 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mugA id: 1mugA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mugA/nostruct-align/1mugA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mugA/nostruct-align/1mugA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mugA/nostruct-align/1mugA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18987/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.666870 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mun id: 1mun alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mun/nostruct-align/1mun.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mun/nostruct-align/1mun.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mun/nostruct-align/1mun.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2134/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.745850 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mup id: 1mup alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mup/nostruct-align/1mup.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mup/nostruct-align/1mup.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mup/nostruct-align/1mup.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31492/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.635864 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mut id: 1mut alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mut/nostruct-align/1mut.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mut/nostruct-align/1mut.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mut/nostruct-align/1mut.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1942/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.782837 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mvpA id: 1mvpA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mvpA/nostruct-align/1mvpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mvpA/nostruct-align/1mvpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mvpA/nostruct-align/1mvpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26985/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.294922 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mwpA id: 1mwpA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mwpA/nostruct-align/1mwpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mwpA/nostruct-align/1mwpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mwpA/nostruct-align/1mwpA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7411/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.546997 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mxa id: 1mxa alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mxa/nostruct-align/1mxa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mxa/nostruct-align/1mxa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mxa/nostruct-align/1mxa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5628/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.413940 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mxb id: 1mxb alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mxb/nostruct-align/1mxb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mxb/nostruct-align/1mxb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mxb/nostruct-align/1mxb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20020/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.135864 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mykA id: 1mykA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mykA/nostruct-align/1mykA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mykA/nostruct-align/1mykA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mykA/nostruct-align/1mykA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31278/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.491821 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mypA id: 1mypA alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mypA/nostruct-align/1mypA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mypA/nostruct-align/1mypA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1mypA/nostruct-align/1mypA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29948/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.015991 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mysA_1 id: 1mysA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1m/1mysA_1/nostruct-align/1mysA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1m/1mysA_1/nostruct-align/1mysA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1m/1mysA_1/nostruct-align/1mysA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7460/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.051880 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1mysA_2 id: 1mysA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1m/1mysA_2/nostruct-align/1mysA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1m/1mysA_2/nostruct-align/1mysA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1m/1mysA_2/nostruct-align/1mysA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19994/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.649780 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1myt id: 1myt alignment found: /projects/compbio/experiments/models.97/pdb/1m/1myt/nostruct-align/1myt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1myt/nostruct-align/1myt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1m/1myt/nostruct-align/1myt.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27387/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.293945 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nal1 id: 1nal1 alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nal1/nostruct-align/1nal1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nal1/nostruct-align/1nal1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nal1/nostruct-align/1nal1.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-8260/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.551880 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nal3 id: 1nal3 alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nal3/nostruct-align/1nal3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nal3/nostruct-align/1nal3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nal3/nostruct-align/1nal3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28555/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.505981 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1napA id: 1napA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1napA/nostruct-align/1napA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1napA/nostruct-align/1napA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1napA/nostruct-align/1napA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-16707/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.916870 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nar id: 1nar alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nar/nostruct-align/1nar.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nar/nostruct-align/1nar.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nar/nostruct-align/1nar.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12534/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.659912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nbaA id: 1nbaA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nbaA/nostruct-align/1nbaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nbaA/nostruct-align/1nbaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nbaA/nostruct-align/1nbaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4523/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.707886 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nbcA id: 1nbcA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nbcA/nostruct-align/1nbcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nbcA/nostruct-align/1nbcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nbcA/nostruct-align/1nbcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15964/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.431885 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nbmG id: 1nbmG alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nbmG/nostruct-align/1nbmG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nbmG/nostruct-align/1nbmG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nbmG/nostruct-align/1nbmG.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25506/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.226929 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ncfA_1 id: 1ncfA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1n/1ncfA_1/nostruct-align/1ncfA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1n/1ncfA_1/nostruct-align/1ncfA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1n/1ncfA_1/nostruct-align/1ncfA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29567/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.989868 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ncfA_2 id: 1ncfA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1n/1ncfA_2/nostruct-align/1ncfA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1n/1ncfA_2/nostruct-align/1ncfA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1n/1ncfA_2/nostruct-align/1ncfA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9996/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.353882 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ncfA_3 id: 1ncfA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1n/1ncfA_3/nostruct-align/1ncfA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1n/1ncfA_3/nostruct-align/1ncfA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1n/1ncfA_3/nostruct-align/1ncfA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22187/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.082886 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nciA id: 1nciA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nciA/nostruct-align/1nciA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nciA/nostruct-align/1nciA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nciA/nostruct-align/1nciA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18130/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.447876 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ncs id: 1ncs alignment found: /projects/compbio/experiments/models.97/pdb/1n/1ncs/nostruct-align/1ncs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1ncs/nostruct-align/1ncs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1ncs/nostruct-align/1ncs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22674/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.522949 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nct id: 1nct alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nct/nostruct-align/1nct.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nct/nostruct-align/1nct.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nct/nostruct-align/1nct.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13715/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.273926 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ncx id: 1ncx alignment found: /projects/compbio/experiments/models.97/pdb/1n/1ncx/nostruct-align/1ncx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1ncx/nostruct-align/1ncx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1ncx/nostruct-align/1ncx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4698/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.460938 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nddD id: 1nddD alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nddD/nostruct-align/1nddD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nddD/nostruct-align/1nddD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nddD/nostruct-align/1nddD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-115/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.997925 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ndh id: 1ndh alignment found: /projects/compbio/experiments/models.97/pdb/1n/1ndh/nostruct-align/1ndh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1ndh/nostruct-align/1ndh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1ndh/nostruct-align/1ndh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31191/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.132935 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ndk id: 1ndk alignment found: /projects/compbio/experiments/models.97/pdb/1n/1ndk/nostruct-align/1ndk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1ndk/nostruct-align/1ndk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1ndk/nostruct-align/1ndk.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19123/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.817993 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ndoA id: 1ndoA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1ndoA/nostruct-align/1ndoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1ndoA/nostruct-align/1ndoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1ndoA/nostruct-align/1ndoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29853/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.849854 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ndoB id: 1ndoB alignment found: /projects/compbio/experiments/models.97/pdb/1n/1ndoB/nostruct-align/1ndoB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1ndoB/nostruct-align/1ndoB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1ndoB/nostruct-align/1ndoB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10524/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.790894 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nedA id: 1nedA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nedA/nostruct-align/1nedA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nedA/nostruct-align/1nedA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nedA/nostruct-align/1nedA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29658/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.466919 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1neq id: 1neq alignment found: /projects/compbio/experiments/models.97/pdb/1n/1neq/nostruct-align/1neq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1neq/nostruct-align/1neq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1neq/nostruct-align/1neq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25222/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.940918 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1neu id: 1neu alignment found: /projects/compbio/experiments/models.97/pdb/1n/1neu/nostruct-align/1neu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1neu/nostruct-align/1neu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1neu/nostruct-align/1neu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27845/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.720947 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1new id: 1new alignment found: /projects/compbio/experiments/models.97/pdb/1n/1new/nostruct-align/1new.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1new/nostruct-align/1new.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1new/nostruct-align/1new.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13065/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.418945 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nf1A id: 1nf1A alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nf1A/nostruct-align/1nf1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nf1A/nostruct-align/1nf1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nf1A/nostruct-align/1nf1A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15667/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.100952 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nfa id: 1nfa alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nfa/nostruct-align/1nfa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nfa/nostruct-align/1nfa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nfa/nostruct-align/1nfa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6053/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.577881 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nfdA id: 1nfdA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nfdA/nostruct-align/1nfdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nfdA/nostruct-align/1nfdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nfdA/nostruct-align/1nfdA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-13615/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.978882 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nfiA id: 1nfiA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nfiA/nostruct-align/1nfiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nfiA/nostruct-align/1nfiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nfiA/nostruct-align/1nfiA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31132/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.050903 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nfiE id: 1nfiE alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nfiE/nostruct-align/1nfiE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nfiE/nostruct-align/1nfiE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nfiE/nostruct-align/1nfiE.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-9418/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.339966 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nfkA id: 1nfkA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nfkA/nostruct-align/1nfkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nfkA/nostruct-align/1nfkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nfkA/nostruct-align/1nfkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3452/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.368896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nfn id: 1nfn alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nfn/nostruct-align/1nfn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nfn/nostruct-align/1nfn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nfn/nostruct-align/1nfn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21806/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.968872 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nfp id: 1nfp alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nfp/nostruct-align/1nfp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nfp/nostruct-align/1nfp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nfp/nostruct-align/1nfp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7687/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.045898 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nftA id: 1nftA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nftA/nostruct-align/1nftA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nftA/nostruct-align/1nftA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nftA/nostruct-align/1nftA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25098/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.818970 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ng1 id: 1ng1 alignment found: /projects/compbio/experiments/models.97/pdb/1n/1ng1/nostruct-align/1ng1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1ng1/nostruct-align/1ng1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1ng1/nostruct-align/1ng1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18008/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.306885 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nglA id: 1nglA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nglA/nostruct-align/1nglA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nglA/nostruct-align/1nglA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nglA/nostruct-align/1nglA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9843/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.915894 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ngr id: 1ngr alignment found: /projects/compbio/experiments/models.97/pdb/1n/1ngr/nostruct-align/1ngr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1ngr/nostruct-align/1ngr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1ngr/nostruct-align/1ngr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22413/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.952881 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nhkL id: 1nhkL alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nhkL/nostruct-align/1nhkL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nhkL/nostruct-align/1nhkL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nhkL/nostruct-align/1nhkL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10994/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.210938 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nhp id: 1nhp alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nhp/nostruct-align/1nhp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nhp/nostruct-align/1nhp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nhp/nostruct-align/1nhp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25858/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.250854 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nhp_1 id: 1nhp_1 alignment found: /projects/compbio4/experiments/models.97/domains/1n/1nhp_1/nostruct-align/1nhp_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1n/1nhp_1/nostruct-align/1nhp_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1n/1nhp_1/nostruct-align/1nhp_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20855/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.730835 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nhp_2 id: 1nhp_2 alignment found: /projects/compbio4/experiments/models.97/domains/1n/1nhp_2/nostruct-align/1nhp_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1n/1nhp_2/nostruct-align/1nhp_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1n/1nhp_2/nostruct-align/1nhp_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2293/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.798950 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nhp_3 id: 1nhp_3 alignment found: /projects/compbio4/experiments/models.97/domains/1n/1nhp_3/nostruct-align/1nhp_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1n/1nhp_3/nostruct-align/1nhp_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1n/1nhp_3/nostruct-align/1nhp_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20517/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.018921 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nif id: 1nif alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nif/nostruct-align/1nif.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nif/nostruct-align/1nif.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nif/nostruct-align/1nif.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3940/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.633911 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nif_1 id: 1nif_1 alignment found: /projects/compbio4/experiments/models.97/domains/1n/1nif_1/nostruct-align/1nif_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1n/1nif_1/nostruct-align/1nif_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1n/1nif_1/nostruct-align/1nif_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4725/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.179932 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nif_2 id: 1nif_2 alignment found: /projects/compbio4/experiments/models.97/domains/1n/1nif_2/nostruct-align/1nif_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1n/1nif_2/nostruct-align/1nif_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1n/1nif_2/nostruct-align/1nif_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30110/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.323853 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nipA id: 1nipA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nipA/nostruct-align/1nipA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nipA/nostruct-align/1nipA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nipA/nostruct-align/1nipA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32692/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.827881 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nkd id: 1nkd alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nkd/nostruct-align/1nkd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nkd/nostruct-align/1nkd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nkd/nostruct-align/1nkd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20233/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.282959 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nkl id: 1nkl alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nkl/nostruct-align/1nkl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nkl/nostruct-align/1nkl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nkl/nostruct-align/1nkl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12842/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.514893 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nkr id: 1nkr alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nkr/nostruct-align/1nkr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nkr/nostruct-align/1nkr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nkr/nostruct-align/1nkr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-963/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.906860 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nksA id: 1nksA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nksA/nostruct-align/1nksA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nksA/nostruct-align/1nksA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nksA/nostruct-align/1nksA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15016/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.041992 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nlr id: 1nlr alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nlr/nostruct-align/1nlr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nlr/nostruct-align/1nlr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nlr/nostruct-align/1nlr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14065/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.811890 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nls id: 1nls alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nls/nostruct-align/1nls.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nls/nostruct-align/1nls.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nls/nostruct-align/1nls.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13945/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.592896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nmtA id: 1nmtA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nmtA/nostruct-align/1nmtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nmtA/nostruct-align/1nmtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nmtA/nostruct-align/1nmtA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25183/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.719971 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nnt id: 1nnt alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nnt/nostruct-align/1nnt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nnt/nostruct-align/1nnt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nnt/nostruct-align/1nnt.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21503/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.293823 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1noa id: 1noa alignment found: /projects/compbio/experiments/models.97/pdb/1n/1noa/nostruct-align/1noa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1noa/nostruct-align/1noa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1noa/nostruct-align/1noa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27086/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.233887 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nom id: 1nom alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nom/nostruct-align/1nom.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nom/nostruct-align/1nom.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nom/nostruct-align/1nom.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27785/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.143921 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nox id: 1nox alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nox/nostruct-align/1nox.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nox/nostruct-align/1nox.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nox/nostruct-align/1nox.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11201/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.271851 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nozA id: 1nozA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nozA/nostruct-align/1nozA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nozA/nostruct-align/1nozA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nozA/nostruct-align/1nozA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12704/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.006836 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1np1A id: 1np1A alignment found: /projects/compbio/experiments/models.97/pdb/1n/1np1A/nostruct-align/1np1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1np1A/nostruct-align/1np1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1np1A/nostruct-align/1np1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-736/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.791870 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1npk id: 1npk alignment found: /projects/compbio/experiments/models.97/pdb/1n/1npk/nostruct-align/1npk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1npk/nostruct-align/1npk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1npk/nostruct-align/1npk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21373/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.165894 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1npoA id: 1npoA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1npoA/nostruct-align/1npoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1npoA/nostruct-align/1npoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1npoA/nostruct-align/1npoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29779/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.169922 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1npoC id: 1npoC alignment found: /projects/compbio/experiments/models.97/pdb/1n/1npoC/nostruct-align/1npoC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1npoC/nostruct-align/1npoC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1npoC/nostruct-align/1npoC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27047/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.157837 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1npsA id: 1npsA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1npsA/nostruct-align/1npsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1npsA/nostruct-align/1npsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1npsA/nostruct-align/1npsA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18352/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.409912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nscA id: 1nscA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nscA/nostruct-align/1nscA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nscA/nostruct-align/1nscA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nscA/nostruct-align/1nscA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19960/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.253906 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nseA id: 1nseA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nseA/nostruct-align/1nseA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nseA/nostruct-align/1nseA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nseA/nostruct-align/1nseA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.251831 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nsgB id: 1nsgB alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nsgB/nostruct-align/1nsgB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nsgB/nostruct-align/1nsgB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nsgB/nostruct-align/1nsgB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28866/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.261841 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nsj id: 1nsj alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nsj/nostruct-align/1nsj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nsj/nostruct-align/1nsj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nsj/nostruct-align/1nsj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-204/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.686890 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nstA id: 1nstA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nstA/nostruct-align/1nstA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nstA/nostruct-align/1nstA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nstA/nostruct-align/1nstA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19734/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.237915 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ntcA id: 1ntcA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1ntcA/nostruct-align/1ntcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1ntcA/nostruct-align/1ntcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1ntcA/nostruct-align/1ntcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31450/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.549927 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ntn id: 1ntn alignment found: /projects/compbio/experiments/models.97/pdb/1n/1ntn/nostruct-align/1ntn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1ntn/nostruct-align/1ntn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1ntn/nostruct-align/1ntn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24511/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.741943 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ntr id: 1ntr alignment found: /projects/compbio/experiments/models.97/pdb/1n/1ntr/nostruct-align/1ntr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1ntr/nostruct-align/1ntr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1ntr/nostruct-align/1ntr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21205/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.298828 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nubA id: 1nubA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nubA/nostruct-align/1nubA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nubA/nostruct-align/1nubA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nubA/nostruct-align/1nubA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29220/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.630859 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nukA id: 1nukA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nukA/nostruct-align/1nukA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nukA/nostruct-align/1nukA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nukA/nostruct-align/1nukA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21558/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.404907 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nulA id: 1nulA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nulA/nostruct-align/1nulA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nulA/nostruct-align/1nulA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nulA/nostruct-align/1nulA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14867/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.412842 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nwpA id: 1nwpA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nwpA/nostruct-align/1nwpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nwpA/nostruct-align/1nwpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nwpA/nostruct-align/1nwpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25515/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.145996 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nxb id: 1nxb alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nxb/nostruct-align/1nxb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nxb/nostruct-align/1nxb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nxb/nostruct-align/1nxb.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11968/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.648926 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1nzyA id: 1nzyA alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nzyA/nostruct-align/1nzyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nzyA/nostruct-align/1nzyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1n/1nzyA/nostruct-align/1nzyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24335/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.119873 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1oaa id: 1oaa alignment found: /projects/compbio/experiments/models.97/pdb/1o/1oaa/nostruct-align/1oaa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1oaa/nostruct-align/1oaa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1oaa/nostruct-align/1oaa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21603/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.787842 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1oacA id: 1oacA alignment found: /projects/compbio/experiments/models.97/pdb/1o/1oacA/nostruct-align/1oacA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1oacA/nostruct-align/1oacA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1oacA/nostruct-align/1oacA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22725/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.359863 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1oacA_1 id: 1oacA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1o/1oacA_1/nostruct-align/1oacA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1o/1oacA_1/nostruct-align/1oacA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1o/1oacA_1/nostruct-align/1oacA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11734/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.111816 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1oacA_2 id: 1oacA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1o/1oacA_2/nostruct-align/1oacA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1o/1oacA_2/nostruct-align/1oacA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1o/1oacA_2/nostruct-align/1oacA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24668/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.336914 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1oacA_3 id: 1oacA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1o/1oacA_3/nostruct-align/1oacA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1o/1oacA_3/nostruct-align/1oacA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1o/1oacA_3/nostruct-align/1oacA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9589/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.283813 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1oacA_4 id: 1oacA_4 alignment found: /projects/compbio4/experiments/models.97/domains/1o/1oacA_4/nostruct-align/1oacA_4.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1o/1oacA_4/nostruct-align/1oacA_4.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1o/1oacA_4/nostruct-align/1oacA_4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5783/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.654907 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1oasA id: 1oasA alignment found: /projects/compbio/experiments/models.97/pdb/1o/1oasA/nostruct-align/1oasA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1oasA/nostruct-align/1oasA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1oasA/nostruct-align/1oasA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18185/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.219849 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1oatA id: 1oatA alignment found: /projects/compbio/experiments/models.97/pdb/1o/1oatA/nostruct-align/1oatA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1oatA/nostruct-align/1oatA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1oatA/nostruct-align/1oatA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27148/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.312866 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1obpA id: 1obpA alignment found: /projects/compbio/experiments/models.97/pdb/1o/1obpA/nostruct-align/1obpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1obpA/nostruct-align/1obpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1obpA/nostruct-align/1obpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13292/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.691895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1obwA id: 1obwA alignment found: /projects/compbio/experiments/models.97/pdb/1o/1obwA/nostruct-align/1obwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1obwA/nostruct-align/1obwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1obwA/nostruct-align/1obwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17664/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.314941 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1occG id: 1occG alignment found: /projects/compbio/experiments/models.97/pdb/1o/1occG/nostruct-align/1occG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1occG/nostruct-align/1occG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1occG/nostruct-align/1occG.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2552/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.024902 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ocrC id: 1ocrC alignment found: /projects/compbio/experiments/models.97/pdb/1o/1ocrC/nostruct-align/1ocrC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1ocrC/nostruct-align/1ocrC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1ocrC/nostruct-align/1ocrC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5255/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.496826 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ocrD id: 1ocrD alignment found: /projects/compbio/experiments/models.97/pdb/1o/1ocrD/nostruct-align/1ocrD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1ocrD/nostruct-align/1ocrD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1ocrD/nostruct-align/1ocrD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12863/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.476929 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1octC id: 1octC alignment found: /projects/compbio/experiments/models.97/pdb/1o/1octC/nostruct-align/1octC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1octC/nostruct-align/1octC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1octC/nostruct-align/1octC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16179/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.892944 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1octC_1 id: 1octC_1 alignment found: /projects/compbio4/experiments/models.97/domains/1o/1octC_1/nostruct-align/1octC_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1o/1octC_1/nostruct-align/1octC_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1o/1octC_1/nostruct-align/1octC_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5594/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.803833 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1octC_2 id: 1octC_2 alignment found: /projects/compbio4/experiments/models.97/domains/1o/1octC_2/nostruct-align/1octC_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1o/1octC_2/nostruct-align/1octC_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1o/1octC_2/nostruct-align/1octC_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18657/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.936890 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ofgA id: 1ofgA alignment found: /projects/compbio/experiments/models.97/pdb/1o/1ofgA/nostruct-align/1ofgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1ofgA/nostruct-align/1ofgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1ofgA/nostruct-align/1ofgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19467/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.068848 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ofv id: 1ofv alignment found: /projects/compbio/experiments/models.97/pdb/1o/1ofv/nostruct-align/1ofv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1ofv/nostruct-align/1ofv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1ofv/nostruct-align/1ofv.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7178/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.888916 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ois id: 1ois alignment found: /projects/compbio/experiments/models.97/pdb/1o/1ois/nostruct-align/1ois.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1ois/nostruct-align/1ois.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1ois/nostruct-align/1ois.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32759/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.661987 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1olgA id: 1olgA alignment found: /projects/compbio/experiments/models.97/pdb/1o/1olgA/nostruct-align/1olgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1olgA/nostruct-align/1olgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1olgA/nostruct-align/1olgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20548/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.540894 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1om2A id: 1om2A alignment found: /projects/compbio/experiments/models.97/pdb/1o/1om2A/nostruct-align/1om2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1om2A/nostruct-align/1om2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1om2A/nostruct-align/1om2A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-751/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.715942 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1omc id: 1omc alignment found: /projects/compbio/experiments/models.97/pdb/1o/1omc/nostruct-align/1omc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1omc/nostruct-align/1omc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1omc/nostruct-align/1omc.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-9679/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.493896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1omn id: 1omn alignment found: /projects/compbio/experiments/models.97/pdb/1o/1omn/nostruct-align/1omn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1omn/nostruct-align/1omn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1omn/nostruct-align/1omn.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-11627/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.781860 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1omp id: 1omp alignment found: /projects/compbio/experiments/models.97/pdb/1o/1omp/nostruct-align/1omp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1omp/nostruct-align/1omp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1omp/nostruct-align/1omp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1881/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.301880 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1onc id: 1onc alignment found: /projects/compbio/experiments/models.97/pdb/1o/1onc/nostruct-align/1onc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1onc/nostruct-align/1onc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1onc/nostruct-align/1onc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14679/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.068848 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1oneA id: 1oneA alignment found: /projects/compbio/experiments/models.97/pdb/1o/1oneA/nostruct-align/1oneA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1oneA/nostruct-align/1oneA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1oneA/nostruct-align/1oneA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-893/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -414.254944 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1onrA id: 1onrA alignment found: /projects/compbio/experiments/models.97/pdb/1o/1onrA/nostruct-align/1onrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1onrA/nostruct-align/1onrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1onrA/nostruct-align/1onrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11628/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.447876 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1opbA id: 1opbA alignment found: /projects/compbio/experiments/models.97/pdb/1o/1opbA/nostruct-align/1opbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1opbA/nostruct-align/1opbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1opbA/nostruct-align/1opbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2835/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.550903 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1opc id: 1opc alignment found: /projects/compbio/experiments/models.97/pdb/1o/1opc/nostruct-align/1opc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1opc/nostruct-align/1opc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1opc/nostruct-align/1opc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20222/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.948975 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1opd id: 1opd alignment found: /projects/compbio/experiments/models.97/pdb/1o/1opd/nostruct-align/1opd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1opd/nostruct-align/1opd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1opd/nostruct-align/1opd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12088/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.463989 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1opp id: 1opp alignment found: /projects/compbio/experiments/models.97/pdb/1o/1opp/nostruct-align/1opp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1opp/nostruct-align/1opp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1opp/nostruct-align/1opp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18078/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.898926 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1opr id: 1opr alignment found: /projects/compbio/experiments/models.97/pdb/1o/1opr/nostruct-align/1opr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1opr/nostruct-align/1opr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1opr/nostruct-align/1opr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6700/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.959961 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1opy id: 1opy alignment found: /projects/compbio/experiments/models.97/pdb/1o/1opy/nostruct-align/1opy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1opy/nostruct-align/1opy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1opy/nostruct-align/1opy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1554/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.454956 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ora_1 id: 1ora_1 alignment found: /projects/compbio4/experiments/models.97/domains/1o/1ora_1/nostruct-align/1ora_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1o/1ora_1/nostruct-align/1ora_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1o/1ora_1/nostruct-align/1ora_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27357/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.638794 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ora_2 id: 1ora_2 alignment found: /projects/compbio4/experiments/models.97/domains/1o/1ora_2/nostruct-align/1ora_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1o/1ora_2/nostruct-align/1ora_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1o/1ora_2/nostruct-align/1ora_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21101/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.902954 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1orc id: 1orc alignment found: /projects/compbio/experiments/models.97/pdb/1o/1orc/nostruct-align/1orc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1orc/nostruct-align/1orc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1orc/nostruct-align/1orc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16023/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.079956 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ordA id: 1ordA alignment found: /projects/compbio/experiments/models.97/pdb/1o/1ordA/nostruct-align/1ordA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1ordA/nostruct-align/1ordA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1ordA/nostruct-align/1ordA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31949/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.515869 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ordA_1 id: 1ordA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1o/1ordA_1/nostruct-align/1ordA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1o/1ordA_1/nostruct-align/1ordA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1o/1ordA_1/nostruct-align/1ordA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8616/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.723877 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ordA_2 id: 1ordA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1o/1ordA_2/nostruct-align/1ordA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1o/1ordA_2/nostruct-align/1ordA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1o/1ordA_2/nostruct-align/1ordA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5565/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.762817 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ordA_3 id: 1ordA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1o/1ordA_3/nostruct-align/1ordA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1o/1ordA_3/nostruct-align/1ordA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1o/1ordA_3/nostruct-align/1ordA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18659/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.771973 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1osa id: 1osa alignment found: /projects/compbio/experiments/models.97/pdb/1o/1osa/nostruct-align/1osa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1osa/nostruct-align/1osa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1osa/nostruct-align/1osa.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24813/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.579834 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ospH id: 1ospH alignment found: /projects/compbio/experiments/models.97/pdb/1o/1ospH/nostruct-align/1ospH.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1ospH/nostruct-align/1ospH.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1ospH/nostruct-align/1ospH.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30444/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.216919 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ospL id: 1ospL alignment found: /projects/compbio/experiments/models.97/pdb/1o/1ospL/nostruct-align/1ospL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1ospL/nostruct-align/1ospL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1ospL/nostruct-align/1ospL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14810/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.668823 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ospO id: 1ospO alignment found: /projects/compbio/experiments/models.97/pdb/1o/1ospO/nostruct-align/1ospO.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1ospO/nostruct-align/1ospO.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1ospO/nostruct-align/1ospO.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30333/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.693970 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1otcA id: 1otcA alignment found: /projects/compbio/experiments/models.97/pdb/1o/1otcA/nostruct-align/1otcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1otcA/nostruct-align/1otcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1otcA/nostruct-align/1otcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21770/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.469971 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1otcB id: 1otcB alignment found: /projects/compbio/experiments/models.97/pdb/1o/1otcB/nostruct-align/1otcB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1otcB/nostruct-align/1otcB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1otcB/nostruct-align/1otcB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20072/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.596924 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1otfA id: 1otfA alignment found: /projects/compbio/experiments/models.97/pdb/1o/1otfA/nostruct-align/1otfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1otfA/nostruct-align/1otfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1otfA/nostruct-align/1otfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12173/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.678955 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1otgA id: 1otgA alignment found: /projects/compbio/experiments/models.97/pdb/1o/1otgA/nostruct-align/1otgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1otgA/nostruct-align/1otgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1otgA/nostruct-align/1otgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26841/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.472900 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1othA id: 1othA alignment found: /projects/compbio/experiments/models.97/pdb/1o/1othA/nostruct-align/1othA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1othA/nostruct-align/1othA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1othA/nostruct-align/1othA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29937/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.666870 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ounA id: 1ounA alignment found: /projects/compbio/experiments/models.97/pdb/1o/1ounA/nostruct-align/1ounA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1ounA/nostruct-align/1ounA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1ounA/nostruct-align/1ounA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24742/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.314819 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ovaA id: 1ovaA alignment found: /projects/compbio/experiments/models.97/pdb/1o/1ovaA/nostruct-align/1ovaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1ovaA/nostruct-align/1ovaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1ovaA/nostruct-align/1ovaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-706/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.854858 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1oxa id: 1oxa alignment found: /projects/compbio/experiments/models.97/pdb/1o/1oxa/nostruct-align/1oxa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1oxa/nostruct-align/1oxa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1oxa/nostruct-align/1oxa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30228/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.587891 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1oya id: 1oya alignment found: /projects/compbio/experiments/models.97/pdb/1o/1oya/nostruct-align/1oya.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1oya/nostruct-align/1oya.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1oya/nostruct-align/1oya.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15688/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.250854 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1oyc id: 1oyc alignment found: /projects/compbio/experiments/models.97/pdb/1o/1oyc/nostruct-align/1oyc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1oyc/nostruct-align/1oyc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1o/1oyc/nostruct-align/1oyc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13530/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.785889 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1p04A id: 1p04A alignment found: /projects/compbio/experiments/models.97/pdb/1p/1p04A/nostruct-align/1p04A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1p04A/nostruct-align/1p04A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1p04A/nostruct-align/1p04A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-11015/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.575928 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1p32A id: 1p32A alignment found: /projects/compbio/experiments/models.97/pdb/1p/1p32A/nostruct-align/1p32A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1p32A/nostruct-align/1p32A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1p32A/nostruct-align/1p32A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2584/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.023804 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1p32C id: 1p32C alignment found: /projects/compbio/experiments/models.97/pdb/1p/1p32C/nostruct-align/1p32C.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1p32C/nostruct-align/1p32C.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1p32C/nostruct-align/1p32C.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15556/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.917847 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1p35A id: 1p35A alignment found: /projects/compbio/experiments/models.97/pdb/1p/1p35A/nostruct-align/1p35A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1p35A/nostruct-align/1p35A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1p35A/nostruct-align/1p35A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22864/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.921875 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1paa id: 1paa alignment found: /projects/compbio/experiments/models.97/pdb/1p/1paa/nostruct-align/1paa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1paa/nostruct-align/1paa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1paa/nostruct-align/1paa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18365/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.056885 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pah id: 1pah alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pah/nostruct-align/1pah.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pah/nostruct-align/1pah.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pah/nostruct-align/1pah.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31480/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.652954 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pamA id: 1pamA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pamA/nostruct-align/1pamA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pamA/nostruct-align/1pamA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pamA/nostruct-align/1pamA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7079/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.964966 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1parA id: 1parA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1parA/nostruct-align/1parA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1parA/nostruct-align/1parA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1parA/nostruct-align/1parA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2499/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.021973 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pauA id: 1pauA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pauA/nostruct-align/1pauA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pauA/nostruct-align/1pauA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pauA/nostruct-align/1pauA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27334/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.139893 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pauB id: 1pauB alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pauB/nostruct-align/1pauB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pauB/nostruct-align/1pauB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pauB/nostruct-align/1pauB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30427/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.585938 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1paz id: 1paz alignment found: /projects/compbio/experiments/models.97/pdb/1p/1paz/nostruct-align/1paz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1paz/nostruct-align/1paz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1paz/nostruct-align/1paz.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22073/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.024902 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pba id: 1pba alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pba/nostruct-align/1pba.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pba/nostruct-align/1pba.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pba/nostruct-align/1pba.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28996/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.818970 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pbe id: 1pbe alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pbe/nostruct-align/1pbe.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pbe/nostruct-align/1pbe.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pbe/nostruct-align/1pbe.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23153/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.037964 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pbe_1 id: 1pbe_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pbe_1/nostruct-align/1pbe_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pbe_1/nostruct-align/1pbe_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pbe_1/nostruct-align/1pbe_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7154/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.859863 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pbe_2 id: 1pbe_2 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pbe_2/nostruct-align/1pbe_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pbe_2/nostruct-align/1pbe_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pbe_2/nostruct-align/1pbe_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8096/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.521851 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pbgA id: 1pbgA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pbgA/nostruct-align/1pbgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pbgA/nostruct-align/1pbgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pbgA/nostruct-align/1pbgA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-13005/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.695801 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pbn id: 1pbn alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pbn/nostruct-align/1pbn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pbn/nostruct-align/1pbn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pbn/nostruct-align/1pbn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32579/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.490967 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pbp id: 1pbp alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pbp/nostruct-align/1pbp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pbp/nostruct-align/1pbp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pbp/nostruct-align/1pbp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19256/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.404907 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pbv id: 1pbv alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pbv/nostruct-align/1pbv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pbv/nostruct-align/1pbv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pbv/nostruct-align/1pbv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7016/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.101929 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pbwA id: 1pbwA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pbwA/nostruct-align/1pbwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pbwA/nostruct-align/1pbwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pbwA/nostruct-align/1pbwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15966/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.938843 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pce id: 1pce alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pce/nostruct-align/1pce.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pce/nostruct-align/1pce.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pce/nostruct-align/1pce.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27944/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.909912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pcfA id: 1pcfA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pcfA/nostruct-align/1pcfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pcfA/nostruct-align/1pcfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pcfA/nostruct-align/1pcfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13482/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.158813 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pch id: 1pch alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pch/nostruct-align/1pch.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pch/nostruct-align/1pch.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pch/nostruct-align/1pch.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16622/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.519897 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pcl id: 1pcl alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pcl/nostruct-align/1pcl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pcl/nostruct-align/1pcl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pcl/nostruct-align/1pcl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17926/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.030884 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pd21 id: 1pd21 alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pd21/nostruct-align/1pd21.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pd21/nostruct-align/1pd21.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pd21/nostruct-align/1pd21.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26063/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.069824 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pda id: 1pda alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pda/nostruct-align/1pda.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pda/nostruct-align/1pda.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pda/nostruct-align/1pda.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6906/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.916870 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pda_1 id: 1pda_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pda_1/nostruct-align/1pda_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pda_1/nostruct-align/1pda_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pda_1/nostruct-align/1pda_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23239/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.905884 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pda_2 id: 1pda_2 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pda_2/nostruct-align/1pda_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pda_2/nostruct-align/1pda_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pda_2/nostruct-align/1pda_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9026/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.443848 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pdc id: 1pdc alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pdc/nostruct-align/1pdc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pdc/nostruct-align/1pdc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pdc/nostruct-align/1pdc.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22375/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.402954 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pdgA id: 1pdgA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pdgA/nostruct-align/1pdgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pdgA/nostruct-align/1pdgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pdgA/nostruct-align/1pdgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9382/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.021973 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pdgC id: 1pdgC alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pdgC/nostruct-align/1pdgC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pdgC/nostruct-align/1pdgC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pdgC/nostruct-align/1pdgC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32701/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.053833 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pdkB id: 1pdkB alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pdkB/nostruct-align/1pdkB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pdkB/nostruct-align/1pdkB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pdkB/nostruct-align/1pdkB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23402/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.359863 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pdnC id: 1pdnC alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pdnC/nostruct-align/1pdnC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pdnC/nostruct-align/1pdnC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pdnC/nostruct-align/1pdnC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19556/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.986938 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pdo id: 1pdo alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pdo/nostruct-align/1pdo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pdo/nostruct-align/1pdo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pdo/nostruct-align/1pdo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7308/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.656982 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pdr id: 1pdr alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pdr/nostruct-align/1pdr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pdr/nostruct-align/1pdr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pdr/nostruct-align/1pdr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27686/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.268799 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pea id: 1pea alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pea/nostruct-align/1pea.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pea/nostruct-align/1pea.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pea/nostruct-align/1pea.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18963/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.864990 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pedA id: 1pedA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pedA/nostruct-align/1pedA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pedA/nostruct-align/1pedA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pedA/nostruct-align/1pedA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8953/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.649902 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1peh id: 1peh alignment found: /projects/compbio/experiments/models.97/pdb/1p/1peh/nostruct-align/1peh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1peh/nostruct-align/1peh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1peh/nostruct-align/1peh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24203/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.232910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pex id: 1pex alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pex/nostruct-align/1pex.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pex/nostruct-align/1pex.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pex/nostruct-align/1pex.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31449/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.802856 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pfiA id: 1pfiA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pfiA/nostruct-align/1pfiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pfiA/nostruct-align/1pfiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pfiA/nostruct-align/1pfiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14695/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.226929 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pfkA id: 1pfkA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pfkA/nostruct-align/1pfkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pfkA/nostruct-align/1pfkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pfkA/nostruct-align/1pfkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17776/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.910889 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pfo id: 1pfo alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pfo/nostruct-align/1pfo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pfo/nostruct-align/1pfo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pfo/nostruct-align/1pfo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19350/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.534912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pfsA id: 1pfsA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pfsA/nostruct-align/1pfsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pfsA/nostruct-align/1pfsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pfsA/nostruct-align/1pfsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5841/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.901855 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pft id: 1pft alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pft/nostruct-align/1pft.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pft/nostruct-align/1pft.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pft/nostruct-align/1pft.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28605/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.817871 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pgs id: 1pgs alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pgs/nostruct-align/1pgs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pgs/nostruct-align/1pgs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pgs/nostruct-align/1pgs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13743/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.889893 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pgs_1 id: 1pgs_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pgs_1/nostruct-align/1pgs_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pgs_1/nostruct-align/1pgs_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pgs_1/nostruct-align/1pgs_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16624/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.919800 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pgs_2 id: 1pgs_2 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pgs_2/nostruct-align/1pgs_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pgs_2/nostruct-align/1pgs_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pgs_2/nostruct-align/1pgs_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24551/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.671875 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pgtA id: 1pgtA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pgtA/nostruct-align/1pgtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pgtA/nostruct-align/1pgtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pgtA/nostruct-align/1pgtA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3200/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.025879 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1phb id: 1phb alignment found: /projects/compbio/experiments/models.97/pdb/1p/1phb/nostruct-align/1phb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1phb/nostruct-align/1phb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1phb/nostruct-align/1phb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13481/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.609863 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1phd id: 1phd alignment found: /projects/compbio/experiments/models.97/pdb/1p/1phd/nostruct-align/1phd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1phd/nostruct-align/1phd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1phd/nostruct-align/1phd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30407/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.796875 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1phg id: 1phg alignment found: /projects/compbio/experiments/models.97/pdb/1p/1phg/nostruct-align/1phg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1phg/nostruct-align/1phg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1phg/nostruct-align/1phg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8241/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.934814 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1phm id: 1phm alignment found: /projects/compbio/experiments/models.97/pdb/1p/1phm/nostruct-align/1phm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1phm/nostruct-align/1phm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1phm/nostruct-align/1phm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17442/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.831909 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1phnA id: 1phnA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1phnA/nostruct-align/1phnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1phnA/nostruct-align/1phnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1phnA/nostruct-align/1phnA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32569/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.229858 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1phnB id: 1phnB alignment found: /projects/compbio/experiments/models.97/pdb/1p/1phnB/nostruct-align/1phnB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1phnB/nostruct-align/1phnB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1phnB/nostruct-align/1phnB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11002/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.267944 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1php id: 1php alignment found: /projects/compbio/experiments/models.97/pdb/1p/1php/nostruct-align/1php.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1php/nostruct-align/1php.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1php/nostruct-align/1php.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29345/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.473877 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1phr id: 1phr alignment found: /projects/compbio/experiments/models.97/pdb/1p/1phr/nostruct-align/1phr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1phr/nostruct-align/1phr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1phr/nostruct-align/1phr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-130/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.779907 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pht id: 1pht alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pht/nostruct-align/1pht.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pht/nostruct-align/1pht.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pht/nostruct-align/1pht.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-8327/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.635010 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pi2 id: 1pi2 alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pi2/nostruct-align/1pi2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pi2/nostruct-align/1pi2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pi2/nostruct-align/1pi2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19659/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.341919 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pidA id: 1pidA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pidA/nostruct-align/1pidA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pidA/nostruct-align/1pidA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pidA/nostruct-align/1pidA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16968/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.031860 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pidB id: 1pidB alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pidB/nostruct-align/1pidB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pidB/nostruct-align/1pidB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pidB/nostruct-align/1pidB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18724/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.058838 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pii id: 1pii alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pii/nostruct-align/1pii.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pii/nostruct-align/1pii.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pii/nostruct-align/1pii.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16736/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.443970 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pii_1 id: 1pii_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pii_1/nostruct-align/1pii_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pii_1/nostruct-align/1pii_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pii_1/nostruct-align/1pii_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16103/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.110840 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pii_2 id: 1pii_2 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pii_2/nostruct-align/1pii_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pii_2/nostruct-align/1pii_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pii_2/nostruct-align/1pii_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8427/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.157959 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pij id: 1pij alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pij/nostruct-align/1pij.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pij/nostruct-align/1pij.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pij/nostruct-align/1pij.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10316/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.777832 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pil id: 1pil alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pil/nostruct-align/1pil.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pil/nostruct-align/1pil.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pil/nostruct-align/1pil.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1102/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.140869 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pinA id: 1pinA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pinA/nostruct-align/1pinA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pinA/nostruct-align/1pinA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pinA/nostruct-align/1pinA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21617/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.412842 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pioA id: 1pioA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pioA/nostruct-align/1pioA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pioA/nostruct-align/1pioA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pioA/nostruct-align/1pioA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5922/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.234985 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pjcA id: 1pjcA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pjcA/nostruct-align/1pjcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pjcA/nostruct-align/1pjcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pjcA/nostruct-align/1pjcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11355/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.225952 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pjr id: 1pjr alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pjr/nostruct-align/1pjr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pjr/nostruct-align/1pjr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pjr/nostruct-align/1pjr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11038/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.954956 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pk4 id: 1pk4 alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pk4/nostruct-align/1pk4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pk4/nostruct-align/1pk4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pk4/nostruct-align/1pk4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30139/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.193970 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pkp id: 1pkp alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pkp/nostruct-align/1pkp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pkp/nostruct-align/1pkp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pkp/nostruct-align/1pkp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16241/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.134888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pkp_1 id: 1pkp_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pkp_1/nostruct-align/1pkp_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pkp_1/nostruct-align/1pkp_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pkp_1/nostruct-align/1pkp_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23546/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.753906 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pkp_2 id: 1pkp_2 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pkp_2/nostruct-align/1pkp_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pkp_2/nostruct-align/1pkp_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pkp_2/nostruct-align/1pkp_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2588/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.827881 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pkyA_1 id: 1pkyA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pkyA_1/nostruct-align/1pkyA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pkyA_1/nostruct-align/1pkyA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pkyA_1/nostruct-align/1pkyA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9802/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.841919 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pkyA_2 id: 1pkyA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pkyA_2/nostruct-align/1pkyA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pkyA_2/nostruct-align/1pkyA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pkyA_2/nostruct-align/1pkyA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13530/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.484863 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pkyA_3 id: 1pkyA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pkyA_3/nostruct-align/1pkyA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pkyA_3/nostruct-align/1pkyA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pkyA_3/nostruct-align/1pkyA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32106/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.336914 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1plc id: 1plc alignment found: /projects/compbio/experiments/models.97/pdb/1p/1plc/nostruct-align/1plc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1plc/nostruct-align/1plc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1plc/nostruct-align/1plc.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10086/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.732788 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1plq id: 1plq alignment found: /projects/compbio/experiments/models.97/pdb/1p/1plq/nostruct-align/1plq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1plq/nostruct-align/1plq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1plq/nostruct-align/1plq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11056/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.104858 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1plq_1 id: 1plq_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1plq_1/nostruct-align/1plq_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1plq_1/nostruct-align/1plq_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1plq_1/nostruct-align/1plq_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32161/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.711792 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1plq_2 id: 1plq_2 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1plq_2/nostruct-align/1plq_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1plq_2/nostruct-align/1plq_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1plq_2/nostruct-align/1plq_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28943/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.915894 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1plr id: 1plr alignment found: /projects/compbio/experiments/models.97/pdb/1p/1plr/nostruct-align/1plr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1plr/nostruct-align/1plr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1plr/nostruct-align/1plr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4609/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.106934 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pls id: 1pls alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pls/nostruct-align/1pls.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pls/nostruct-align/1pls.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pls/nostruct-align/1pls.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29367/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.840942 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pmaA id: 1pmaA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pmaA/nostruct-align/1pmaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pmaA/nostruct-align/1pmaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pmaA/nostruct-align/1pmaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4144/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.186890 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pmaP id: 1pmaP alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pmaP/nostruct-align/1pmaP.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pmaP/nostruct-align/1pmaP.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pmaP/nostruct-align/1pmaP.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5597/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.343872 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pmc id: 1pmc alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pmc/nostruct-align/1pmc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pmc/nostruct-align/1pmc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pmc/nostruct-align/1pmc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14738/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.967896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pmd id: 1pmd alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pmd/nostruct-align/1pmd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pmd/nostruct-align/1pmd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pmd/nostruct-align/1pmd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22397/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.059937 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pmi id: 1pmi alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pmi/nostruct-align/1pmi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pmi/nostruct-align/1pmi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pmi/nostruct-align/1pmi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15036/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.325928 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pmy id: 1pmy alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pmy/nostruct-align/1pmy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pmy/nostruct-align/1pmy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pmy/nostruct-align/1pmy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9444/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.999878 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pnbA id: 1pnbA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pnbA/nostruct-align/1pnbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pnbA/nostruct-align/1pnbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pnbA/nostruct-align/1pnbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10398/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.885864 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pnbB id: 1pnbB alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pnbB/nostruct-align/1pnbB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pnbB/nostruct-align/1pnbB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pnbB/nostruct-align/1pnbB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19440/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.861816 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pne id: 1pne alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pne/nostruct-align/1pne.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pne/nostruct-align/1pne.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pne/nostruct-align/1pne.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23764/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.334839 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pnh id: 1pnh alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pnh/nostruct-align/1pnh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pnh/nostruct-align/1pnh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pnh/nostruct-align/1pnh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12644/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.146973 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pnkA id: 1pnkA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pnkA/nostruct-align/1pnkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pnkA/nostruct-align/1pnkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pnkA/nostruct-align/1pnkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8483/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.014893 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pnkB id: 1pnkB alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pnkB/nostruct-align/1pnkB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pnkB/nostruct-align/1pnkB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pnkB/nostruct-align/1pnkB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7989/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.559937 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pnrA_1 id: 1pnrA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pnrA_1/nostruct-align/1pnrA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pnrA_1/nostruct-align/1pnrA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pnrA_1/nostruct-align/1pnrA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32222/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.073975 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pnrA_2 id: 1pnrA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pnrA_2/nostruct-align/1pnrA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pnrA_2/nostruct-align/1pnrA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pnrA_2/nostruct-align/1pnrA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2378/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.357910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1poa id: 1poa alignment found: /projects/compbio/experiments/models.97/pdb/1p/1poa/nostruct-align/1poa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1poa/nostruct-align/1poa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1poa/nostruct-align/1poa.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23304/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.555908 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1poc id: 1poc alignment found: /projects/compbio/experiments/models.97/pdb/1p/1poc/nostruct-align/1poc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1poc/nostruct-align/1poc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1poc/nostruct-align/1poc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19594/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.093872 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1poh id: 1poh alignment found: /projects/compbio/experiments/models.97/pdb/1p/1poh/nostruct-align/1poh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1poh/nostruct-align/1poh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1poh/nostruct-align/1poh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15919/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.278809 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1poiA id: 1poiA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1poiA/nostruct-align/1poiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1poiA/nostruct-align/1poiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1poiA/nostruct-align/1poiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23753/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.233887 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1poiB id: 1poiB alignment found: /projects/compbio/experiments/models.97/pdb/1p/1poiB/nostruct-align/1poiB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1poiB/nostruct-align/1poiB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1poiB/nostruct-align/1poiB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12916/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.844849 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ponA id: 1ponA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1ponA/nostruct-align/1ponA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1ponA/nostruct-align/1ponA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1ponA/nostruct-align/1ponA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30151/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.547852 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ponB id: 1ponB alignment found: /projects/compbio/experiments/models.97/pdb/1p/1ponB/nostruct-align/1ponB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1ponB/nostruct-align/1ponB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1ponB/nostruct-align/1ponB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30784/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.564941 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pot id: 1pot alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pot/nostruct-align/1pot.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pot/nostruct-align/1pot.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pot/nostruct-align/1pot.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1647/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.036865 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pou id: 1pou alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pou/nostruct-align/1pou.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pou/nostruct-align/1pou.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pou/nostruct-align/1pou.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1948/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.936890 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pov1 id: 1pov1 alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pov1/nostruct-align/1pov1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pov1/nostruct-align/1pov1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pov1/nostruct-align/1pov1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12357/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.421875 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1poxA id: 1poxA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1poxA/nostruct-align/1poxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1poxA/nostruct-align/1poxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1poxA/nostruct-align/1poxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1786/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.325928 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1poxA_1 id: 1poxA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1poxA_1/nostruct-align/1poxA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1poxA_1/nostruct-align/1poxA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1poxA_1/nostruct-align/1poxA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10951/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.607910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1poxA_2 id: 1poxA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1poxA_2/nostruct-align/1poxA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1poxA_2/nostruct-align/1poxA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1poxA_2/nostruct-align/1poxA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20944/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.993896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1poxA_3 id: 1poxA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1poxA_3/nostruct-align/1poxA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1poxA_3/nostruct-align/1poxA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1poxA_3/nostruct-align/1poxA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13996/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.205933 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ppbL id: 1ppbL alignment found: /projects/compbio/experiments/models.97/pdb/1p/1ppbL/nostruct-align/1ppbL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1ppbL/nostruct-align/1ppbL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1ppbL/nostruct-align/1ppbL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16460/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.418823 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ppfE id: 1ppfE alignment found: /projects/compbio/experiments/models.97/pdb/1p/1ppfE/nostruct-align/1ppfE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1ppfE/nostruct-align/1ppfE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1ppfE/nostruct-align/1ppfE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16039/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.398926 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ppi_1 id: 1ppi_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1ppi_1/nostruct-align/1ppi_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1ppi_1/nostruct-align/1ppi_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1ppi_1/nostruct-align/1ppi_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25145/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.305908 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ppi_2 id: 1ppi_2 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1ppi_2/nostruct-align/1ppi_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1ppi_2/nostruct-align/1ppi_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1ppi_2/nostruct-align/1ppi_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8083/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.054810 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ppn id: 1ppn alignment found: /projects/compbio/experiments/models.97/pdb/1p/1ppn/nostruct-align/1ppn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1ppn/nostruct-align/1ppn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1ppn/nostruct-align/1ppn.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22954/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.669922 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pprM id: 1pprM alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pprM/nostruct-align/1pprM.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pprM/nostruct-align/1pprM.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pprM/nostruct-align/1pprM.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30391/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.572876 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ppt id: 1ppt alignment found: /projects/compbio/experiments/models.97/pdb/1p/1ppt/nostruct-align/1ppt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1ppt/nostruct-align/1ppt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1ppt/nostruct-align/1ppt.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13338/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.743896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1prcC id: 1prcC alignment found: /projects/compbio/experiments/models.97/pdb/1p/1prcC/nostruct-align/1prcC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1prcC/nostruct-align/1prcC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1prcC/nostruct-align/1prcC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16557/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.392944 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1prcH_1 id: 1prcH_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1prcH_1/nostruct-align/1prcH_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1prcH_1/nostruct-align/1prcH_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1prcH_1/nostruct-align/1prcH_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27833/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.712891 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1prc_1l1 id: 1prc_1l1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1prc_1l1/nostruct-align/1prc_1l1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1prc_1l1/nostruct-align/1prc_1l1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1prc_1l1/nostruct-align/1prc_1l1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18304/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.274902 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1preA id: 1preA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1preA/nostruct-align/1preA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1preA/nostruct-align/1preA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1preA/nostruct-align/1preA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26274/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.667847 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1preB id: 1preB alignment found: /projects/compbio/experiments/models.97/pdb/1p/1preB/nostruct-align/1preB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1preB/nostruct-align/1preB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1preB/nostruct-align/1preB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25371/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.458984 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1prhA_1 id: 1prhA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1prhA_1/nostruct-align/1prhA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1prhA_1/nostruct-align/1prhA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1prhA_1/nostruct-align/1prhA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32089/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.802856 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1prhA_2 id: 1prhA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1prhA_2/nostruct-align/1prhA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1prhA_2/nostruct-align/1prhA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1prhA_2/nostruct-align/1prhA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25632/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.554932 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1prn id: 1prn alignment found: /projects/compbio/experiments/models.97/pdb/1p/1prn/nostruct-align/1prn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1prn/nostruct-align/1prn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1prn/nostruct-align/1prn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1613/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.362915 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1prr_1 id: 1prr_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1prr_1/nostruct-align/1prr_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1prr_1/nostruct-align/1prr_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1prr_1/nostruct-align/1prr_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21641/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.424927 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1prr_2 id: 1prr_2 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1prr_2/nostruct-align/1prr_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1prr_2/nostruct-align/1prr_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1prr_2/nostruct-align/1prr_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6921/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.296875 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1prs id: 1prs alignment found: /projects/compbio/experiments/models.97/pdb/1p/1prs/nostruct-align/1prs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1prs/nostruct-align/1prs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1prs/nostruct-align/1prs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.284912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1prtA id: 1prtA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1prtA/nostruct-align/1prtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1prtA/nostruct-align/1prtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1prtA/nostruct-align/1prtA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-4755/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.941895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1prtB_1 id: 1prtB_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1prtB_1/nostruct-align/1prtB_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1prtB_1/nostruct-align/1prtB_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1prtB_1/nostruct-align/1prtB_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28549/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.195923 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1prtB_2 id: 1prtB_2 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1prtB_2/nostruct-align/1prtB_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1prtB_2/nostruct-align/1prtB_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1prtB_2/nostruct-align/1prtB_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23671/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.476929 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1prtD id: 1prtD alignment found: /projects/compbio/experiments/models.97/pdb/1p/1prtD/nostruct-align/1prtD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1prtD/nostruct-align/1prtD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1prtD/nostruct-align/1prtD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16196/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.338867 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1prtF id: 1prtF alignment found: /projects/compbio/experiments/models.97/pdb/1p/1prtF/nostruct-align/1prtF.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1prtF/nostruct-align/1prtF.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1prtF/nostruct-align/1prtF.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17296/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.682861 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pru id: 1pru alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pru/nostruct-align/1pru.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pru/nostruct-align/1pru.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pru/nostruct-align/1pru.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30340/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.307983 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1prxA id: 1prxA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1prxA/nostruct-align/1prxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1prxA/nostruct-align/1prxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1prxA/nostruct-align/1prxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2731/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.385986 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1prxB id: 1prxB alignment found: /projects/compbio/experiments/models.97/pdb/1p/1prxB/nostruct-align/1prxB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1prxB/nostruct-align/1prxB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1prxB/nostruct-align/1prxB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30193/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.442871 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ps1A id: 1ps1A alignment found: /projects/compbio/experiments/models.97/pdb/1p/1ps1A/nostruct-align/1ps1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1ps1A/nostruct-align/1ps1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1ps1A/nostruct-align/1ps1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6623/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.747803 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pscA id: 1pscA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pscA/nostruct-align/1pscA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pscA/nostruct-align/1pscA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pscA/nostruct-align/1pscA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25799/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.409912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1psdA id: 1psdA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1psdA/nostruct-align/1psdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1psdA/nostruct-align/1psdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1psdA/nostruct-align/1psdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11013/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.213867 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1psdA_1 id: 1psdA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1psdA_1/nostruct-align/1psdA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1psdA_1/nostruct-align/1psdA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1psdA_1/nostruct-align/1psdA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7410/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.435913 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1psdA_2 id: 1psdA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1psdA_2/nostruct-align/1psdA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1psdA_2/nostruct-align/1psdA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1psdA_2/nostruct-align/1psdA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21587/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.109863 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1psdA_3 id: 1psdA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1psdA_3/nostruct-align/1psdA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1psdA_3/nostruct-align/1psdA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1psdA_3/nostruct-align/1psdA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19341/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.069824 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pse id: 1pse alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pse/nostruct-align/1pse.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pse/nostruct-align/1pse.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pse/nostruct-align/1pse.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32456/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.115967 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1psm id: 1psm alignment found: /projects/compbio/experiments/models.97/pdb/1p/1psm/nostruct-align/1psm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1psm/nostruct-align/1psm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1psm/nostruct-align/1psm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5781/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.260986 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pspA_1 id: 1pspA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pspA_1/nostruct-align/1pspA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pspA_1/nostruct-align/1pspA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pspA_1/nostruct-align/1pspA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19589/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.354004 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pspA_2 id: 1pspA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pspA_2/nostruct-align/1pspA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pspA_2/nostruct-align/1pspA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pspA_2/nostruct-align/1pspA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8601/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.261963 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1psrA id: 1psrA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1psrA/nostruct-align/1psrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1psrA/nostruct-align/1psrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1psrA/nostruct-align/1psrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4888/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.350952 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pszA id: 1pszA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pszA/nostruct-align/1pszA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pszA/nostruct-align/1pszA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pszA/nostruct-align/1pszA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2788/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.483887 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pta id: 1pta alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pta/nostruct-align/1pta.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pta/nostruct-align/1pta.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pta/nostruct-align/1pta.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3255/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.727783 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ptf id: 1ptf alignment found: /projects/compbio/experiments/models.97/pdb/1p/1ptf/nostruct-align/1ptf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1ptf/nostruct-align/1ptf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1ptf/nostruct-align/1ptf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27929/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.387817 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ptq id: 1ptq alignment found: /projects/compbio/experiments/models.97/pdb/1p/1ptq/nostruct-align/1ptq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1ptq/nostruct-align/1ptq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1ptq/nostruct-align/1ptq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10391/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.321899 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ptvA id: 1ptvA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1ptvA/nostruct-align/1ptvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1ptvA/nostruct-align/1ptvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1ptvA/nostruct-align/1ptvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-613/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.185791 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pty id: 1pty alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pty/nostruct-align/1pty.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pty/nostruct-align/1pty.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pty/nostruct-align/1pty.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-773/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.910889 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1puc id: 1puc alignment found: /projects/compbio/experiments/models.97/pdb/1p/1puc/nostruct-align/1puc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1puc/nostruct-align/1puc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1puc/nostruct-align/1puc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9226/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.413940 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pud id: 1pud alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pud/nostruct-align/1pud.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pud/nostruct-align/1pud.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pud/nostruct-align/1pud.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20818/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.330811 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1put id: 1put alignment found: /projects/compbio/experiments/models.97/pdb/1p/1put/nostruct-align/1put.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1put/nostruct-align/1put.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1put/nostruct-align/1put.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6552/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.427002 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pvc1 id: 1pvc1 alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pvc1/nostruct-align/1pvc1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pvc1/nostruct-align/1pvc1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pvc1/nostruct-align/1pvc1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17215/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.018921 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pvc2 id: 1pvc2 alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pvc2/nostruct-align/1pvc2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pvc2/nostruct-align/1pvc2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pvc2/nostruct-align/1pvc2.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-8553/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.210938 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pvc3 id: 1pvc3 alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pvc3/nostruct-align/1pvc3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pvc3/nostruct-align/1pvc3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pvc3/nostruct-align/1pvc3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24791/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.739868 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pvc4 id: 1pvc4 alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pvc4/nostruct-align/1pvc4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pvc4/nostruct-align/1pvc4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pvc4/nostruct-align/1pvc4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8585/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.947876 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pvdA_2 id: 1pvdA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pvdA_2/nostruct-align/1pvdA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pvdA_2/nostruct-align/1pvdA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pvdA_2/nostruct-align/1pvdA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28664/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.845825 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pvdA_3 id: 1pvdA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pvdA_3/nostruct-align/1pvdA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pvdA_3/nostruct-align/1pvdA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pvdA_3/nostruct-align/1pvdA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30766/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.616943 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pvl id: 1pvl alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pvl/nostruct-align/1pvl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pvl/nostruct-align/1pvl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pvl/nostruct-align/1pvl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19056/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.324829 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pvuA id: 1pvuA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pvuA/nostruct-align/1pvuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pvuA/nostruct-align/1pvuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pvuA/nostruct-align/1pvuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-705/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.562988 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pvxA id: 1pvxA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pvxA/nostruct-align/1pvxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pvxA/nostruct-align/1pvxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pvxA/nostruct-align/1pvxA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17833/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.440918 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pxtA_1 id: 1pxtA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pxtA_1/nostruct-align/1pxtA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pxtA_1/nostruct-align/1pxtA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pxtA_1/nostruct-align/1pxtA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13056/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.161987 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pxtA_2 id: 1pxtA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pxtA_2/nostruct-align/1pxtA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pxtA_2/nostruct-align/1pxtA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pxtA_2/nostruct-align/1pxtA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23942/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.228882 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pxtB id: 1pxtB alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pxtB/nostruct-align/1pxtB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pxtB/nostruct-align/1pxtB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pxtB/nostruct-align/1pxtB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-15720/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.193848 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pyaA id: 1pyaA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pyaA/nostruct-align/1pyaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pyaA/nostruct-align/1pyaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pyaA/nostruct-align/1pyaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24586/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.138916 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pyaB id: 1pyaB alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pyaB/nostruct-align/1pyaB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pyaB/nostruct-align/1pyaB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pyaB/nostruct-align/1pyaB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24431/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.683960 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pya_1a1 id: 1pya_1a1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pya_1a1/nostruct-align/1pya_1a1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pya_1a1/nostruct-align/1pya_1a1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pya_1a1/nostruct-align/1pya_1a1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24023/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.066895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pyc id: 1pyc alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pyc/nostruct-align/1pyc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pyc/nostruct-align/1pyc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pyc/nostruct-align/1pyc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18229/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.153931 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pyiA id: 1pyiA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pyiA/nostruct-align/1pyiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pyiA/nostruct-align/1pyiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pyiA/nostruct-align/1pyiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23122/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.677856 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pyiA_1 id: 1pyiA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pyiA_1/nostruct-align/1pyiA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pyiA_1/nostruct-align/1pyiA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pyiA_1/nostruct-align/1pyiA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24583/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.358887 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pyi_1a1 id: 1pyi_1a1 alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pyi_1a1/nostruct-align/1pyi_1a1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pyi_1a1/nostruct-align/1pyi_1a1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1p/1pyi_1a1/nostruct-align/1pyi_1a1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7182/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.298828 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pymA id: 1pymA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pymA/nostruct-align/1pymA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pymA/nostruct-align/1pymA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pymA/nostruct-align/1pymA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17480/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.455933 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pyp id: 1pyp alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pyp/nostruct-align/1pyp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pyp/nostruct-align/1pyp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pyp/nostruct-align/1pyp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10614/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.736816 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pysA id: 1pysA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pysA/nostruct-align/1pysA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pysA/nostruct-align/1pysA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pysA/nostruct-align/1pysA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14894/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.272949 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pysB id: 1pysB alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pysB/nostruct-align/1pysB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pysB/nostruct-align/1pysB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pysB/nostruct-align/1pysB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31661/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.207886 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1pytA id: 1pytA alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pytA/nostruct-align/1pytA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pytA/nostruct-align/1pytA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1p/1pytA/nostruct-align/1pytA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16143/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.844849 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qa1A id: 1qa1A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qa1A/nostruct-align/1qa1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qa1A/nostruct-align/1qa1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qa1A/nostruct-align/1qa1A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31080/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.700806 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qa4A id: 1qa4A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qa4A/nostruct-align/1qa4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qa4A/nostruct-align/1qa4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qa4A/nostruct-align/1qa4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16539/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.560913 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qa5A id: 1qa5A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qa5A/nostruct-align/1qa5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qa5A/nostruct-align/1qa5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qa5A/nostruct-align/1qa5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16351/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.560913 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qa6A id: 1qa6A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qa6A/nostruct-align/1qa6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qa6A/nostruct-align/1qa6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qa6A/nostruct-align/1qa6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32278/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.101929 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qa7B id: 1qa7B alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qa7B/nostruct-align/1qa7B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qa7B/nostruct-align/1qa7B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qa7B/nostruct-align/1qa7B.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-16231/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.396973 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qa9A id: 1qa9A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qa9A/nostruct-align/1qa9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qa9A/nostruct-align/1qa9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qa9A/nostruct-align/1qa9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28445/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.012939 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qadA id: 1qadA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qadA/nostruct-align/1qadA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qadA/nostruct-align/1qadA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qadA/nostruct-align/1qadA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3686/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.785889 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qaeA id: 1qaeA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qaeA/nostruct-align/1qaeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qaeA/nostruct-align/1qaeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qaeA/nostruct-align/1qaeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25891/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.569824 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qagA id: 1qagA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qagA/nostruct-align/1qagA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qagA/nostruct-align/1qagA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qagA/nostruct-align/1qagA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6372/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.139893 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qapA id: 1qapA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qapA/nostruct-align/1qapA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qapA/nostruct-align/1qapA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qapA/nostruct-align/1qapA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9943/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.599854 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qatB id: 1qatB alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qatB/nostruct-align/1qatB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qatB/nostruct-align/1qatB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qatB/nostruct-align/1qatB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15515/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.473877 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qauA id: 1qauA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qauA/nostruct-align/1qauA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qauA/nostruct-align/1qauA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qauA/nostruct-align/1qauA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6614/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.537842 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qawF id: 1qawF alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qawF/nostruct-align/1qawF.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qawF/nostruct-align/1qawF.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qawF/nostruct-align/1qawF.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-14571/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.052856 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qaxA id: 1qaxA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qaxA/nostruct-align/1qaxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qaxA/nostruct-align/1qaxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qaxA/nostruct-align/1qaxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28528/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.276978 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qazA id: 1qazA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qazA/nostruct-align/1qazA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qazA/nostruct-align/1qazA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qazA/nostruct-align/1qazA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7655/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.149902 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qb2A id: 1qb2A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qb2A/nostruct-align/1qb2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qb2A/nostruct-align/1qb2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qb2A/nostruct-align/1qb2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27120/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.498901 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qb7A id: 1qb7A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qb7A/nostruct-align/1qb7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qb7A/nostruct-align/1qb7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qb7A/nostruct-align/1qb7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11526/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.713867 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qba id: 1qba alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qba/nostruct-align/1qba.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qba/nostruct-align/1qba.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qba/nostruct-align/1qba.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32450/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.713867 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qbeA id: 1qbeA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qbeA/nostruct-align/1qbeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qbeA/nostruct-align/1qbeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qbeA/nostruct-align/1qbeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19865/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.574829 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qbhA id: 1qbhA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qbhA/nostruct-align/1qbhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qbhA/nostruct-align/1qbhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qbhA/nostruct-align/1qbhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-851/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.464844 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qbjA id: 1qbjA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qbjA/nostruct-align/1qbjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qbjA/nostruct-align/1qbjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qbjA/nostruct-align/1qbjA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14523/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.313965 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qbkB id: 1qbkB alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qbkB/nostruct-align/1qbkB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qbkB/nostruct-align/1qbkB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qbkB/nostruct-align/1qbkB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9121/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.883911 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qbzA id: 1qbzA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qbzA/nostruct-align/1qbzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qbzA/nostruct-align/1qbzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qbzA/nostruct-align/1qbzA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29851/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.049805 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qbzC id: 1qbzC alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qbzC/nostruct-align/1qbzC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qbzC/nostruct-align/1qbzC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qbzC/nostruct-align/1qbzC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23110/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.103882 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qc7A id: 1qc7A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qc7A/nostruct-align/1qc7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qc7A/nostruct-align/1qc7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qc7A/nostruct-align/1qc7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3410/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.573853 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qckA id: 1qckA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qckA/nostruct-align/1qckA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qckA/nostruct-align/1qckA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qckA/nostruct-align/1qckA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20815/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.137817 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qcnA id: 1qcnA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qcnA/nostruct-align/1qcnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qcnA/nostruct-align/1qcnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qcnA/nostruct-align/1qcnA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32614/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.574951 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qcrA id: 1qcrA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qcrA/nostruct-align/1qcrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qcrA/nostruct-align/1qcrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qcrA/nostruct-align/1qcrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28296/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.250854 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qcrC id: 1qcrC alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qcrC/nostruct-align/1qcrC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qcrC/nostruct-align/1qcrC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qcrC/nostruct-align/1qcrC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8999/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.365967 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qcrD id: 1qcrD alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qcrD/nostruct-align/1qcrD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qcrD/nostruct-align/1qcrD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qcrD/nostruct-align/1qcrD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5536/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.251831 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qcrF id: 1qcrF alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qcrF/nostruct-align/1qcrF.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qcrF/nostruct-align/1qcrF.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qcrF/nostruct-align/1qcrF.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10319/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.659912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qcrG id: 1qcrG alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qcrG/nostruct-align/1qcrG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qcrG/nostruct-align/1qcrG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qcrG/nostruct-align/1qcrG.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11750/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.082886 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qcrH id: 1qcrH alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qcrH/nostruct-align/1qcrH.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qcrH/nostruct-align/1qcrH.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qcrH/nostruct-align/1qcrH.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18159/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.096924 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qcrJ id: 1qcrJ alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qcrJ/nostruct-align/1qcrJ.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qcrJ/nostruct-align/1qcrJ.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qcrJ/nostruct-align/1qcrJ.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7709/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.442871 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qcrK id: 1qcrK alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qcrK/nostruct-align/1qcrK.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qcrK/nostruct-align/1qcrK.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qcrK/nostruct-align/1qcrK.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28978/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.230957 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qcsA id: 1qcsA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qcsA/nostruct-align/1qcsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qcsA/nostruct-align/1qcsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qcsA/nostruct-align/1qcsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2044/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.303955 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qcxA id: 1qcxA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qcxA/nostruct-align/1qcxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qcxA/nostruct-align/1qcxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qcxA/nostruct-align/1qcxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20881/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.803833 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qczA id: 1qczA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qczA/nostruct-align/1qczA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qczA/nostruct-align/1qczA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qczA/nostruct-align/1qczA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13359/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.316895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qd1A id: 1qd1A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qd1A/nostruct-align/1qd1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qd1A/nostruct-align/1qd1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qd1A/nostruct-align/1qd1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12306/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.331909 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qd5A id: 1qd5A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qd5A/nostruct-align/1qd5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qd5A/nostruct-align/1qd5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qd5A/nostruct-align/1qd5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19017/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.862915 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qd9A id: 1qd9A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qd9A/nostruct-align/1qd9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qd9A/nostruct-align/1qd9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qd9A/nostruct-align/1qd9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17658/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.768799 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qdbA id: 1qdbA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qdbA/nostruct-align/1qdbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qdbA/nostruct-align/1qdbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qdbA/nostruct-align/1qdbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14270/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.658936 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qddA id: 1qddA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qddA/nostruct-align/1qddA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qddA/nostruct-align/1qddA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qddA/nostruct-align/1qddA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10705/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.656860 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qdlA id: 1qdlA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qdlA/nostruct-align/1qdlA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qdlA/nostruct-align/1qdlA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qdlA/nostruct-align/1qdlA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10803/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.320923 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qdlB id: 1qdlB alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qdlB/nostruct-align/1qdlB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qdlB/nostruct-align/1qdlB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qdlB/nostruct-align/1qdlB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25476/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.691895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qexA id: 1qexA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qexA/nostruct-align/1qexA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qexA/nostruct-align/1qexA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qexA/nostruct-align/1qexA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25748/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.415894 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qeyA id: 1qeyA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qeyA/nostruct-align/1qeyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qeyA/nostruct-align/1qeyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qeyA/nostruct-align/1qeyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21359/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.313843 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qf5A id: 1qf5A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qf5A/nostruct-align/1qf5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qf5A/nostruct-align/1qf5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qf5A/nostruct-align/1qf5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15188/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.094849 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qf6A id: 1qf6A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qf6A/nostruct-align/1qf6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qf6A/nostruct-align/1qf6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qf6A/nostruct-align/1qf6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23634/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.734863 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qf8A id: 1qf8A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qf8A/nostruct-align/1qf8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qf8A/nostruct-align/1qf8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qf8A/nostruct-align/1qf8A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8147/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.669922 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qfdA id: 1qfdA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qfdA/nostruct-align/1qfdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qfdA/nostruct-align/1qfdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qfdA/nostruct-align/1qfdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21527/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.929932 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qfeA id: 1qfeA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qfeA/nostruct-align/1qfeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qfeA/nostruct-align/1qfeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qfeA/nostruct-align/1qfeA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8744/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.338867 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qfhA id: 1qfhA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qfhA/nostruct-align/1qfhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qfhA/nostruct-align/1qfhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qfhA/nostruct-align/1qfhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21915/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.659912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qfjA id: 1qfjA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qfjA/nostruct-align/1qfjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qfjA/nostruct-align/1qfjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qfjA/nostruct-align/1qfjA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24119/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.983887 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qfmA id: 1qfmA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qfmA/nostruct-align/1qfmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qfmA/nostruct-align/1qfmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qfmA/nostruct-align/1qfmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16634/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.173828 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qfnA id: 1qfnA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qfnA/nostruct-align/1qfnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qfnA/nostruct-align/1qfnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qfnA/nostruct-align/1qfnA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31957/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.728882 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qfoA id: 1qfoA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qfoA/nostruct-align/1qfoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qfoA/nostruct-align/1qfoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qfoA/nostruct-align/1qfoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11073/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.720825 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qfoC id: 1qfoC alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qfoC/nostruct-align/1qfoC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qfoC/nostruct-align/1qfoC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qfoC/nostruct-align/1qfoC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5976/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.076904 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qfqB id: 1qfqB alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qfqB/nostruct-align/1qfqB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qfqB/nostruct-align/1qfqB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qfqB/nostruct-align/1qfqB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18401/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.430908 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qftA id: 1qftA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qftA/nostruct-align/1qftA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qftA/nostruct-align/1qftA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qftA/nostruct-align/1qftA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3047/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.890869 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qfxA id: 1qfxA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qfxA/nostruct-align/1qfxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qfxA/nostruct-align/1qfxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qfxA/nostruct-align/1qfxA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1806/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.876953 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qg0A id: 1qg0A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qg0A/nostruct-align/1qg0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qg0A/nostruct-align/1qg0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qg0A/nostruct-align/1qg0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15735/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.579834 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qg3A id: 1qg3A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qg3A/nostruct-align/1qg3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qg3A/nostruct-align/1qg3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qg3A/nostruct-align/1qg3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18373/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.834961 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qg8A id: 1qg8A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qg8A/nostruct-align/1qg8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qg8A/nostruct-align/1qg8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qg8A/nostruct-align/1qg8A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19624/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.487915 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qgbA id: 1qgbA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qgbA/nostruct-align/1qgbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qgbA/nostruct-align/1qgbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qgbA/nostruct-align/1qgbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9529/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.796997 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qghA id: 1qghA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qghA/nostruct-align/1qghA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qghA/nostruct-align/1qghA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qghA/nostruct-align/1qghA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5569/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.021851 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qgiA id: 1qgiA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qgiA/nostruct-align/1qgiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qgiA/nostruct-align/1qgiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qgiA/nostruct-align/1qgiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10802/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.032959 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qgkB id: 1qgkB alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qgkB/nostruct-align/1qgkB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qgkB/nostruct-align/1qgkB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qgkB/nostruct-align/1qgkB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5599/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.494995 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qgoA id: 1qgoA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qgoA/nostruct-align/1qgoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qgoA/nostruct-align/1qgoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qgoA/nostruct-align/1qgoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6066/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.142822 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qgrA id: 1qgrA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qgrA/nostruct-align/1qgrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qgrA/nostruct-align/1qgrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qgrA/nostruct-align/1qgrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26634/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.040894 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qgtA id: 1qgtA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qgtA/nostruct-align/1qgtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qgtA/nostruct-align/1qgtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qgtA/nostruct-align/1qgtA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23356/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.211914 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qguA id: 1qguA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qguA/nostruct-align/1qguA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qguA/nostruct-align/1qguA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qguA/nostruct-align/1qguA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3788/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.881958 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qguB id: 1qguB alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qguB/nostruct-align/1qguB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qguB/nostruct-align/1qguB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qguB/nostruct-align/1qguB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32364/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.416870 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qgvA id: 1qgvA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qgvA/nostruct-align/1qgvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qgvA/nostruct-align/1qgvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qgvA/nostruct-align/1qgvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10635/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.836914 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qgwA id: 1qgwA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qgwA/nostruct-align/1qgwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qgwA/nostruct-align/1qgwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qgwA/nostruct-align/1qgwA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15149/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.013916 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qgwC id: 1qgwC alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qgwC/nostruct-align/1qgwC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qgwC/nostruct-align/1qgwC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qgwC/nostruct-align/1qgwC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25233/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.345947 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qgxA id: 1qgxA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qgxA/nostruct-align/1qgxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qgxA/nostruct-align/1qgxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qgxA/nostruct-align/1qgxA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2811/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.942871 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qh3A id: 1qh3A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qh3A/nostruct-align/1qh3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qh3A/nostruct-align/1qh3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qh3A/nostruct-align/1qh3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14873/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.869873 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qh4A id: 1qh4A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qh4A/nostruct-align/1qh4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qh4A/nostruct-align/1qh4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qh4A/nostruct-align/1qh4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10784/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.206909 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qh5A id: 1qh5A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qh5A/nostruct-align/1qh5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qh5A/nostruct-align/1qh5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qh5A/nostruct-align/1qh5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3988/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.830933 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qh8A id: 1qh8A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qh8A/nostruct-align/1qh8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qh8A/nostruct-align/1qh8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qh8A/nostruct-align/1qh8A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3863/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.884888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qh8B id: 1qh8B alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qh8B/nostruct-align/1qh8B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qh8B/nostruct-align/1qh8B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qh8B/nostruct-align/1qh8B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18647/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.048828 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qhaA id: 1qhaA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qhaA/nostruct-align/1qhaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qhaA/nostruct-align/1qhaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qhaA/nostruct-align/1qhaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15540/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.732910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qhfA id: 1qhfA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qhfA/nostruct-align/1qhfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qhfA/nostruct-align/1qhfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qhfA/nostruct-align/1qhfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9555/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.987793 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qhiA id: 1qhiA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qhiA/nostruct-align/1qhiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qhiA/nostruct-align/1qhiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qhiA/nostruct-align/1qhiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12376/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.975830 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qhkA id: 1qhkA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qhkA/nostruct-align/1qhkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qhkA/nostruct-align/1qhkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qhkA/nostruct-align/1qhkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29441/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.052856 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qhlA id: 1qhlA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qhlA/nostruct-align/1qhlA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qhlA/nostruct-align/1qhlA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qhlA/nostruct-align/1qhlA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10431/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.360840 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qhsA id: 1qhsA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qhsA/nostruct-align/1qhsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qhsA/nostruct-align/1qhsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qhsA/nostruct-align/1qhsA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19021/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.504883 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qhuA id: 1qhuA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qhuA/nostruct-align/1qhuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qhuA/nostruct-align/1qhuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qhuA/nostruct-align/1qhuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27722/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.138916 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qhvA id: 1qhvA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qhvA/nostruct-align/1qhvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qhvA/nostruct-align/1qhvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qhvA/nostruct-align/1qhvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12166/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.302979 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qi7A id: 1qi7A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qi7A/nostruct-align/1qi7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qi7A/nostruct-align/1qi7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qi7A/nostruct-align/1qi7A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15575/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.287964 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qipA id: 1qipA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qipA/nostruct-align/1qipA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qipA/nostruct-align/1qipA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qipA/nostruct-align/1qipA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6779/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.528931 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qj2A id: 1qj2A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qj2A/nostruct-align/1qj2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qj2A/nostruct-align/1qj2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qj2A/nostruct-align/1qj2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6192/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.425903 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qj2B id: 1qj2B alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qj2B/nostruct-align/1qj2B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qj2B/nostruct-align/1qj2B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qj2B/nostruct-align/1qj2B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4878/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.477905 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qj2C id: 1qj2C alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qj2C/nostruct-align/1qj2C.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qj2C/nostruct-align/1qj2C.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qj2C/nostruct-align/1qj2C.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30114/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.430908 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qj4A id: 1qj4A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qj4A/nostruct-align/1qj4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qj4A/nostruct-align/1qj4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qj4A/nostruct-align/1qj4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21619/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.766846 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qj8A id: 1qj8A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qj8A/nostruct-align/1qj8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qj8A/nostruct-align/1qj8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qj8A/nostruct-align/1qj8A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29656/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.945923 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qjaA id: 1qjaA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qjaA/nostruct-align/1qjaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qjaA/nostruct-align/1qjaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qjaA/nostruct-align/1qjaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25170/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.663818 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qjdA id: 1qjdA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qjdA/nostruct-align/1qjdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qjdA/nostruct-align/1qjdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qjdA/nostruct-align/1qjdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17578/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.500000 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qjkA id: 1qjkA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qjkA/nostruct-align/1qjkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qjkA/nostruct-align/1qjkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qjkA/nostruct-align/1qjkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12559/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.613892 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qjwA id: 1qjwA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qjwA/nostruct-align/1qjwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qjwA/nostruct-align/1qjwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qjwA/nostruct-align/1qjwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30979/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.266968 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qk3A id: 1qk3A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qk3A/nostruct-align/1qk3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qk3A/nostruct-align/1qk3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qk3A/nostruct-align/1qk3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2479/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.271973 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qk4A id: 1qk4A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qk4A/nostruct-align/1qk4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qk4A/nostruct-align/1qk4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qk4A/nostruct-align/1qk4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17034/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.564941 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qk6A id: 1qk6A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qk6A/nostruct-align/1qk6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qk6A/nostruct-align/1qk6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qk6A/nostruct-align/1qk6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16735/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.834961 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qk7A id: 1qk7A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qk7A/nostruct-align/1qk7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qk7A/nostruct-align/1qk7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qk7A/nostruct-align/1qk7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23633/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.193970 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qk9A id: 1qk9A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qk9A/nostruct-align/1qk9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qk9A/nostruct-align/1qk9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qk9A/nostruct-align/1qk9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2188/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.082886 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qkfA id: 1qkfA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qkfA/nostruct-align/1qkfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qkfA/nostruct-align/1qkfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qkfA/nostruct-align/1qkfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2355/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.034912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qklA id: 1qklA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qklA/nostruct-align/1qklA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qklA/nostruct-align/1qklA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qklA/nostruct-align/1qklA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19041/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.779907 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qksA id: 1qksA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qksA/nostruct-align/1qksA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qksA/nostruct-align/1qksA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qksA/nostruct-align/1qksA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12577/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.458984 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ql1A id: 1ql1A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1ql1A/nostruct-align/1ql1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1ql1A/nostruct-align/1ql1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1ql1A/nostruct-align/1ql1A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1957/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.226929 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qlaA id: 1qlaA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qlaA/nostruct-align/1qlaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qlaA/nostruct-align/1qlaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qlaA/nostruct-align/1qlaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11719/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.988892 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qlaB id: 1qlaB alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qlaB/nostruct-align/1qlaB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qlaB/nostruct-align/1qlaB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qlaB/nostruct-align/1qlaB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19591/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.682007 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qlaC id: 1qlaC alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qlaC/nostruct-align/1qlaC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qlaC/nostruct-align/1qlaC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qlaC/nostruct-align/1qlaC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7423/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.915894 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qldA id: 1qldA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qldA/nostruct-align/1qldA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qldA/nostruct-align/1qldA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qldA/nostruct-align/1qldA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29791/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.523926 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qleD id: 1qleD alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qleD/nostruct-align/1qleD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qleD/nostruct-align/1qleD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qleD/nostruct-align/1qleD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17460/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.737915 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qlgA id: 1qlgA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qlgA/nostruct-align/1qlgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qlgA/nostruct-align/1qlgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qlgA/nostruct-align/1qlgA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18712/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.951904 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qli id: 1qli alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qli/nostruct-align/1qli.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qli/nostruct-align/1qli.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qli/nostruct-align/1qli.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20907/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.179932 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qlmA id: 1qlmA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qlmA/nostruct-align/1qlmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qlmA/nostruct-align/1qlmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qlmA/nostruct-align/1qlmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11910/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.363892 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qloA id: 1qloA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qloA/nostruct-align/1qloA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qloA/nostruct-align/1qloA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qloA/nostruct-align/1qloA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14746/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.366943 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qltA id: 1qltA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qltA/nostruct-align/1qltA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qltA/nostruct-align/1qltA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qltA/nostruct-align/1qltA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25162/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.685913 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qlwA id: 1qlwA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qlwA/nostruct-align/1qlwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qlwA/nostruct-align/1qlwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qlwA/nostruct-align/1qlwA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31474/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.003906 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qlyA id: 1qlyA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qlyA/nostruct-align/1qlyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qlyA/nostruct-align/1qlyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qlyA/nostruct-align/1qlyA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9890/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.993896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qlzA id: 1qlzA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qlzA/nostruct-align/1qlzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qlzA/nostruct-align/1qlzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qlzA/nostruct-align/1qlzA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14494/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.606812 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qm1A id: 1qm1A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qm1A/nostruct-align/1qm1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qm1A/nostruct-align/1qm1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qm1A/nostruct-align/1qm1A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28862/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.606812 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qm3A id: 1qm3A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qm3A/nostruct-align/1qm3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qm3A/nostruct-align/1qm3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qm3A/nostruct-align/1qm3A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9992/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.606812 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qmgA id: 1qmgA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qmgA/nostruct-align/1qmgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qmgA/nostruct-align/1qmgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qmgA/nostruct-align/1qmgA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10857/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.865845 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qmhA id: 1qmhA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qmhA/nostruct-align/1qmhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qmhA/nostruct-align/1qmhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qmhA/nostruct-align/1qmhA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23870/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.526855 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qmmA id: 1qmmA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qmmA/nostruct-align/1qmmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qmmA/nostruct-align/1qmmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qmmA/nostruct-align/1qmmA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16091/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.074829 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qmpA id: 1qmpA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qmpA/nostruct-align/1qmpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qmpA/nostruct-align/1qmpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qmpA/nostruct-align/1qmpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25241/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.412964 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qnaA id: 1qnaA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qnaA/nostruct-align/1qnaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qnaA/nostruct-align/1qnaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qnaA/nostruct-align/1qnaA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28100/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.287842 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qnf id: 1qnf alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qnf/nostruct-align/1qnf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qnf/nostruct-align/1qnf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qnf/nostruct-align/1qnf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8611/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.265869 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qnjA id: 1qnjA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qnjA/nostruct-align/1qnjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qnjA/nostruct-align/1qnjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qnjA/nostruct-align/1qnjA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10040/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.566895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qo0D id: 1qo0D alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qo0D/nostruct-align/1qo0D.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qo0D/nostruct-align/1qo0D.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qo0D/nostruct-align/1qo0D.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9254/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.604004 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qo3C id: 1qo3C alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qo3C/nostruct-align/1qo3C.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qo3C/nostruct-align/1qo3C.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qo3C/nostruct-align/1qo3C.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31829/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.566895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qo7A id: 1qo7A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qo7A/nostruct-align/1qo7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qo7A/nostruct-align/1qo7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qo7A/nostruct-align/1qo7A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25189/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.655884 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qoiA id: 1qoiA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qoiA/nostruct-align/1qoiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qoiA/nostruct-align/1qoiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qoiA/nostruct-align/1qoiA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28748/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.766968 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qorA id: 1qorA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qorA/nostruct-align/1qorA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qorA/nostruct-align/1qorA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qorA/nostruct-align/1qorA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27524/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.018921 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qorA_1 id: 1qorA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1q/1qorA_1/nostruct-align/1qorA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1q/1qorA_1/nostruct-align/1qorA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1q/1qorA_1/nostruct-align/1qorA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28434/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.975830 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qorA_2 id: 1qorA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1q/1qorA_2/nostruct-align/1qorA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1q/1qorA_2/nostruct-align/1qorA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1q/1qorA_2/nostruct-align/1qorA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22980/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.237915 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qouA id: 1qouA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qouA/nostruct-align/1qouA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qouA/nostruct-align/1qouA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qouA/nostruct-align/1qouA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7633/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.093994 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qoxN id: 1qoxN alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qoxN/nostruct-align/1qoxN.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qoxN/nostruct-align/1qoxN.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qoxN/nostruct-align/1qoxN.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24423/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.694946 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qoyA id: 1qoyA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qoyA/nostruct-align/1qoyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qoyA/nostruct-align/1qoyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qoyA/nostruct-align/1qoyA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20439/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.126953 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qp6A id: 1qp6A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qp6A/nostruct-align/1qp6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qp6A/nostruct-align/1qp6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qp6A/nostruct-align/1qp6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21104/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.606934 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qp8A id: 1qp8A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qp8A/nostruct-align/1qp8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qp8A/nostruct-align/1qp8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qp8A/nostruct-align/1qp8A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4765/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.032837 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qpbA id: 1qpbA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qpbA/nostruct-align/1qpbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qpbA/nostruct-align/1qpbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qpbA/nostruct-align/1qpbA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15975/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.879883 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qpmA id: 1qpmA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qpmA/nostruct-align/1qpmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qpmA/nostruct-align/1qpmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qpmA/nostruct-align/1qpmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18191/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.492798 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qpoA id: 1qpoA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qpoA/nostruct-align/1qpoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qpoA/nostruct-align/1qpoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qpoA/nostruct-align/1qpoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29476/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.878906 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qpxA id: 1qpxA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qpxA/nostruct-align/1qpxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qpxA/nostruct-align/1qpxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qpxA/nostruct-align/1qpxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7829/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.696899 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qpzA id: 1qpzA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qpzA/nostruct-align/1qpzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qpzA/nostruct-align/1qpzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qpzA/nostruct-align/1qpzA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21034/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.701904 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qq2A id: 1qq2A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qq2A/nostruct-align/1qq2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qq2A/nostruct-align/1qq2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qq2A/nostruct-align/1qq2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24786/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.893799 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qq4A id: 1qq4A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qq4A/nostruct-align/1qq4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qq4A/nostruct-align/1qq4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qq4A/nostruct-align/1qq4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23288/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.909912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qq5A id: 1qq5A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qq5A/nostruct-align/1qq5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qq5A/nostruct-align/1qq5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qq5A/nostruct-align/1qq5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12872/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.479004 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qq7A id: 1qq7A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qq7A/nostruct-align/1qq7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qq7A/nostruct-align/1qq7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qq7A/nostruct-align/1qq7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9985/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.055908 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qq8A id: 1qq8A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qq8A/nostruct-align/1qq8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qq8A/nostruct-align/1qq8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qq8A/nostruct-align/1qq8A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23676/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.691895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qqeA id: 1qqeA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qqeA/nostruct-align/1qqeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qqeA/nostruct-align/1qqeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qqeA/nostruct-align/1qqeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1260/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.050903 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qqgA id: 1qqgA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qqgA/nostruct-align/1qqgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qqgA/nostruct-align/1qqgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qqgA/nostruct-align/1qqgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20717/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.522949 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qqhA id: 1qqhA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qqhA/nostruct-align/1qqhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qqhA/nostruct-align/1qqhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qqhA/nostruct-align/1qqhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28836/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.143921 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qqp1 id: 1qqp1 alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qqp1/nostruct-align/1qqp1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qqp1/nostruct-align/1qqp1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qqp1/nostruct-align/1qqp1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15710/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.280884 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qqp2 id: 1qqp2 alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qqp2/nostruct-align/1qqp2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qqp2/nostruct-align/1qqp2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qqp2/nostruct-align/1qqp2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27690/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.998901 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qqp3 id: 1qqp3 alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qqp3/nostruct-align/1qqp3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qqp3/nostruct-align/1qqp3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qqp3/nostruct-align/1qqp3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8557/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.117920 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qqp4 id: 1qqp4 alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qqp4/nostruct-align/1qqp4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qqp4/nostruct-align/1qqp4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qqp4/nostruct-align/1qqp4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12392/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.296875 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qqrA id: 1qqrA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qqrA/nostruct-align/1qqrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qqrA/nostruct-align/1qqrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qqrA/nostruct-align/1qqrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31779/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.963867 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qqtA id: 1qqtA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qqtA/nostruct-align/1qqtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qqtA/nostruct-align/1qqtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qqtA/nostruct-align/1qqtA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23072/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.177979 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qqvA id: 1qqvA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qqvA/nostruct-align/1qqvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qqvA/nostruct-align/1qqvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qqvA/nostruct-align/1qqvA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27038/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.597900 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qr0A id: 1qr0A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qr0A/nostruct-align/1qr0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qr0A/nostruct-align/1qr0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qr0A/nostruct-align/1qr0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16947/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.722900 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qr4B id: 1qr4B alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qr4B/nostruct-align/1qr4B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qr4B/nostruct-align/1qr4B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qr4B/nostruct-align/1qr4B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22981/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.578979 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qr6A id: 1qr6A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qr6A/nostruct-align/1qr6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qr6A/nostruct-align/1qr6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qr6A/nostruct-align/1qr6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25442/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.646851 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qr7A id: 1qr7A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qr7A/nostruct-align/1qr7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qr7A/nostruct-align/1qr7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qr7A/nostruct-align/1qr7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2084/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.220947 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qreA id: 1qreA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qreA/nostruct-align/1qreA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qreA/nostruct-align/1qreA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qreA/nostruct-align/1qreA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8275/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.448853 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qrjB id: 1qrjB alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qrjB/nostruct-align/1qrjB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qrjB/nostruct-align/1qrjB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qrjB/nostruct-align/1qrjB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7970/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.316895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qrqA id: 1qrqA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qrqA/nostruct-align/1qrqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qrqA/nostruct-align/1qrqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qrqA/nostruct-align/1qrqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4627/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.579834 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qrrA id: 1qrrA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qrrA/nostruct-align/1qrrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qrrA/nostruct-align/1qrrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qrrA/nostruct-align/1qrrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8709/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.578857 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qs0A id: 1qs0A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qs0A/nostruct-align/1qs0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qs0A/nostruct-align/1qs0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qs0A/nostruct-align/1qs0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22146/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.885864 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qs0B id: 1qs0B alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qs0B/nostruct-align/1qs0B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qs0B/nostruct-align/1qs0B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qs0B/nostruct-align/1qs0B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1189/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.920898 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qs1A id: 1qs1A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qs1A/nostruct-align/1qs1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qs1A/nostruct-align/1qs1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qs1A/nostruct-align/1qs1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9072/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.380981 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qs2A id: 1qs2A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qs2A/nostruct-align/1qs2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qs2A/nostruct-align/1qs2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qs2A/nostruct-align/1qs2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2371/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.999878 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qsaA id: 1qsaA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qsaA/nostruct-align/1qsaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qsaA/nostruct-align/1qsaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qsaA/nostruct-align/1qsaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18500/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.754883 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qsdA id: 1qsdA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qsdA/nostruct-align/1qsdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qsdA/nostruct-align/1qsdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qsdA/nostruct-align/1qsdA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21104/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.326904 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qsmA id: 1qsmA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qsmA/nostruct-align/1qsmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qsmA/nostruct-align/1qsmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qsmA/nostruct-align/1qsmA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17469/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.523926 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qspA id: 1qspA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qspA/nostruct-align/1qspA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qspA/nostruct-align/1qspA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qspA/nostruct-align/1qspA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4488/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.760864 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qt9A id: 1qt9A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qt9A/nostruct-align/1qt9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qt9A/nostruct-align/1qt9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qt9A/nostruct-align/1qt9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22603/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.988892 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qtrA id: 1qtrA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qtrA/nostruct-align/1qtrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qtrA/nostruct-align/1qtrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qtrA/nostruct-align/1qtrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24318/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.120850 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qtsA id: 1qtsA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qtsA/nostruct-align/1qtsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qtsA/nostruct-align/1qtsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qtsA/nostruct-align/1qtsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14228/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.305908 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qtwA id: 1qtwA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qtwA/nostruct-align/1qtwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qtwA/nostruct-align/1qtwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qtwA/nostruct-align/1qtwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18102/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.177856 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qu0A id: 1qu0A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qu0A/nostruct-align/1qu0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qu0A/nostruct-align/1qu0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qu0A/nostruct-align/1qu0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-918/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.330933 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qu1A id: 1qu1A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qu1A/nostruct-align/1qu1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qu1A/nostruct-align/1qu1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qu1A/nostruct-align/1qu1A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-604/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.957886 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qu2A id: 1qu2A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qu2A/nostruct-align/1qu2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qu2A/nostruct-align/1qu2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qu2A/nostruct-align/1qu2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29187/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.602783 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qu5A id: 1qu5A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qu5A/nostruct-align/1qu5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qu5A/nostruct-align/1qu5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qu5A/nostruct-align/1qu5A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24852/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.651001 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qu6A id: 1qu6A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qu6A/nostruct-align/1qu6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qu6A/nostruct-align/1qu6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qu6A/nostruct-align/1qu6A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14492/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.643799 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qu8A id: 1qu8A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qu8A/nostruct-align/1qu8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qu8A/nostruct-align/1qu8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qu8A/nostruct-align/1qu8A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8124/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.071899 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qu9A id: 1qu9A alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qu9A/nostruct-align/1qu9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qu9A/nostruct-align/1qu9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qu9A/nostruct-align/1qu9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26964/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.065796 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qubA id: 1qubA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qubA/nostruct-align/1qubA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qubA/nostruct-align/1qubA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qubA/nostruct-align/1qubA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1692/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.347900 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1que id: 1que alignment found: /projects/compbio/experiments/models.97/pdb/1q/1que/nostruct-align/1que.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1que/nostruct-align/1que.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1que/nostruct-align/1que.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4681/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.957886 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qumA id: 1qumA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qumA/nostruct-align/1qumA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qumA/nostruct-align/1qumA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qumA/nostruct-align/1qumA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9589/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.523926 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qupA id: 1qupA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qupA/nostruct-align/1qupA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qupA/nostruct-align/1qupA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qupA/nostruct-align/1qupA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9733/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.122803 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1quqA id: 1quqA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1quqA/nostruct-align/1quqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1quqA/nostruct-align/1quqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1quqA/nostruct-align/1quqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21787/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.859863 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1quqB id: 1quqB alignment found: /projects/compbio/experiments/models.97/pdb/1q/1quqB/nostruct-align/1quqB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1quqB/nostruct-align/1quqB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1quqB/nostruct-align/1quqB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6993/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.744995 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qusA id: 1qusA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qusA/nostruct-align/1qusA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qusA/nostruct-align/1qusA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qusA/nostruct-align/1qusA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15806/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.684814 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1quuA id: 1quuA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1quuA/nostruct-align/1quuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1quuA/nostruct-align/1quuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1quuA/nostruct-align/1quuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17797/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.436890 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1quvA id: 1quvA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1quvA/nostruct-align/1quvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1quvA/nostruct-align/1quvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1quvA/nostruct-align/1quvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14714/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.891846 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qvaA id: 1qvaA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qvaA/nostruct-align/1qvaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qvaA/nostruct-align/1qvaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qvaA/nostruct-align/1qvaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7842/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.741943 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qvbA id: 1qvbA alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qvbA/nostruct-align/1qvbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qvbA/nostruct-align/1qvbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qvbA/nostruct-align/1qvbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18234/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.500977 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1qyp id: 1qyp alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qyp/nostruct-align/1qyp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qyp/nostruct-align/1qyp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1q/1qyp/nostruct-align/1qyp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20310/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.491943 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1r1bA id: 1r1bA alignment found: /projects/compbio/experiments/models.97/pdb/1r/1r1bA/nostruct-align/1r1bA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1r1bA/nostruct-align/1r1bA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1r1bA/nostruct-align/1r1bA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30796/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.745850 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1r2aA id: 1r2aA alignment found: /projects/compbio/experiments/models.97/pdb/1r/1r2aA/nostruct-align/1r2aA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1r2aA/nostruct-align/1r2aA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1r2aA/nostruct-align/1r2aA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8465/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.131958 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1r2fA id: 1r2fA alignment found: /projects/compbio/experiments/models.97/pdb/1r/1r2fA/nostruct-align/1r2fA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1r2fA/nostruct-align/1r2fA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1r2fA/nostruct-align/1r2fA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12650/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.405884 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1r69 id: 1r69 alignment found: /projects/compbio/experiments/models.97/pdb/1r/1r69/nostruct-align/1r69.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1r69/nostruct-align/1r69.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1r69/nostruct-align/1r69.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16997/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.982910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ra9 id: 1ra9 alignment found: /projects/compbio/experiments/models.97/pdb/1r/1ra9/nostruct-align/1ra9.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1ra9/nostruct-align/1ra9.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1ra9/nostruct-align/1ra9.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28833/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.393921 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1raaA_1 id: 1raaA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1r/1raaA_1/nostruct-align/1raaA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1r/1raaA_1/nostruct-align/1raaA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1r/1raaA_1/nostruct-align/1raaA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10598/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.772827 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1raaA_2 id: 1raaA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1r/1raaA_2/nostruct-align/1raaA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1r/1raaA_2/nostruct-align/1raaA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1r/1raaA_2/nostruct-align/1raaA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6303/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.467896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1raaB_1 id: 1raaB_1 alignment found: /projects/compbio4/experiments/models.97/domains/1r/1raaB_1/nostruct-align/1raaB_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1r/1raaB_1/nostruct-align/1raaB_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1r/1raaB_1/nostruct-align/1raaB_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30851/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.541870 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1raaB_2 id: 1raaB_2 alignment found: /projects/compbio4/experiments/models.97/domains/1r/1raaB_2/nostruct-align/1raaB_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1r/1raaB_2/nostruct-align/1raaB_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1r/1raaB_2/nostruct-align/1raaB_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25533/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.905884 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rb9 id: 1rb9 alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rb9/nostruct-align/1rb9.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rb9/nostruct-align/1rb9.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rb9/nostruct-align/1rb9.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14624/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.518921 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rboC id: 1rboC alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rboC/nostruct-align/1rboC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rboC/nostruct-align/1rboC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rboC/nostruct-align/1rboC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30563/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.370972 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rcb id: 1rcb alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rcb/nostruct-align/1rcb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rcb/nostruct-align/1rcb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rcb/nostruct-align/1rcb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15262/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.099854 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rcd id: 1rcd alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rcd/nostruct-align/1rcd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rcd/nostruct-align/1rcd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rcd/nostruct-align/1rcd.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-11754/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.715820 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rcf id: 1rcf alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rcf/nostruct-align/1rcf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rcf/nostruct-align/1rcf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rcf/nostruct-align/1rcf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12342/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.917847 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rcy id: 1rcy alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rcy/nostruct-align/1rcy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rcy/nostruct-align/1rcy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rcy/nostruct-align/1rcy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31459/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.266846 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rdg id: 1rdg alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rdg/nostruct-align/1rdg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rdg/nostruct-align/1rdg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rdg/nostruct-align/1rdg.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6918/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.506958 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rdr id: 1rdr alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rdr/nostruct-align/1rdr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rdr/nostruct-align/1rdr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rdr/nostruct-align/1rdr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16887/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.262939 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rec id: 1rec alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rec/nostruct-align/1rec.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rec/nostruct-align/1rec.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rec/nostruct-align/1rec.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30200/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.303833 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1regX id: 1regX alignment found: /projects/compbio/experiments/models.97/pdb/1r/1regX/nostruct-align/1regX.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1regX/nostruct-align/1regX.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1regX/nostruct-align/1regX.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24415/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.524902 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1repC id: 1repC alignment found: /projects/compbio/experiments/models.97/pdb/1r/1repC/nostruct-align/1repC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1repC/nostruct-align/1repC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1repC/nostruct-align/1repC.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27065/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.598877 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1reqA id: 1reqA alignment found: /projects/compbio/experiments/models.97/pdb/1r/1reqA/nostruct-align/1reqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1reqA/nostruct-align/1reqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1reqA/nostruct-align/1reqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19370/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.137817 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1reqB id: 1reqB alignment found: /projects/compbio/experiments/models.97/pdb/1r/1reqB/nostruct-align/1reqB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1reqB/nostruct-align/1reqB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1reqB/nostruct-align/1reqB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10000/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.324829 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1reqD id: 1reqD alignment found: /projects/compbio/experiments/models.97/pdb/1r/1reqD/nostruct-align/1reqD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1reqD/nostruct-align/1reqD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1reqD/nostruct-align/1reqD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20254/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.027832 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1res id: 1res alignment found: /projects/compbio/experiments/models.97/pdb/1r/1res/nostruct-align/1res.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1res/nostruct-align/1res.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1res/nostruct-align/1res.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2278/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.209961 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ret id: 1ret alignment found: /projects/compbio/experiments/models.97/pdb/1r/1ret/nostruct-align/1ret.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1ret/nostruct-align/1ret.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1ret/nostruct-align/1ret.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28430/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.047852 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rfbA id: 1rfbA alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rfbA/nostruct-align/1rfbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rfbA/nostruct-align/1rfbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rfbA/nostruct-align/1rfbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13610/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.810913 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rfs id: 1rfs alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rfs/nostruct-align/1rfs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rfs/nostruct-align/1rfs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rfs/nostruct-align/1rfs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29776/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.217896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rgeA id: 1rgeA alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rgeA/nostruct-align/1rgeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rgeA/nostruct-align/1rgeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rgeA/nostruct-align/1rgeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10871/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.829956 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rgs id: 1rgs alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rgs/nostruct-align/1rgs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rgs/nostruct-align/1rgs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rgs/nostruct-align/1rgs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-254/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.024902 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rh2F id: 1rh2F alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rh2F/nostruct-align/1rh2F.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rh2F/nostruct-align/1rh2F.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rh2F/nostruct-align/1rh2F.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24377/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.630859 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rh4 id: 1rh4 alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rh4/nostruct-align/1rh4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rh4/nostruct-align/1rh4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rh4/nostruct-align/1rh4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13080/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.506836 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rhi3 id: 1rhi3 alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rhi3/nostruct-align/1rhi3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rhi3/nostruct-align/1rhi3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rhi3/nostruct-align/1rhi3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26509/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.533813 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rhoA id: 1rhoA alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rhoA/nostruct-align/1rhoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rhoA/nostruct-align/1rhoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rhoA/nostruct-align/1rhoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11157/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.209839 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rhoC id: 1rhoC alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rhoC/nostruct-align/1rhoC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rhoC/nostruct-align/1rhoC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rhoC/nostruct-align/1rhoC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24278/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.180908 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rhs id: 1rhs alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rhs/nostruct-align/1rhs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rhs/nostruct-align/1rhs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rhs/nostruct-align/1rhs.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6628/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.044922 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ribA id: 1ribA alignment found: /projects/compbio/experiments/models.97/pdb/1r/1ribA/nostruct-align/1ribA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1ribA/nostruct-align/1ribA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1ribA/nostruct-align/1ribA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-10447/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.163940 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rie id: 1rie alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rie/nostruct-align/1rie.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rie/nostruct-align/1rie.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rie/nostruct-align/1rie.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18041/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.985962 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rip id: 1rip alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rip/nostruct-align/1rip.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rip/nostruct-align/1rip.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rip/nostruct-align/1rip.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19393/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.922852 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ris id: 1ris alignment found: /projects/compbio/experiments/models.97/pdb/1r/1ris/nostruct-align/1ris.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1ris/nostruct-align/1ris.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1ris/nostruct-align/1ris.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30989/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.617798 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rkd id: 1rkd alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rkd/nostruct-align/1rkd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rkd/nostruct-align/1rkd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rkd/nostruct-align/1rkd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19567/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.229858 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rl2A id: 1rl2A alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rl2A/nostruct-align/1rl2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rl2A/nostruct-align/1rl2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rl2A/nostruct-align/1rl2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5752/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.020874 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rl6A id: 1rl6A alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rl6A/nostruct-align/1rl6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rl6A/nostruct-align/1rl6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rl6A/nostruct-align/1rl6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20407/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.790894 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rlaA id: 1rlaA alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rlaA/nostruct-align/1rlaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rlaA/nostruct-align/1rlaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rlaA/nostruct-align/1rlaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1571/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.009888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rlr id: 1rlr alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rlr/nostruct-align/1rlr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rlr/nostruct-align/1rlr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rlr/nostruct-align/1rlr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30550/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.898804 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rlw id: 1rlw alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rlw/nostruct-align/1rlw.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rlw/nostruct-align/1rlw.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rlw/nostruct-align/1rlw.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13989/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.385864 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rmd id: 1rmd alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rmd/nostruct-align/1rmd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rmd/nostruct-align/1rmd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rmd/nostruct-align/1rmd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-305/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -21.481934 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rmg id: 1rmg alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rmg/nostruct-align/1rmg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rmg/nostruct-align/1rmg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rmg/nostruct-align/1rmg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14068/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.348877 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rmi id: 1rmi alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rmi/nostruct-align/1rmi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rmi/nostruct-align/1rmi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rmi/nostruct-align/1rmi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9644/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.732910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rmvA id: 1rmvA alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rmvA/nostruct-align/1rmvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rmvA/nostruct-align/1rmvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rmvA/nostruct-align/1rmvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32483/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.952881 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rnd id: 1rnd alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rnd/nostruct-align/1rnd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rnd/nostruct-align/1rnd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rnd/nostruct-align/1rnd.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15525/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.053955 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rom id: 1rom alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rom/nostruct-align/1rom.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rom/nostruct-align/1rom.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rom/nostruct-align/1rom.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3894/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.540894 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ron id: 1ron alignment found: /projects/compbio/experiments/models.97/pdb/1r/1ron/nostruct-align/1ron.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1ron/nostruct-align/1ron.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1ron/nostruct-align/1ron.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27462/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.770874 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1roo id: 1roo alignment found: /projects/compbio/experiments/models.97/pdb/1r/1roo/nostruct-align/1roo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1roo/nostruct-align/1roo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1roo/nostruct-align/1roo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8351/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.035889 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rpa id: 1rpa alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rpa/nostruct-align/1rpa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rpa/nostruct-align/1rpa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rpa/nostruct-align/1rpa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21159/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.238892 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rpjA id: 1rpjA alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rpjA/nostruct-align/1rpjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rpjA/nostruct-align/1rpjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rpjA/nostruct-align/1rpjA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23526/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.427979 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rpl id: 1rpl alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rpl/nostruct-align/1rpl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rpl/nostruct-align/1rpl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rpl/nostruct-align/1rpl.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-4181/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.666870 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rpo id: 1rpo alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rpo/nostruct-align/1rpo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rpo/nostruct-align/1rpo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rpo/nostruct-align/1rpo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21811/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.314941 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rpxA id: 1rpxA alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rpxA/nostruct-align/1rpxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rpxA/nostruct-align/1rpxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rpxA/nostruct-align/1rpxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30351/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.372925 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rro id: 1rro alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rro/nostruct-align/1rro.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rro/nostruct-align/1rro.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rro/nostruct-align/1rro.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18407/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.740967 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rrpB id: 1rrpB alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rrpB/nostruct-align/1rrpB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rrpB/nostruct-align/1rrpB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rrpB/nostruct-align/1rrpB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25757/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.102905 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rss id: 1rss alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rss/nostruct-align/1rss.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rss/nostruct-align/1rss.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rss/nostruct-align/1rss.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20697/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.316895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rsy id: 1rsy alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rsy/nostruct-align/1rsy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rsy/nostruct-align/1rsy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rsy/nostruct-align/1rsy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30876/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.384888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rthA id: 1rthA alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rthA/nostruct-align/1rthA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rthA/nostruct-align/1rthA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rthA/nostruct-align/1rthA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8211/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.860840 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rtm1 id: 1rtm1 alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rtm1/nostruct-align/1rtm1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rtm1/nostruct-align/1rtm1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rtm1/nostruct-align/1rtm1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18267/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.970947 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rtm1_1 id: 1rtm1_1 alignment found: /projects/compbio4/experiments/models.97/domains/1r/1rtm1_1/nostruct-align/1rtm1_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1r/1rtm1_1/nostruct-align/1rtm1_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1r/1rtm1_1/nostruct-align/1rtm1_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16368/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.630859 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rtu id: 1rtu alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rtu/nostruct-align/1rtu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rtu/nostruct-align/1rtu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rtu/nostruct-align/1rtu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9059/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.688843 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rusA id: 1rusA alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rusA/nostruct-align/1rusA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rusA/nostruct-align/1rusA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rusA/nostruct-align/1rusA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29354/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.623901 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rvaA id: 1rvaA alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rvaA/nostruct-align/1rvaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rvaA/nostruct-align/1rvaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rvaA/nostruct-align/1rvaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32427/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.026855 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rvv1 id: 1rvv1 alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rvv1/nostruct-align/1rvv1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rvv1/nostruct-align/1rvv1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rvv1/nostruct-align/1rvv1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16043/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.574829 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ryc id: 1ryc alignment found: /projects/compbio/experiments/models.97/pdb/1r/1ryc/nostruct-align/1ryc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1ryc/nostruct-align/1ryc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1ryc/nostruct-align/1ryc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9606/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.644897 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ryp1 id: 1ryp1 alignment found: /projects/compbio/experiments/models.97/pdb/1r/1ryp1/nostruct-align/1ryp1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1ryp1/nostruct-align/1ryp1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1ryp1/nostruct-align/1ryp1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14195/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.807861 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ryp2 id: 1ryp2 alignment found: /projects/compbio/experiments/models.97/pdb/1r/1ryp2/nostruct-align/1ryp2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1ryp2/nostruct-align/1ryp2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1ryp2/nostruct-align/1ryp2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-791/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.267944 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rypB id: 1rypB alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rypB/nostruct-align/1rypB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rypB/nostruct-align/1rypB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rypB/nostruct-align/1rypB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9726/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.425903 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rypC id: 1rypC alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rypC/nostruct-align/1rypC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rypC/nostruct-align/1rypC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rypC/nostruct-align/1rypC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15736/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.278931 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rypD id: 1rypD alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rypD/nostruct-align/1rypD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rypD/nostruct-align/1rypD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rypD/nostruct-align/1rypD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7013/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.472900 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rypE id: 1rypE alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rypE/nostruct-align/1rypE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rypE/nostruct-align/1rypE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rypE/nostruct-align/1rypE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3348/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.099976 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rypF id: 1rypF alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rypF/nostruct-align/1rypF.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rypF/nostruct-align/1rypF.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rypF/nostruct-align/1rypF.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7924/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.368896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ryt id: 1ryt alignment found: /projects/compbio/experiments/models.97/pdb/1r/1ryt/nostruct-align/1ryt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1ryt/nostruct-align/1ryt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1ryt/nostruct-align/1ryt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22648/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.469849 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1rzl id: 1rzl alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rzl/nostruct-align/1rzl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rzl/nostruct-align/1rzl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1r/1rzl/nostruct-align/1rzl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14102/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.471802 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1s01 id: 1s01 alignment found: /projects/compbio/experiments/models.97/pdb/1s/1s01/nostruct-align/1s01.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1s01/nostruct-align/1s01.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1s01/nostruct-align/1s01.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7402/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.175903 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sacA id: 1sacA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sacA/nostruct-align/1sacA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sacA/nostruct-align/1sacA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sacA/nostruct-align/1sacA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16009/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.216919 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sat id: 1sat alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sat/nostruct-align/1sat.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sat/nostruct-align/1sat.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sat/nostruct-align/1sat.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13651/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.072876 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sayA id: 1sayA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sayA/nostruct-align/1sayA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sayA/nostruct-align/1sayA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sayA/nostruct-align/1sayA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18155/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.602905 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sbp id: 1sbp alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sbp/nostruct-align/1sbp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sbp/nostruct-align/1sbp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sbp/nostruct-align/1sbp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21812/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.741943 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sbwI id: 1sbwI alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sbwI/nostruct-align/1sbwI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sbwI/nostruct-align/1sbwI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sbwI/nostruct-align/1sbwI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14995/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -4.579956 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sceA id: 1sceA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sceA/nostruct-align/1sceA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sceA/nostruct-align/1sceA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sceA/nostruct-align/1sceA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-10396/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.503784 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1scjB id: 1scjB alignment found: /projects/compbio/experiments/models.97/pdb/1s/1scjB/nostruct-align/1scjB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1scjB/nostruct-align/1scjB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1scjB/nostruct-align/1scjB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17368/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.022827 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1scmA id: 1scmA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1scmA/nostruct-align/1scmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1scmA/nostruct-align/1scmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1scmA/nostruct-align/1scmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28775/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.757812 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1scmB id: 1scmB alignment found: /projects/compbio/experiments/models.97/pdb/1s/1scmB/nostruct-align/1scmB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1scmB/nostruct-align/1scmB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1scmB/nostruct-align/1scmB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-11767/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.233887 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sco id: 1sco alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sco/nostruct-align/1sco.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sco/nostruct-align/1sco.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sco/nostruct-align/1sco.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20558/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.039917 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1scs id: 1scs alignment found: /projects/compbio/experiments/models.97/pdb/1s/1scs/nostruct-align/1scs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1scs/nostruct-align/1scs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1scs/nostruct-align/1scs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1952/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.593994 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1scuA id: 1scuA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1scuA/nostruct-align/1scuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1scuA/nostruct-align/1scuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1scuA/nostruct-align/1scuA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9493/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.846924 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1scuA_1 id: 1scuA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1s/1scuA_1/nostruct-align/1scuA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1s/1scuA_1/nostruct-align/1scuA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1s/1scuA_1/nostruct-align/1scuA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5791/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.339844 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1scuA_2 id: 1scuA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1s/1scuA_2/nostruct-align/1scuA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1s/1scuA_2/nostruct-align/1scuA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1s/1scuA_2/nostruct-align/1scuA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27510/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.587891 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1scuB_1 id: 1scuB_1 alignment found: /projects/compbio4/experiments/models.97/domains/1s/1scuB_1/nostruct-align/1scuB_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1s/1scuB_1/nostruct-align/1scuB_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1s/1scuB_1/nostruct-align/1scuB_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2446/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.107788 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1scuB_2 id: 1scuB_2 alignment found: /projects/compbio4/experiments/models.97/domains/1s/1scuB_2/nostruct-align/1scuB_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1s/1scuB_2/nostruct-align/1scuB_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1s/1scuB_2/nostruct-align/1scuB_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15966/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.523804 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1se2_1 id: 1se2_1 alignment found: /projects/compbio4/experiments/models.97/domains/1s/1se2_1/nostruct-align/1se2_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1s/1se2_1/nostruct-align/1se2_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1s/1se2_1/nostruct-align/1se2_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24502/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.911865 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1se2_2 id: 1se2_2 alignment found: /projects/compbio4/experiments/models.97/domains/1s/1se2_2/nostruct-align/1se2_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1s/1se2_2/nostruct-align/1se2_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1s/1se2_2/nostruct-align/1se2_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6741/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.375977 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1seiA id: 1seiA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1seiA/nostruct-align/1seiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1seiA/nostruct-align/1seiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1seiA/nostruct-align/1seiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21900/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.122925 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sek id: 1sek alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sek/nostruct-align/1sek.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sek/nostruct-align/1sek.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sek/nostruct-align/1sek.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23009/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.903931 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1semA id: 1semA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1semA/nostruct-align/1semA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1semA/nostruct-align/1semA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1semA/nostruct-align/1semA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7621/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.074951 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sesA id: 1sesA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sesA/nostruct-align/1sesA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sesA/nostruct-align/1sesA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sesA/nostruct-align/1sesA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30043/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.276978 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1setA_1 id: 1setA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1s/1setA_1/nostruct-align/1setA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1s/1setA_1/nostruct-align/1setA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1s/1setA_1/nostruct-align/1setA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32471/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.947876 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1setA_2 id: 1setA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1s/1setA_2/nostruct-align/1setA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1s/1setA_2/nostruct-align/1setA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1s/1setA_2/nostruct-align/1setA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1256/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.059937 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sfcA id: 1sfcA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sfcA/nostruct-align/1sfcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sfcA/nostruct-align/1sfcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sfcA/nostruct-align/1sfcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14486/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.918823 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sfcB id: 1sfcB alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sfcB/nostruct-align/1sfcB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sfcB/nostruct-align/1sfcB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sfcB/nostruct-align/1sfcB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9685/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.555908 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sfcC id: 1sfcC alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sfcC/nostruct-align/1sfcC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sfcC/nostruct-align/1sfcC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sfcC/nostruct-align/1sfcC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20814/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.518921 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sfcD id: 1sfcD alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sfcD/nostruct-align/1sfcD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sfcD/nostruct-align/1sfcD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sfcD/nostruct-align/1sfcD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20370/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.221924 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sfcE id: 1sfcE alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sfcE/nostruct-align/1sfcE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sfcE/nostruct-align/1sfcE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sfcE/nostruct-align/1sfcE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3460/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.859009 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sfe id: 1sfe alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sfe/nostruct-align/1sfe.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sfe/nostruct-align/1sfe.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sfe/nostruct-align/1sfe.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13885/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.760864 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sfp id: 1sfp alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sfp/nostruct-align/1sfp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sfp/nostruct-align/1sfp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sfp/nostruct-align/1sfp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8655/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.496826 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sftA id: 1sftA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sftA/nostruct-align/1sftA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sftA/nostruct-align/1sftA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sftA/nostruct-align/1sftA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6526/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.191895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sgc id: 1sgc alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sgc/nostruct-align/1sgc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sgc/nostruct-align/1sgc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sgc/nostruct-align/1sgc.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-9644/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.629883 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sgpE id: 1sgpE alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sgpE/nostruct-align/1sgpE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sgpE/nostruct-align/1sgpE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sgpE/nostruct-align/1sgpE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10356/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.043823 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sgpI id: 1sgpI alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sgpI/nostruct-align/1sgpI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sgpI/nostruct-align/1sgpI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sgpI/nostruct-align/1sgpI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26294/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.845947 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sgt id: 1sgt alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sgt/nostruct-align/1sgt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sgt/nostruct-align/1sgt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sgt/nostruct-align/1sgt.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10122/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.532959 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sh1 id: 1sh1 alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sh1/nostruct-align/1sh1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sh1/nostruct-align/1sh1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sh1/nostruct-align/1sh1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8066/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.628906 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1shaA id: 1shaA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1shaA/nostruct-align/1shaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1shaA/nostruct-align/1shaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1shaA/nostruct-align/1shaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15166/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.384888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1shcA id: 1shcA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1shcA/nostruct-align/1shcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1shcA/nostruct-align/1shcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1shcA/nostruct-align/1shcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16536/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.520996 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1shdA id: 1shdA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1shdA/nostruct-align/1shdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1shdA/nostruct-align/1shdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1shdA/nostruct-align/1shdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26469/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.753784 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1shfA id: 1shfA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1shfA/nostruct-align/1shfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1shfA/nostruct-align/1shfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1shfA/nostruct-align/1shfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13591/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.129883 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1shg id: 1shg alignment found: /projects/compbio/experiments/models.97/pdb/1s/1shg/nostruct-align/1shg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1shg/nostruct-align/1shg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1shg/nostruct-align/1shg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27217/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.005859 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1shkA id: 1shkA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1shkA/nostruct-align/1shkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1shkA/nostruct-align/1shkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1shkA/nostruct-align/1shkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5559/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.938843 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1shsA id: 1shsA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1shsA/nostruct-align/1shsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1shsA/nostruct-align/1shsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1shsA/nostruct-align/1shsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26028/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.490967 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sig id: 1sig alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sig/nostruct-align/1sig.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sig/nostruct-align/1sig.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sig/nostruct-align/1sig.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1647/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.292847 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sis id: 1sis alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sis/nostruct-align/1sis.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sis/nostruct-align/1sis.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sis/nostruct-align/1sis.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3565/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.960815 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1skf id: 1skf alignment found: /projects/compbio/experiments/models.97/pdb/1s/1skf/nostruct-align/1skf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1skf/nostruct-align/1skf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1skf/nostruct-align/1skf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29821/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.972900 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sknP id: 1sknP alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sknP/nostruct-align/1sknP.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sknP/nostruct-align/1sknP.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sknP/nostruct-align/1sknP.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-263/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.052002 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1skyB id: 1skyB alignment found: /projects/compbio/experiments/models.97/pdb/1s/1skyB/nostruct-align/1skyB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1skyB/nostruct-align/1skyB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1skyB/nostruct-align/1skyB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5511/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.979858 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1skyE id: 1skyE alignment found: /projects/compbio/experiments/models.97/pdb/1s/1skyE/nostruct-align/1skyE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1skyE/nostruct-align/1skyE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1skyE/nostruct-align/1skyE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28979/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.386841 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1skz id: 1skz alignment found: /projects/compbio/experiments/models.97/pdb/1s/1skz/nostruct-align/1skz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1skz/nostruct-align/1skz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1skz/nostruct-align/1skz.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14812/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.260010 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1slaA id: 1slaA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1slaA/nostruct-align/1slaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1slaA/nostruct-align/1slaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1slaA/nostruct-align/1slaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28064/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.422852 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sltA id: 1sltA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sltA/nostruct-align/1sltA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sltA/nostruct-align/1sltA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sltA/nostruct-align/1sltA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13573/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.347900 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sltB id: 1sltB alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sltB/nostruct-align/1sltB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sltB/nostruct-align/1sltB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sltB/nostruct-align/1sltB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15058/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.437866 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sluA id: 1sluA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sluA/nostruct-align/1sluA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sluA/nostruct-align/1sluA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sluA/nostruct-align/1sluA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21068/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.083984 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1slvA id: 1slvA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1slvA/nostruct-align/1slvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1slvA/nostruct-align/1slvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1slvA/nostruct-align/1slvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.003906 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sly id: 1sly alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sly/nostruct-align/1sly.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sly/nostruct-align/1sly.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sly/nostruct-align/1sly.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28345/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.246826 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1smd id: 1smd alignment found: /projects/compbio/experiments/models.97/pdb/1s/1smd/nostruct-align/1smd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1smd/nostruct-align/1smd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1smd/nostruct-align/1smd.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5000/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.068970 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1smeA id: 1smeA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1smeA/nostruct-align/1smeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1smeA/nostruct-align/1smeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1smeA/nostruct-align/1smeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31909/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.203003 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1smlA id: 1smlA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1smlA/nostruct-align/1smlA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1smlA/nostruct-align/1smlA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1smlA/nostruct-align/1smlA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3049/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.812988 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1smnA id: 1smnA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1smnA/nostruct-align/1smnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1smnA/nostruct-align/1smnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1smnA/nostruct-align/1smnA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6979/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.628906 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1smpI id: 1smpI alignment found: /projects/compbio/experiments/models.97/pdb/1s/1smpI/nostruct-align/1smpI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1smpI/nostruct-align/1smpI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1smpI/nostruct-align/1smpI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8027/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.817993 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1smrA id: 1smrA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1smrA/nostruct-align/1smrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1smrA/nostruct-align/1smrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1smrA/nostruct-align/1smrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32509/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.678955 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1smtA id: 1smtA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1smtA/nostruct-align/1smtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1smtA/nostruct-align/1smtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1smtA/nostruct-align/1smtA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27006/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.532959 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1smtB id: 1smtB alignment found: /projects/compbio/experiments/models.97/pdb/1s/1smtB/nostruct-align/1smtB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1smtB/nostruct-align/1smtB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1smtB/nostruct-align/1smtB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1004/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.083862 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1smvA id: 1smvA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1smvA/nostruct-align/1smvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1smvA/nostruct-align/1smvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1smvA/nostruct-align/1smvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6408/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.132812 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sn4A id: 1sn4A alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sn4A/nostruct-align/1sn4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sn4A/nostruct-align/1sn4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sn4A/nostruct-align/1sn4A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25421/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.732910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1snc id: 1snc alignment found: /projects/compbio/experiments/models.97/pdb/1s/1snc/nostruct-align/1snc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1snc/nostruct-align/1snc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1snc/nostruct-align/1snc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31072/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.013916 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1soxA id: 1soxA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1soxA/nostruct-align/1soxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1soxA/nostruct-align/1soxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1soxA/nostruct-align/1soxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7176/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.203857 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1spa id: 1spa alignment found: /projects/compbio/experiments/models.97/pdb/1s/1spa/nostruct-align/1spa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1spa/nostruct-align/1spa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1spa/nostruct-align/1spa.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24279/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.618896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1spbP id: 1spbP alignment found: /projects/compbio/experiments/models.97/pdb/1s/1spbP/nostruct-align/1spbP.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1spbP/nostruct-align/1spbP.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1spbP/nostruct-align/1spbP.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24103/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.548950 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1spf id: 1spf alignment found: /projects/compbio/experiments/models.97/pdb/1s/1spf/nostruct-align/1spf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1spf/nostruct-align/1spf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1spf/nostruct-align/1spf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27323/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -20.048828 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1spgA id: 1spgA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1spgA/nostruct-align/1spgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1spgA/nostruct-align/1spgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1spgA/nostruct-align/1spgA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-12822/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.057861 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1spgB id: 1spgB alignment found: /projects/compbio/experiments/models.97/pdb/1s/1spgB/nostruct-align/1spgB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1spgB/nostruct-align/1spgB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1spgB/nostruct-align/1spgB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-13981/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.325928 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1spuB id: 1spuB alignment found: /projects/compbio/experiments/models.97/pdb/1s/1spuB/nostruct-align/1spuB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1spuB/nostruct-align/1spuB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1spuB/nostruct-align/1spuB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3711/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.912842 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sra id: 1sra alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sra/nostruct-align/1sra.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sra/nostruct-align/1sra.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sra/nostruct-align/1sra.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31866/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.055786 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sriA id: 1sriA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sriA/nostruct-align/1sriA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sriA/nostruct-align/1sriA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sriA/nostruct-align/1sriA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18516/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.821899 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sro id: 1sro alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sro/nostruct-align/1sro.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sro/nostruct-align/1sro.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sro/nostruct-align/1sro.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27024/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.384888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1srrA id: 1srrA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1srrA/nostruct-align/1srrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1srrA/nostruct-align/1srrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1srrA/nostruct-align/1srrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-976/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.358887 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sso id: 1sso alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sso/nostruct-align/1sso.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sso/nostruct-align/1sso.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sso/nostruct-align/1sso.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28493/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.947998 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1std id: 1std alignment found: /projects/compbio/experiments/models.97/pdb/1s/1std/nostruct-align/1std.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1std/nostruct-align/1std.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1std/nostruct-align/1std.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29116/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.127930 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1stfI id: 1stfI alignment found: /projects/compbio/experiments/models.97/pdb/1s/1stfI/nostruct-align/1stfI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1stfI/nostruct-align/1stfI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1stfI/nostruct-align/1stfI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9295/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.819946 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1stmA id: 1stmA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1stmA/nostruct-align/1stmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1stmA/nostruct-align/1stmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1stmA/nostruct-align/1stmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31488/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.980835 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1stu id: 1stu alignment found: /projects/compbio/experiments/models.97/pdb/1s/1stu/nostruct-align/1stu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1stu/nostruct-align/1stu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1stu/nostruct-align/1stu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13211/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.999878 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sty id: 1sty alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sty/nostruct-align/1sty.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sty/nostruct-align/1sty.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sty/nostruct-align/1sty.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-12382/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.473877 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sup id: 1sup alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sup/nostruct-align/1sup.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sup/nostruct-align/1sup.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sup/nostruct-align/1sup.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15142/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.202881 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sur id: 1sur alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sur/nostruct-align/1sur.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sur/nostruct-align/1sur.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sur/nostruct-align/1sur.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17121/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.607910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1svb id: 1svb alignment found: /projects/compbio/experiments/models.97/pdb/1s/1svb/nostruct-align/1svb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1svb/nostruct-align/1svb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1svb/nostruct-align/1svb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31565/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.120850 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1svfA id: 1svfA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1svfA/nostruct-align/1svfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1svfA/nostruct-align/1svfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1svfA/nostruct-align/1svfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27005/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.138916 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1svfB id: 1svfB alignment found: /projects/compbio/experiments/models.97/pdb/1s/1svfB/nostruct-align/1svfB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1svfB/nostruct-align/1svfB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1svfB/nostruct-align/1svfB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7575/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.413818 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1svpA id: 1svpA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1svpA/nostruct-align/1svpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1svpA/nostruct-align/1svpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1svpA/nostruct-align/1svpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20450/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.904907 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1svq id: 1svq alignment found: /projects/compbio/experiments/models.97/pdb/1s/1svq/nostruct-align/1svq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1svq/nostruct-align/1svq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1svq/nostruct-align/1svq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26836/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.467896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1svr id: 1svr alignment found: /projects/compbio/experiments/models.97/pdb/1s/1svr/nostruct-align/1svr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1svr/nostruct-align/1svr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1svr/nostruct-align/1svr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5304/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.778809 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1svy id: 1svy alignment found: /projects/compbio/experiments/models.97/pdb/1s/1svy/nostruct-align/1svy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1svy/nostruct-align/1svy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1svy/nostruct-align/1svy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28384/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.885010 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sw6A id: 1sw6A alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sw6A/nostruct-align/1sw6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sw6A/nostruct-align/1sw6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sw6A/nostruct-align/1sw6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29975/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.732910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1swuA id: 1swuA alignment found: /projects/compbio/experiments/models.97/pdb/1s/1swuA/nostruct-align/1swuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1swuA/nostruct-align/1swuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1swuA/nostruct-align/1swuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7060/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.942993 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1sxl id: 1sxl alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sxl/nostruct-align/1sxl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sxl/nostruct-align/1sxl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1sxl/nostruct-align/1sxl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24042/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.868896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1szt id: 1szt alignment found: /projects/compbio/experiments/models.97/pdb/1s/1szt/nostruct-align/1szt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1szt/nostruct-align/1szt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1s/1szt/nostruct-align/1szt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22389/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.319824 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1t1dA id: 1t1dA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1t1dA/nostruct-align/1t1dA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1t1dA/nostruct-align/1t1dA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1t1dA/nostruct-align/1t1dA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30182/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.842896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1t7pA id: 1t7pA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1t7pA/nostruct-align/1t7pA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1t7pA/nostruct-align/1t7pA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1t7pA/nostruct-align/1t7pA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15848/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.782959 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tabI id: 1tabI alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tabI/nostruct-align/1tabI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tabI/nostruct-align/1tabI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tabI/nostruct-align/1tabI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1263/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.471802 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tac id: 1tac alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tac/nostruct-align/1tac.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tac/nostruct-align/1tac.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tac/nostruct-align/1tac.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20494/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.348877 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tadA_1 id: 1tadA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1t/1tadA_1/nostruct-align/1tadA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1t/1tadA_1/nostruct-align/1tadA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1t/1tadA_1/nostruct-align/1tadA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8512/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.218872 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tadA_2 id: 1tadA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1t/1tadA_2/nostruct-align/1tadA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1t/1tadA_2/nostruct-align/1tadA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1t/1tadA_2/nostruct-align/1tadA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17123/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.090942 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tafA id: 1tafA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tafA/nostruct-align/1tafA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tafA/nostruct-align/1tafA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tafA/nostruct-align/1tafA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26948/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.647949 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tafB id: 1tafB alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tafB/nostruct-align/1tafB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tafB/nostruct-align/1tafB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tafB/nostruct-align/1tafB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17821/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.797852 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tag id: 1tag alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tag/nostruct-align/1tag.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tag/nostruct-align/1tag.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tag/nostruct-align/1tag.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29266/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.498901 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tahA id: 1tahA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tahA/nostruct-align/1tahA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tahA/nostruct-align/1tahA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tahA/nostruct-align/1tahA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32433/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.372925 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tahB id: 1tahB alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tahB/nostruct-align/1tahB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tahB/nostruct-align/1tahB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tahB/nostruct-align/1tahB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30892/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.567871 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tam id: 1tam alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tam/nostruct-align/1tam.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tam/nostruct-align/1tam.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tam/nostruct-align/1tam.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16225/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.876953 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tap id: 1tap alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tap/nostruct-align/1tap.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tap/nostruct-align/1tap.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tap/nostruct-align/1tap.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31379/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.796875 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1taq id: 1taq alignment found: /projects/compbio/experiments/models.97/pdb/1t/1taq/nostruct-align/1taq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1taq/nostruct-align/1taq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1taq/nostruct-align/1taq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29111/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.795898 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1taxA id: 1taxA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1taxA/nostruct-align/1taxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1taxA/nostruct-align/1taxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1taxA/nostruct-align/1taxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13132/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.657837 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tbaA id: 1tbaA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tbaA/nostruct-align/1tbaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tbaA/nostruct-align/1tbaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tbaA/nostruct-align/1tbaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29493/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.663940 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tbgA id: 1tbgA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tbgA/nostruct-align/1tbgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tbgA/nostruct-align/1tbgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tbgA/nostruct-align/1tbgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26706/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -20.370850 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tbgE id: 1tbgE alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tbgE/nostruct-align/1tbgE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tbgE/nostruct-align/1tbgE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tbgE/nostruct-align/1tbgE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1415/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.548828 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tbn id: 1tbn alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tbn/nostruct-align/1tbn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tbn/nostruct-align/1tbn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tbn/nostruct-align/1tbn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6938/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.048950 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tbrR id: 1tbrR alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tbrR/nostruct-align/1tbrR.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tbrR/nostruct-align/1tbrR.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tbrR/nostruct-align/1tbrR.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29957/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.324951 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tc1A id: 1tc1A alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tc1A/nostruct-align/1tc1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tc1A/nostruct-align/1tc1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tc1A/nostruct-align/1tc1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5256/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.819824 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tc3C id: 1tc3C alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tc3C/nostruct-align/1tc3C.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tc3C/nostruct-align/1tc3C.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tc3C/nostruct-align/1tc3C.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13041/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.208862 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tca id: 1tca alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tca/nostruct-align/1tca.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tca/nostruct-align/1tca.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tca/nostruct-align/1tca.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12624/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.929810 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tcrA id: 1tcrA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tcrA/nostruct-align/1tcrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tcrA/nostruct-align/1tcrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tcrA/nostruct-align/1tcrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31205/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.477905 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tde_1 id: 1tde_1 alignment found: /projects/compbio4/experiments/models.97/domains/1t/1tde_1/nostruct-align/1tde_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1t/1tde_1/nostruct-align/1tde_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1t/1tde_1/nostruct-align/1tde_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2882/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.400879 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tde_2 id: 1tde_2 alignment found: /projects/compbio4/experiments/models.97/domains/1t/1tde_2/nostruct-align/1tde_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1t/1tde_2/nostruct-align/1tde_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1t/1tde_2/nostruct-align/1tde_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9959/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.223877 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tdj id: 1tdj alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tdj/nostruct-align/1tdj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tdj/nostruct-align/1tdj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tdj/nostruct-align/1tdj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20560/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.075928 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tdtA id: 1tdtA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tdtA/nostruct-align/1tdtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tdtA/nostruct-align/1tdtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tdtA/nostruct-align/1tdtA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17802/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.625977 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ten id: 1ten alignment found: /projects/compbio/experiments/models.97/pdb/1t/1ten/nostruct-align/1ten.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1ten/nostruct-align/1ten.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1ten/nostruct-align/1ten.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16298/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.765869 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tetL id: 1tetL alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tetL/nostruct-align/1tetL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tetL/nostruct-align/1tetL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tetL/nostruct-align/1tetL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5430/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.837891 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tf4A id: 1tf4A alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tf4A/nostruct-align/1tf4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tf4A/nostruct-align/1tf4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tf4A/nostruct-align/1tf4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7222/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.385986 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tf6A id: 1tf6A alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tf6A/nostruct-align/1tf6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tf6A/nostruct-align/1tf6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tf6A/nostruct-align/1tf6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17750/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -27.069946 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tfa id: 1tfa alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tfa/nostruct-align/1tfa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tfa/nostruct-align/1tfa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tfa/nostruct-align/1tfa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7462/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.898926 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tfb id: 1tfb alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tfb/nostruct-align/1tfb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tfb/nostruct-align/1tfb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tfb/nostruct-align/1tfb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19328/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.513916 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tfe id: 1tfe alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tfe/nostruct-align/1tfe.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tfe/nostruct-align/1tfe.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tfe/nostruct-align/1tfe.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14981/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.115967 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tfg id: 1tfg alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tfg/nostruct-align/1tfg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tfg/nostruct-align/1tfg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tfg/nostruct-align/1tfg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26543/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.085938 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tfi id: 1tfi alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tfi/nostruct-align/1tfi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tfi/nostruct-align/1tfi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tfi/nostruct-align/1tfi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6085/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.198853 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tfpA id: 1tfpA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tfpA/nostruct-align/1tfpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tfpA/nostruct-align/1tfpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tfpA/nostruct-align/1tfpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13310/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.570923 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tfr id: 1tfr alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tfr/nostruct-align/1tfr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tfr/nostruct-align/1tfr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tfr/nostruct-align/1tfr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9584/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.741943 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tgoA id: 1tgoA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tgoA/nostruct-align/1tgoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tgoA/nostruct-align/1tgoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tgoA/nostruct-align/1tgoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29192/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.649902 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tgsI id: 1tgsI alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tgsI/nostruct-align/1tgsI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tgsI/nostruct-align/1tgsI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tgsI/nostruct-align/1tgsI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22735/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.848877 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tgxA id: 1tgxA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tgxA/nostruct-align/1tgxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tgxA/nostruct-align/1tgxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tgxA/nostruct-align/1tgxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4661/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.555908 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1theA id: 1theA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1theA/nostruct-align/1theA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1theA/nostruct-align/1theA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1theA/nostruct-align/1theA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25980/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.369995 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1theB id: 1theB alignment found: /projects/compbio/experiments/models.97/pdb/1t/1theB/nostruct-align/1theB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1theB/nostruct-align/1theB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1theB/nostruct-align/1theB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17700/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.299927 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1thg id: 1thg alignment found: /projects/compbio/experiments/models.97/pdb/1t/1thg/nostruct-align/1thg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1thg/nostruct-align/1thg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1thg/nostruct-align/1thg.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-527/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.180908 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1thjA id: 1thjA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1thjA/nostruct-align/1thjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1thjA/nostruct-align/1thjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1thjA/nostruct-align/1thjA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2101/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.070801 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1thm id: 1thm alignment found: /projects/compbio/experiments/models.97/pdb/1t/1thm/nostruct-align/1thm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1thm/nostruct-align/1thm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1thm/nostruct-align/1thm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13228/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.797974 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1thtA id: 1thtA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1thtA/nostruct-align/1thtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1thtA/nostruct-align/1thtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1thtA/nostruct-align/1thtA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6253/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.578857 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1thv id: 1thv alignment found: /projects/compbio/experiments/models.97/pdb/1t/1thv/nostruct-align/1thv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1thv/nostruct-align/1thv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1thv/nostruct-align/1thv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25201/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.357910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1thw id: 1thw alignment found: /projects/compbio/experiments/models.97/pdb/1t/1thw/nostruct-align/1thw.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1thw/nostruct-align/1thw.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1thw/nostruct-align/1thw.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8673/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.358887 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1thx id: 1thx alignment found: /projects/compbio/experiments/models.97/pdb/1t/1thx/nostruct-align/1thx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1thx/nostruct-align/1thx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1thx/nostruct-align/1thx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1152/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.144897 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tia id: 1tia alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tia/nostruct-align/1tia.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tia/nostruct-align/1tia.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tia/nostruct-align/1tia.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file ./tmp/tmp-build-weighted-model-purr-5011/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.351929 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tib id: 1tib alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tib/nostruct-align/1tib.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tib/nostruct-align/1tib.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tib/nostruct-align/1tib.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1486/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.987915 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tie id: 1tie alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tie/nostruct-align/1tie.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tie/nostruct-align/1tie.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tie/nostruct-align/1tie.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-12319/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.298828 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tif id: 1tif alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tif/nostruct-align/1tif.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tif/nostruct-align/1tif.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tif/nostruct-align/1tif.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20142/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.058838 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tig id: 1tig alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tig/nostruct-align/1tig.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tig/nostruct-align/1tig.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tig/nostruct-align/1tig.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14346/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.759888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tiiC id: 1tiiC alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tiiC/nostruct-align/1tiiC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tiiC/nostruct-align/1tiiC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tiiC/nostruct-align/1tiiC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19220/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.606812 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tiiD id: 1tiiD alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tiiD/nostruct-align/1tiiD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tiiD/nostruct-align/1tiiD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tiiD/nostruct-align/1tiiD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6792/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.491943 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tin id: 1tin alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tin/nostruct-align/1tin.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tin/nostruct-align/1tin.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tin/nostruct-align/1tin.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-7167/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.845825 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tit id: 1tit alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tit/nostruct-align/1tit.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tit/nostruct-align/1tit.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tit/nostruct-align/1tit.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28488/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.387817 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tiu id: 1tiu alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tiu/nostruct-align/1tiu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tiu/nostruct-align/1tiu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tiu/nostruct-align/1tiu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32457/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.607910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tiv id: 1tiv alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tiv/nostruct-align/1tiv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tiv/nostruct-align/1tiv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tiv/nostruct-align/1tiv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30642/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.417969 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tkaA id: 1tkaA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tkaA/nostruct-align/1tkaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tkaA/nostruct-align/1tkaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tkaA/nostruct-align/1tkaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31942/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.206909 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tkiA id: 1tkiA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tkiA/nostruct-align/1tkiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tkiA/nostruct-align/1tkiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tkiA/nostruct-align/1tkiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8433/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.829956 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tl2A id: 1tl2A alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tl2A/nostruct-align/1tl2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tl2A/nostruct-align/1tl2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tl2A/nostruct-align/1tl2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12352/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.759888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tle id: 1tle alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tle/nostruct-align/1tle.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tle/nostruct-align/1tle.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tle/nostruct-align/1tle.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7902/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.349976 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tlfA id: 1tlfA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tlfA/nostruct-align/1tlfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tlfA/nostruct-align/1tlfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tlfA/nostruct-align/1tlfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1241/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.236816 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tlk id: 1tlk alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tlk/nostruct-align/1tlk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tlk/nostruct-align/1tlk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tlk/nostruct-align/1tlk.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9343/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.185913 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tme1 id: 1tme1 alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tme1/nostruct-align/1tme1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tme1/nostruct-align/1tme1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tme1/nostruct-align/1tme1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25265/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.430908 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tmf4 id: 1tmf4 alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tmf4/nostruct-align/1tmf4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tmf4/nostruct-align/1tmf4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tmf4/nostruct-align/1tmf4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27594/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.094849 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tml id: 1tml alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tml/nostruct-align/1tml.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tml/nostruct-align/1tml.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tml/nostruct-align/1tml.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15434/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.968872 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tmy id: 1tmy alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tmy/nostruct-align/1tmy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tmy/nostruct-align/1tmy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tmy/nostruct-align/1tmy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17498/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.124878 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tmzA id: 1tmzA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tmzA/nostruct-align/1tmzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tmzA/nostruct-align/1tmzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tmzA/nostruct-align/1tmzA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25239/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.797974 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tnfA id: 1tnfA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tnfA/nostruct-align/1tnfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tnfA/nostruct-align/1tnfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tnfA/nostruct-align/1tnfA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-11989/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.603882 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tnm id: 1tnm alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tnm/nostruct-align/1tnm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tnm/nostruct-align/1tnm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tnm/nostruct-align/1tnm.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-31041/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.978882 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tnrA id: 1tnrA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tnrA/nostruct-align/1tnrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tnrA/nostruct-align/1tnrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tnrA/nostruct-align/1tnrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26137/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.086914 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tns id: 1tns alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tns/nostruct-align/1tns.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tns/nostruct-align/1tns.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tns/nostruct-align/1tns.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8816/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.617920 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1toaA id: 1toaA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1toaA/nostruct-align/1toaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1toaA/nostruct-align/1toaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1toaA/nostruct-align/1toaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5433/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.133911 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tocR id: 1tocR alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tocR/nostruct-align/1tocR.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tocR/nostruct-align/1tocR.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tocR/nostruct-align/1tocR.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22317/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.705933 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1toh id: 1toh alignment found: /projects/compbio/experiments/models.97/pdb/1t/1toh/nostruct-align/1toh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1toh/nostruct-align/1toh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1toh/nostruct-align/1toh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31913/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.898926 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ton id: 1ton alignment found: /projects/compbio/experiments/models.97/pdb/1t/1ton/nostruct-align/1ton.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1ton/nostruct-align/1ton.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1ton/nostruct-align/1ton.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12007/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.684937 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tpfA id: 1tpfA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tpfA/nostruct-align/1tpfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tpfA/nostruct-align/1tpfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tpfA/nostruct-align/1tpfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16474/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.565918 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tpg id: 1tpg alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tpg/nostruct-align/1tpg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tpg/nostruct-align/1tpg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tpg/nostruct-align/1tpg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30234/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.892944 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tpg_1 id: 1tpg_1 alignment found: /projects/compbio4/experiments/models.97/domains/1t/1tpg_1/nostruct-align/1tpg_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1t/1tpg_1/nostruct-align/1tpg_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1t/1tpg_1/nostruct-align/1tpg_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15793/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.992920 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tpg_2 id: 1tpg_2 alignment found: /projects/compbio4/experiments/models.97/domains/1t/1tpg_2/nostruct-align/1tpg_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1t/1tpg_2/nostruct-align/1tpg_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1t/1tpg_2/nostruct-align/1tpg_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28130/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.464966 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tph1 id: 1tph1 alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tph1/nostruct-align/1tph1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tph1/nostruct-align/1tph1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tph1/nostruct-align/1tph1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18848/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.777954 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tplA id: 1tplA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tplA/nostruct-align/1tplA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tplA/nostruct-align/1tplA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tplA/nostruct-align/1tplA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2344/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.312866 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tpm id: 1tpm alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tpm/nostruct-align/1tpm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tpm/nostruct-align/1tpm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tpm/nostruct-align/1tpm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20214/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.464966 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tpt id: 1tpt alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tpt/nostruct-align/1tpt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tpt/nostruct-align/1tpt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tpt/nostruct-align/1tpt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16532/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.988892 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1trb id: 1trb alignment found: /projects/compbio/experiments/models.97/pdb/1t/1trb/nostruct-align/1trb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1trb/nostruct-align/1trb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1trb/nostruct-align/1trb.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7104/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -19.332886 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1trkA id: 1trkA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1trkA/nostruct-align/1trkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1trkA/nostruct-align/1trkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1trkA/nostruct-align/1trkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8456/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.734863 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1trkA_1 id: 1trkA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1t/1trkA_1/nostruct-align/1trkA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1t/1trkA_1/nostruct-align/1trkA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1t/1trkA_1/nostruct-align/1trkA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5762/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.696899 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1trkA_2 id: 1trkA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1t/1trkA_2/nostruct-align/1trkA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1t/1trkA_2/nostruct-align/1trkA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1t/1trkA_2/nostruct-align/1trkA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3039/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.879883 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1trkA_3 id: 1trkA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1t/1trkA_3/nostruct-align/1trkA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1t/1trkA_3/nostruct-align/1trkA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1t/1trkA_3/nostruct-align/1trkA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22420/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.148926 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1try id: 1try alignment found: /projects/compbio/experiments/models.97/pdb/1t/1try/nostruct-align/1try.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1try/nostruct-align/1try.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1try/nostruct-align/1try.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16441/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.593872 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tsg id: 1tsg alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tsg/nostruct-align/1tsg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tsg/nostruct-align/1tsg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tsg/nostruct-align/1tsg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9012/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.432861 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tsm id: 1tsm alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tsm/nostruct-align/1tsm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tsm/nostruct-align/1tsm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tsm/nostruct-align/1tsm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5465/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.730957 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tsp id: 1tsp alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tsp/nostruct-align/1tsp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tsp/nostruct-align/1tsp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tsp/nostruct-align/1tsp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4800/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.761841 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tssA_1 id: 1tssA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1t/1tssA_1/nostruct-align/1tssA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1t/1tssA_1/nostruct-align/1tssA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1t/1tssA_1/nostruct-align/1tssA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15046/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.001953 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tssA_2 id: 1tssA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1t/1tssA_2/nostruct-align/1tssA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1t/1tssA_2/nostruct-align/1tssA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1t/1tssA_2/nostruct-align/1tssA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26701/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.332886 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ttbA id: 1ttbA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1ttbA/nostruct-align/1ttbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1ttbA/nostruct-align/1ttbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1ttbA/nostruct-align/1ttbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2730/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.404907 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tubA id: 1tubA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tubA/nostruct-align/1tubA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tubA/nostruct-align/1tubA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tubA/nostruct-align/1tubA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24688/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.435913 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tuc id: 1tuc alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tuc/nostruct-align/1tuc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tuc/nostruct-align/1tuc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tuc/nostruct-align/1tuc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20149/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.509888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tud id: 1tud alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tud/nostruct-align/1tud.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tud/nostruct-align/1tud.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tud/nostruct-align/1tud.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5588/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.653809 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tul id: 1tul alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tul/nostruct-align/1tul.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tul/nostruct-align/1tul.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tul/nostruct-align/1tul.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8019/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.512939 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tum id: 1tum alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tum/nostruct-align/1tum.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tum/nostruct-align/1tum.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tum/nostruct-align/1tum.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26503/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.195923 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tupA id: 1tupA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tupA/nostruct-align/1tupA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tupA/nostruct-align/1tupA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tupA/nostruct-align/1tupA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9707/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.172852 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tux id: 1tux alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tux/nostruct-align/1tux.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tux/nostruct-align/1tux.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tux/nostruct-align/1tux.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29160/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.984985 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tvdA id: 1tvdA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tvdA/nostruct-align/1tvdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tvdA/nostruct-align/1tvdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tvdA/nostruct-align/1tvdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27427/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.022949 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tvs id: 1tvs alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tvs/nostruct-align/1tvs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tvs/nostruct-align/1tvs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tvs/nostruct-align/1tvs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14299/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.153931 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tvt id: 1tvt alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tvt/nostruct-align/1tvt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tvt/nostruct-align/1tvt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tvt/nostruct-align/1tvt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28983/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.153931 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tvxA id: 1tvxA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tvxA/nostruct-align/1tvxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tvxA/nostruct-align/1tvxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tvxA/nostruct-align/1tvxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10184/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.926880 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tvxB id: 1tvxB alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tvxB/nostruct-align/1tvxB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tvxB/nostruct-align/1tvxB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tvxB/nostruct-align/1tvxB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23752/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.027832 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tx4A id: 1tx4A alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tx4A/nostruct-align/1tx4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tx4A/nostruct-align/1tx4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tx4A/nostruct-align/1tx4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10163/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.011841 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1txb id: 1txb alignment found: /projects/compbio/experiments/models.97/pdb/1t/1txb/nostruct-align/1txb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1txb/nostruct-align/1txb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1txb/nostruct-align/1txb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-955/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.731934 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1txm id: 1txm alignment found: /projects/compbio/experiments/models.97/pdb/1t/1txm/nostruct-align/1txm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1txm/nostruct-align/1txm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1txm/nostruct-align/1txm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-44/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.826904 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tyfA id: 1tyfA alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tyfA/nostruct-align/1tyfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tyfA/nostruct-align/1tyfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tyfA/nostruct-align/1tyfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6534/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.571899 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tys id: 1tys alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tys/nostruct-align/1tys.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tys/nostruct-align/1tys.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tys/nostruct-align/1tys.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21847/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.067871 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1tyv id: 1tyv alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tyv/nostruct-align/1tyv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tyv/nostruct-align/1tyv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1t/1tyv/nostruct-align/1tyv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22469/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.686890 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1u2fA id: 1u2fA alignment found: /projects/compbio/experiments/models.97/pdb/1u/1u2fA/nostruct-align/1u2fA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1u2fA/nostruct-align/1u2fA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1u2fA/nostruct-align/1u2fA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12752/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.691895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1u9aA id: 1u9aA alignment found: /projects/compbio/experiments/models.97/pdb/1u/1u9aA/nostruct-align/1u9aA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1u9aA/nostruct-align/1u9aA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1u9aA/nostruct-align/1u9aA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9065/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.279907 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1uaaA id: 1uaaA alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uaaA/nostruct-align/1uaaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uaaA/nostruct-align/1uaaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1uaaA/nostruct-align/1uaaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13020/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.898926 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1uae id: 1uae alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uae/nostruct-align/1uae.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uae/nostruct-align/1uae.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1uae/nostruct-align/1uae.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9861/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.110840 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1uag id: 1uag alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uag/nostruct-align/1uag.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uag/nostruct-align/1uag.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1uag/nostruct-align/1uag.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23846/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.402832 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ubi id: 1ubi alignment found: /projects/compbio/experiments/models.97/pdb/1u/1ubi/nostruct-align/1ubi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1ubi/nostruct-align/1ubi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1ubi/nostruct-align/1ubi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24885/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.498901 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ubpA id: 1ubpA alignment found: /projects/compbio/experiments/models.97/pdb/1u/1ubpA/nostruct-align/1ubpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1ubpA/nostruct-align/1ubpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1ubpA/nostruct-align/1ubpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-82/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.791992 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ubpB id: 1ubpB alignment found: /projects/compbio/experiments/models.97/pdb/1u/1ubpB/nostruct-align/1ubpB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1ubpB/nostruct-align/1ubpB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1ubpB/nostruct-align/1ubpB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24478/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.648804 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ubpC id: 1ubpC alignment found: /projects/compbio/experiments/models.97/pdb/1u/1ubpC/nostruct-align/1ubpC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1ubpC/nostruct-align/1ubpC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1ubpC/nostruct-align/1ubpC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22502/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -19.421997 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1uby id: 1uby alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uby/nostruct-align/1uby.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uby/nostruct-align/1uby.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1uby/nostruct-align/1uby.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27188/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.552856 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1uch id: 1uch alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uch/nostruct-align/1uch.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uch/nostruct-align/1uch.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1uch/nostruct-align/1uch.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29031/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.573853 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1udc id: 1udc alignment found: /projects/compbio/experiments/models.97/pdb/1u/1udc/nostruct-align/1udc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1udc/nostruct-align/1udc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1udc/nostruct-align/1udc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20119/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.081909 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1udg id: 1udg alignment found: /projects/compbio/experiments/models.97/pdb/1u/1udg/nostruct-align/1udg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1udg/nostruct-align/1udg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1udg/nostruct-align/1udg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17189/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.504883 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1udh id: 1udh alignment found: /projects/compbio/experiments/models.97/pdb/1u/1udh/nostruct-align/1udh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1udh/nostruct-align/1udh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1udh/nostruct-align/1udh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5264/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.479980 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1udiI id: 1udiI alignment found: /projects/compbio/experiments/models.97/pdb/1u/1udiI/nostruct-align/1udiI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1udiI/nostruct-align/1udiI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1udiI/nostruct-align/1udiI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16755/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.897827 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ughI id: 1ughI alignment found: /projects/compbio/experiments/models.97/pdb/1u/1ughI/nostruct-align/1ughI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1ughI/nostruct-align/1ughI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1ughI/nostruct-align/1ughI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31490/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.874878 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ugiA id: 1ugiA alignment found: /projects/compbio/experiments/models.97/pdb/1u/1ugiA/nostruct-align/1ugiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1ugiA/nostruct-align/1ugiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1ugiA/nostruct-align/1ugiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12540/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.897827 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ukz id: 1ukz alignment found: /projects/compbio/experiments/models.97/pdb/1u/1ukz/nostruct-align/1ukz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1ukz/nostruct-align/1ukz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1ukz/nostruct-align/1ukz.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24961/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.621826 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ulo id: 1ulo alignment found: /projects/compbio/experiments/models.97/pdb/1u/1ulo/nostruct-align/1ulo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1ulo/nostruct-align/1ulo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1ulo/nostruct-align/1ulo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17518/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.078979 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ulp id: 1ulp alignment found: /projects/compbio/experiments/models.97/pdb/1u/1ulp/nostruct-align/1ulp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1ulp/nostruct-align/1ulp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1ulp/nostruct-align/1ulp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2321/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.226929 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1umuA id: 1umuA alignment found: /projects/compbio/experiments/models.97/pdb/1u/1umuA/nostruct-align/1umuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1umuA/nostruct-align/1umuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1umuA/nostruct-align/1umuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29761/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.481934 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1umuB id: 1umuB alignment found: /projects/compbio/experiments/models.97/pdb/1u/1umuB/nostruct-align/1umuB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1umuB/nostruct-align/1umuB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1umuB/nostruct-align/1umuB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26021/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.333862 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1une id: 1une alignment found: /projects/compbio/experiments/models.97/pdb/1u/1une/nostruct-align/1une.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1une/nostruct-align/1une.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1une/nostruct-align/1une.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12098/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.633789 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1unkA id: 1unkA alignment found: /projects/compbio/experiments/models.97/pdb/1u/1unkA/nostruct-align/1unkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1unkA/nostruct-align/1unkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1unkA/nostruct-align/1unkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1880/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.687866 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1uok id: 1uok alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uok/nostruct-align/1uok.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uok/nostruct-align/1uok.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1uok/nostruct-align/1uok.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6837/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.718994 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1uox id: 1uox alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uox/nostruct-align/1uox.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uox/nostruct-align/1uox.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1uox/nostruct-align/1uox.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31822/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.765869 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1urnA id: 1urnA alignment found: /projects/compbio/experiments/models.97/pdb/1u/1urnA/nostruct-align/1urnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1urnA/nostruct-align/1urnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1urnA/nostruct-align/1urnA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22963/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.194824 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1uroA id: 1uroA alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uroA/nostruct-align/1uroA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uroA/nostruct-align/1uroA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1uroA/nostruct-align/1uroA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9632/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.660889 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ush id: 1ush alignment found: /projects/compbio/experiments/models.97/pdb/1u/1ush/nostruct-align/1ush.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1ush/nostruct-align/1ush.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1ush/nostruct-align/1ush.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20602/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.844971 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1uteA id: 1uteA alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uteA/nostruct-align/1uteA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uteA/nostruct-align/1uteA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1uteA/nostruct-align/1uteA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28514/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.560913 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1utg id: 1utg alignment found: /projects/compbio/experiments/models.97/pdb/1u/1utg/nostruct-align/1utg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1utg/nostruct-align/1utg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1utg/nostruct-align/1utg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19769/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.410889 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1uwoA id: 1uwoA alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uwoA/nostruct-align/1uwoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uwoA/nostruct-align/1uwoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1uwoA/nostruct-align/1uwoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26822/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.188843 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1uxc id: 1uxc alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uxc/nostruct-align/1uxc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uxc/nostruct-align/1uxc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1uxc/nostruct-align/1uxc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5092/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.190796 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1uxd id: 1uxd alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uxd/nostruct-align/1uxd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uxd/nostruct-align/1uxd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1uxd/nostruct-align/1uxd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30147/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.373901 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1uxy id: 1uxy alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uxy/nostruct-align/1uxy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uxy/nostruct-align/1uxy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1u/1uxy/nostruct-align/1uxy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26754/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.458862 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1v39 id: 1v39 alignment found: /projects/compbio/experiments/models.97/pdb/1v/1v39/nostruct-align/1v39.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1v39/nostruct-align/1v39.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1v39/nostruct-align/1v39.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12611/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.297974 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vapA id: 1vapA alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vapA/nostruct-align/1vapA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vapA/nostruct-align/1vapA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vapA/nostruct-align/1vapA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2984/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.502930 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vbd4 id: 1vbd4 alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vbd4/nostruct-align/1vbd4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vbd4/nostruct-align/1vbd4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vbd4/nostruct-align/1vbd4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1638/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.882812 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vcaA id: 1vcaA alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vcaA/nostruct-align/1vcaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vcaA/nostruct-align/1vcaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vcaA/nostruct-align/1vcaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3563/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -21.826782 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vcaA_1 id: 1vcaA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1v/1vcaA_1/nostruct-align/1vcaA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1v/1vcaA_1/nostruct-align/1vcaA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1v/1vcaA_1/nostruct-align/1vcaA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18925/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.695923 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vcaA_2 id: 1vcaA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1v/1vcaA_2/nostruct-align/1vcaA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1v/1vcaA_2/nostruct-align/1vcaA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1v/1vcaA_2/nostruct-align/1vcaA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4681/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.160889 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vcbA id: 1vcbA alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vcbA/nostruct-align/1vcbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vcbA/nostruct-align/1vcbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vcbA/nostruct-align/1vcbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6359/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.007935 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vcbB id: 1vcbB alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vcbB/nostruct-align/1vcbB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vcbB/nostruct-align/1vcbB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vcbB/nostruct-align/1vcbB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11630/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.718872 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vcbC id: 1vcbC alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vcbC/nostruct-align/1vcbC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vcbC/nostruct-align/1vcbC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vcbC/nostruct-align/1vcbC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11819/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.730835 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vcc id: 1vcc alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vcc/nostruct-align/1vcc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vcc/nostruct-align/1vcc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vcc/nostruct-align/1vcc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7416/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.935913 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vdeA id: 1vdeA alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vdeA/nostruct-align/1vdeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vdeA/nostruct-align/1vdeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vdeA/nostruct-align/1vdeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26732/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.324951 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vdfA id: 1vdfA alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vdfA/nostruct-align/1vdfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vdfA/nostruct-align/1vdfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vdfA/nostruct-align/1vdfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23956/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.957886 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vdrA id: 1vdrA alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vdrA/nostruct-align/1vdrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vdrA/nostruct-align/1vdrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vdrA/nostruct-align/1vdrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4533/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.837891 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vfaB id: 1vfaB alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vfaB/nostruct-align/1vfaB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vfaB/nostruct-align/1vfaB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vfaB/nostruct-align/1vfaB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4335/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.953857 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vfbA id: 1vfbA alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vfbA/nostruct-align/1vfbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vfbA/nostruct-align/1vfbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vfbA/nostruct-align/1vfbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31632/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.625977 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vfrA id: 1vfrA alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vfrA/nostruct-align/1vfrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vfrA/nostruct-align/1vfrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vfrA/nostruct-align/1vfrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9516/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.102905 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vfyA id: 1vfyA alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vfyA/nostruct-align/1vfyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vfyA/nostruct-align/1vfyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vfyA/nostruct-align/1vfyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-371/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.927979 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vhh id: 1vhh alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vhh/nostruct-align/1vhh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vhh/nostruct-align/1vhh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vhh/nostruct-align/1vhh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30398/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.186890 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vhiA id: 1vhiA alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vhiA/nostruct-align/1vhiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vhiA/nostruct-align/1vhiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vhiA/nostruct-align/1vhiA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23066/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.031860 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vhrA id: 1vhrA alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vhrA/nostruct-align/1vhrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vhrA/nostruct-align/1vhrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vhrA/nostruct-align/1vhrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3246/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.681885 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vib id: 1vib alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vib/nostruct-align/1vib.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vib/nostruct-align/1vib.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vib/nostruct-align/1vib.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13666/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.969849 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vid id: 1vid alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vid/nostruct-align/1vid.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vid/nostruct-align/1vid.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vid/nostruct-align/1vid.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32757/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.370972 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vie id: 1vie alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vie/nostruct-align/1vie.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vie/nostruct-align/1vie.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vie/nostruct-align/1vie.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29777/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.415894 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vig id: 1vig alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vig/nostruct-align/1vig.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vig/nostruct-align/1vig.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vig/nostruct-align/1vig.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-153/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.941895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vih id: 1vih alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vih/nostruct-align/1vih.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vih/nostruct-align/1vih.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vih/nostruct-align/1vih.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3872/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.941895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vii id: 1vii alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vii/nostruct-align/1vii.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vii/nostruct-align/1vii.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vii/nostruct-align/1vii.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23340/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.222900 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vin id: 1vin alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vin/nostruct-align/1vin.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vin/nostruct-align/1vin.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vin/nostruct-align/1vin.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14037/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.097900 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vjs id: 1vjs alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vjs/nostruct-align/1vjs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vjs/nostruct-align/1vjs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vjs/nostruct-align/1vjs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8922/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.493896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vjw id: 1vjw alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vjw/nostruct-align/1vjw.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vjw/nostruct-align/1vjw.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vjw/nostruct-align/1vjw.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4891/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.263916 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vkxA id: 1vkxA alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vkxA/nostruct-align/1vkxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vkxA/nostruct-align/1vkxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vkxA/nostruct-align/1vkxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15108/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.716797 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vls id: 1vls alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vls/nostruct-align/1vls.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vls/nostruct-align/1vls.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vls/nostruct-align/1vls.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10134/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.441895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vmoA id: 1vmoA alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vmoA/nostruct-align/1vmoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vmoA/nostruct-align/1vmoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vmoA/nostruct-align/1vmoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5513/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.834961 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vns id: 1vns alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vns/nostruct-align/1vns.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vns/nostruct-align/1vns.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vns/nostruct-align/1vns.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5425/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.892944 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vom id: 1vom alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vom/nostruct-align/1vom.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vom/nostruct-align/1vom.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vom/nostruct-align/1vom.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25251/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.939819 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vpc id: 1vpc alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vpc/nostruct-align/1vpc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vpc/nostruct-align/1vpc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vpc/nostruct-align/1vpc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14341/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.698975 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vpfA id: 1vpfA alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vpfA/nostruct-align/1vpfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vpfA/nostruct-align/1vpfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vpfA/nostruct-align/1vpfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26230/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.605957 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vppX id: 1vppX alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vppX/nostruct-align/1vppX.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vppX/nostruct-align/1vppX.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vppX/nostruct-align/1vppX.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19973/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.359985 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vpsA id: 1vpsA alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vpsA/nostruct-align/1vpsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vpsA/nostruct-align/1vpsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vpsA/nostruct-align/1vpsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20747/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.766968 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vpsB id: 1vpsB alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vpsB/nostruct-align/1vpsB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vpsB/nostruct-align/1vpsB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vpsB/nostruct-align/1vpsB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2052/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.881836 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vpu id: 1vpu alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vpu/nostruct-align/1vpu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vpu/nostruct-align/1vpu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vpu/nostruct-align/1vpu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15648/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.992920 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vqb id: 1vqb alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vqb/nostruct-align/1vqb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vqb/nostruct-align/1vqb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vqb/nostruct-align/1vqb.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-24048/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.668945 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vrkB id: 1vrkB alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vrkB/nostruct-align/1vrkB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vrkB/nostruct-align/1vrkB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vrkB/nostruct-align/1vrkB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18494/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.797852 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vsd id: 1vsd alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vsd/nostruct-align/1vsd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vsd/nostruct-align/1vsd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vsd/nostruct-align/1vsd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29104/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.180908 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vsgA id: 1vsgA alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vsgA/nostruct-align/1vsgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vsgA/nostruct-align/1vsgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vsgA/nostruct-align/1vsgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23446/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.911987 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vsrA id: 1vsrA alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vsrA/nostruct-align/1vsrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vsrA/nostruct-align/1vsrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vsrA/nostruct-align/1vsrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30969/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.576904 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vtmP id: 1vtmP alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vtmP/nostruct-align/1vtmP.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vtmP/nostruct-align/1vtmP.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vtmP/nostruct-align/1vtmP.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17657/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.997925 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1vtx id: 1vtx alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vtx/nostruct-align/1vtx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vtx/nostruct-align/1vtx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1v/1vtx/nostruct-align/1vtx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28108/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.785889 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1wab id: 1wab alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wab/nostruct-align/1wab.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wab/nostruct-align/1wab.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1wab/nostruct-align/1wab.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20527/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.661865 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1wad id: 1wad alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wad/nostruct-align/1wad.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wad/nostruct-align/1wad.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1wad/nostruct-align/1wad.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27898/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.448853 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1wapA id: 1wapA alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wapA/nostruct-align/1wapA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wapA/nostruct-align/1wapA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1wapA/nostruct-align/1wapA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2950/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.063843 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1wba id: 1wba alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wba/nostruct-align/1wba.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wba/nostruct-align/1wba.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1wba/nostruct-align/1wba.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32429/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.483887 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1wdcA id: 1wdcA alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wdcA/nostruct-align/1wdcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wdcA/nostruct-align/1wdcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1wdcA/nostruct-align/1wdcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22592/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.272949 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1wdcB id: 1wdcB alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wdcB/nostruct-align/1wdcB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wdcB/nostruct-align/1wdcB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1wdcB/nostruct-align/1wdcB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20619/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.792847 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1wdcC id: 1wdcC alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wdcC/nostruct-align/1wdcC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wdcC/nostruct-align/1wdcC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1wdcC/nostruct-align/1wdcC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31271/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.082886 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1wdnA id: 1wdnA alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wdnA/nostruct-align/1wdnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wdnA/nostruct-align/1wdnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1wdnA/nostruct-align/1wdnA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32309/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.009888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1wer id: 1wer alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wer/nostruct-align/1wer.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wer/nostruct-align/1wer.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1wer/nostruct-align/1wer.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12121/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.297852 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1wfbA id: 1wfbA alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wfbA/nostruct-align/1wfbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wfbA/nostruct-align/1wfbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1wfbA/nostruct-align/1wfbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17452/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.086914 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1wgjA id: 1wgjA alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wgjA/nostruct-align/1wgjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wgjA/nostruct-align/1wgjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1wgjA/nostruct-align/1wgjA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9792/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.468872 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1wgtA_1 id: 1wgtA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1w/1wgtA_1/nostruct-align/1wgtA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1w/1wgtA_1/nostruct-align/1wgtA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1w/1wgtA_1/nostruct-align/1wgtA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12962/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.487793 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1wgtA_2 id: 1wgtA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1w/1wgtA_2/nostruct-align/1wgtA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1w/1wgtA_2/nostruct-align/1wgtA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1w/1wgtA_2/nostruct-align/1wgtA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21554/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.798828 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1wgtA_3 id: 1wgtA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1w/1wgtA_3/nostruct-align/1wgtA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1w/1wgtA_3/nostruct-align/1wgtA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1w/1wgtA_3/nostruct-align/1wgtA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24711/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.050903 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1wgtA_4 id: 1wgtA_4 alignment found: /projects/compbio4/experiments/models.97/domains/1w/1wgtA_4/nostruct-align/1wgtA_4.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1w/1wgtA_4/nostruct-align/1wgtA_4.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1w/1wgtA_4/nostruct-align/1wgtA_4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30998/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.996826 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1whi id: 1whi alignment found: /projects/compbio/experiments/models.97/pdb/1w/1whi/nostruct-align/1whi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1whi/nostruct-align/1whi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1whi/nostruct-align/1whi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2038/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.267822 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1who id: 1who alignment found: /projects/compbio/experiments/models.97/pdb/1w/1who/nostruct-align/1who.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1who/nostruct-align/1who.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1who/nostruct-align/1who.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18760/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.305908 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1whtA id: 1whtA alignment found: /projects/compbio/experiments/models.97/pdb/1w/1whtA/nostruct-align/1whtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1whtA/nostruct-align/1whtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1whtA/nostruct-align/1whtA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29956/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.627930 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1whtB id: 1whtB alignment found: /projects/compbio/experiments/models.97/pdb/1w/1whtB/nostruct-align/1whtB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1whtB/nostruct-align/1whtB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1whtB/nostruct-align/1whtB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6187/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.027954 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1wht_1a1 id: 1wht_1a1 alignment found: /projects/compbio4/experiments/models.97/domains/1w/1wht_1a1/nostruct-align/1wht_1a1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1w/1wht_1a1/nostruct-align/1wht_1a1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1w/1wht_1a1/nostruct-align/1wht_1a1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30521/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.309937 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1wit id: 1wit alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wit/nostruct-align/1wit.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wit/nostruct-align/1wit.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1wit/nostruct-align/1wit.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31207/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.175903 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1wjbA id: 1wjbA alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wjbA/nostruct-align/1wjbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wjbA/nostruct-align/1wjbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1wjbA/nostruct-align/1wjbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11408/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.284912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1wkt id: 1wkt alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wkt/nostruct-align/1wkt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wkt/nostruct-align/1wkt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1wkt/nostruct-align/1wkt.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13741/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.344971 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1wod id: 1wod alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wod/nostruct-align/1wod.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wod/nostruct-align/1wod.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1wod/nostruct-align/1wod.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2450/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.752930 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1wpoB id: 1wpoB alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wpoB/nostruct-align/1wpoB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wpoB/nostruct-align/1wpoB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1wpoB/nostruct-align/1wpoB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9423/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.304932 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1wwcA id: 1wwcA alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wwcA/nostruct-align/1wwcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wwcA/nostruct-align/1wwcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1w/1wwcA/nostruct-align/1wwcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25574/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.134888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1x11A id: 1x11A alignment found: /projects/compbio/experiments/models.97/pdb/1x/1x11A/nostruct-align/1x11A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1x11A/nostruct-align/1x11A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1x11A/nostruct-align/1x11A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12223/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.919922 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1xbd id: 1xbd alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xbd/nostruct-align/1xbd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xbd/nostruct-align/1xbd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xbd/nostruct-align/1xbd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12661/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.755981 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1xbrA id: 1xbrA alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xbrA/nostruct-align/1xbrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xbrA/nostruct-align/1xbrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xbrA/nostruct-align/1xbrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19435/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.591919 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1xdtR id: 1xdtR alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xdtR/nostruct-align/1xdtR.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xdtR/nostruct-align/1xdtR.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xdtR/nostruct-align/1xdtR.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16045/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.048950 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1xel id: 1xel alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xel/nostruct-align/1xel.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xel/nostruct-align/1xel.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xel/nostruct-align/1xel.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25686/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.019897 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1xer id: 1xer alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xer/nostruct-align/1xer.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xer/nostruct-align/1xer.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xer/nostruct-align/1xer.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2482/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.443970 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1xgsA id: 1xgsA alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xgsA/nostruct-align/1xgsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xgsA/nostruct-align/1xgsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xgsA/nostruct-align/1xgsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22045/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.906982 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1xikA id: 1xikA alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xikA/nostruct-align/1xikA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xikA/nostruct-align/1xikA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xikA/nostruct-align/1xikA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13618/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.195923 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1xjo id: 1xjo alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xjo/nostruct-align/1xjo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xjo/nostruct-align/1xjo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xjo/nostruct-align/1xjo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15686/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.343872 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1xnaA id: 1xnaA alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xnaA/nostruct-align/1xnaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xnaA/nostruct-align/1xnaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xnaA/nostruct-align/1xnaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25975/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.116943 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1xnb id: 1xnb alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xnb/nostruct-align/1xnb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xnb/nostruct-align/1xnb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xnb/nostruct-align/1xnb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19572/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.466797 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1xpa id: 1xpa alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xpa/nostruct-align/1xpa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xpa/nostruct-align/1xpa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xpa/nostruct-align/1xpa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-804/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.205933 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1xrb_1 id: 1xrb_1 alignment found: /projects/compbio4/experiments/models.97/domains/1x/1xrb_1/nostruct-align/1xrb_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1x/1xrb_1/nostruct-align/1xrb_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1x/1xrb_1/nostruct-align/1xrb_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19832/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.205933 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1xrb_2 id: 1xrb_2 alignment found: /projects/compbio4/experiments/models.97/domains/1x/1xrb_2/nostruct-align/1xrb_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1x/1xrb_2/nostruct-align/1xrb_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1x/1xrb_2/nostruct-align/1xrb_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30282/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.806885 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1xrb_3 id: 1xrb_3 alignment found: /projects/compbio4/experiments/models.97/domains/1x/1xrb_3/nostruct-align/1xrb_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1x/1xrb_3/nostruct-align/1xrb_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1x/1xrb_3/nostruct-align/1xrb_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18098/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.589966 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1xsm id: 1xsm alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xsm/nostruct-align/1xsm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xsm/nostruct-align/1xsm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xsm/nostruct-align/1xsm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19873/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.574951 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1xsoA id: 1xsoA alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xsoA/nostruct-align/1xsoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xsoA/nostruct-align/1xsoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xsoA/nostruct-align/1xsoA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3534/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.998901 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1xtcC id: 1xtcC alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xtcC/nostruct-align/1xtcC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xtcC/nostruct-align/1xtcC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xtcC/nostruct-align/1xtcC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17455/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.606934 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1xvaA id: 1xvaA alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xvaA/nostruct-align/1xvaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xvaA/nostruct-align/1xvaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xvaA/nostruct-align/1xvaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26739/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.497925 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1xwl id: 1xwl alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xwl/nostruct-align/1xwl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xwl/nostruct-align/1xwl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xwl/nostruct-align/1xwl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13314/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.312866 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1xxaA id: 1xxaA alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xxaA/nostruct-align/1xxaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xxaA/nostruct-align/1xxaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xxaA/nostruct-align/1xxaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24721/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.669922 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1xxcA id: 1xxcA alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xxcA/nostruct-align/1xxcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xxcA/nostruct-align/1xxcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xxcA/nostruct-align/1xxcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5156/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.706909 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1xyn id: 1xyn alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xyn/nostruct-align/1xyn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xyn/nostruct-align/1xyn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xyn/nostruct-align/1xyn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-673/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.273926 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1xypA id: 1xypA alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xypA/nostruct-align/1xypA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xypA/nostruct-align/1xypA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xypA/nostruct-align/1xypA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19843/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.322876 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1xyzA id: 1xyzA alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xyzA/nostruct-align/1xyzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xyzA/nostruct-align/1xyzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1x/1xyzA/nostruct-align/1xyzA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26847/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.409912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1yacA id: 1yacA alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yacA/nostruct-align/1yacA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yacA/nostruct-align/1yacA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yacA/nostruct-align/1yacA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12793/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.532837 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1yagA id: 1yagA alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yagA/nostruct-align/1yagA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yagA/nostruct-align/1yagA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yagA/nostruct-align/1yagA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16006/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.360962 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1yagG id: 1yagG alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yagG/nostruct-align/1yagG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yagG/nostruct-align/1yagG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yagG/nostruct-align/1yagG.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16166/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.315918 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1yaiA id: 1yaiA alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yaiA/nostruct-align/1yaiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yaiA/nostruct-align/1yaiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yaiA/nostruct-align/1yaiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5360/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.966797 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1yasA id: 1yasA alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yasA/nostruct-align/1yasA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yasA/nostruct-align/1yasA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yasA/nostruct-align/1yasA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30880/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.140869 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ybvA id: 1ybvA alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ybvA/nostruct-align/1ybvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ybvA/nostruct-align/1ybvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1ybvA/nostruct-align/1ybvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18986/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.960815 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ycc id: 1ycc alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ycc/nostruct-align/1ycc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ycc/nostruct-align/1ycc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1ycc/nostruct-align/1ycc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9244/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.304810 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ycqA id: 1ycqA alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ycqA/nostruct-align/1ycqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ycqA/nostruct-align/1ycqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1ycqA/nostruct-align/1ycqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18652/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.708862 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ycsB id: 1ycsB alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ycsB/nostruct-align/1ycsB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ycsB/nostruct-align/1ycsB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1ycsB/nostruct-align/1ycsB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25709/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.615845 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1yer id: 1yer alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yer/nostruct-align/1yer.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yer/nostruct-align/1yer.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yer/nostruct-align/1yer.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13087/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.411865 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1yge id: 1yge alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yge/nostruct-align/1yge.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yge/nostruct-align/1yge.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yge/nostruct-align/1yge.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12524/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.412964 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1yghA id: 1yghA alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yghA/nostruct-align/1yghA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yghA/nostruct-align/1yghA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yghA/nostruct-align/1yghA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6769/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.261963 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ygs id: 1ygs alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ygs/nostruct-align/1ygs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ygs/nostruct-align/1ygs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1ygs/nostruct-align/1ygs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29788/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.448975 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1yna id: 1yna alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yna/nostruct-align/1yna.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yna/nostruct-align/1yna.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yna/nostruct-align/1yna.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14707/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.391846 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1yptA id: 1yptA alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yptA/nostruct-align/1yptA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yptA/nostruct-align/1yptA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yptA/nostruct-align/1yptA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15781/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.968872 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1yrgA id: 1yrgA alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yrgA/nostruct-align/1yrgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yrgA/nostruct-align/1yrgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yrgA/nostruct-align/1yrgA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31990/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.043823 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1yrgB id: 1yrgB alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yrgB/nostruct-align/1yrgB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yrgB/nostruct-align/1yrgB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yrgB/nostruct-align/1yrgB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25261/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.762817 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1yrnA id: 1yrnA alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yrnA/nostruct-align/1yrnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yrnA/nostruct-align/1yrnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yrnA/nostruct-align/1yrnA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14140/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.365967 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1yrnB id: 1yrnB alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yrnB/nostruct-align/1yrnB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yrnB/nostruct-align/1yrnB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yrnB/nostruct-align/1yrnB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30760/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.602905 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ysc id: 1ysc alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ysc/nostruct-align/1ysc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ysc/nostruct-align/1ysc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1ysc/nostruct-align/1ysc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28504/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.987915 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ystH id: 1ystH alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ystH/nostruct-align/1ystH.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ystH/nostruct-align/1ystH.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1ystH/nostruct-align/1ystH.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9937/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.106934 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ytbA id: 1ytbA alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ytbA/nostruct-align/1ytbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ytbA/nostruct-align/1ytbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1ytbA/nostruct-align/1ytbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31885/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.085815 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ytbA_1 id: 1ytbA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1y/1ytbA_1/nostruct-align/1ytbA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1y/1ytbA_1/nostruct-align/1ytbA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1y/1ytbA_1/nostruct-align/1ytbA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2988/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.807861 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ytbA_2 id: 1ytbA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1y/1ytbA_2/nostruct-align/1ytbA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1y/1ytbA_2/nostruct-align/1ytbA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1y/1ytbA_2/nostruct-align/1ytbA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29111/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.246826 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ytfB id: 1ytfB alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ytfB/nostruct-align/1ytfB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ytfB/nostruct-align/1ytfB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1ytfB/nostruct-align/1ytfB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28930/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.640869 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ytfC id: 1ytfC alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ytfC/nostruct-align/1ytfC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ytfC/nostruct-align/1ytfC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1ytfC/nostruct-align/1ytfC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-629/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.019897 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ytfD id: 1ytfD alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ytfD/nostruct-align/1ytfD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ytfD/nostruct-align/1ytfD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1ytfD/nostruct-align/1ytfD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31696/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.196899 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1ytw id: 1ytw alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ytw/nostruct-align/1ytw.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ytw/nostruct-align/1ytw.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1ytw/nostruct-align/1ytw.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26194/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.939941 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1yua id: 1yua alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yua/nostruct-align/1yua.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yua/nostruct-align/1yua.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yua/nostruct-align/1yua.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27231/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.243896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1yua_1 id: 1yua_1 alignment found: /projects/compbio4/experiments/models.97/domains/1y/1yua_1/nostruct-align/1yua_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1y/1yua_1/nostruct-align/1yua_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1y/1yua_1/nostruct-align/1yua_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-548/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.004883 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1yua_2 id: 1yua_2 alignment found: /projects/compbio4/experiments/models.97/domains/1y/1yua_2/nostruct-align/1yua_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1y/1yua_2/nostruct-align/1yua_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1y/1yua_2/nostruct-align/1yua_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22366/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.708862 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1yuiA id: 1yuiA alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yuiA/nostruct-align/1yuiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yuiA/nostruct-align/1yuiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yuiA/nostruct-align/1yuiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31818/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.131836 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1yveI id: 1yveI alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yveI/nostruct-align/1yveI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yveI/nostruct-align/1yveI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yveI/nostruct-align/1yveI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6366/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.136963 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1yveJ id: 1yveJ alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yveJ/nostruct-align/1yveJ.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yveJ/nostruct-align/1yveJ.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1y/1yveJ/nostruct-align/1yveJ.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19543/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.732910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1zaaC id: 1zaaC alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zaaC/nostruct-align/1zaaC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zaaC/nostruct-align/1zaaC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1zaaC/nostruct-align/1zaaC.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6832/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -24.980835 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1zac id: 1zac alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zac/nostruct-align/1zac.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zac/nostruct-align/1zac.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1zac/nostruct-align/1zac.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3725/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.150879 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1zaq id: 1zaq alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zaq/nostruct-align/1zaq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zaq/nostruct-align/1zaq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1zaq/nostruct-align/1zaq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8780/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.673828 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1zbdB id: 1zbdB alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zbdB/nostruct-align/1zbdB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zbdB/nostruct-align/1zbdB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1zbdB/nostruct-align/1zbdB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26749/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.950928 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1zeiA id: 1zeiA alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zeiA/nostruct-align/1zeiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zeiA/nostruct-align/1zeiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1zeiA/nostruct-align/1zeiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19054/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.984863 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1zfd id: 1zfd alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zfd/nostruct-align/1zfd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zfd/nostruct-align/1zfd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1zfd/nostruct-align/1zfd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2320/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.684937 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1zfpE id: 1zfpE alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zfpE/nostruct-align/1zfpE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zfpE/nostruct-align/1zfpE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1zfpE/nostruct-align/1zfpE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13302/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.024902 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1zid id: 1zid alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zid/nostruct-align/1zid.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zid/nostruct-align/1zid.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1zid/nostruct-align/1zid.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3954/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.196899 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1zin id: 1zin alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zin/nostruct-align/1zin.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zin/nostruct-align/1zin.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1zin/nostruct-align/1zin.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31675/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.867920 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1zmeC id: 1zmeC alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zmeC/nostruct-align/1zmeC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zmeC/nostruct-align/1zmeC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1zmeC/nostruct-align/1zmeC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28753/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -19.062988 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1znf id: 1znf alignment found: /projects/compbio/experiments/models.97/pdb/1z/1znf/nostruct-align/1znf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1znf/nostruct-align/1znf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1znf/nostruct-align/1znf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30498/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.513794 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1zpdA id: 1zpdA alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zpdA/nostruct-align/1zpdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zpdA/nostruct-align/1zpdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1zpdA/nostruct-align/1zpdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6339/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.305908 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1zrn id: 1zrn alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zrn/nostruct-align/1zrn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zrn/nostruct-align/1zrn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1zrn/nostruct-align/1zrn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15751/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.548828 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1zto id: 1zto alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zto/nostruct-align/1zto.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zto/nostruct-align/1zto.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1zto/nostruct-align/1zto.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28882/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.449829 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1zug id: 1zug alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zug/nostruct-align/1zug.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zug/nostruct-align/1zug.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1zug/nostruct-align/1zug.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3825/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.260986 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1zwa id: 1zwa alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zwa/nostruct-align/1zwa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zwa/nostruct-align/1zwa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1zwa/nostruct-align/1zwa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11981/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.440918 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1zxq id: 1zxq alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zxq/nostruct-align/1zxq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zxq/nostruct-align/1zxq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1zxq/nostruct-align/1zxq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14413/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.957886 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 1zymA id: 1zymA alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zymA/nostruct-align/1zymA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zymA/nostruct-align/1zymA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1z/1zymA/nostruct-align/1zymA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15551/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.750977 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 256bA id: 256bA alignment found: /projects/compbio/experiments/models.97/pdb/25/256bA/nostruct-align/256bA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/25/256bA/nostruct-align/256bA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/25/256bA/nostruct-align/256bA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3614/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.568848 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2a0b id: 2a0b alignment found: /projects/compbio/experiments/models.97/pdb/2a/2a0b/nostruct-align/2a0b.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2a0b/nostruct-align/2a0b.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2a0b/nostruct-align/2a0b.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30078/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.883911 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2a3dA id: 2a3dA alignment found: /projects/compbio/experiments/models.97/pdb/2a/2a3dA/nostruct-align/2a3dA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2a3dA/nostruct-align/2a3dA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2a3dA/nostruct-align/2a3dA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16968/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.435913 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2aaa id: 2aaa alignment found: /projects/compbio/experiments/models.97/pdb/2a/2aaa/nostruct-align/2aaa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2aaa/nostruct-align/2aaa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2aaa/nostruct-align/2aaa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16081/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.631836 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2aaa_1 id: 2aaa_1 alignment found: /projects/compbio4/experiments/models.97/domains/2a/2aaa_1/nostruct-align/2aaa_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2a/2aaa_1/nostruct-align/2aaa_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2a/2aaa_1/nostruct-align/2aaa_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13259/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.322998 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2aaa_2 id: 2aaa_2 alignment found: /projects/compbio4/experiments/models.97/domains/2a/2aaa_2/nostruct-align/2aaa_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2a/2aaa_2/nostruct-align/2aaa_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2a/2aaa_2/nostruct-align/2aaa_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15458/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.032837 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2abd id: 2abd alignment found: /projects/compbio/experiments/models.97/pdb/2a/2abd/nostruct-align/2abd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2abd/nostruct-align/2abd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2abd/nostruct-align/2abd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17666/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.243896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2abk id: 2abk alignment found: /projects/compbio/experiments/models.97/pdb/2a/2abk/nostruct-align/2abk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2abk/nostruct-align/2abk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2abk/nostruct-align/2abk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17377/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.909912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ach_1a1 id: 2ach_1a1 alignment found: /projects/compbio4/experiments/models.97/domains/2a/2ach_1a1/nostruct-align/2ach_1a1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2a/2ach_1a1/nostruct-align/2ach_1a1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2a/2ach_1a1/nostruct-align/2ach_1a1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22576/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.862915 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2acr id: 2acr alignment found: /projects/compbio/experiments/models.97/pdb/2a/2acr/nostruct-align/2acr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2acr/nostruct-align/2acr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2acr/nostruct-align/2acr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19754/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.495850 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2act id: 2act alignment found: /projects/compbio/experiments/models.97/pdb/2a/2act/nostruct-align/2act.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2act/nostruct-align/2act.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2act/nostruct-align/2act.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17274/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.929932 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2acy id: 2acy alignment found: /projects/compbio/experiments/models.97/pdb/2a/2acy/nostruct-align/2acy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2acy/nostruct-align/2acy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2acy/nostruct-align/2acy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16215/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.131836 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2admA id: 2admA alignment found: /projects/compbio/experiments/models.97/pdb/2a/2admA/nostruct-align/2admA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2admA/nostruct-align/2admA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2admA/nostruct-align/2admA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-31410/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.326904 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2adr id: 2adr alignment found: /projects/compbio/experiments/models.97/pdb/2a/2adr/nostruct-align/2adr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2adr/nostruct-align/2adr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2adr/nostruct-align/2adr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9730/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -19.491821 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2adx id: 2adx alignment found: /projects/compbio/experiments/models.97/pdb/2a/2adx/nostruct-align/2adx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2adx/nostruct-align/2adx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2adx/nostruct-align/2adx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17494/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.249878 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ae2A id: 2ae2A alignment found: /projects/compbio/experiments/models.97/pdb/2a/2ae2A/nostruct-align/2ae2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2ae2A/nostruct-align/2ae2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2ae2A/nostruct-align/2ae2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19797/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.617920 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2af8 id: 2af8 alignment found: /projects/compbio/experiments/models.97/pdb/2a/2af8/nostruct-align/2af8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2af8/nostruct-align/2af8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2af8/nostruct-align/2af8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18285/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.387939 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2afp id: 2afp alignment found: /projects/compbio/experiments/models.97/pdb/2a/2afp/nostruct-align/2afp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2afp/nostruct-align/2afp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2afp/nostruct-align/2afp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15487/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.072876 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2afpA id: 2afpA alignment found: /projects/compbio/experiments/models.97/pdb/2a/2afpA/nostruct-align/2afpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2afpA/nostruct-align/2afpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2afpA/nostruct-align/2afpA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6651/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.893799 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ahjA id: 2ahjA alignment found: /projects/compbio/experiments/models.97/pdb/2a/2ahjA/nostruct-align/2ahjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2ahjA/nostruct-align/2ahjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2ahjA/nostruct-align/2ahjA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32633/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.493896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ahjB id: 2ahjB alignment found: /projects/compbio/experiments/models.97/pdb/2a/2ahjB/nostruct-align/2ahjB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2ahjB/nostruct-align/2ahjB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2ahjB/nostruct-align/2ahjB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27999/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.056885 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ahjC id: 2ahjC alignment found: /projects/compbio/experiments/models.97/pdb/2a/2ahjC/nostruct-align/2ahjC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2ahjC/nostruct-align/2ahjC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2ahjC/nostruct-align/2ahjC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4345/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.520874 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ak3A id: 2ak3A alignment found: /projects/compbio/experiments/models.97/pdb/2a/2ak3A/nostruct-align/2ak3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2ak3A/nostruct-align/2ak3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2ak3A/nostruct-align/2ak3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20195/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.806885 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2alcA id: 2alcA alignment found: /projects/compbio/experiments/models.97/pdb/2a/2alcA/nostruct-align/2alcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2alcA/nostruct-align/2alcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2alcA/nostruct-align/2alcA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17072/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.152954 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2alp id: 2alp alignment found: /projects/compbio/experiments/models.97/pdb/2a/2alp/nostruct-align/2alp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2alp/nostruct-align/2alp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2alp/nostruct-align/2alp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19629/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.076904 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2anhA id: 2anhA alignment found: /projects/compbio/experiments/models.97/pdb/2a/2anhA/nostruct-align/2anhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2anhA/nostruct-align/2anhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2anhA/nostruct-align/2anhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32191/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.069824 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2aop id: 2aop alignment found: /projects/compbio/experiments/models.97/pdb/2a/2aop/nostruct-align/2aop.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2aop/nostruct-align/2aop.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2aop/nostruct-align/2aop.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6395/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.234863 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2apr id: 2apr alignment found: /projects/compbio/experiments/models.97/pdb/2a/2apr/nostruct-align/2apr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2apr/nostruct-align/2apr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2apr/nostruct-align/2apr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16896/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.423828 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2arcA id: 2arcA alignment found: /projects/compbio/experiments/models.97/pdb/2a/2arcA/nostruct-align/2arcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2arcA/nostruct-align/2arcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2arcA/nostruct-align/2arcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7879/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.510864 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2arcB id: 2arcB alignment found: /projects/compbio/experiments/models.97/pdb/2a/2arcB/nostruct-align/2arcB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2arcB/nostruct-align/2arcB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2arcB/nostruct-align/2arcB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8157/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.452881 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2at2A id: 2at2A alignment found: /projects/compbio/experiments/models.97/pdb/2a/2at2A/nostruct-align/2at2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2at2A/nostruct-align/2at2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2at2A/nostruct-align/2at2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13513/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.903809 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2atjA id: 2atjA alignment found: /projects/compbio/experiments/models.97/pdb/2a/2atjA/nostruct-align/2atjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2atjA/nostruct-align/2atjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2atjA/nostruct-align/2atjA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20037/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.916992 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2aviA id: 2aviA alignment found: /projects/compbio/experiments/models.97/pdb/2a/2aviA/nostruct-align/2aviA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2aviA/nostruct-align/2aviA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2aviA/nostruct-align/2aviA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28716/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.591919 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ayh id: 2ayh alignment found: /projects/compbio/experiments/models.97/pdb/2a/2ayh/nostruct-align/2ayh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2ayh/nostruct-align/2ayh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2ayh/nostruct-align/2ayh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21404/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.124878 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2azaA id: 2azaA alignment found: /projects/compbio/experiments/models.97/pdb/2a/2azaA/nostruct-align/2azaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2azaA/nostruct-align/2azaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2a/2azaA/nostruct-align/2azaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3577/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.379883 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2baa id: 2baa alignment found: /projects/compbio/experiments/models.97/pdb/2b/2baa/nostruct-align/2baa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2baa/nostruct-align/2baa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2baa/nostruct-align/2baa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27406/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.269897 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2bb2 id: 2bb2 alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bb2/nostruct-align/2bb2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bb2/nostruct-align/2bb2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bb2/nostruct-align/2bb2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28195/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.208862 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2bb2_1 id: 2bb2_1 alignment found: /projects/compbio4/experiments/models.97/domains/2b/2bb2_1/nostruct-align/2bb2_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2b/2bb2_1/nostruct-align/2bb2_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2b/2bb2_1/nostruct-align/2bb2_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5038/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.390869 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2bb2_2 id: 2bb2_2 alignment found: /projects/compbio4/experiments/models.97/domains/2b/2bb2_2/nostruct-align/2bb2_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2b/2bb2_2/nostruct-align/2bb2_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2b/2bb2_2/nostruct-align/2bb2_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24665/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.204834 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2bb8 id: 2bb8 alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bb8/nostruct-align/2bb8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bb8/nostruct-align/2bb8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bb8/nostruct-align/2bb8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4273/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.483887 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2bbkH id: 2bbkH alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bbkH/nostruct-align/2bbkH.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bbkH/nostruct-align/2bbkH.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bbkH/nostruct-align/2bbkH.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6719/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.470947 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2bbkL id: 2bbkL alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bbkL/nostruct-align/2bbkL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bbkL/nostruct-align/2bbkL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bbkL/nostruct-align/2bbkL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14904/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.768921 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2bbvA id: 2bbvA alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bbvA/nostruct-align/2bbvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bbvA/nostruct-align/2bbvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bbvA/nostruct-align/2bbvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27956/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.169800 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2bbvC id: 2bbvC alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bbvC/nostruct-align/2bbvC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bbvC/nostruct-align/2bbvC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bbvC/nostruct-align/2bbvC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12390/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.188843 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2bby id: 2bby alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bby/nostruct-align/2bby.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bby/nostruct-align/2bby.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bby/nostruct-align/2bby.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8412/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.534912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2bc2A id: 2bc2A alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bc2A/nostruct-align/2bc2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bc2A/nostruct-align/2bc2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bc2A/nostruct-align/2bc2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10927/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.301880 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2bc2B id: 2bc2B alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bc2B/nostruct-align/2bc2B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bc2B/nostruct-align/2bc2B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bc2B/nostruct-align/2bc2B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3497/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.240845 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2bce id: 2bce alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bce/nostruct-align/2bce.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bce/nostruct-align/2bce.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bce/nostruct-align/2bce.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8715/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.112915 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2bds id: 2bds alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bds/nostruct-align/2bds.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bds/nostruct-align/2bds.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bds/nostruct-align/2bds.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17384/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.406982 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2bgu id: 2bgu alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bgu/nostruct-align/2bgu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bgu/nostruct-align/2bgu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bgu/nostruct-align/2bgu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4365/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.808960 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2bi6H id: 2bi6H alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bi6H/nostruct-align/2bi6H.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bi6H/nostruct-align/2bi6H.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bi6H/nostruct-align/2bi6H.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5953/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.607910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2bidA id: 2bidA alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bidA/nostruct-align/2bidA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bidA/nostruct-align/2bidA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bidA/nostruct-align/2bidA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2749/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.744873 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2bjxA id: 2bjxA alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bjxA/nostruct-align/2bjxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bjxA/nostruct-align/2bjxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bjxA/nostruct-align/2bjxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18999/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.579834 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2bltA id: 2bltA alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bltA/nostruct-align/2bltA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bltA/nostruct-align/2bltA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bltA/nostruct-align/2bltA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27170/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.498901 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2bmhA id: 2bmhA alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bmhA/nostruct-align/2bmhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bmhA/nostruct-align/2bmhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bmhA/nostruct-align/2bmhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22470/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.010010 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2bn2A id: 2bn2A alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bn2A/nostruct-align/2bn2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bn2A/nostruct-align/2bn2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bn2A/nostruct-align/2bn2A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-31191/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.214844 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2bnh id: 2bnh alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bnh/nostruct-align/2bnh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bnh/nostruct-align/2bnh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bnh/nostruct-align/2bnh.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22945/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.280884 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2bopA id: 2bopA alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bopA/nostruct-align/2bopA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bopA/nostruct-align/2bopA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bopA/nostruct-align/2bopA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22079/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.613892 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2bosA id: 2bosA alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bosA/nostruct-align/2bosA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bosA/nostruct-align/2bosA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bosA/nostruct-align/2bosA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17435/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.968994 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2bpa1 id: 2bpa1 alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bpa1/nostruct-align/2bpa1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bpa1/nostruct-align/2bpa1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bpa1/nostruct-align/2bpa1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21937/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.569824 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2bpa2 id: 2bpa2 alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bpa2/nostruct-align/2bpa2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bpa2/nostruct-align/2bpa2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bpa2/nostruct-align/2bpa2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27070/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.231934 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2bpa3 id: 2bpa3 alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bpa3/nostruct-align/2bpa3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bpa3/nostruct-align/2bpa3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bpa3/nostruct-align/2bpa3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17286/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.680908 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2brz id: 2brz alignment found: /projects/compbio/experiments/models.97/pdb/2b/2brz/nostruct-align/2brz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2brz/nostruct-align/2brz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2brz/nostruct-align/2brz.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22125/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.739868 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2btcI id: 2btcI alignment found: /projects/compbio/experiments/models.97/pdb/2b/2btcI/nostruct-align/2btcI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2btcI/nostruct-align/2btcI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2btcI/nostruct-align/2btcI.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11105/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.678833 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2btfA id: 2btfA alignment found: /projects/compbio/experiments/models.97/pdb/2b/2btfA/nostruct-align/2btfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2btfA/nostruct-align/2btfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2btfA/nostruct-align/2btfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29181/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.555908 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2btfA_1 id: 2btfA_1 alignment found: /projects/compbio4/experiments/models.97/domains/2b/2btfA_1/nostruct-align/2btfA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2b/2btfA_1/nostruct-align/2btfA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2b/2btfA_1/nostruct-align/2btfA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24154/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.605957 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2btfA_2 id: 2btfA_2 alignment found: /projects/compbio4/experiments/models.97/domains/2b/2btfA_2/nostruct-align/2btfA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2b/2btfA_2/nostruct-align/2btfA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2b/2btfA_2/nostruct-align/2btfA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1796/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.600830 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2btvA id: 2btvA alignment found: /projects/compbio/experiments/models.97/pdb/2b/2btvA/nostruct-align/2btvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2btvA/nostruct-align/2btvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2btvA/nostruct-align/2btvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17710/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.394897 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2bvwA id: 2bvwA alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bvwA/nostruct-align/2bvwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bvwA/nostruct-align/2bvwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2b/2bvwA/nostruct-align/2bvwA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31917/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.361938 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2cae id: 2cae alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cae/nostruct-align/2cae.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cae/nostruct-align/2cae.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cae/nostruct-align/2cae.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15375/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.350830 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2cas id: 2cas alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cas/nostruct-align/2cas.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cas/nostruct-align/2cas.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cas/nostruct-align/2cas.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22743/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.501831 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2cau id: 2cau alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cau/nostruct-align/2cau.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cau/nostruct-align/2cau.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cau/nostruct-align/2cau.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1533/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.926880 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2cb5A id: 2cb5A alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cb5A/nostruct-align/2cb5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cb5A/nostruct-align/2cb5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cb5A/nostruct-align/2cb5A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12676/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.682007 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2cba id: 2cba alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cba/nostruct-align/2cba.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cba/nostruct-align/2cba.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cba/nostruct-align/2cba.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4252/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.158813 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2cbh id: 2cbh alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cbh/nostruct-align/2cbh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cbh/nostruct-align/2cbh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cbh/nostruct-align/2cbh.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26513/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.939941 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2cblA id: 2cblA alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cblA/nostruct-align/2cblA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cblA/nostruct-align/2cblA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cblA/nostruct-align/2cblA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2008/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.416870 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2cbp id: 2cbp alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cbp/nostruct-align/2cbp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cbp/nostruct-align/2cbp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cbp/nostruct-align/2cbp.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13215/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.082886 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ccyA id: 2ccyA alignment found: /projects/compbio/experiments/models.97/pdb/2c/2ccyA/nostruct-align/2ccyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2ccyA/nostruct-align/2ccyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2ccyA/nostruct-align/2ccyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16225/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.903809 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2cdx id: 2cdx alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cdx/nostruct-align/2cdx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cdx/nostruct-align/2cdx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cdx/nostruct-align/2cdx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28693/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.583008 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2cgpA id: 2cgpA alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cgpA/nostruct-align/2cgpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cgpA/nostruct-align/2cgpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cgpA/nostruct-align/2cgpA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24060/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.641846 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2chr_1 id: 2chr_1 alignment found: /projects/compbio4/experiments/models.97/domains/2c/2chr_1/nostruct-align/2chr_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2c/2chr_1/nostruct-align/2chr_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2c/2chr_1/nostruct-align/2chr_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28136/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -87.847900 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2chr_2 id: 2chr_2 alignment found: /projects/compbio4/experiments/models.97/domains/2c/2chr_2/nostruct-align/2chr_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2c/2chr_2/nostruct-align/2chr_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2c/2chr_2/nostruct-align/2chr_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24022/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -26.454956 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2chsA id: 2chsA alignment found: /projects/compbio/experiments/models.97/pdb/2c/2chsA/nostruct-align/2chsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2chsA/nostruct-align/2chsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2chsA/nostruct-align/2chsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30559/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.188843 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2cmd id: 2cmd alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cmd/nostruct-align/2cmd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cmd/nostruct-align/2cmd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cmd/nostruct-align/2cmd.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27004/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.541870 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2cmd_1 id: 2cmd_1 alignment found: /projects/compbio4/experiments/models.97/domains/2c/2cmd_1/nostruct-align/2cmd_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2c/2cmd_1/nostruct-align/2cmd_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2c/2cmd_1/nostruct-align/2cmd_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32363/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.339966 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2cmd_2 id: 2cmd_2 alignment found: /projects/compbio4/experiments/models.97/domains/2c/2cmd_2/nostruct-align/2cmd_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2c/2cmd_2/nostruct-align/2cmd_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2c/2cmd_2/nostruct-align/2cmd_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4475/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.835938 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2cnd_1 id: 2cnd_1 alignment found: /projects/compbio4/experiments/models.97/domains/2c/2cnd_1/nostruct-align/2cnd_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2c/2cnd_1/nostruct-align/2cnd_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2c/2cnd_1/nostruct-align/2cnd_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17745/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.207886 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2cnd_2 id: 2cnd_2 alignment found: /projects/compbio4/experiments/models.97/domains/2c/2cnd_2/nostruct-align/2cnd_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2c/2cnd_2/nostruct-align/2cnd_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2c/2cnd_2/nostruct-align/2cnd_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19169/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.558960 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2cpb id: 2cpb alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cpb/nostruct-align/2cpb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cpb/nostruct-align/2cpb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cpb/nostruct-align/2cpb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28476/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.879883 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2cpgA id: 2cpgA alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cpgA/nostruct-align/2cpgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cpgA/nostruct-align/2cpgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cpgA/nostruct-align/2cpgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28209/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.663940 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2cpl id: 2cpl alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cpl/nostruct-align/2cpl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cpl/nostruct-align/2cpl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cpl/nostruct-align/2cpl.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6080/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.018921 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2cps id: 2cps alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cps/nostruct-align/2cps.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cps/nostruct-align/2cps.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cps/nostruct-align/2cps.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4013/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.879883 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2crd id: 2crd alignment found: /projects/compbio/experiments/models.97/pdb/2c/2crd/nostruct-align/2crd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2crd/nostruct-align/2crd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2crd/nostruct-align/2crd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8422/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.861938 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ctb id: 2ctb alignment found: /projects/compbio/experiments/models.97/pdb/2c/2ctb/nostruct-align/2ctb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2ctb/nostruct-align/2ctb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2ctb/nostruct-align/2ctb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21255/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.192871 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ctc id: 2ctc alignment found: /projects/compbio/experiments/models.97/pdb/2c/2ctc/nostruct-align/2ctc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2ctc/nostruct-align/2ctc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2ctc/nostruct-align/2ctc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12521/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.192871 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2cthA id: 2cthA alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cthA/nostruct-align/2cthA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cthA/nostruct-align/2cthA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cthA/nostruct-align/2cthA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20372/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.143921 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2cuaA id: 2cuaA alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cuaA/nostruct-align/2cuaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cuaA/nostruct-align/2cuaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cuaA/nostruct-align/2cuaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25018/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.214966 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2cxbA id: 2cxbA alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cxbA/nostruct-align/2cxbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cxbA/nostruct-align/2cxbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cxbA/nostruct-align/2cxbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18769/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.505981 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2cy3 id: 2cy3 alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cy3/nostruct-align/2cy3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cy3/nostruct-align/2cy3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cy3/nostruct-align/2cy3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5803/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.765991 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2cyp id: 2cyp alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cyp/nostruct-align/2cyp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cyp/nostruct-align/2cyp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2c/2cyp/nostruct-align/2cyp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21228/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.776978 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2dgcA id: 2dgcA alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dgcA/nostruct-align/2dgcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dgcA/nostruct-align/2dgcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2d/2dgcA/nostruct-align/2dgcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30252/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.743896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2dhqA id: 2dhqA alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dhqA/nostruct-align/2dhqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dhqA/nostruct-align/2dhqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2d/2dhqA/nostruct-align/2dhqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10416/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.570923 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2dkb id: 2dkb alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dkb/nostruct-align/2dkb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dkb/nostruct-align/2dkb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2d/2dkb/nostruct-align/2dkb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1834/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.611938 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2dldA_1 id: 2dldA_1 alignment found: /projects/compbio4/experiments/models.97/domains/2d/2dldA_1/nostruct-align/2dldA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2d/2dldA_1/nostruct-align/2dldA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2d/2dldA_1/nostruct-align/2dldA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10921/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.817993 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2dldA_2 id: 2dldA_2 alignment found: /projects/compbio4/experiments/models.97/domains/2d/2dldA_2/nostruct-align/2dldA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2d/2dldA_2/nostruct-align/2dldA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2d/2dldA_2/nostruct-align/2dldA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10623/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.675903 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2dln id: 2dln alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dln/nostruct-align/2dln.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dln/nostruct-align/2dln.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2d/2dln/nostruct-align/2dln.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5749/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.556885 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2dln_1 id: 2dln_1 alignment found: /projects/compbio4/experiments/models.97/domains/2d/2dln_1/nostruct-align/2dln_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2d/2dln_1/nostruct-align/2dln_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2d/2dln_1/nostruct-align/2dln_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6756/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.727905 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2dln_2 id: 2dln_2 alignment found: /projects/compbio4/experiments/models.97/domains/2d/2dln_2/nostruct-align/2dln_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2d/2dln_2/nostruct-align/2dln_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2d/2dln_2/nostruct-align/2dln_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21329/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.860840 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2dnjA id: 2dnjA alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dnjA/nostruct-align/2dnjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dnjA/nostruct-align/2dnjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2d/2dnjA/nostruct-align/2dnjA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10574/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.505981 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2dorA id: 2dorA alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dorA/nostruct-align/2dorA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dorA/nostruct-align/2dorA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2d/2dorA/nostruct-align/2dorA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-948/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.276001 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2dpg id: 2dpg alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dpg/nostruct-align/2dpg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dpg/nostruct-align/2dpg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2d/2dpg/nostruct-align/2dpg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20914/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.550903 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2dpmA id: 2dpmA alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dpmA/nostruct-align/2dpmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dpmA/nostruct-align/2dpmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2d/2dpmA/nostruct-align/2dpmA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28610/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.829834 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2dri id: 2dri alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dri/nostruct-align/2dri.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dri/nostruct-align/2dri.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2d/2dri/nostruct-align/2dri.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24100/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.895874 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2drpA id: 2drpA alignment found: /projects/compbio/experiments/models.97/pdb/2d/2drpA/nostruct-align/2drpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2drpA/nostruct-align/2drpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2d/2drpA/nostruct-align/2drpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28066/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -20.386963 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2drpA_1 id: 2drpA_1 alignment found: /projects/compbio4/experiments/models.97/domains/2d/2drpA_1/nostruct-align/2drpA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2d/2drpA_1/nostruct-align/2drpA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2d/2drpA_1/nostruct-align/2drpA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29298/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.245972 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2drpA_2 id: 2drpA_2 alignment found: /projects/compbio4/experiments/models.97/domains/2d/2drpA_2/nostruct-align/2drpA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2d/2drpA_2/nostruct-align/2drpA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2d/2drpA_2/nostruct-align/2drpA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23399/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.753906 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2dtr id: 2dtr alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dtr/nostruct-align/2dtr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dtr/nostruct-align/2dtr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2d/2dtr/nostruct-align/2dtr.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1793/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.140869 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2dubE id: 2dubE alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dubE/nostruct-align/2dubE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dubE/nostruct-align/2dubE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2d/2dubE/nostruct-align/2dubE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9311/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.043823 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2dynA id: 2dynA alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dynA/nostruct-align/2dynA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dynA/nostruct-align/2dynA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2d/2dynA/nostruct-align/2dynA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1912/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.944946 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ebn id: 2ebn alignment found: /projects/compbio/experiments/models.97/pdb/2e/2ebn/nostruct-align/2ebn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2ebn/nostruct-align/2ebn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2e/2ebn/nostruct-align/2ebn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7698/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.653809 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2eboA id: 2eboA alignment found: /projects/compbio/experiments/models.97/pdb/2e/2eboA/nostruct-align/2eboA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2eboA/nostruct-align/2eboA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2e/2eboA/nostruct-align/2eboA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7475/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.476929 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ech id: 2ech alignment found: /projects/compbio/experiments/models.97/pdb/2e/2ech/nostruct-align/2ech.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2ech/nostruct-align/2ech.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2e/2ech/nostruct-align/2ech.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17968/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.510864 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2eiaB id: 2eiaB alignment found: /projects/compbio/experiments/models.97/pdb/2e/2eiaB/nostruct-align/2eiaB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2eiaB/nostruct-align/2eiaB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2e/2eiaB/nostruct-align/2eiaB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6603/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.028931 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2emo id: 2emo alignment found: /projects/compbio/experiments/models.97/pdb/2e/2emo/nostruct-align/2emo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2emo/nostruct-align/2emo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2e/2emo/nostruct-align/2emo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32061/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.814819 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2end id: 2end alignment found: /projects/compbio/experiments/models.97/pdb/2e/2end/nostruct-align/2end.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2end/nostruct-align/2end.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2e/2end/nostruct-align/2end.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13765/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.664917 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2eng id: 2eng alignment found: /projects/compbio/experiments/models.97/pdb/2e/2eng/nostruct-align/2eng.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2eng/nostruct-align/2eng.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2e/2eng/nostruct-align/2eng.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12858/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.581909 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2er7E id: 2er7E alignment found: /projects/compbio/experiments/models.97/pdb/2e/2er7E/nostruct-align/2er7E.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2er7E/nostruct-align/2er7E.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2e/2er7E/nostruct-align/2er7E.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25071/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.598877 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ercA id: 2ercA alignment found: /projects/compbio/experiments/models.97/pdb/2e/2ercA/nostruct-align/2ercA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2ercA/nostruct-align/2ercA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2e/2ercA/nostruct-align/2ercA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13901/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.627808 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2erl id: 2erl alignment found: /projects/compbio/experiments/models.97/pdb/2e/2erl/nostruct-align/2erl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2erl/nostruct-align/2erl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2e/2erl/nostruct-align/2erl.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30522/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.297974 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ezh id: 2ezh alignment found: /projects/compbio/experiments/models.97/pdb/2e/2ezh/nostruct-align/2ezh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2ezh/nostruct-align/2ezh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2e/2ezh/nostruct-align/2ezh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32200/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.584839 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ezi id: 2ezi alignment found: /projects/compbio/experiments/models.97/pdb/2e/2ezi/nostruct-align/2ezi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2ezi/nostruct-align/2ezi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2e/2ezi/nostruct-align/2ezi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21967/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.547852 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ezk id: 2ezk alignment found: /projects/compbio/experiments/models.97/pdb/2e/2ezk/nostruct-align/2ezk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2ezk/nostruct-align/2ezk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2e/2ezk/nostruct-align/2ezk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21855/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.546875 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ezl id: 2ezl alignment found: /projects/compbio/experiments/models.97/pdb/2e/2ezl/nostruct-align/2ezl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2ezl/nostruct-align/2ezl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2e/2ezl/nostruct-align/2ezl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11825/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.666870 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ezxA id: 2ezxA alignment found: /projects/compbio/experiments/models.97/pdb/2e/2ezxA/nostruct-align/2ezxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2ezxA/nostruct-align/2ezxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2e/2ezxA/nostruct-align/2ezxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6045/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.137817 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2fal id: 2fal alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fal/nostruct-align/2fal.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fal/nostruct-align/2fal.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fal/nostruct-align/2fal.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5285/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.441895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2fcbA id: 2fcbA alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fcbA/nostruct-align/2fcbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fcbA/nostruct-align/2fcbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fcbA/nostruct-align/2fcbA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31941/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -20.705933 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2fcr id: 2fcr alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fcr/nostruct-align/2fcr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fcr/nostruct-align/2fcr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fcr/nostruct-align/2fcr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3700/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.264893 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2fdn id: 2fdn alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fdn/nostruct-align/2fdn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fdn/nostruct-align/2fdn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fdn/nostruct-align/2fdn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26565/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.460815 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2fgf id: 2fgf alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fgf/nostruct-align/2fgf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fgf/nostruct-align/2fgf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fgf/nostruct-align/2fgf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5067/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.581909 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2fha id: 2fha alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fha/nostruct-align/2fha.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fha/nostruct-align/2fha.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fha/nostruct-align/2fha.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1646/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.009888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2fivA id: 2fivA alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fivA/nostruct-align/2fivA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fivA/nostruct-align/2fivA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fivA/nostruct-align/2fivA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2654/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.768799 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2fmr id: 2fmr alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fmr/nostruct-align/2fmr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fmr/nostruct-align/2fmr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fmr/nostruct-align/2fmr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11141/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.757935 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2fn2 id: 2fn2 alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fn2/nostruct-align/2fn2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fn2/nostruct-align/2fn2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fn2/nostruct-align/2fn2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14817/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.664917 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2fnb id: 2fnb alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fnb/nostruct-align/2fnb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fnb/nostruct-align/2fnb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fnb/nostruct-align/2fnb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14969/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.692871 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2fnbA id: 2fnbA alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fnbA/nostruct-align/2fnbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fnbA/nostruct-align/2fnbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fnbA/nostruct-align/2fnbA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9897/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.791870 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2fokA id: 2fokA alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fokA/nostruct-align/2fokA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fokA/nostruct-align/2fokA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fokA/nostruct-align/2fokA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21791/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.754883 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2fow id: 2fow alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fow/nostruct-align/2fow.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fow/nostruct-align/2fow.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fow/nostruct-align/2fow.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25698/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.395874 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2fox id: 2fox alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fox/nostruct-align/2fox.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fox/nostruct-align/2fox.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fox/nostruct-align/2fox.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16681/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.809937 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2frvA id: 2frvA alignment found: /projects/compbio/experiments/models.97/pdb/2f/2frvA/nostruct-align/2frvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2frvA/nostruct-align/2frvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2frvA/nostruct-align/2frvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7001/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.512817 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2frvB id: 2frvB alignment found: /projects/compbio/experiments/models.97/pdb/2f/2frvB/nostruct-align/2frvB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2frvB/nostruct-align/2frvB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2frvB/nostruct-align/2frvB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13355/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.606934 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2fsp id: 2fsp alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fsp/nostruct-align/2fsp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fsp/nostruct-align/2fsp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fsp/nostruct-align/2fsp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10471/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.441895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2fua id: 2fua alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fua/nostruct-align/2fua.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fua/nostruct-align/2fua.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fua/nostruct-align/2fua.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5882/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.956909 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2fx2 id: 2fx2 alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fx2/nostruct-align/2fx2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fx2/nostruct-align/2fx2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fx2/nostruct-align/2fx2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31215/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.441895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2fxb id: 2fxb alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fxb/nostruct-align/2fxb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fxb/nostruct-align/2fxb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2f/2fxb/nostruct-align/2fxb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15788/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.133911 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2gar id: 2gar alignment found: /projects/compbio/experiments/models.97/pdb/2g/2gar/nostruct-align/2gar.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2g/2gar/nostruct-align/2gar.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2g/2gar/nostruct-align/2gar.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25556/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.960938 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2gcc id: 2gcc alignment found: /projects/compbio/experiments/models.97/pdb/2g/2gcc/nostruct-align/2gcc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2g/2gcc/nostruct-align/2gcc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2g/2gcc/nostruct-align/2gcc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31330/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.010986 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2gdm id: 2gdm alignment found: /projects/compbio/experiments/models.97/pdb/2g/2gdm/nostruct-align/2gdm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2g/2gdm/nostruct-align/2gdm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2g/2gdm/nostruct-align/2gdm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17312/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.297974 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2gf1 id: 2gf1 alignment found: /projects/compbio/experiments/models.97/pdb/2g/2gf1/nostruct-align/2gf1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2g/2gf1/nostruct-align/2gf1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2g/2gf1/nostruct-align/2gf1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20766/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.369995 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2gliA id: 2gliA alignment found: /projects/compbio/experiments/models.97/pdb/2g/2gliA/nostruct-align/2gliA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2g/2gliA/nostruct-align/2gliA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2g/2gliA/nostruct-align/2gliA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11909/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -27.279907 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2glt_1 id: 2glt_1 alignment found: /projects/compbio4/experiments/models.97/domains/2g/2glt_1/nostruct-align/2glt_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2g/2glt_1/nostruct-align/2glt_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2g/2glt_1/nostruct-align/2glt_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20850/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.223877 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2glt_2 id: 2glt_2 alignment found: /projects/compbio4/experiments/models.97/domains/2g/2glt_2/nostruct-align/2glt_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2g/2glt_2/nostruct-align/2glt_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2g/2glt_2/nostruct-align/2glt_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21459/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.511963 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2gmfA id: 2gmfA alignment found: /projects/compbio/experiments/models.97/pdb/2g/2gmfA/nostruct-align/2gmfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2g/2gmfA/nostruct-align/2gmfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2g/2gmfA/nostruct-align/2gmfA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14782/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.191895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2gp8A id: 2gp8A alignment found: /projects/compbio/experiments/models.97/pdb/2g/2gp8A/nostruct-align/2gp8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2g/2gp8A/nostruct-align/2gp8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2g/2gp8A/nostruct-align/2gp8A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file ./tmp/tmp-build-weighted-model-alpha-29393/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.075928 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2gpr id: 2gpr alignment found: /projects/compbio/experiments/models.97/pdb/2g/2gpr/nostruct-align/2gpr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2g/2gpr/nostruct-align/2gpr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2g/2gpr/nostruct-align/2gpr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1773/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.491943 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2gsaA id: 2gsaA alignment found: /projects/compbio/experiments/models.97/pdb/2g/2gsaA/nostruct-align/2gsaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2g/2gsaA/nostruct-align/2gsaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2g/2gsaA/nostruct-align/2gsaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13973/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.779907 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2gstA_1 id: 2gstA_1 alignment found: /projects/compbio4/experiments/models.97/domains/2g/2gstA_1/nostruct-align/2gstA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2g/2gstA_1/nostruct-align/2gstA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2g/2gstA_1/nostruct-align/2gstA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15812/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.732910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2gstA_2 id: 2gstA_2 alignment found: /projects/compbio4/experiments/models.97/domains/2g/2gstA_2/nostruct-align/2gstA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2g/2gstA_2/nostruct-align/2gstA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2g/2gstA_2/nostruct-align/2gstA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31903/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.257935 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2hbg id: 2hbg alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hbg/nostruct-align/2hbg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hbg/nostruct-align/2hbg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hbg/nostruct-align/2hbg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3618/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.503906 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2hddA id: 2hddA alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hddA/nostruct-align/2hddA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hddA/nostruct-align/2hddA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hddA/nostruct-align/2hddA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18604/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.161865 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2hdhA id: 2hdhA alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hdhA/nostruct-align/2hdhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hdhA/nostruct-align/2hdhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hdhA/nostruct-align/2hdhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11817/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.988892 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2hfh id: 2hfh alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hfh/nostruct-align/2hfh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hfh/nostruct-align/2hfh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hfh/nostruct-align/2hfh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10155/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.874878 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2hft id: 2hft alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hft/nostruct-align/2hft.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hft/nostruct-align/2hft.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hft/nostruct-align/2hft.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4304/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.070923 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2hft_1 id: 2hft_1 alignment found: /projects/compbio4/experiments/models.97/domains/2h/2hft_1/nostruct-align/2hft_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2h/2hft_1/nostruct-align/2hft_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2h/2hft_1/nostruct-align/2hft_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23683/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.388916 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2hft_2 id: 2hft_2 alignment found: /projects/compbio4/experiments/models.97/domains/2h/2hft_2/nostruct-align/2hft_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2h/2hft_2/nostruct-align/2hft_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2h/2hft_2/nostruct-align/2hft_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9200/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.761963 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2hgf id: 2hgf alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hgf/nostruct-align/2hgf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hgf/nostruct-align/2hgf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hgf/nostruct-align/2hgf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21410/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.073975 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2hgsA id: 2hgsA alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hgsA/nostruct-align/2hgsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hgsA/nostruct-align/2hgsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hgsA/nostruct-align/2hgsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27051/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.022827 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2hhmA id: 2hhmA alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hhmA/nostruct-align/2hhmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hhmA/nostruct-align/2hhmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hhmA/nostruct-align/2hhmA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-11641/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.294922 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2hipA id: 2hipA alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hipA/nostruct-align/2hipA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hipA/nostruct-align/2hipA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hipA/nostruct-align/2hipA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4116/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.339844 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2hlcA id: 2hlcA alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hlcA/nostruct-align/2hlcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hlcA/nostruct-align/2hlcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hlcA/nostruct-align/2hlcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25062/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.054932 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2hmqA id: 2hmqA alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hmqA/nostruct-align/2hmqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hmqA/nostruct-align/2hmqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hmqA/nostruct-align/2hmqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4742/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.542969 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2hmx id: 2hmx alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hmx/nostruct-align/2hmx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hmx/nostruct-align/2hmx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hmx/nostruct-align/2hmx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29166/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.926880 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2hmzA id: 2hmzA alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hmzA/nostruct-align/2hmzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hmzA/nostruct-align/2hmzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hmzA/nostruct-align/2hmzA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8189/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.416992 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2hnp id: 2hnp alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hnp/nostruct-align/2hnp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hnp/nostruct-align/2hnp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hnp/nostruct-align/2hnp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25074/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.984863 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2hntE id: 2hntE alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hntE/nostruct-align/2hntE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hntE/nostruct-align/2hntE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hntE/nostruct-align/2hntE.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-13862/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.327881 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2hp8 id: 2hp8 alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hp8/nostruct-align/2hp8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hp8/nostruct-align/2hp8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hp8/nostruct-align/2hp8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27680/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.287842 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2hqi id: 2hqi alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hqi/nostruct-align/2hqi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hqi/nostruct-align/2hqi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hqi/nostruct-align/2hqi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26279/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.782959 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2hrvA id: 2hrvA alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hrvA/nostruct-align/2hrvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hrvA/nostruct-align/2hrvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hrvA/nostruct-align/2hrvA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13320/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.088867 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2hts id: 2hts alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hts/nostruct-align/2hts.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hts/nostruct-align/2hts.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hts/nostruct-align/2hts.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17790/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.453979 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2hvm id: 2hvm alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hvm/nostruct-align/2hvm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hvm/nostruct-align/2hvm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2h/2hvm/nostruct-align/2hvm.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10868/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.730957 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2i1b id: 2i1b alignment found: /projects/compbio/experiments/models.97/pdb/2i/2i1b/nostruct-align/2i1b.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2i/2i1b/nostruct-align/2i1b.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2i/2i1b/nostruct-align/2i1b.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-729/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.286987 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2if1 id: 2if1 alignment found: /projects/compbio/experiments/models.97/pdb/2i/2if1/nostruct-align/2if1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2i/2if1/nostruct-align/2if1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2i/2if1/nostruct-align/2if1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26736/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.367920 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ifo id: 2ifo alignment found: /projects/compbio/experiments/models.97/pdb/2i/2ifo/nostruct-align/2ifo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2i/2ifo/nostruct-align/2ifo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2i/2ifo/nostruct-align/2ifo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32090/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.284912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2igd id: 2igd alignment found: /projects/compbio/experiments/models.97/pdb/2i/2igd/nostruct-align/2igd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2i/2igd/nostruct-align/2igd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2i/2igd/nostruct-align/2igd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5286/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.809937 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ihl id: 2ihl alignment found: /projects/compbio/experiments/models.97/pdb/2i/2ihl/nostruct-align/2ihl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2i/2ihl/nostruct-align/2ihl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2i/2ihl/nostruct-align/2ihl.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13904/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.555908 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ila id: 2ila alignment found: /projects/compbio/experiments/models.97/pdb/2i/2ila/nostruct-align/2ila.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2i/2ila/nostruct-align/2ila.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2i/2ila/nostruct-align/2ila.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1007/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.825928 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ilk id: 2ilk alignment found: /projects/compbio/experiments/models.97/pdb/2i/2ilk/nostruct-align/2ilk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2i/2ilk/nostruct-align/2ilk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2i/2ilk/nostruct-align/2ilk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32619/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.959839 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2int id: 2int alignment found: /projects/compbio/experiments/models.97/pdb/2i/2int/nostruct-align/2int.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2i/2int/nostruct-align/2int.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2i/2int/nostruct-align/2int.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28982/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.099854 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2irfG id: 2irfG alignment found: /projects/compbio/experiments/models.97/pdb/2i/2irfG/nostruct-align/2irfG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2i/2irfG/nostruct-align/2irfG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2i/2irfG/nostruct-align/2irfG.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11863/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.594849 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2itg id: 2itg alignment found: /projects/compbio/experiments/models.97/pdb/2i/2itg/nostruct-align/2itg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2i/2itg/nostruct-align/2itg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2i/2itg/nostruct-align/2itg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20110/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.719849 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2izhB id: 2izhB alignment found: /projects/compbio/experiments/models.97/pdb/2i/2izhB/nostruct-align/2izhB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2i/2izhB/nostruct-align/2izhB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2i/2izhB/nostruct-align/2izhB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9213/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.903809 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2jhbA id: 2jhbA alignment found: /projects/compbio/experiments/models.97/pdb/2j/2jhbA/nostruct-align/2jhbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2j/2jhbA/nostruct-align/2jhbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2j/2jhbA/nostruct-align/2jhbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4129/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.727905 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2kaiA id: 2kaiA alignment found: /projects/compbio/experiments/models.97/pdb/2k/2kaiA/nostruct-align/2kaiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2k/2kaiA/nostruct-align/2kaiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2k/2kaiA/nostruct-align/2kaiA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-12362/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.718872 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2kauA id: 2kauA alignment found: /projects/compbio/experiments/models.97/pdb/2k/2kauA/nostruct-align/2kauA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2k/2kauA/nostruct-align/2kauA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2k/2kauA/nostruct-align/2kauA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21989/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.816895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2kauB id: 2kauB alignment found: /projects/compbio/experiments/models.97/pdb/2k/2kauB/nostruct-align/2kauB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2k/2kauB/nostruct-align/2kauB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2k/2kauB/nostruct-align/2kauB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-876/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.292847 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2kauC_1 id: 2kauC_1 alignment found: /projects/compbio4/experiments/models.97/domains/2k/2kauC_1/nostruct-align/2kauC_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2k/2kauC_1/nostruct-align/2kauC_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2k/2kauC_1/nostruct-align/2kauC_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31391/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.063843 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2kauC_2 id: 2kauC_2 alignment found: /projects/compbio4/experiments/models.97/domains/2k/2kauC_2/nostruct-align/2kauC_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2k/2kauC_2/nostruct-align/2kauC_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2k/2kauC_2/nostruct-align/2kauC_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18163/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.544922 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2kinA id: 2kinA alignment found: /projects/compbio/experiments/models.97/pdb/2k/2kinA/nostruct-align/2kinA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2k/2kinA/nostruct-align/2kinA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2k/2kinA/nostruct-align/2kinA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29518/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.172852 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2kinB id: 2kinB alignment found: /projects/compbio/experiments/models.97/pdb/2k/2kinB/nostruct-align/2kinB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2k/2kinB/nostruct-align/2kinB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2k/2kinB/nostruct-align/2kinB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13821/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.022827 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2knt id: 2knt alignment found: /projects/compbio/experiments/models.97/pdb/2k/2knt/nostruct-align/2knt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2k/2knt/nostruct-align/2knt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2k/2knt/nostruct-align/2knt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12832/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.838013 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2lbd id: 2lbd alignment found: /projects/compbio/experiments/models.97/pdb/2l/2lbd/nostruct-align/2lbd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2lbd/nostruct-align/2lbd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2l/2lbd/nostruct-align/2lbd.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12764/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.575928 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2lbp id: 2lbp alignment found: /projects/compbio/experiments/models.97/pdb/2l/2lbp/nostruct-align/2lbp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2lbp/nostruct-align/2lbp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2l/2lbp/nostruct-align/2lbp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4987/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.740845 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2lefA id: 2lefA alignment found: /projects/compbio/experiments/models.97/pdb/2l/2lefA/nostruct-align/2lefA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2lefA/nostruct-align/2lefA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2l/2lefA/nostruct-align/2lefA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19072/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.789917 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2leu id: 2leu alignment found: /projects/compbio/experiments/models.97/pdb/2l/2leu/nostruct-align/2leu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2leu/nostruct-align/2leu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2l/2leu/nostruct-align/2leu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22320/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.356812 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2lfb id: 2lfb alignment found: /projects/compbio/experiments/models.97/pdb/2l/2lfb/nostruct-align/2lfb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2lfb/nostruct-align/2lfb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2l/2lfb/nostruct-align/2lfb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12701/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.449829 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2lgsA id: 2lgsA alignment found: /projects/compbio/experiments/models.97/pdb/2l/2lgsA/nostruct-align/2lgsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2lgsA/nostruct-align/2lgsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2l/2lgsA/nostruct-align/2lgsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30657/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.286865 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2lh2 id: 2lh2 alignment found: /projects/compbio/experiments/models.97/pdb/2l/2lh2/nostruct-align/2lh2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2lh2/nostruct-align/2lh2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2l/2lh2/nostruct-align/2lh2.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19701/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.417847 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2lhb id: 2lhb alignment found: /projects/compbio/experiments/models.97/pdb/2l/2lhb/nostruct-align/2lhb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2lhb/nostruct-align/2lhb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2l/2lhb/nostruct-align/2lhb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10828/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.428833 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ligA id: 2ligA alignment found: /projects/compbio/experiments/models.97/pdb/2l/2ligA/nostruct-align/2ligA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2ligA/nostruct-align/2ligA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2l/2ligA/nostruct-align/2ligA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7892/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.458984 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2lisA id: 2lisA alignment found: /projects/compbio/experiments/models.97/pdb/2l/2lisA/nostruct-align/2lisA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2lisA/nostruct-align/2lisA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2l/2lisA/nostruct-align/2lisA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17284/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.605957 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2liv id: 2liv alignment found: /projects/compbio/experiments/models.97/pdb/2l/2liv/nostruct-align/2liv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2liv/nostruct-align/2liv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2l/2liv/nostruct-align/2liv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13187/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.227905 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ltnA id: 2ltnA alignment found: /projects/compbio/experiments/models.97/pdb/2l/2ltnA/nostruct-align/2ltnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2ltnA/nostruct-align/2ltnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2l/2ltnA/nostruct-align/2ltnA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3730/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.076904 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ltnB id: 2ltnB alignment found: /projects/compbio/experiments/models.97/pdb/2l/2ltnB/nostruct-align/2ltnB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2ltnB/nostruct-align/2ltnB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2l/2ltnB/nostruct-align/2ltnB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17405/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.121826 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2masA id: 2masA alignment found: /projects/compbio/experiments/models.97/pdb/2m/2masA/nostruct-align/2masA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2masA/nostruct-align/2masA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2masA/nostruct-align/2masA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22065/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.552856 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2matA id: 2matA alignment found: /projects/compbio/experiments/models.97/pdb/2m/2matA/nostruct-align/2matA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2matA/nostruct-align/2matA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2matA/nostruct-align/2matA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26410/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.490845 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2mbr id: 2mbr alignment found: /projects/compbio/experiments/models.97/pdb/2m/2mbr/nostruct-align/2mbr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2mbr/nostruct-align/2mbr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2mbr/nostruct-align/2mbr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5487/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.474976 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2mcm id: 2mcm alignment found: /projects/compbio/experiments/models.97/pdb/2m/2mcm/nostruct-align/2mcm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2mcm/nostruct-align/2mcm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2mcm/nostruct-align/2mcm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15185/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.076904 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2mev1 id: 2mev1 alignment found: /projects/compbio/experiments/models.97/pdb/2m/2mev1/nostruct-align/2mev1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2mev1/nostruct-align/2mev1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2mev1/nostruct-align/2mev1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14619/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.688965 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2mev2 id: 2mev2 alignment found: /projects/compbio/experiments/models.97/pdb/2m/2mev2/nostruct-align/2mev2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2mev2/nostruct-align/2mev2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2mev2/nostruct-align/2mev2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6233/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.686890 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2mev4 id: 2mev4 alignment found: /projects/compbio/experiments/models.97/pdb/2m/2mev4/nostruct-align/2mev4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2mev4/nostruct-align/2mev4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2mev4/nostruct-align/2mev4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22497/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.865967 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2mhr id: 2mhr alignment found: /projects/compbio/experiments/models.97/pdb/2m/2mhr/nostruct-align/2mhr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2mhr/nostruct-align/2mhr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2mhr/nostruct-align/2mhr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3434/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.636841 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2minA id: 2minA alignment found: /projects/compbio/experiments/models.97/pdb/2m/2minA/nostruct-align/2minA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2minA/nostruct-align/2minA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2minA/nostruct-align/2minA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18641/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.921875 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2mltA id: 2mltA alignment found: /projects/compbio/experiments/models.97/pdb/2m/2mltA/nostruct-align/2mltA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2mltA/nostruct-align/2mltA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2mltA/nostruct-align/2mltA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31823/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.871826 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2mnr id: 2mnr alignment found: /projects/compbio/experiments/models.97/pdb/2m/2mnr/nostruct-align/2mnr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2mnr/nostruct-align/2mnr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2mnr/nostruct-align/2mnr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12218/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -165.119873 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2mnr_1 id: 2mnr_1 alignment found: /projects/compbio4/experiments/models.97/domains/2m/2mnr_1/nostruct-align/2mnr_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2m/2mnr_1/nostruct-align/2mnr_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2m/2mnr_1/nostruct-align/2mnr_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25300/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -113.706909 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2mnr_2 id: 2mnr_2 alignment found: /projects/compbio4/experiments/models.97/domains/2m/2mnr_2/nostruct-align/2mnr_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2m/2mnr_2/nostruct-align/2mnr_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2m/2mnr_2/nostruct-align/2mnr_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3867/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.571899 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2mprA id: 2mprA alignment found: /projects/compbio/experiments/models.97/pdb/2m/2mprA/nostruct-align/2mprA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2mprA/nostruct-align/2mprA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2mprA/nostruct-align/2mprA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15021/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.280884 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2mrb id: 2mrb alignment found: /projects/compbio/experiments/models.97/pdb/2m/2mrb/nostruct-align/2mrb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2mrb/nostruct-align/2mrb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2mrb/nostruct-align/2mrb.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10170/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.655884 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ms2A id: 2ms2A alignment found: /projects/compbio/experiments/models.97/pdb/2m/2ms2A/nostruct-align/2ms2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2ms2A/nostruct-align/2ms2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2ms2A/nostruct-align/2ms2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1988/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.833008 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2msbA id: 2msbA alignment found: /projects/compbio/experiments/models.97/pdb/2m/2msbA/nostruct-align/2msbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2msbA/nostruct-align/2msbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2msbA/nostruct-align/2msbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16542/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.542847 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2msbB id: 2msbB alignment found: /projects/compbio/experiments/models.97/pdb/2m/2msbB/nostruct-align/2msbB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2msbB/nostruct-align/2msbB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2msbB/nostruct-align/2msbB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26152/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.943970 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2mtaC id: 2mtaC alignment found: /projects/compbio/experiments/models.97/pdb/2m/2mtaC/nostruct-align/2mtaC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2mtaC/nostruct-align/2mtaC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2mtaC/nostruct-align/2mtaC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14151/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.160889 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2myo id: 2myo alignment found: /projects/compbio/experiments/models.97/pdb/2m/2myo/nostruct-align/2myo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2myo/nostruct-align/2myo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2myo/nostruct-align/2myo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2272/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.178833 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2myr id: 2myr alignment found: /projects/compbio/experiments/models.97/pdb/2m/2myr/nostruct-align/2myr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2myr/nostruct-align/2myr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2myr/nostruct-align/2myr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19790/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.026855 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2mysB id: 2mysB alignment found: /projects/compbio/experiments/models.97/pdb/2m/2mysB/nostruct-align/2mysB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2mysB/nostruct-align/2mysB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2m/2mysB/nostruct-align/2mysB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28915/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.828979 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2nacA id: 2nacA alignment found: /projects/compbio/experiments/models.97/pdb/2n/2nacA/nostruct-align/2nacA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2n/2nacA/nostruct-align/2nacA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2n/2nacA/nostruct-align/2nacA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9209/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.334839 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2nacA_1 id: 2nacA_1 alignment found: /projects/compbio4/experiments/models.97/domains/2n/2nacA_1/nostruct-align/2nacA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2n/2nacA_1/nostruct-align/2nacA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2n/2nacA_1/nostruct-align/2nacA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29876/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.562866 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2nacA_2 id: 2nacA_2 alignment found: /projects/compbio4/experiments/models.97/domains/2n/2nacA_2/nostruct-align/2nacA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2n/2nacA_2/nostruct-align/2nacA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2n/2nacA_2/nostruct-align/2nacA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24596/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.067871 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2nadA id: 2nadA alignment found: /projects/compbio/experiments/models.97/pdb/2n/2nadA/nostruct-align/2nadA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2n/2nadA/nostruct-align/2nadA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2n/2nadA/nostruct-align/2nadA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29075/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.674927 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2napA id: 2napA alignment found: /projects/compbio/experiments/models.97/pdb/2n/2napA/nostruct-align/2napA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2n/2napA/nostruct-align/2napA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2n/2napA/nostruct-align/2napA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13367/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.235840 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ncm id: 2ncm alignment found: /projects/compbio/experiments/models.97/pdb/2n/2ncm/nostruct-align/2ncm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2n/2ncm/nostruct-align/2ncm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2n/2ncm/nostruct-align/2ncm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20923/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.027954 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2nef id: 2nef alignment found: /projects/compbio/experiments/models.97/pdb/2n/2nef/nostruct-align/2nef.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2n/2nef/nostruct-align/2nef.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2n/2nef/nostruct-align/2nef.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27822/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.462891 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2new id: 2new alignment found: /projects/compbio/experiments/models.97/pdb/2n/2new/nostruct-align/2new.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2n/2new/nostruct-align/2new.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2n/2new/nostruct-align/2new.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11594/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.418945 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2nllB id: 2nllB alignment found: /projects/compbio/experiments/models.97/pdb/2n/2nllB/nostruct-align/2nllB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2n/2nllB/nostruct-align/2nllB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2n/2nllB/nostruct-align/2nllB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32644/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.075806 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2nlrA id: 2nlrA alignment found: /projects/compbio/experiments/models.97/pdb/2n/2nlrA/nostruct-align/2nlrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2n/2nlrA/nostruct-align/2nlrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2n/2nlrA/nostruct-align/2nlrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9953/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.875854 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2nmbA id: 2nmbA alignment found: /projects/compbio/experiments/models.97/pdb/2n/2nmbA/nostruct-align/2nmbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2n/2nmbA/nostruct-align/2nmbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2n/2nmbA/nostruct-align/2nmbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29558/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.568970 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2nsyA id: 2nsyA alignment found: /projects/compbio/experiments/models.97/pdb/2n/2nsyA/nostruct-align/2nsyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2n/2nsyA/nostruct-align/2nsyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2n/2nsyA/nostruct-align/2nsyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11405/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.905884 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2occA id: 2occA alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occA/nostruct-align/2occA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occA/nostruct-align/2occA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2o/2occA/nostruct-align/2occA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17696/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.486816 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2occB id: 2occB alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occB/nostruct-align/2occB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occB/nostruct-align/2occB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2o/2occB/nostruct-align/2occB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30124/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.323853 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2occD id: 2occD alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occD/nostruct-align/2occD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occD/nostruct-align/2occD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2o/2occD/nostruct-align/2occD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23912/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.531860 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2occE id: 2occE alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occE/nostruct-align/2occE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occE/nostruct-align/2occE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2o/2occE/nostruct-align/2occE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5632/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.604980 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2occF id: 2occF alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occF/nostruct-align/2occF.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occF/nostruct-align/2occF.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2o/2occF/nostruct-align/2occF.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19796/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.020874 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2occG id: 2occG alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occG/nostruct-align/2occG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occG/nostruct-align/2occG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2o/2occG/nostruct-align/2occG.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2028/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.022827 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2occH id: 2occH alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occH/nostruct-align/2occH.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occH/nostruct-align/2occH.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2o/2occH/nostruct-align/2occH.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14988/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.407837 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2occI id: 2occI alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occI/nostruct-align/2occI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occI/nostruct-align/2occI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2o/2occI/nostruct-align/2occI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12405/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.500977 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2occJ id: 2occJ alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occJ/nostruct-align/2occJ.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occJ/nostruct-align/2occJ.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2o/2occJ/nostruct-align/2occJ.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28600/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.931885 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2occK id: 2occK alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occK/nostruct-align/2occK.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occK/nostruct-align/2occK.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2o/2occK/nostruct-align/2occK.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14435/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.023926 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2occL id: 2occL alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occL/nostruct-align/2occL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occL/nostruct-align/2occL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2o/2occL/nostruct-align/2occL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-245/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.746826 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2occM id: 2occM alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occM/nostruct-align/2occM.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occM/nostruct-align/2occM.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2o/2occM/nostruct-align/2occM.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7444/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.166870 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ohxA id: 2ohxA alignment found: /projects/compbio/experiments/models.97/pdb/2o/2ohxA/nostruct-align/2ohxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2ohxA/nostruct-align/2ohxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2o/2ohxA/nostruct-align/2ohxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20147/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.529907 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ohxA_1 id: 2ohxA_1 alignment found: /projects/compbio4/experiments/models.97/domains/2o/2ohxA_1/nostruct-align/2ohxA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2o/2ohxA_1/nostruct-align/2ohxA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2o/2ohxA_1/nostruct-align/2ohxA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5935/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.095947 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ohxA_2 id: 2ohxA_2 alignment found: /projects/compbio4/experiments/models.97/domains/2o/2ohxA_2/nostruct-align/2ohxA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2o/2ohxA_2/nostruct-align/2ohxA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2o/2ohxA_2/nostruct-align/2ohxA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4220/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.108887 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2olbA id: 2olbA alignment found: /projects/compbio/experiments/models.97/pdb/2o/2olbA/nostruct-align/2olbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2olbA/nostruct-align/2olbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2o/2olbA/nostruct-align/2olbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22203/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.323853 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2omf id: 2omf alignment found: /projects/compbio/experiments/models.97/pdb/2o/2omf/nostruct-align/2omf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2omf/nostruct-align/2omf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2o/2omf/nostruct-align/2omf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18019/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.000854 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ovo id: 2ovo alignment found: /projects/compbio/experiments/models.97/pdb/2o/2ovo/nostruct-align/2ovo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2ovo/nostruct-align/2ovo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2o/2ovo/nostruct-align/2ovo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17970/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.827881 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2pac id: 2pac alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pac/nostruct-align/2pac.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pac/nostruct-align/2pac.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pac/nostruct-align/2pac.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16145/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.357910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2pcdA id: 2pcdA alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pcdA/nostruct-align/2pcdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pcdA/nostruct-align/2pcdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pcdA/nostruct-align/2pcdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19039/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.279907 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2pcdM id: 2pcdM alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pcdM/nostruct-align/2pcdM.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pcdM/nostruct-align/2pcdM.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pcdM/nostruct-align/2pcdM.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9678/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.125854 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2pdd id: 2pdd alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pdd/nostruct-align/2pdd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pdd/nostruct-align/2pdd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pdd/nostruct-align/2pdd.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-9413/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.096924 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2pde id: 2pde alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pde/nostruct-align/2pde.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pde/nostruct-align/2pde.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pde/nostruct-align/2pde.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26655/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.096924 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2pec id: 2pec alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pec/nostruct-align/2pec.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pec/nostruct-align/2pec.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pec/nostruct-align/2pec.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27565/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.333984 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2pf1 id: 2pf1 alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pf1/nostruct-align/2pf1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pf1/nostruct-align/2pf1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pf1/nostruct-align/2pf1.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26780/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.657959 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2pgd id: 2pgd alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pgd/nostruct-align/2pgd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pgd/nostruct-align/2pgd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pgd/nostruct-align/2pgd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-548/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.665894 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2pgd_1 id: 2pgd_1 alignment found: /projects/compbio4/experiments/models.97/domains/2p/2pgd_1/nostruct-align/2pgd_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2p/2pgd_1/nostruct-align/2pgd_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2p/2pgd_1/nostruct-align/2pgd_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22590/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.719971 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2pgd_2 id: 2pgd_2 alignment found: /projects/compbio4/experiments/models.97/domains/2p/2pgd_2/nostruct-align/2pgd_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2p/2pgd_2/nostruct-align/2pgd_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2p/2pgd_2/nostruct-align/2pgd_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30805/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.374878 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2pgi id: 2pgi alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pgi/nostruct-align/2pgi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pgi/nostruct-align/2pgi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pgi/nostruct-align/2pgi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27089/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.618896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2phlA id: 2phlA alignment found: /projects/compbio/experiments/models.97/pdb/2p/2phlA/nostruct-align/2phlA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2phlA/nostruct-align/2phlA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2phlA/nostruct-align/2phlA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14528/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.119873 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2phy id: 2phy alignment found: /projects/compbio/experiments/models.97/pdb/2p/2phy/nostruct-align/2phy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2phy/nostruct-align/2phy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2phy/nostruct-align/2phy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19650/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.818970 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2pia id: 2pia alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pia/nostruct-align/2pia.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pia/nostruct-align/2pia.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pia/nostruct-align/2pia.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18200/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.344971 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2pia_1 id: 2pia_1 alignment found: /projects/compbio4/experiments/models.97/domains/2p/2pia_1/nostruct-align/2pia_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2p/2pia_1/nostruct-align/2pia_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2p/2pia_1/nostruct-align/2pia_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29531/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.997925 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2pia_2 id: 2pia_2 alignment found: /projects/compbio4/experiments/models.97/domains/2p/2pia_2/nostruct-align/2pia_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2p/2pia_2/nostruct-align/2pia_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2p/2pia_2/nostruct-align/2pia_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4047/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.476929 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2pia_3 id: 2pia_3 alignment found: /projects/compbio4/experiments/models.97/domains/2p/2pia_3/nostruct-align/2pia_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2p/2pia_3/nostruct-align/2pia_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2p/2pia_3/nostruct-align/2pia_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12980/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.293945 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2pii id: 2pii alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pii/nostruct-align/2pii.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pii/nostruct-align/2pii.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pii/nostruct-align/2pii.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8203/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.140869 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2pil id: 2pil alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pil/nostruct-align/2pil.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pil/nostruct-align/2pil.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pil/nostruct-align/2pil.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11545/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.018799 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2pkaA id: 2pkaA alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pkaA/nostruct-align/2pkaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pkaA/nostruct-align/2pkaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pkaA/nostruct-align/2pkaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19752/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.271973 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2plc id: 2plc alignment found: /projects/compbio/experiments/models.97/pdb/2p/2plc/nostruct-align/2plc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2plc/nostruct-align/2plc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2plc/nostruct-align/2plc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17632/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.398926 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2pldA id: 2pldA alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pldA/nostruct-align/2pldA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pldA/nostruct-align/2pldA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pldA/nostruct-align/2pldA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18929/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.454956 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2pleA id: 2pleA alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pleA/nostruct-align/2pleA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pleA/nostruct-align/2pleA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pleA/nostruct-align/2pleA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21569/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.008789 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2plt id: 2plt alignment found: /projects/compbio/experiments/models.97/pdb/2p/2plt/nostruct-align/2plt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2plt/nostruct-align/2plt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2plt/nostruct-align/2plt.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29879/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.329956 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2pna id: 2pna alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pna/nostruct-align/2pna.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pna/nostruct-align/2pna.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pna/nostruct-align/2pna.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23490/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.579834 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2polA id: 2polA alignment found: /projects/compbio/experiments/models.97/pdb/2p/2polA/nostruct-align/2polA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2polA/nostruct-align/2polA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2polA/nostruct-align/2polA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4418/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.210938 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2polA_1 id: 2polA_1 alignment found: /projects/compbio4/experiments/models.97/domains/2p/2polA_1/nostruct-align/2polA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2p/2polA_1/nostruct-align/2polA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2p/2polA_1/nostruct-align/2polA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28276/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.653809 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2polA_2 id: 2polA_2 alignment found: /projects/compbio4/experiments/models.97/domains/2p/2polA_2/nostruct-align/2polA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2p/2polA_2/nostruct-align/2polA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2p/2polA_2/nostruct-align/2polA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31601/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.147949 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2polA_3 id: 2polA_3 alignment found: /projects/compbio4/experiments/models.97/domains/2p/2polA_3/nostruct-align/2polA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2p/2polA_3/nostruct-align/2polA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2p/2polA_3/nostruct-align/2polA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21593/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.974976 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2por id: 2por alignment found: /projects/compbio/experiments/models.97/pdb/2p/2por/nostruct-align/2por.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2por/nostruct-align/2por.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2por/nostruct-align/2por.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29556/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.338867 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2prd id: 2prd alignment found: /projects/compbio/experiments/models.97/pdb/2p/2prd/nostruct-align/2prd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2prd/nostruct-align/2prd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2prd/nostruct-align/2prd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25872/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.256958 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2prgA id: 2prgA alignment found: /projects/compbio/experiments/models.97/pdb/2p/2prgA/nostruct-align/2prgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2prgA/nostruct-align/2prgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2prgA/nostruct-align/2prgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12001/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.221924 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2prgC id: 2prgC alignment found: /projects/compbio/experiments/models.97/pdb/2p/2prgC/nostruct-align/2prgC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2prgC/nostruct-align/2prgC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2prgC/nostruct-align/2prgC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19685/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.800903 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2prk id: 2prk alignment found: /projects/compbio/experiments/models.97/pdb/2p/2prk/nostruct-align/2prk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2prk/nostruct-align/2prk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2prk/nostruct-align/2prk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9784/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.750854 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2pspA id: 2pspA alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pspA/nostruct-align/2pspA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pspA/nostruct-align/2pspA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pspA/nostruct-align/2pspA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14233/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.575928 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2pta id: 2pta alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pta/nostruct-align/2pta.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pta/nostruct-align/2pta.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pta/nostruct-align/2pta.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11257/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.874878 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ptd id: 2ptd alignment found: /projects/compbio/experiments/models.97/pdb/2p/2ptd/nostruct-align/2ptd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2ptd/nostruct-align/2ptd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2ptd/nostruct-align/2ptd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6422/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.260986 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2pth id: 2pth alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pth/nostruct-align/2pth.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pth/nostruct-align/2pth.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pth/nostruct-align/2pth.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27739/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.537964 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ptl id: 2ptl alignment found: /projects/compbio/experiments/models.97/pdb/2p/2ptl/nostruct-align/2ptl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2ptl/nostruct-align/2ptl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2ptl/nostruct-align/2ptl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11335/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.436890 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2pvb id: 2pvb alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pvb/nostruct-align/2pvb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pvb/nostruct-align/2pvb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pvb/nostruct-align/2pvb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22317/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.582886 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2pvbA id: 2pvbA alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pvbA/nostruct-align/2pvbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pvbA/nostruct-align/2pvbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pvbA/nostruct-align/2pvbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7146/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.823975 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2pviA id: 2pviA alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pviA/nostruct-align/2pviA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pviA/nostruct-align/2pviA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2p/2pviA/nostruct-align/2pviA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13174/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.169800 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2qwc id: 2qwc alignment found: /projects/compbio/experiments/models.97/pdb/2q/2qwc/nostruct-align/2qwc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2q/2qwc/nostruct-align/2qwc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2q/2qwc/nostruct-align/2qwc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11845/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.248901 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2reb id: 2reb alignment found: /projects/compbio/experiments/models.97/pdb/2r/2reb/nostruct-align/2reb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2r/2reb/nostruct-align/2reb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2r/2reb/nostruct-align/2reb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17017/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.372925 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2reb_1 id: 2reb_1 alignment found: /projects/compbio4/experiments/models.97/domains/2r/2reb_1/nostruct-align/2reb_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2r/2reb_1/nostruct-align/2reb_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2r/2reb_1/nostruct-align/2reb_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26273/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.688965 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2reb_2 id: 2reb_2 alignment found: /projects/compbio4/experiments/models.97/domains/2r/2reb_2/nostruct-align/2reb_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2r/2reb_2/nostruct-align/2reb_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2r/2reb_2/nostruct-align/2reb_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18927/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.485840 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2rgf id: 2rgf alignment found: /projects/compbio/experiments/models.97/pdb/2r/2rgf/nostruct-align/2rgf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2r/2rgf/nostruct-align/2rgf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2r/2rgf/nostruct-align/2rgf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9051/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.279785 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2rhe id: 2rhe alignment found: /projects/compbio/experiments/models.97/pdb/2r/2rhe/nostruct-align/2rhe.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2r/2rhe/nostruct-align/2rhe.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2r/2rhe/nostruct-align/2rhe.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22191/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.903931 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2rmpA id: 2rmpA alignment found: /projects/compbio/experiments/models.97/pdb/2r/2rmpA/nostruct-align/2rmpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2r/2rmpA/nostruct-align/2rmpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2r/2rmpA/nostruct-align/2rmpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7333/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.652832 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2rn2 id: 2rn2 alignment found: /projects/compbio/experiments/models.97/pdb/2r/2rn2/nostruct-align/2rn2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2r/2rn2/nostruct-align/2rn2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2r/2rn2/nostruct-align/2rn2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17523/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.382935 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2rslA id: 2rslA alignment found: /projects/compbio/experiments/models.97/pdb/2r/2rslA/nostruct-align/2rslA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2r/2rslA/nostruct-align/2rslA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2r/2rslA/nostruct-align/2rslA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13503/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.998901 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2rspA id: 2rspA alignment found: /projects/compbio/experiments/models.97/pdb/2r/2rspA/nostruct-align/2rspA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2r/2rspA/nostruct-align/2rspA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2r/2rspA/nostruct-align/2rspA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21048/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.906982 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2rspB id: 2rspB alignment found: /projects/compbio/experiments/models.97/pdb/2r/2rspB/nostruct-align/2rspB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2r/2rspB/nostruct-align/2rspB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2r/2rspB/nostruct-align/2rspB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5072/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.175903 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2rveA id: 2rveA alignment found: /projects/compbio/experiments/models.97/pdb/2r/2rveA/nostruct-align/2rveA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2r/2rveA/nostruct-align/2rveA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2r/2rveA/nostruct-align/2rveA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-631/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.262939 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2sak id: 2sak alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sak/nostruct-align/2sak.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sak/nostruct-align/2sak.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2sak/nostruct-align/2sak.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30877/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.470947 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2sas id: 2sas alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sas/nostruct-align/2sas.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sas/nostruct-align/2sas.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2sas/nostruct-align/2sas.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22261/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.503906 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2sblB_1 id: 2sblB_1 alignment found: /projects/compbio4/experiments/models.97/domains/2s/2sblB_1/nostruct-align/2sblB_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2s/2sblB_1/nostruct-align/2sblB_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2s/2sblB_1/nostruct-align/2sblB_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5380/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.674805 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2sblB_2 id: 2sblB_2 alignment found: /projects/compbio4/experiments/models.97/domains/2s/2sblB_2/nostruct-align/2sblB_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2s/2sblB_2/nostruct-align/2sblB_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2s/2sblB_2/nostruct-align/2sblB_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2191/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.114868 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2scpA id: 2scpA alignment found: /projects/compbio/experiments/models.97/pdb/2s/2scpA/nostruct-align/2scpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2scpA/nostruct-align/2scpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2scpA/nostruct-align/2scpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3874/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.118896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2scuA id: 2scuA alignment found: /projects/compbio/experiments/models.97/pdb/2s/2scuA/nostruct-align/2scuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2scuA/nostruct-align/2scuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2scuA/nostruct-align/2scuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31306/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.478882 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2scuB id: 2scuB alignment found: /projects/compbio/experiments/models.97/pdb/2s/2scuB/nostruct-align/2scuB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2scuB/nostruct-align/2scuB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2scuB/nostruct-align/2scuB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29890/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.922852 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2sfa id: 2sfa alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sfa/nostruct-align/2sfa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sfa/nostruct-align/2sfa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2sfa/nostruct-align/2sfa.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8973/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.927856 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2sga id: 2sga alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sga/nostruct-align/2sga.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sga/nostruct-align/2sga.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2sga/nostruct-align/2sga.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23206/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.644897 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2shkA id: 2shkA alignment found: /projects/compbio/experiments/models.97/pdb/2s/2shkA/nostruct-align/2shkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2shkA/nostruct-align/2shkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2shkA/nostruct-align/2shkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17812/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.714844 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2shpA id: 2shpA alignment found: /projects/compbio/experiments/models.97/pdb/2s/2shpA/nostruct-align/2shpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2shpA/nostruct-align/2shpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2shpA/nostruct-align/2shpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1599/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.267944 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2sicI id: 2sicI alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sicI/nostruct-align/2sicI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sicI/nostruct-align/2sicI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2sicI/nostruct-align/2sicI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4497/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.117920 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2sil id: 2sil alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sil/nostruct-align/2sil.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sil/nostruct-align/2sil.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2sil/nostruct-align/2sil.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9094/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.280884 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2sivA id: 2sivA alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sivA/nostruct-align/2sivA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sivA/nostruct-align/2sivA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2sivA/nostruct-align/2sivA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6592/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.326904 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2sivB id: 2sivB alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sivB/nostruct-align/2sivB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sivB/nostruct-align/2sivB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2sivB/nostruct-align/2sivB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14677/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.956909 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2sli id: 2sli alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sli/nostruct-align/2sli.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sli/nostruct-align/2sli.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2sli/nostruct-align/2sli.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21543/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.945801 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2sn3 id: 2sn3 alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sn3/nostruct-align/2sn3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sn3/nostruct-align/2sn3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2sn3/nostruct-align/2sn3.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15309/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.180908 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2sns id: 2sns alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sns/nostruct-align/2sns.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sns/nostruct-align/2sns.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2sns/nostruct-align/2sns.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25747/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.149902 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2snv id: 2snv alignment found: /projects/compbio/experiments/models.97/pdb/2s/2snv/nostruct-align/2snv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2snv/nostruct-align/2snv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2snv/nostruct-align/2snv.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22497/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.796875 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2spcA id: 2spcA alignment found: /projects/compbio/experiments/models.97/pdb/2s/2spcA/nostruct-align/2spcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2spcA/nostruct-align/2spcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2spcA/nostruct-align/2spcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13320/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.694824 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2spo id: 2spo alignment found: /projects/compbio/experiments/models.97/pdb/2s/2spo/nostruct-align/2spo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2spo/nostruct-align/2spo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2spo/nostruct-align/2spo.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24770/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.405884 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2sqcA id: 2sqcA alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sqcA/nostruct-align/2sqcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sqcA/nostruct-align/2sqcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2sqcA/nostruct-align/2sqcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31486/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.581909 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2std id: 2std alignment found: /projects/compbio/experiments/models.97/pdb/2s/2std/nostruct-align/2std.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2std/nostruct-align/2std.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2std/nostruct-align/2std.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9223/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.127930 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2stv id: 2stv alignment found: /projects/compbio/experiments/models.97/pdb/2s/2stv/nostruct-align/2stv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2stv/nostruct-align/2stv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2stv/nostruct-align/2stv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30865/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.979858 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2sxl id: 2sxl alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sxl/nostruct-align/2sxl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sxl/nostruct-align/2sxl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2s/2sxl/nostruct-align/2sxl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23225/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.145874 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2tbd id: 2tbd alignment found: /projects/compbio/experiments/models.97/pdb/2t/2tbd/nostruct-align/2tbd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2tbd/nostruct-align/2tbd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2t/2tbd/nostruct-align/2tbd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21333/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.323853 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2tbvA id: 2tbvA alignment found: /projects/compbio/experiments/models.97/pdb/2t/2tbvA/nostruct-align/2tbvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2tbvA/nostruct-align/2tbvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2t/2tbvA/nostruct-align/2tbvA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-594/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.421875 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2tct id: 2tct alignment found: /projects/compbio/experiments/models.97/pdb/2t/2tct/nostruct-align/2tct.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2tct/nostruct-align/2tct.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2t/2tct/nostruct-align/2tct.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8855/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.677856 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2tgf id: 2tgf alignment found: /projects/compbio/experiments/models.97/pdb/2t/2tgf/nostruct-align/2tgf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2tgf/nostruct-align/2tgf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2t/2tgf/nostruct-align/2tgf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32704/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.258789 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2tgi id: 2tgi alignment found: /projects/compbio/experiments/models.97/pdb/2t/2tgi/nostruct-align/2tgi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2tgi/nostruct-align/2tgi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2t/2tgi/nostruct-align/2tgi.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14410/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.807983 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2thiA id: 2thiA alignment found: /projects/compbio/experiments/models.97/pdb/2t/2thiA/nostruct-align/2thiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2thiA/nostruct-align/2thiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2t/2thiA/nostruct-align/2thiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22274/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.355957 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2tmdA id: 2tmdA alignment found: /projects/compbio/experiments/models.97/pdb/2t/2tmdA/nostruct-align/2tmdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2tmdA/nostruct-align/2tmdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2t/2tmdA/nostruct-align/2tmdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29306/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.835815 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2tmdA_1 id: 2tmdA_1 alignment found: /projects/compbio4/experiments/models.97/domains/2t/2tmdA_1/nostruct-align/2tmdA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2t/2tmdA_1/nostruct-align/2tmdA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2t/2tmdA_1/nostruct-align/2tmdA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29444/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.803833 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2tmdA_2 id: 2tmdA_2 alignment found: /projects/compbio4/experiments/models.97/domains/2t/2tmdA_2/nostruct-align/2tmdA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2t/2tmdA_2/nostruct-align/2tmdA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2t/2tmdA_2/nostruct-align/2tmdA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15196/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.489868 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2tmdA_3 id: 2tmdA_3 alignment found: /projects/compbio4/experiments/models.97/domains/2t/2tmdA_3/nostruct-align/2tmdA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2t/2tmdA_3/nostruct-align/2tmdA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2t/2tmdA_3/nostruct-align/2tmdA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7317/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.958862 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2tmkA id: 2tmkA alignment found: /projects/compbio/experiments/models.97/pdb/2t/2tmkA/nostruct-align/2tmkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2tmkA/nostruct-align/2tmkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2t/2tmkA/nostruct-align/2tmkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29282/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.778931 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2tmvP id: 2tmvP alignment found: /projects/compbio/experiments/models.97/pdb/2t/2tmvP/nostruct-align/2tmvP.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2tmvP/nostruct-align/2tmvP.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2t/2tmvP/nostruct-align/2tmvP.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12973/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.908813 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2tnfA id: 2tnfA alignment found: /projects/compbio/experiments/models.97/pdb/2t/2tnfA/nostruct-align/2tnfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2tnfA/nostruct-align/2tnfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2t/2tnfA/nostruct-align/2tnfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2138/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.148926 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2tprA_1 id: 2tprA_1 alignment found: /projects/compbio4/experiments/models.97/domains/2t/2tprA_1/nostruct-align/2tprA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2t/2tprA_1/nostruct-align/2tprA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2t/2tprA_1/nostruct-align/2tprA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20910/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.561890 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2tprA_2 id: 2tprA_2 alignment found: /projects/compbio4/experiments/models.97/domains/2t/2tprA_2/nostruct-align/2tprA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2t/2tprA_2/nostruct-align/2tprA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2t/2tprA_2/nostruct-align/2tprA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23950/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.725952 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2tprA_3 id: 2tprA_3 alignment found: /projects/compbio4/experiments/models.97/domains/2t/2tprA_3/nostruct-align/2tprA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2t/2tprA_3/nostruct-align/2tprA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2t/2tprA_3/nostruct-align/2tprA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14521/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.363892 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2tpsA id: 2tpsA alignment found: /projects/compbio/experiments/models.97/pdb/2t/2tpsA/nostruct-align/2tpsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2tpsA/nostruct-align/2tpsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2t/2tpsA/nostruct-align/2tpsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-420/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.213989 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2trcP id: 2trcP alignment found: /projects/compbio/experiments/models.97/pdb/2t/2trcP/nostruct-align/2trcP.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2trcP/nostruct-align/2trcP.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2t/2trcP/nostruct-align/2trcP.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10375/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.331909 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2trxA id: 2trxA alignment found: /projects/compbio/experiments/models.97/pdb/2t/2trxA/nostruct-align/2trxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2trxA/nostruct-align/2trxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2t/2trxA/nostruct-align/2trxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13873/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.173828 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ts1 id: 2ts1 alignment found: /projects/compbio/experiments/models.97/pdb/2t/2ts1/nostruct-align/2ts1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2ts1/nostruct-align/2ts1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2t/2ts1/nostruct-align/2ts1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7145/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.711792 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ts1_1 id: 2ts1_1 alignment found: /projects/compbio4/experiments/models.97/domains/2t/2ts1_1/nostruct-align/2ts1_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2t/2ts1_1/nostruct-align/2ts1_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2t/2ts1_1/nostruct-align/2ts1_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27852/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.359863 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ts1_2 id: 2ts1_2 alignment found: /projects/compbio4/experiments/models.97/domains/2t/2ts1_2/nostruct-align/2ts1_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2t/2ts1_2/nostruct-align/2ts1_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2t/2ts1_2/nostruct-align/2ts1_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31099/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.388916 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2tysA id: 2tysA alignment found: /projects/compbio/experiments/models.97/pdb/2t/2tysA/nostruct-align/2tysA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2tysA/nostruct-align/2tysA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2t/2tysA/nostruct-align/2tysA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24010/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.183838 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2tysB id: 2tysB alignment found: /projects/compbio/experiments/models.97/pdb/2t/2tysB/nostruct-align/2tysB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2tysB/nostruct-align/2tysB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2t/2tysB/nostruct-align/2tysB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22751/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.421875 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2u1a id: 2u1a alignment found: /projects/compbio/experiments/models.97/pdb/2u/2u1a/nostruct-align/2u1a.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2u/2u1a/nostruct-align/2u1a.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2u/2u1a/nostruct-align/2u1a.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-821/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.353882 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2u2fA id: 2u2fA alignment found: /projects/compbio/experiments/models.97/pdb/2u/2u2fA/nostruct-align/2u2fA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2u/2u2fA/nostruct-align/2u2fA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2u/2u2fA/nostruct-align/2u2fA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10909/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.742798 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ucz id: 2ucz alignment found: /projects/compbio/experiments/models.97/pdb/2u/2ucz/nostruct-align/2ucz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2u/2ucz/nostruct-align/2ucz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2u/2ucz/nostruct-align/2ucz.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29617/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.947876 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2udpA id: 2udpA alignment found: /projects/compbio/experiments/models.97/pdb/2u/2udpA/nostruct-align/2udpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2u/2udpA/nostruct-align/2udpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2u/2udpA/nostruct-align/2udpA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18358/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.704956 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2utgA id: 2utgA alignment found: /projects/compbio/experiments/models.97/pdb/2u/2utgA/nostruct-align/2utgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2u/2utgA/nostruct-align/2utgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2u/2utgA/nostruct-align/2utgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27378/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.410889 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2vgh id: 2vgh alignment found: /projects/compbio/experiments/models.97/pdb/2v/2vgh/nostruct-align/2vgh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2v/2vgh/nostruct-align/2vgh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2v/2vgh/nostruct-align/2vgh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17242/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.544922 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2vhbA id: 2vhbA alignment found: /projects/compbio/experiments/models.97/pdb/2v/2vhbA/nostruct-align/2vhbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2v/2vhbA/nostruct-align/2vhbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2v/2vhbA/nostruct-align/2vhbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31542/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.189819 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2vhbB id: 2vhbB alignment found: /projects/compbio/experiments/models.97/pdb/2v/2vhbB/nostruct-align/2vhbB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2v/2vhbB/nostruct-align/2vhbB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2v/2vhbB/nostruct-align/2vhbB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15693/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.075928 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2vik id: 2vik alignment found: /projects/compbio/experiments/models.97/pdb/2v/2vik/nostruct-align/2vik.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2v/2vik/nostruct-align/2vik.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2v/2vik/nostruct-align/2vik.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6078/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.217896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2vil id: 2vil alignment found: /projects/compbio/experiments/models.97/pdb/2v/2vil/nostruct-align/2vil.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2v/2vil/nostruct-align/2vil.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2v/2vil/nostruct-align/2vil.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6800/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.481934 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2viuA id: 2viuA alignment found: /projects/compbio/experiments/models.97/pdb/2v/2viuA/nostruct-align/2viuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2v/2viuA/nostruct-align/2viuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2v/2viuA/nostruct-align/2viuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6554/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.588867 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2viuB id: 2viuB alignment found: /projects/compbio/experiments/models.97/pdb/2v/2viuB/nostruct-align/2viuB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2v/2viuB/nostruct-align/2viuB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2v/2viuB/nostruct-align/2viuB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6387/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.219971 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2vsgA id: 2vsgA alignment found: /projects/compbio/experiments/models.97/pdb/2v/2vsgA/nostruct-align/2vsgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2v/2vsgA/nostruct-align/2vsgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2v/2vsgA/nostruct-align/2vsgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24245/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.927979 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2wrpR id: 2wrpR alignment found: /projects/compbio/experiments/models.97/pdb/2w/2wrpR/nostruct-align/2wrpR.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2w/2wrpR/nostruct-align/2wrpR.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2w/2wrpR/nostruct-align/2wrpR.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4138/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.558838 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2xat id: 2xat alignment found: /projects/compbio/experiments/models.97/pdb/2x/2xat/nostruct-align/2xat.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2x/2xat/nostruct-align/2xat.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2x/2xat/nostruct-align/2xat.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14857/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.892944 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2xis id: 2xis alignment found: /projects/compbio/experiments/models.97/pdb/2x/2xis/nostruct-align/2xis.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2x/2xis/nostruct-align/2xis.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2x/2xis/nostruct-align/2xis.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22262/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.956909 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2yhx id: 2yhx alignment found: /projects/compbio/experiments/models.97/pdb/2y/2yhx/nostruct-align/2yhx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2y/2yhx/nostruct-align/2yhx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2y/2yhx/nostruct-align/2yhx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18983/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.559937 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2yhx_1 id: 2yhx_1 alignment found: /projects/compbio4/experiments/models.97/domains/2y/2yhx_1/nostruct-align/2yhx_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2y/2yhx_1/nostruct-align/2yhx_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2y/2yhx_1/nostruct-align/2yhx_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11151/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.393921 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2yhx_2 id: 2yhx_2 alignment found: /projects/compbio4/experiments/models.97/domains/2y/2yhx_2/nostruct-align/2yhx_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/2y/2yhx_2/nostruct-align/2yhx_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/2y/2yhx_2/nostruct-align/2yhx_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24027/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.411865 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2ztaA id: 2ztaA alignment found: /projects/compbio/experiments/models.97/pdb/2z/2ztaA/nostruct-align/2ztaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2z/2ztaA/nostruct-align/2ztaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2z/2ztaA/nostruct-align/2ztaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14124/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.724976 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 32c2A id: 32c2A alignment found: /projects/compbio/experiments/models.97/pdb/32/32c2A/nostruct-align/32c2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/32/32c2A/nostruct-align/32c2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/32/32c2A/nostruct-align/32c2A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26285/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.322876 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 351c id: 351c alignment found: /projects/compbio/experiments/models.97/pdb/35/351c/nostruct-align/351c.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/35/351c/nostruct-align/351c.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/35/351c/nostruct-align/351c.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16396/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.358887 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3adk id: 3adk alignment found: /projects/compbio/experiments/models.97/pdb/3a/3adk/nostruct-align/3adk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3a/3adk/nostruct-align/3adk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3a/3adk/nostruct-align/3adk.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31837/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.846924 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3aig id: 3aig alignment found: /projects/compbio/experiments/models.97/pdb/3a/3aig/nostruct-align/3aig.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3a/3aig/nostruct-align/3aig.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3a/3aig/nostruct-align/3aig.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-8238/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.532837 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3bamB id: 3bamB alignment found: /projects/compbio/experiments/models.97/pdb/3b/3bamB/nostruct-align/3bamB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3b/3bamB/nostruct-align/3bamB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3b/3bamB/nostruct-align/3bamB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-13192/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.512939 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3bbg id: 3bbg alignment found: /projects/compbio/experiments/models.97/pdb/3b/3bbg/nostruct-align/3bbg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3b/3bbg/nostruct-align/3bbg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3b/3bbg/nostruct-align/3bbg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32117/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.484863 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3bct id: 3bct alignment found: /projects/compbio/experiments/models.97/pdb/3b/3bct/nostruct-align/3bct.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3b/3bct/nostruct-align/3bct.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3b/3bct/nostruct-align/3bct.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25595/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.400879 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3c2c id: 3c2c alignment found: /projects/compbio/experiments/models.97/pdb/3c/3c2c/nostruct-align/3c2c.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3c2c/nostruct-align/3c2c.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3c/3c2c/nostruct-align/3c2c.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28091/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.692871 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3cbh id: 3cbh alignment found: /projects/compbio/experiments/models.97/pdb/3c/3cbh/nostruct-align/3cbh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3cbh/nostruct-align/3cbh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3c/3cbh/nostruct-align/3cbh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8956/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.343872 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3cd4 id: 3cd4 alignment found: /projects/compbio/experiments/models.97/pdb/3c/3cd4/nostruct-align/3cd4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3cd4/nostruct-align/3cd4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3c/3cd4/nostruct-align/3cd4.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21526/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.492920 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3cd4_1 id: 3cd4_1 alignment found: /projects/compbio4/experiments/models.97/domains/3c/3cd4_1/nostruct-align/3cd4_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/3c/3cd4_1/nostruct-align/3cd4_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/3c/3cd4_1/nostruct-align/3cd4_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7271/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.860962 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3cd4_2 id: 3cd4_2 alignment found: /projects/compbio4/experiments/models.97/domains/3c/3cd4_2/nostruct-align/3cd4_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/3c/3cd4_2/nostruct-align/3cd4_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/3c/3cd4_2/nostruct-align/3cd4_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24167/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.133911 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3chbD id: 3chbD alignment found: /projects/compbio/experiments/models.97/pdb/3c/3chbD/nostruct-align/3chbD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3chbD/nostruct-align/3chbD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3c/3chbD/nostruct-align/3chbD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19815/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.498901 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3chy id: 3chy alignment found: /projects/compbio/experiments/models.97/pdb/3c/3chy/nostruct-align/3chy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3chy/nostruct-align/3chy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3c/3chy/nostruct-align/3chy.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13587/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.406982 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3cla id: 3cla alignment found: /projects/compbio/experiments/models.97/pdb/3c/3cla/nostruct-align/3cla.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3cla/nostruct-align/3cla.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3c/3cla/nostruct-align/3cla.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31845/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.303955 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3cms id: 3cms alignment found: /projects/compbio/experiments/models.97/pdb/3c/3cms/nostruct-align/3cms.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3cms/nostruct-align/3cms.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3c/3cms/nostruct-align/3cms.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32532/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.513916 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3cox id: 3cox alignment found: /projects/compbio/experiments/models.97/pdb/3c/3cox/nostruct-align/3cox.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3cox/nostruct-align/3cox.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3c/3cox/nostruct-align/3cox.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3805/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.539917 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3crd id: 3crd alignment found: /projects/compbio/experiments/models.97/pdb/3c/3crd/nostruct-align/3crd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3crd/nostruct-align/3crd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3c/3crd/nostruct-align/3crd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30513/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.186890 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3crxA id: 3crxA alignment found: /projects/compbio/experiments/models.97/pdb/3c/3crxA/nostruct-align/3crxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3crxA/nostruct-align/3crxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3c/3crxA/nostruct-align/3crxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30898/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.702881 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3csuA id: 3csuA alignment found: /projects/compbio/experiments/models.97/pdb/3c/3csuA/nostruct-align/3csuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3csuA/nostruct-align/3csuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3c/3csuA/nostruct-align/3csuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20444/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.500977 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3cyr id: 3cyr alignment found: /projects/compbio/experiments/models.97/pdb/3c/3cyr/nostruct-align/3cyr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3cyr/nostruct-align/3cyr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3c/3cyr/nostruct-align/3cyr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9386/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.156860 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3daaA id: 3daaA alignment found: /projects/compbio/experiments/models.97/pdb/3d/3daaA/nostruct-align/3daaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3d/3daaA/nostruct-align/3daaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3d/3daaA/nostruct-align/3daaA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27942/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.690918 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3dapA id: 3dapA alignment found: /projects/compbio/experiments/models.97/pdb/3d/3dapA/nostruct-align/3dapA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3d/3dapA/nostruct-align/3dapA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3d/3dapA/nostruct-align/3dapA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10578/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.090942 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3dfr id: 3dfr alignment found: /projects/compbio/experiments/models.97/pdb/3d/3dfr/nostruct-align/3dfr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3d/3dfr/nostruct-align/3dfr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3d/3dfr/nostruct-align/3dfr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22299/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.401855 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3dni id: 3dni alignment found: /projects/compbio/experiments/models.97/pdb/3d/3dni/nostruct-align/3dni.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3d/3dni/nostruct-align/3dni.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3d/3dni/nostruct-align/3dni.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1149/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.517944 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3dpa_1 id: 3dpa_1 alignment found: /projects/compbio4/experiments/models.97/domains/3d/3dpa_1/nostruct-align/3dpa_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/3d/3dpa_1/nostruct-align/3dpa_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/3d/3dpa_1/nostruct-align/3dpa_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25792/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.452881 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3dpa_2 id: 3dpa_2 alignment found: /projects/compbio4/experiments/models.97/domains/3d/3dpa_2/nostruct-align/3dpa_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/3d/3dpa_2/nostruct-align/3dpa_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/3d/3dpa_2/nostruct-align/3dpa_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6883/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.004883 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3ebx id: 3ebx alignment found: /projects/compbio/experiments/models.97/pdb/3e/3ebx/nostruct-align/3ebx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3e/3ebx/nostruct-align/3ebx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3e/3ebx/nostruct-align/3ebx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6852/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.633911 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3egf id: 3egf alignment found: /projects/compbio/experiments/models.97/pdb/3e/3egf/nostruct-align/3egf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3e/3egf/nostruct-align/3egf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3e/3egf/nostruct-align/3egf.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30387/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.275879 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3eipA id: 3eipA alignment found: /projects/compbio/experiments/models.97/pdb/3e/3eipA/nostruct-align/3eipA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3e/3eipA/nostruct-align/3eipA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3e/3eipA/nostruct-align/3eipA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18810/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.429932 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3erdA id: 3erdA alignment found: /projects/compbio/experiments/models.97/pdb/3e/3erdA/nostruct-align/3erdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3e/3erdA/nostruct-align/3erdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3e/3erdA/nostruct-align/3erdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30061/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.112915 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3eugA id: 3eugA alignment found: /projects/compbio/experiments/models.97/pdb/3e/3eugA/nostruct-align/3eugA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3e/3eugA/nostruct-align/3eugA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3e/3eugA/nostruct-align/3eugA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17228/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.235840 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3ezmA id: 3ezmA alignment found: /projects/compbio/experiments/models.97/pdb/3e/3ezmA/nostruct-align/3ezmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3e/3ezmA/nostruct-align/3ezmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3e/3ezmA/nostruct-align/3ezmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9608/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.414917 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3fib id: 3fib alignment found: /projects/compbio/experiments/models.97/pdb/3f/3fib/nostruct-align/3fib.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3f/3fib/nostruct-align/3fib.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3f/3fib/nostruct-align/3fib.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26287/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.249878 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3gatA id: 3gatA alignment found: /projects/compbio/experiments/models.97/pdb/3g/3gatA/nostruct-align/3gatA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3g/3gatA/nostruct-align/3gatA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3g/3gatA/nostruct-align/3gatA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13424/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.144897 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3gcb id: 3gcb alignment found: /projects/compbio/experiments/models.97/pdb/3g/3gcb/nostruct-align/3gcb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3g/3gcb/nostruct-align/3gcb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3g/3gcb/nostruct-align/3gcb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22524/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.935913 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3grs id: 3grs alignment found: /projects/compbio/experiments/models.97/pdb/3g/3grs/nostruct-align/3grs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3g/3grs/nostruct-align/3grs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3g/3grs/nostruct-align/3grs.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27030/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.779907 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3hhrB id: 3hhrB alignment found: /projects/compbio/experiments/models.97/pdb/3h/3hhrB/nostruct-align/3hhrB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3h/3hhrB/nostruct-align/3hhrB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3h/3hhrB/nostruct-align/3hhrB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27875/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.445923 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3hhrB_1 id: 3hhrB_1 alignment found: /projects/compbio4/experiments/models.97/domains/3h/3hhrB_1/nostruct-align/3hhrB_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/3h/3hhrB_1/nostruct-align/3hhrB_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/3h/3hhrB_1/nostruct-align/3hhrB_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2595/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.895874 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3hhrB_2 id: 3hhrB_2 alignment found: /projects/compbio4/experiments/models.97/domains/3h/3hhrB_2/nostruct-align/3hhrB_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/3h/3hhrB_2/nostruct-align/3hhrB_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/3h/3hhrB_2/nostruct-align/3hhrB_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21085/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.159912 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3htsB id: 3htsB alignment found: /projects/compbio/experiments/models.97/pdb/3h/3htsB/nostruct-align/3htsB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3h/3htsB/nostruct-align/3htsB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3h/3htsB/nostruct-align/3htsB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19443/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.258789 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3il8 id: 3il8 alignment found: /projects/compbio/experiments/models.97/pdb/3i/3il8/nostruct-align/3il8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3i/3il8/nostruct-align/3il8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3i/3il8/nostruct-align/3il8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25115/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.089844 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3inkC id: 3inkC alignment found: /projects/compbio/experiments/models.97/pdb/3i/3inkC/nostruct-align/3inkC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3i/3inkC/nostruct-align/3inkC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3i/3inkC/nostruct-align/3inkC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1841/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.693848 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3ins_1a1 id: 3ins_1a1 alignment found: /projects/compbio4/experiments/models.97/domains/3i/3ins_1a1/nostruct-align/3ins_1a1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/3i/3ins_1a1/nostruct-align/3ins_1a1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/3i/3ins_1a1/nostruct-align/3ins_1a1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4305/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.423950 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3ladA id: 3ladA alignment found: /projects/compbio/experiments/models.97/pdb/3l/3ladA/nostruct-align/3ladA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3l/3ladA/nostruct-align/3ladA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3l/3ladA/nostruct-align/3ladA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27873/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.257935 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3lck id: 3lck alignment found: /projects/compbio/experiments/models.97/pdb/3l/3lck/nostruct-align/3lck.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3l/3lck/nostruct-align/3lck.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3l/3lck/nostruct-align/3lck.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17045/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.037964 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3ldh id: 3ldh alignment found: /projects/compbio/experiments/models.97/pdb/3l/3ldh/nostruct-align/3ldh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3l/3ldh/nostruct-align/3ldh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3l/3ldh/nostruct-align/3ldh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6247/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.547852 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3lzt id: 3lzt alignment found: /projects/compbio/experiments/models.97/pdb/3l/3lzt/nostruct-align/3lzt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3l/3lzt/nostruct-align/3lzt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3l/3lzt/nostruct-align/3lzt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23912/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.746948 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3mag id: 3mag alignment found: /projects/compbio/experiments/models.97/pdb/3m/3mag/nostruct-align/3mag.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3m/3mag/nostruct-align/3mag.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3m/3mag/nostruct-align/3mag.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9352/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.281006 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3mddA id: 3mddA alignment found: /projects/compbio/experiments/models.97/pdb/3m/3mddA/nostruct-align/3mddA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3m/3mddA/nostruct-align/3mddA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3m/3mddA/nostruct-align/3mddA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19099/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.621948 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3mdeA id: 3mdeA alignment found: /projects/compbio/experiments/models.97/pdb/3m/3mdeA/nostruct-align/3mdeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3m/3mdeA/nostruct-align/3mdeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3m/3mdeA/nostruct-align/3mdeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11778/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.797852 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3mefA id: 3mefA alignment found: /projects/compbio/experiments/models.97/pdb/3m/3mefA/nostruct-align/3mefA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3m/3mefA/nostruct-align/3mefA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3m/3mefA/nostruct-align/3mefA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26093/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.465942 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3minB id: 3minB alignment found: /projects/compbio/experiments/models.97/pdb/3m/3minB/nostruct-align/3minB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3m/3minB/nostruct-align/3minB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3m/3minB/nostruct-align/3minB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29816/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.793945 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3minC id: 3minC alignment found: /projects/compbio/experiments/models.97/pdb/3m/3minC/nostruct-align/3minC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3m/3minC/nostruct-align/3minC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3m/3minC/nostruct-align/3minC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27614/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.140869 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3monB id: 3monB alignment found: /projects/compbio/experiments/models.97/pdb/3m/3monB/nostruct-align/3monB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3m/3monB/nostruct-align/3monB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3m/3monB/nostruct-align/3monB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19462/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.470947 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3ncmA id: 3ncmA alignment found: /projects/compbio/experiments/models.97/pdb/3n/3ncmA/nostruct-align/3ncmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3n/3ncmA/nostruct-align/3ncmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3n/3ncmA/nostruct-align/3ncmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7930/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.658813 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3nll id: 3nll alignment found: /projects/compbio/experiments/models.97/pdb/3n/3nll/nostruct-align/3nll.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3n/3nll/nostruct-align/3nll.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3n/3nll/nostruct-align/3nll.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29593/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.930908 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3nn9 id: 3nn9 alignment found: /projects/compbio/experiments/models.97/pdb/3n/3nn9/nostruct-align/3nn9.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3n/3nn9/nostruct-align/3nn9.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3n/3nn9/nostruct-align/3nn9.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-18828/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.963867 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3nodB id: 3nodB alignment found: /projects/compbio/experiments/models.97/pdb/3n/3nodB/nostruct-align/3nodB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3n/3nodB/nostruct-align/3nodB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3n/3nodB/nostruct-align/3nodB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16912/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.757935 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3nul id: 3nul alignment found: /projects/compbio/experiments/models.97/pdb/3n/3nul/nostruct-align/3nul.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3n/3nul/nostruct-align/3nul.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3n/3nul/nostruct-align/3nul.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9522/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.593994 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3ovo id: 3ovo alignment found: /projects/compbio/experiments/models.97/pdb/3o/3ovo/nostruct-align/3ovo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3o/3ovo/nostruct-align/3ovo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3o/3ovo/nostruct-align/3ovo.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25993/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.713867 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3pbgA id: 3pbgA alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pbgA/nostruct-align/3pbgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pbgA/nostruct-align/3pbgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3pbgA/nostruct-align/3pbgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11642/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.077881 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3pcgA id: 3pcgA alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pcgA/nostruct-align/3pcgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pcgA/nostruct-align/3pcgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3pcgA/nostruct-align/3pcgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8937/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.279907 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3pcgM id: 3pcgM alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pcgM/nostruct-align/3pcgM.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pcgM/nostruct-align/3pcgM.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3pcgM/nostruct-align/3pcgM.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9833/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.281860 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3pchA id: 3pchA alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pchA/nostruct-align/3pchA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pchA/nostruct-align/3pchA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3pchA/nostruct-align/3pchA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26413/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.279907 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3pchM id: 3pchM alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pchM/nostruct-align/3pchM.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pchM/nostruct-align/3pchM.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3pchM/nostruct-align/3pchM.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23316/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.281860 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3pcnA id: 3pcnA alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pcnA/nostruct-align/3pcnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pcnA/nostruct-align/3pcnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3pcnA/nostruct-align/3pcnA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12790/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.501953 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3pfk id: 3pfk alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pfk/nostruct-align/3pfk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pfk/nostruct-align/3pfk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3pfk/nostruct-align/3pfk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17771/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.307861 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3pga1 id: 3pga1 alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pga1/nostruct-align/3pga1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pga1/nostruct-align/3pga1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3pga1/nostruct-align/3pga1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2577/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.245850 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3pgk id: 3pgk alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pgk/nostruct-align/3pgk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pgk/nostruct-align/3pgk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3pgk/nostruct-align/3pgk.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26874/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.493896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3pgm id: 3pgm alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pgm/nostruct-align/3pgm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pgm/nostruct-align/3pgm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3pgm/nostruct-align/3pgm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21457/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.623901 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3pmgA id: 3pmgA alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pmgA/nostruct-align/3pmgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pmgA/nostruct-align/3pmgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3pmgA/nostruct-align/3pmgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28784/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.191895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3pmgA_1 id: 3pmgA_1 alignment found: /projects/compbio4/experiments/models.97/domains/3p/3pmgA_1/nostruct-align/3pmgA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/3p/3pmgA_1/nostruct-align/3pmgA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/3p/3pmgA_1/nostruct-align/3pmgA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6975/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.927002 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3pmgA_2 id: 3pmgA_2 alignment found: /projects/compbio4/experiments/models.97/domains/3p/3pmgA_2/nostruct-align/3pmgA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/3p/3pmgA_2/nostruct-align/3pmgA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/3p/3pmgA_2/nostruct-align/3pmgA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3370/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.792847 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3pmgA_3 id: 3pmgA_3 alignment found: /projects/compbio4/experiments/models.97/domains/3p/3pmgA_3/nostruct-align/3pmgA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/3p/3pmgA_3/nostruct-align/3pmgA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/3p/3pmgA_3/nostruct-align/3pmgA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17890/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.543945 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3pmgA_4 id: 3pmgA_4 alignment found: /projects/compbio4/experiments/models.97/domains/3p/3pmgA_4/nostruct-align/3pmgA_4.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/3p/3pmgA_4/nostruct-align/3pmgA_4.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/3p/3pmgA_4/nostruct-align/3pmgA_4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7628/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.165894 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3prn id: 3prn alignment found: /projects/compbio/experiments/models.97/pdb/3p/3prn/nostruct-align/3prn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3prn/nostruct-align/3prn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3prn/nostruct-align/3prn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14564/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.594971 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3proC id: 3proC alignment found: /projects/compbio/experiments/models.97/pdb/3p/3proC/nostruct-align/3proC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3proC/nostruct-align/3proC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3proC/nostruct-align/3proC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21493/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.747925 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3proD id: 3proD alignment found: /projects/compbio/experiments/models.97/pdb/3p/3proD/nostruct-align/3proD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3proD/nostruct-align/3proD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3proD/nostruct-align/3proD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26461/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.748901 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3pte id: 3pte alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pte/nostruct-align/3pte.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pte/nostruct-align/3pte.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3pte/nostruct-align/3pte.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-53/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.461914 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3pvaA id: 3pvaA alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pvaA/nostruct-align/3pvaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pvaA/nostruct-align/3pvaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3pvaA/nostruct-align/3pvaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23482/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.206909 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3pviA id: 3pviA alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pviA/nostruct-align/3pviA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pviA/nostruct-align/3pviA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3pviA/nostruct-align/3pviA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15150/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.384888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3pyp id: 3pyp alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pyp/nostruct-align/3pyp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pyp/nostruct-align/3pyp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3p/3pyp/nostruct-align/3pyp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24413/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.818970 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3rabA id: 3rabA alignment found: /projects/compbio/experiments/models.97/pdb/3r/3rabA/nostruct-align/3rabA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3r/3rabA/nostruct-align/3rabA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3r/3rabA/nostruct-align/3rabA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20522/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.096924 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3rp2A id: 3rp2A alignment found: /projects/compbio/experiments/models.97/pdb/3r/3rp2A/nostruct-align/3rp2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3r/3rp2A/nostruct-align/3rp2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3r/3rp2A/nostruct-align/3rp2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11612/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.313965 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3rubL_1 id: 3rubL_1 alignment found: /projects/compbio4/experiments/models.97/domains/3r/3rubL_1/nostruct-align/3rubL_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/3r/3rubL_1/nostruct-align/3rubL_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/3r/3rubL_1/nostruct-align/3rubL_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26336/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.957886 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3rubL_2 id: 3rubL_2 alignment found: /projects/compbio4/experiments/models.97/domains/3r/3rubL_2/nostruct-align/3rubL_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/3r/3rubL_2/nostruct-align/3rubL_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/3r/3rubL_2/nostruct-align/3rubL_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24243/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.871948 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3rubS id: 3rubS alignment found: /projects/compbio/experiments/models.97/pdb/3r/3rubS/nostruct-align/3rubS.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3r/3rubS/nostruct-align/3rubS.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3r/3rubS/nostruct-align/3rubS.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30990/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.281860 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3sdhA id: 3sdhA alignment found: /projects/compbio/experiments/models.97/pdb/3s/3sdhA/nostruct-align/3sdhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3s/3sdhA/nostruct-align/3sdhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3s/3sdhA/nostruct-align/3sdhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14758/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.345947 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3seb id: 3seb alignment found: /projects/compbio/experiments/models.97/pdb/3s/3seb/nostruct-align/3seb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3s/3seb/nostruct-align/3seb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3s/3seb/nostruct-align/3seb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8418/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.093872 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3sil id: 3sil alignment found: /projects/compbio/experiments/models.97/pdb/3s/3sil/nostruct-align/3sil.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3s/3sil/nostruct-align/3sil.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3s/3sil/nostruct-align/3sil.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-403/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.715820 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3ssi id: 3ssi alignment found: /projects/compbio/experiments/models.97/pdb/3s/3ssi/nostruct-align/3ssi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3s/3ssi/nostruct-align/3ssi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3s/3ssi/nostruct-align/3ssi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23839/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.134888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3stdA id: 3stdA alignment found: /projects/compbio/experiments/models.97/pdb/3s/3stdA/nostruct-align/3stdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3s/3stdA/nostruct-align/3stdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3s/3stdA/nostruct-align/3stdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8443/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.124878 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3tdt id: 3tdt alignment found: /projects/compbio/experiments/models.97/pdb/3t/3tdt/nostruct-align/3tdt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3t/3tdt/nostruct-align/3tdt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3t/3tdt/nostruct-align/3tdt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1216/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.768921 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3tgf id: 3tgf alignment found: /projects/compbio/experiments/models.97/pdb/3t/3tgf/nostruct-align/3tgf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3t/3tgf/nostruct-align/3tgf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3t/3tgf/nostruct-align/3tgf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-610/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.256836 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3tgl id: 3tgl alignment found: /projects/compbio/experiments/models.97/pdb/3t/3tgl/nostruct-align/3tgl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3t/3tgl/nostruct-align/3tgl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3t/3tgl/nostruct-align/3tgl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5401/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.598877 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3thi id: 3thi alignment found: /projects/compbio/experiments/models.97/pdb/3t/3thi/nostruct-align/3thi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3t/3thi/nostruct-align/3thi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3t/3thi/nostruct-align/3thi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7797/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.250854 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3tmkA id: 3tmkA alignment found: /projects/compbio/experiments/models.97/pdb/3t/3tmkA/nostruct-align/3tmkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3t/3tmkA/nostruct-align/3tmkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3t/3tmkA/nostruct-align/3tmkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6177/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.451904 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3tss id: 3tss alignment found: /projects/compbio/experiments/models.97/pdb/3t/3tss/nostruct-align/3tss.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3t/3tss/nostruct-align/3tss.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3t/3tss/nostruct-align/3tss.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10531/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.002808 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3ullA id: 3ullA alignment found: /projects/compbio/experiments/models.97/pdb/3u/3ullA/nostruct-align/3ullA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3u/3ullA/nostruct-align/3ullA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3u/3ullA/nostruct-align/3ullA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3277/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.962891 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3vtk id: 3vtk alignment found: /projects/compbio/experiments/models.97/pdb/3v/3vtk/nostruct-align/3vtk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3v/3vtk/nostruct-align/3vtk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3v/3vtk/nostruct-align/3vtk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31776/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.085815 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3vub id: 3vub alignment found: /projects/compbio/experiments/models.97/pdb/3v/3vub/nostruct-align/3vub.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3v/3vub/nostruct-align/3vub.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3v/3vub/nostruct-align/3vub.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11967/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.226929 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 3ygsP id: 3ygsP alignment found: /projects/compbio/experiments/models.97/pdb/3y/3ygsP/nostruct-align/3ygsP.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/3y/3ygsP/nostruct-align/3ygsP.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/3y/3ygsP/nostruct-align/3ygsP.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6326/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.752930 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 451c id: 451c alignment found: /projects/compbio/experiments/models.97/pdb/45/451c/nostruct-align/451c.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/45/451c/nostruct-align/451c.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/45/451c/nostruct-align/451c.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22302/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.357910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 487dL id: 487dL alignment found: /projects/compbio/experiments/models.97/pdb/48/487dL/nostruct-align/487dL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/48/487dL/nostruct-align/487dL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/48/487dL/nostruct-align/487dL.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26551/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.810913 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 4aahA id: 4aahA alignment found: /projects/compbio/experiments/models.97/pdb/4a/4aahA/nostruct-align/4aahA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4a/4aahA/nostruct-align/4aahA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4a/4aahA/nostruct-align/4aahA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9333/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.636841 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 4bcl id: 4bcl alignment found: /projects/compbio/experiments/models.97/pdb/4b/4bcl/nostruct-align/4bcl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4b/4bcl/nostruct-align/4bcl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4b/4bcl/nostruct-align/4bcl.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18123/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.026978 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 4blmA id: 4blmA alignment found: /projects/compbio/experiments/models.97/pdb/4b/4blmA/nostruct-align/4blmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4b/4blmA/nostruct-align/4blmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4b/4blmA/nostruct-align/4blmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24857/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.961914 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 4cpaI id: 4cpaI alignment found: /projects/compbio/experiments/models.97/pdb/4c/4cpaI/nostruct-align/4cpaI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4c/4cpaI/nostruct-align/4cpaI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4c/4cpaI/nostruct-align/4cpaI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7833/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.867920 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 4crxA id: 4crxA alignment found: /projects/compbio/experiments/models.97/pdb/4c/4crxA/nostruct-align/4crxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4c/4crxA/nostruct-align/4crxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4c/4crxA/nostruct-align/4crxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13911/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.773926 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 4dpvZ id: 4dpvZ alignment found: /projects/compbio/experiments/models.97/pdb/4d/4dpvZ/nostruct-align/4dpvZ.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4d/4dpvZ/nostruct-align/4dpvZ.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4d/4dpvZ/nostruct-align/4dpvZ.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22980/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.588867 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 4enl id: 4enl alignment found: /projects/compbio/experiments/models.97/pdb/4e/4enl/nostruct-align/4enl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4e/4enl/nostruct-align/4enl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4e/4enl/nostruct-align/4enl.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3465/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -418.079834 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 4eugA id: 4eugA alignment found: /projects/compbio/experiments/models.97/pdb/4e/4eugA/nostruct-align/4eugA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4e/4eugA/nostruct-align/4eugA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4e/4eugA/nostruct-align/4eugA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13957/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.577881 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 4fgf id: 4fgf alignment found: /projects/compbio/experiments/models.97/pdb/4f/4fgf/nostruct-align/4fgf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4f/4fgf/nostruct-align/4fgf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4f/4fgf/nostruct-align/4fgf.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26287/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.971924 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 4fiv id: 4fiv alignment found: /projects/compbio/experiments/models.97/pdb/4f/4fiv/nostruct-align/4fiv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4f/4fiv/nostruct-align/4fiv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4f/4fiv/nostruct-align/4fiv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1002/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.882812 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 4gatA id: 4gatA alignment found: /projects/compbio/experiments/models.97/pdb/4g/4gatA/nostruct-align/4gatA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4g/4gatA/nostruct-align/4gatA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4g/4gatA/nostruct-align/4gatA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14896/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.986938 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 4gcr id: 4gcr alignment found: /projects/compbio/experiments/models.97/pdb/4g/4gcr/nostruct-align/4gcr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4g/4gcr/nostruct-align/4gcr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4g/4gcr/nostruct-align/4gcr.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20294/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.758789 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 4gcr_1 id: 4gcr_1 alignment found: /projects/compbio4/experiments/models.97/domains/4g/4gcr_1/nostruct-align/4gcr_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/4g/4gcr_1/nostruct-align/4gcr_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/4g/4gcr_1/nostruct-align/4gcr_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6141/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.195923 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 4gcr_2 id: 4gcr_2 alignment found: /projects/compbio4/experiments/models.97/domains/4g/4gcr_2/nostruct-align/4gcr_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/4g/4gcr_2/nostruct-align/4gcr_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/4g/4gcr_2/nostruct-align/4gcr_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8188/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.075928 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 4hb1 id: 4hb1 alignment found: /projects/compbio/experiments/models.97/pdb/4h/4hb1/nostruct-align/4hb1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4h/4hb1/nostruct-align/4hb1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4h/4hb1/nostruct-align/4hb1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9049/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.232910 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 4htcI id: 4htcI alignment found: /projects/compbio/experiments/models.97/pdb/4h/4htcI/nostruct-align/4htcI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4h/4htcI/nostruct-align/4htcI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4h/4htcI/nostruct-align/4htcI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12140/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.106934 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 4icb id: 4icb alignment found: /projects/compbio/experiments/models.97/pdb/4i/4icb/nostruct-align/4icb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4i/4icb/nostruct-align/4icb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4i/4icb/nostruct-align/4icb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8496/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.417969 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 4kbpA id: 4kbpA alignment found: /projects/compbio/experiments/models.97/pdb/4k/4kbpA/nostruct-align/4kbpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4k/4kbpA/nostruct-align/4kbpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4k/4kbpA/nostruct-align/4kbpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30648/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.441895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 4lbd id: 4lbd alignment found: /projects/compbio/experiments/models.97/pdb/4l/4lbd/nostruct-align/4lbd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4l/4lbd/nostruct-align/4lbd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4l/4lbd/nostruct-align/4lbd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10490/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -17.630859 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 4mbp id: 4mbp alignment found: /projects/compbio/experiments/models.97/pdb/4m/4mbp/nostruct-align/4mbp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4m/4mbp/nostruct-align/4mbp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4m/4mbp/nostruct-align/4mbp.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4528/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -19.614868 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 4mt2 id: 4mt2 alignment found: /projects/compbio/experiments/models.97/pdb/4m/4mt2/nostruct-align/4mt2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4m/4mt2/nostruct-align/4mt2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4m/4mt2/nostruct-align/4mt2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28810/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.299927 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 4pah id: 4pah alignment found: /projects/compbio/experiments/models.97/pdb/4p/4pah/nostruct-align/4pah.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4p/4pah/nostruct-align/4pah.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4p/4pah/nostruct-align/4pah.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4076/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.652954 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 4pgaA id: 4pgaA alignment found: /projects/compbio/experiments/models.97/pdb/4p/4pgaA/nostruct-align/4pgaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4p/4pgaA/nostruct-align/4pgaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4p/4pgaA/nostruct-align/4pgaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21357/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.225952 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 4rhv4 id: 4rhv4 alignment found: /projects/compbio/experiments/models.97/pdb/4r/4rhv4/nostruct-align/4rhv4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4r/4rhv4/nostruct-align/4rhv4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4r/4rhv4/nostruct-align/4rhv4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7535/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.337891 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 4rnpA id: 4rnpA alignment found: /projects/compbio/experiments/models.97/pdb/4r/4rnpA/nostruct-align/4rnpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4r/4rnpA/nostruct-align/4rnpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4r/4rnpA/nostruct-align/4rnpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1867/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.035889 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 4sgbI id: 4sgbI alignment found: /projects/compbio/experiments/models.97/pdb/4s/4sgbI/nostruct-align/4sgbI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4s/4sgbI/nostruct-align/4sgbI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4s/4sgbI/nostruct-align/4sgbI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20521/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.127930 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 4sli id: 4sli alignment found: /projects/compbio/experiments/models.97/pdb/4s/4sli/nostruct-align/4sli.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4s/4sli/nostruct-align/4sli.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4s/4sli/nostruct-align/4sli.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9334/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.580933 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 4tgf id: 4tgf alignment found: /projects/compbio/experiments/models.97/pdb/4t/4tgf/nostruct-align/4tgf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4t/4tgf/nostruct-align/4tgf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4t/4tgf/nostruct-align/4tgf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11657/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.256836 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 4tsvA id: 4tsvA alignment found: /projects/compbio/experiments/models.97/pdb/4t/4tsvA/nostruct-align/4tsvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4t/4tsvA/nostruct-align/4tsvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4t/4tsvA/nostruct-align/4tsvA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7438/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.022949 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 4uagA id: 4uagA alignment found: /projects/compbio/experiments/models.97/pdb/4u/4uagA/nostruct-align/4uagA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4u/4uagA/nostruct-align/4uagA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4u/4uagA/nostruct-align/4uagA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17589/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.935913 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 4ubpA id: 4ubpA alignment found: /projects/compbio/experiments/models.97/pdb/4u/4ubpA/nostruct-align/4ubpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4u/4ubpA/nostruct-align/4ubpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4u/4ubpA/nostruct-align/4ubpA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32680/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.792969 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 4ubpB id: 4ubpB alignment found: /projects/compbio/experiments/models.97/pdb/4u/4ubpB/nostruct-align/4ubpB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4u/4ubpB/nostruct-align/4ubpB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4u/4ubpB/nostruct-align/4ubpB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19333/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.633911 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 4ubpC id: 4ubpC alignment found: /projects/compbio/experiments/models.97/pdb/4u/4ubpC/nostruct-align/4ubpC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4u/4ubpC/nostruct-align/4ubpC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4u/4ubpC/nostruct-align/4ubpC.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22516/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.868896 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 4ull id: 4ull alignment found: /projects/compbio/experiments/models.97/pdb/4u/4ull/nostruct-align/4ull.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4u/4ull/nostruct-align/4ull.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4u/4ull/nostruct-align/4ull.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20107/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.998901 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 4xis id: 4xis alignment found: /projects/compbio/experiments/models.97/pdb/4x/4xis/nostruct-align/4xis.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/4x/4xis/nostruct-align/4xis.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/4x/4xis/nostruct-align/4xis.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23509/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.270874 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 5csmA id: 5csmA alignment found: /projects/compbio/experiments/models.97/pdb/5c/5csmA/nostruct-align/5csmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5c/5csmA/nostruct-align/5csmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5c/5csmA/nostruct-align/5csmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8053/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.598877 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 5cytR id: 5cytR alignment found: /projects/compbio/experiments/models.97/pdb/5c/5cytR/nostruct-align/5cytR.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5c/5cytR/nostruct-align/5cytR.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5c/5cytR/nostruct-align/5cytR.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10859/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.248901 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 5eat id: 5eat alignment found: /projects/compbio/experiments/models.97/pdb/5e/5eat/nostruct-align/5eat.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5e/5eat/nostruct-align/5eat.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5e/5eat/nostruct-align/5eat.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29099/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.389893 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 5eau id: 5eau alignment found: /projects/compbio/experiments/models.97/pdb/5e/5eau/nostruct-align/5eau.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5e/5eau/nostruct-align/5eau.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5e/5eau/nostruct-align/5eau.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24910/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.286865 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 5fbpA id: 5fbpA alignment found: /projects/compbio/experiments/models.97/pdb/5f/5fbpA/nostruct-align/5fbpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5f/5fbpA/nostruct-align/5fbpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5f/5fbpA/nostruct-align/5fbpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10638/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.916870 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 5hpgA id: 5hpgA alignment found: /projects/compbio/experiments/models.97/pdb/5h/5hpgA/nostruct-align/5hpgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5h/5hpgA/nostruct-align/5hpgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5h/5hpgA/nostruct-align/5hpgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4936/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.959839 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 5icb id: 5icb alignment found: /projects/compbio/experiments/models.97/pdb/5i/5icb/nostruct-align/5icb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5i/5icb/nostruct-align/5icb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5i/5icb/nostruct-align/5icb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21580/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.746948 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 5nn9 id: 5nn9 alignment found: /projects/compbio/experiments/models.97/pdb/5n/5nn9/nostruct-align/5nn9.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5n/5nn9/nostruct-align/5nn9.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5n/5nn9/nostruct-align/5nn9.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29100/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.833862 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 5nul id: 5nul alignment found: /projects/compbio/experiments/models.97/pdb/5n/5nul/nostruct-align/5nul.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5n/5nul/nostruct-align/5nul.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5n/5nul/nostruct-align/5nul.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23524/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.316895 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 5p21 id: 5p21 alignment found: /projects/compbio/experiments/models.97/pdb/5p/5p21/nostruct-align/5p21.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5p/5p21/nostruct-align/5p21.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5p/5p21/nostruct-align/5p21.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2410/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.973999 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 5pal id: 5pal alignment found: /projects/compbio/experiments/models.97/pdb/5p/5pal/nostruct-align/5pal.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5p/5pal/nostruct-align/5pal.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5p/5pal/nostruct-align/5pal.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21172/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.883911 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 5pti id: 5pti alignment found: /projects/compbio/experiments/models.97/pdb/5p/5pti/nostruct-align/5pti.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5p/5pti/nostruct-align/5pti.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5p/5pti/nostruct-align/5pti.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19529/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.864868 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 5ptp id: 5ptp alignment found: /projects/compbio/experiments/models.97/pdb/5p/5ptp/nostruct-align/5ptp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5p/5ptp/nostruct-align/5ptp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5p/5ptp/nostruct-align/5ptp.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-475/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.581787 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 5rubA id: 5rubA alignment found: /projects/compbio/experiments/models.97/pdb/5r/5rubA/nostruct-align/5rubA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5r/5rubA/nostruct-align/5rubA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5r/5rubA/nostruct-align/5rubA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12707/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.455933 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 5rubA_1 id: 5rubA_1 alignment found: /projects/compbio4/experiments/models.97/domains/5r/5rubA_1/nostruct-align/5rubA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/5r/5rubA_1/nostruct-align/5rubA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/5r/5rubA_1/nostruct-align/5rubA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4716/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.302856 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 5rubA_2 id: 5rubA_2 alignment found: /projects/compbio4/experiments/models.97/domains/5r/5rubA_2/nostruct-align/5rubA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/5r/5rubA_2/nostruct-align/5rubA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/5r/5rubA_2/nostruct-align/5rubA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-433/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.203979 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 5tmp id: 5tmp alignment found: /projects/compbio/experiments/models.97/pdb/5t/5tmp/nostruct-align/5tmp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5t/5tmp/nostruct-align/5tmp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5t/5tmp/nostruct-align/5tmp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22814/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.602905 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 5tmpA id: 5tmpA alignment found: /projects/compbio/experiments/models.97/pdb/5t/5tmpA/nostruct-align/5tmpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5t/5tmpA/nostruct-align/5tmpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5t/5tmpA/nostruct-align/5tmpA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28047/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.185791 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 5ukdA id: 5ukdA alignment found: /projects/compbio/experiments/models.97/pdb/5u/5ukdA/nostruct-align/5ukdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5u/5ukdA/nostruct-align/5ukdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5u/5ukdA/nostruct-align/5ukdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18451/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.281860 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 5znf id: 5znf alignment found: /projects/compbio/experiments/models.97/pdb/5z/5znf/nostruct-align/5znf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/5z/5znf/nostruct-align/5znf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/5z/5znf/nostruct-align/5znf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5699/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.244019 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 6cel id: 6cel alignment found: /projects/compbio/experiments/models.97/pdb/6c/6cel/nostruct-align/6cel.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/6c/6cel/nostruct-align/6cel.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/6c/6cel/nostruct-align/6cel.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4068/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.653931 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 6gsvA id: 6gsvA alignment found: /projects/compbio/experiments/models.97/pdb/6g/6gsvA/nostruct-align/6gsvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/6g/6gsvA/nostruct-align/6gsvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/6g/6gsvA/nostruct-align/6gsvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24489/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.686890 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 6mhtA id: 6mhtA alignment found: /projects/compbio/experiments/models.97/pdb/6m/6mhtA/nostruct-align/6mhtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/6m/6mhtA/nostruct-align/6mhtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/6m/6mhtA/nostruct-align/6mhtA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1225/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.831909 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 6paxA id: 6paxA alignment found: /projects/compbio/experiments/models.97/pdb/6p/6paxA/nostruct-align/6paxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/6p/6paxA/nostruct-align/6paxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/6p/6paxA/nostruct-align/6paxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22036/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.543945 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 6pfkA id: 6pfkA alignment found: /projects/compbio/experiments/models.97/pdb/6p/6pfkA/nostruct-align/6pfkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/6p/6pfkA/nostruct-align/6pfkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/6p/6pfkA/nostruct-align/6pfkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26497/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.379883 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 6prcC id: 6prcC alignment found: /projects/compbio/experiments/models.97/pdb/6p/6prcC/nostruct-align/6prcC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/6p/6prcC/nostruct-align/6prcC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/6p/6prcC/nostruct-align/6prcC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22985/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.392944 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 6prcH id: 6prcH alignment found: /projects/compbio/experiments/models.97/pdb/6p/6prcH/nostruct-align/6prcH.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/6p/6prcH/nostruct-align/6prcH.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/6p/6prcH/nostruct-align/6prcH.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13865/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.430908 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 6prcL id: 6prcL alignment found: /projects/compbio/experiments/models.97/pdb/6p/6prcL/nostruct-align/6prcL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/6p/6prcL/nostruct-align/6prcL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/6p/6prcL/nostruct-align/6prcL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7305/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.165894 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 6prcM id: 6prcM alignment found: /projects/compbio/experiments/models.97/pdb/6p/6prcM/nostruct-align/6prcM.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/6p/6prcM/nostruct-align/6prcM.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/6p/6prcM/nostruct-align/6prcM.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22971/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.028931 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 6rlxA id: 6rlxA alignment found: /projects/compbio/experiments/models.97/pdb/6r/6rlxA/nostruct-align/6rlxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/6r/6rlxA/nostruct-align/6rlxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/6r/6rlxA/nostruct-align/6rlxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6528/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.500977 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 6rlxB id: 6rlxB alignment found: /projects/compbio/experiments/models.97/pdb/6r/6rlxB/nostruct-align/6rlxB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/6r/6rlxB/nostruct-align/6rlxB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/6r/6rlxB/nostruct-align/6rlxB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1664/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.508911 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 6rlx_1a1 id: 6rlx_1a1 alignment found: /projects/compbio4/experiments/models.97/domains/6r/6rlx_1a1/nostruct-align/6rlx_1a1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/6r/6rlx_1a1/nostruct-align/6rlx_1a1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/6r/6rlx_1a1/nostruct-align/6rlx_1a1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11290/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.487915 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 6rxn id: 6rxn alignment found: /projects/compbio/experiments/models.97/pdb/6r/6rxn/nostruct-align/6rxn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/6r/6rxn/nostruct-align/6rxn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/6r/6rxn/nostruct-align/6rxn.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11148/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.384888 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 7a3hA id: 7a3hA alignment found: /projects/compbio/experiments/models.97/pdb/7a/7a3hA/nostruct-align/7a3hA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/7a/7a3hA/nostruct-align/7a3hA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/7a/7a3hA/nostruct-align/7a3hA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16156/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.010864 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 7aatA id: 7aatA alignment found: /projects/compbio/experiments/models.97/pdb/7a/7aatA/nostruct-align/7aatA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/7a/7aatA/nostruct-align/7aatA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/7a/7aatA/nostruct-align/7aatA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16864/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.093872 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 7ahlA id: 7ahlA alignment found: /projects/compbio/experiments/models.97/pdb/7a/7ahlA/nostruct-align/7ahlA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/7a/7ahlA/nostruct-align/7ahlA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/7a/7ahlA/nostruct-align/7ahlA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11378/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.532959 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 7apiB id: 7apiB alignment found: /projects/compbio/experiments/models.97/pdb/7a/7apiB/nostruct-align/7apiB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/7a/7apiB/nostruct-align/7apiB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/7a/7apiB/nostruct-align/7apiB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15403/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.361938 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 7at1B id: 7at1B alignment found: /projects/compbio/experiments/models.97/pdb/7a/7at1B/nostruct-align/7at1B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/7a/7at1B/nostruct-align/7at1B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/7a/7at1B/nostruct-align/7at1B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20845/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.770874 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 7atjA id: 7atjA alignment found: /projects/compbio/experiments/models.97/pdb/7a/7atjA/nostruct-align/7atjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/7a/7atjA/nostruct-align/7atjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/7a/7atjA/nostruct-align/7atjA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8088/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.722900 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 7fd1 id: 7fd1 alignment found: /projects/compbio/experiments/models.97/pdb/7f/7fd1/nostruct-align/7fd1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/7f/7fd1/nostruct-align/7fd1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/7f/7fd1/nostruct-align/7fd1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30170/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.200928 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 7fd1A id: 7fd1A alignment found: /projects/compbio/experiments/models.97/pdb/7f/7fd1A/nostruct-align/7fd1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/7f/7fd1A/nostruct-align/7fd1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/7f/7fd1A/nostruct-align/7fd1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17438/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.356934 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 7icd id: 7icd alignment found: /projects/compbio/experiments/models.97/pdb/7i/7icd/nostruct-align/7icd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/7i/7icd/nostruct-align/7icd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/7i/7icd/nostruct-align/7icd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9704/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.845825 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 7odcA id: 7odcA alignment found: /projects/compbio/experiments/models.97/pdb/7o/7odcA/nostruct-align/7odcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/7o/7odcA/nostruct-align/7odcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/7o/7odcA/nostruct-align/7odcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14453/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.369873 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 7rsa id: 7rsa alignment found: /projects/compbio/experiments/models.97/pdb/7r/7rsa/nostruct-align/7rsa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/7r/7rsa/nostruct-align/7rsa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/7r/7rsa/nostruct-align/7rsa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7142/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.060913 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 7taa id: 7taa alignment found: /projects/compbio/experiments/models.97/pdb/7t/7taa/nostruct-align/7taa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/7t/7taa/nostruct-align/7taa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/7t/7taa/nostruct-align/7taa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17114/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.021973 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 8abp id: 8abp alignment found: /projects/compbio/experiments/models.97/pdb/8a/8abp/nostruct-align/8abp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/8a/8abp/nostruct-align/8abp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/8a/8abp/nostruct-align/8abp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5394/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.464966 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 8acn id: 8acn alignment found: /projects/compbio/experiments/models.97/pdb/8a/8acn/nostruct-align/8acn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/8a/8acn/nostruct-align/8acn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/8a/8acn/nostruct-align/8acn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31757/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.888916 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 8atcB id: 8atcB alignment found: /projects/compbio/experiments/models.97/pdb/8a/8atcB/nostruct-align/8atcB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/8a/8atcB/nostruct-align/8atcB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/8a/8atcB/nostruct-align/8atcB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24368/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.814819 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 8dfr id: 8dfr alignment found: /projects/compbio/experiments/models.97/pdb/8d/8dfr/nostruct-align/8dfr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/8d/8dfr/nostruct-align/8dfr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/8d/8dfr/nostruct-align/8dfr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14801/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.997925 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 8fabA id: 8fabA alignment found: /projects/compbio/experiments/models.97/pdb/8f/8fabA/nostruct-align/8fabA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/8f/8fabA/nostruct-align/8fabA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/8f/8fabA/nostruct-align/8fabA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21317/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.900879 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 8fabB id: 8fabB alignment found: /projects/compbio/experiments/models.97/pdb/8f/8fabB/nostruct-align/8fabB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/8f/8fabB/nostruct-align/8fabB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/8f/8fabB/nostruct-align/8fabB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23390/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.007935 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 8kme2 id: 8kme2 alignment found: /projects/compbio/experiments/models.97/pdb/8k/8kme2/nostruct-align/8kme2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/8k/8kme2/nostruct-align/8kme2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/8k/8kme2/nostruct-align/8kme2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29094/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.914917 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 8ohm id: 8ohm alignment found: /projects/compbio/experiments/models.97/pdb/8o/8ohm/nostruct-align/8ohm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/8o/8ohm/nostruct-align/8ohm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/8o/8ohm/nostruct-align/8ohm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30068/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.061890 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 8prkA id: 8prkA alignment found: /projects/compbio/experiments/models.97/pdb/8p/8prkA/nostruct-align/8prkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/8p/8prkA/nostruct-align/8prkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/8p/8prkA/nostruct-align/8prkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18738/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.401855 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 8prkB id: 8prkB alignment found: /projects/compbio/experiments/models.97/pdb/8p/8prkB/nostruct-align/8prkB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/8p/8prkB/nostruct-align/8prkB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/8p/8prkB/nostruct-align/8prkB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-28024/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.369873 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 8rucI id: 8rucI alignment found: /projects/compbio/experiments/models.97/pdb/8r/8rucI/nostruct-align/8rucI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/8r/8rucI/nostruct-align/8rucI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/8r/8rucI/nostruct-align/8rucI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15852/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.329956 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 8rxnA id: 8rxnA alignment found: /projects/compbio/experiments/models.97/pdb/8r/8rxnA/nostruct-align/8rxnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/8r/8rxnA/nostruct-align/8rxnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/8r/8rxnA/nostruct-align/8rxnA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7219/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.514893 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 8tlnE id: 8tlnE alignment found: /projects/compbio/experiments/models.97/pdb/8t/8tlnE/nostruct-align/8tlnE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/8t/8tlnE/nostruct-align/8tlnE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/8t/8tlnE/nostruct-align/8tlnE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22898/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.891846 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 9api_1a1 id: 9api_1a1 alignment found: /projects/compbio4/experiments/models.97/domains/9a/9api_1a1/nostruct-align/9api_1a1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/9a/9api_1a1/nostruct-align/9api_1a1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/9a/9api_1a1/nostruct-align/9api_1a1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19423/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.162842 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 9rnt id: 9rnt alignment found: /projects/compbio/experiments/models.97/pdb/9r/9rnt/nostruct-align/9rnt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/9r/9rnt/nostruct-align/9rnt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/9r/9rnt/nostruct-align/9rnt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31867/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.265869 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 9wgaA id: 9wgaA alignment found: /projects/compbio/experiments/models.97/pdb/9w/9wgaA/nostruct-align/9wgaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/9w/9wgaA/nostruct-align/9wgaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/9w/9wgaA/nostruct-align/9wgaA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22801/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.514893 Database has 1 sequences with 431 residues. entering get_template_model_for_db_search: template_id: 2oneA id: 2oneA alignment found: /projects/compbio/experiments/models.97/pdb/2o/2oneA/nostruct-align/2oneA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2oneA/nostruct-align/2oneA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/2o/2oneA/nostruct-align/2oneA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-25134/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -416.586914 Database has 1 sequences with 431 residues.