PFRMAT SS TARGET T0111 AUTHOR 3670-4530-6947 METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 10 METHOD 7 10 METHOD 5 10 METHOD 11 3 (1 EHL2 ) METHOD The input amino acid frequencies were determined from METHOD alignment T0111.t2k.a2m.gz METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10) METHOD The weighting was determined by the posterior distribution METHOD after regularizing with /projects/compbio/lib/recode3.20comp. METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 15.5258 METHOD MODEL 1 S C 0.716 K C 0.465 I E 0.407 V H 0.428 K E 0.483 I E 0.678 I E 0.752 G E 0.803 R E 0.840 E E 0.862 I E 0.794 I E 0.579 D C 0.599 S C 0.802 R C 0.952 G C 0.974 N C 0.943 P C 0.524 T E 0.864 V E 0.956 E E 0.986 A E 0.985 E E 0.981 V E 0.975 H E 0.924 L E 0.752 E C 0.741 G C 0.864 G C 0.766 F C 0.579 V C 0.475 G C 0.436 M E 0.381 A E 0.387 A C 0.401 A C 0.536 P C 0.645 S C 0.795 G C 0.810 A C 0.754 S C 0.690 T C 0.675 G C 0.749 S C 0.560 R C 0.483 E C 0.403 A E 0.396 L E 0.578 E E 0.659 L E 0.560 R C 0.654 D C 0.817 G C 0.894 D C 0.889 K C 0.900 S C 0.771 R C 0.587 F C 0.464 L C 0.457 G H 0.643 K H 0.818 G H 0.910 V H 0.947 T H 0.976 K H 0.980 A H 0.985 V H 0.981 A H 0.971 A H 0.927 V H 0.907 N H 0.837 G H 0.852 P H 0.762 I H 0.630 A H 0.495 Q H 0.599 A H 0.532 L H 0.549 I C 0.513 G C 0.936 K C 0.884 D C 0.871 A C 0.673 K C 0.686 D C 0.709 Q H 0.779 A H 0.762 G H 0.757 I H 0.743 D H 0.718 K H 0.820 I H 0.804 M H 0.791 I H 0.708 D H 0.639 L C 0.613 D C 0.844 G C 0.936 T C 0.926 E C 0.701 N C 0.612 K H 0.728 S H 0.628 K H 0.627 F H 0.579 G C 0.651 A H 0.617 N H 0.821 A H 0.927 I H 0.950 L H 0.975 A H 0.982 V H 0.989 S H 0.991 L H 0.996 A H 0.994 N H 0.995 A H 0.994 K H 0.990 A H 0.986 A H 0.975 A H 0.962 A H 0.939 A H 0.904 K H 0.846 G C 0.961 M C 0.933 P C 0.491 L H 0.968 Y H 0.990 E H 0.988 H H 0.983 I H 0.963 A H 0.917 E H 0.864 L H 0.694 N H 0.491 G C 0.786 T C 0.852 P C 0.845 G C 0.798 K C 0.644 Y E 0.476 S E 0.488 M C 0.496 P C 0.565 V C 0.505 P E 0.501 M E 0.475 M E 0.486 N E 0.415 I E 0.450 I C 0.447 N C 0.632 G C 0.728 G C 0.683 E C 0.638 H C 0.624 A C 0.680 D C 0.752 N C 0.734 N C 0.740 V C 0.723 D C 0.653 I C 0.513 Q E 0.668 E E 0.867 F E 0.889 M E 0.905 I E 0.820 Q E 0.604 P C 0.649 V C 0.891 G C 0.919 A C 0.634 K C 0.599 T C 0.494 V H 0.971 K H 0.981 E H 0.989 A H 0.984 I H 0.985 R H 0.988 M H 0.992 G H 0.991 S H 0.994 E H 0.995 V H 0.995 F H 0.993 H H 0.995 H H 0.994 L H 0.992 A H 0.992 K H 0.990 V H 0.978 L H 0.960 K H 0.931 A H 0.888 K H 0.732 G C 0.563 M C 0.856 N C 0.790 T C 0.716 A C 0.709 V C 0.690 G C 0.701 D C 0.771 E C 0.835 G C 0.866 G C 0.844 Y C 0.786 A C 0.817 P C 0.857 N C 0.830 L C 0.816 G C 0.838 S C 0.797 N H 0.565 A H 0.854 E H 0.929 A H 0.964 L H 0.986 A H 0.990 V H 0.993 I H 0.995 A H 0.994 E H 0.993 A H 0.980 V H 0.975 K H 0.964 A H 0.937 A H 0.805 G C 0.976 Y C 0.899 E C 0.870 L C 0.914 G C 0.912 K C 0.725 D E 0.678 I E 0.923 T E 0.954 L E 0.965 A E 0.952 M E 0.893 D E 0.689 C E 0.467 A H 0.403 A H 0.641 S H 0.699 E H 0.648 F H 0.605 Y H 0.551 K C 0.476 D C 0.595 G C 0.789 K C 0.681 Y C 0.534 V E 0.460 L E 0.499 A C 0.459 G C 0.542 E C 0.640 G C 0.699 N C 0.778 K C 0.646 A C 0.598 F C 0.675 T C 0.873 S H 0.906 E H 0.953 E H 0.972 F H 0.970 T H 0.980 H H 0.982 F H 0.985 L H 0.976 E H 0.981 E H 0.972 L H 0.952 T H 0.922 K H 0.838 Q H 0.690 Y C 0.908 P C 0.936 I E 0.769 V E 0.912 S E 0.876 I E 0.731 E C 0.671 D C 0.912 G C 0.909 L C 0.935 D C 0.965 E H 0.874 S H 0.899 D H 0.922 W H 0.967 D H 0.972 G H 0.976 F H 0.973 A H 0.975 Y H 0.965 Q H 0.929 T H 0.835 K H 0.776 V H 0.630 L C 0.594 G C 0.888 D C 0.814 K C 0.567 I E 0.805 Q E 0.943 L E 0.954 V E 0.903 G E 0.525 D C 0.682 D C 0.496 L E 0.542 F E 0.543 V C 0.550 T C 0.828 N C 0.911 T H 0.937 K H 0.968 I H 0.975 L H 0.984 K H 0.983 E H 0.981 G H 0.952 I H 0.901 E H 0.762 K H 0.728 G C 0.549 I C 0.747 A C 0.770 N C 0.542 S E 0.937 I E 0.974 L E 0.986 I E 0.968 K E 0.831 F E 0.593 N C 0.529 Q C 0.405 I H 0.500 G H 0.626 S H 0.726 L H 0.944 T H 0.972 E H 0.985 T H 0.984 L H 0.992 A H 0.993 A H 0.994 I H 0.992 K H 0.991 M H 0.987 A H 0.979 K H 0.957 D H 0.909 A H 0.641 G C 0.975 Y C 0.769 T E 0.724 A E 0.919 V E 0.966 I E 0.927 S E 0.844 H E 0.512 R C 0.815 S C 0.896 G C 0.969 E C 0.888 T C 0.855 E C 0.488 D H 0.516 A H 0.767 T H 0.734 I H 0.770 A H 0.780 D H 0.749 L H 0.678 A H 0.806 V H 0.775 G H 0.681 T H 0.489 A C 0.467 A H 0.648 G C 0.487 Q H 0.492 I H 0.558 K H 0.578 T H 0.470 G C 0.940 S C 0.708 M C 0.666 S C 0.802 R C 0.704 S H 0.747 D H 0.911 R H 0.943 V H 0.963 A H 0.979 K H 0.982 Y H 0.976 N H 0.977 Q H 0.984 L H 0.989 I H 0.993 R H 0.993 I H 0.995 E H 0.996 E H 0.993 A H 0.985 L H 0.941 G C 0.607 E C 0.624 K C 0.618 A C 0.494 P E 0.448 Y E 0.527 N C 0.550 G C 0.743 R C 0.662 K C 0.643 E C 0.668 I C 0.741 K C 0.813 G C 0.858 Q C 0.900 A C 0.950 END