# command:# Prefix for input files set to /projects/kestrel/users/karplus/burial/undertaker/spots/ # command:# ReadVDW initial.radii # command:Reading spots from dunbrack-925-wet-6.5.spot. Read prototypes from /projects/kestrel/users/karplus/burial/undertaker/spots/../normalize_prototypes/prototypes # command:# reading histogram from smoothed-dunbrack-925-wet-6.5.hist # command:Reading spots from dunbrack-925-dry-12.spot. Read prototypes from /projects/kestrel/users/karplus/burial/undertaker/spots/../normalize_prototypes/prototypes # command:# reading histogram from smoothed-dunbrack-925-dry-12.hist # command:Setting costs from histograms # command:# Prefix for input files set to /projects/kestrel/users/karplus/burial/undertaker/atoms-inputs/ # command:# reading dunbrack-925.atoms.gz # After reading dunbrack-925.atoms.gz have 925 chains in training database # command:# fragment library contains # type length num_fragments num_indexes_used # n-terminus 1 849 20 (100%) # n-terminus 2 842 253 (63.25%) # middle 1 205367 20 (100%) # middle 2 203845 400 (100%) # middle 3 202366 7929 (99.1125%) # middle 4 200913 88584 (55.365%) # c-terminus 1 862 20 (100%) # c-terminus 2 216 148 (37%) # ss-bonds 650 # command:# Reading rotamer library from dunbrack-925.rot # command:# Score parameters set to # sidechain_weight 1 # clash_penalty 4 nats/clash # ss_bond_bonus 50 # known_ss_bond_bonus 25 # chain_break_penalty 5 nats/Angstrom # wet_spot_weight 0.7 # dry_spot_weight 4 # command:# Prefix for input files set to # command:Created new target T0110 from ../T0110.seq # command:# Will now start reporting scores to t110-6.5w-12d.rdb # command:# created fragments for T0110 from T0110-1a3lL.0.4.index # command:# created fragments for T0110 from T0110-1a3lL.0.5.index # command:# created fragments for T0110 from T0110-1a3lL.2.5.index # command:# created fragments for T0110 from T0110-1a3lL.4.4.index # command:# created fragments for T0110 from T0110-1a3lL.6.2.index # command:# created fragments for T0110 from T0110-1a3lL.7.4.index # command:# created fragments for T0110 from T0110-1a3lL.8.5.index # command:# created fragments for T0110 from T0110-1a48.112.5.index # command:# created fragments for T0110 from T0110-1a48.113.3.index # command:# created fragments for T0110 from T0110-1a48.113.5.index # command:# created fragments for T0110 from T0110-1a48.114.5.index # command:# created fragments for T0110 from T0110-1a48.115.2.index # command:# created fragments for T0110 from T0110-1a48.116.2.index # command:# created fragments for T0110 from T0110-1a48.117.2.index # command:# created fragments for T0110 from T0110-1a48.118.1.index # command:# created fragments for T0110 from T0110-1amf.32.4.index # command:# created fragments for T0110 from T0110-1amf.33.0.index # command:# created fragments for T0110 from T0110-1amf.33.4.index # command:# created fragments for T0110 from T0110-1amf.34.2.index # command:# created fragments for T0110 from T0110-1amf.35.3.index # command:# created fragments for T0110 from T0110-1amf.36.3.index # command:# created fragments for T0110 from T0110-1amf.37.2.index # command:# created fragments for T0110 from T0110-1amf.38.0.index # command:# created fragments for T0110 from T0110-1amf.39.3.index # command:# created fragments for T0110 from T0110-1aohA.108.2.index # command:# created fragments for T0110 from T0110-1aohA.109.4.index # command:# created fragments for T0110 from T0110-1aohA.110.2.index # command:# created fragments for T0110 from T0110-1aohA.111.4.index # command:# created fragments for T0110 from T0110-1aohA.112.4.index # command:# created fragments for T0110 from T0110-1aohA.114.2.index # command:# created fragments for T0110 from T0110-1aohA.9.4.index # command:# created fragments for T0110 from T0110-1apyB.35.5.index # command:# created fragments for T0110 from T0110-1apyB.36.4.index # command:# created fragments for T0110 from T0110-1apyB.37.5.index # command:# created fragments for T0110 from T0110-1awd.100.2.index # command:# created fragments for T0110 from T0110-1awd.101.1.index # command:# created fragments for T0110 from T0110-1awd.102.3.index # command:# created fragments for T0110 from T0110-1awd.104.1.index # command:# created fragments for T0110 from T0110-1awd.106.3.index # command:# created fragments for T0110 from T0110-1awd.111.5.index # command:# created fragments for T0110 from T0110-1awd.24.4.index # command:# created fragments for T0110 from T0110-1awd.25.4.index # command:# created fragments for T0110 from T0110-1awd.26.3.index # command:# created fragments for T0110 from T0110-1awd.27.4.index # command:# created fragments for T0110 from T0110-1awd.28.3.index # command:# created fragments for T0110 from T0110-1awd.29.3.index # command:# created fragments for T0110 from T0110-1awd.30.3.index # command:# created fragments for T0110 from T0110-1awd.98.5.index # command:# created fragments for T0110 from T0110-1awd.99.3.index # command:# created fragments for T0110 from T0110-1ayfA.96.4.index # command:# created fragments for T0110 from T0110-1b3mA.1.5.index # command:# created fragments for T0110 from T0110-1babA.27.2.index # command:# created fragments for T0110 from T0110-1babB.30.5.index # command:# created fragments for T0110 from T0110-1babB.32.3.index # command:# created fragments for T0110 from T0110-1be9A.91.4.index # command:# created fragments for T0110 from T0110-1bqk.107.5.index # command:# created fragments for T0110 from T0110-1bqk.108.1.index # command:# created fragments for T0110 from T0110-1bqk.110.4.index # command:# created fragments for T0110 from T0110-1bqk.111.3.index # command:# created fragments for T0110 from T0110-1bqk.112.3.index # command:# created fragments for T0110 from T0110-1bqk.113.1.index # command:# created fragments for T0110 from T0110-1bqk.114.0.index # command:# created fragments for T0110 from T0110-1bqk.115.0.index # command:# created fragments for T0110 from T0110-1bqk.116.1.index # command:# created fragments for T0110 from T0110-1bqk.117.1.index # command:# created fragments for T0110 from T0110-1bqk.118.2.index # command:# created fragments for T0110 from T0110-1bs4A.85.4.index # command:# created fragments for T0110 from T0110-1bs4A.86.3.index # command:# created fragments for T0110 from T0110-1bs4A.87.2.index # command:# created fragments for T0110 from T0110-1bs4A.88.2.index # command:# created fragments for T0110 from T0110-1bs4A.89.0.index # command:# created fragments for T0110 from T0110-1bs4A.90.0.index # command:# created fragments for T0110 from T0110-1bs4A.91.0.index # command:# created fragments for T0110 from T0110-1bs4A.92.1.index # command:# created fragments for T0110 from T0110-1bs4A.93.2.index # command:# created fragments for T0110 from T0110-1bs4A.94.4.index # command:# created fragments for T0110 from T0110-1bs4A.95.4.index # command:# created fragments for T0110 from T0110-1bs4A.96.3.index # command:# created fragments for T0110 from T0110-1c3mA.104.5.index # command:# created fragments for T0110 from T0110-1c52.107.2.index # command:# created fragments for T0110 from T0110-1c52.108.5.index # command:# created fragments for T0110 from T0110-1c52.109.5.index # command:# created fragments for T0110 from T0110-1ccr.38.2.index # command:# created fragments for T0110 from T0110-1ccr.39.0.index # command:# created fragments for T0110 from T0110-1ccr.40.1.index # command:# created fragments for T0110 from T0110-1ccr.41.2.index # command:# created fragments for T0110 from T0110-1ccr.42.3.index # command:# created fragments for T0110 from T0110-1ccr.44.5.index # command:# created fragments for T0110 from T0110-1cg5B.31.2.index # command:# created fragments for T0110 from T0110-1cg5B.32.2.index # command:# created fragments for T0110 from T0110-1cjdA.5.5.index # command:# created fragments for T0110 from T0110-1cjdA.6.5.index # command:# created fragments for T0110 from T0110-1cjdA.7.5.index # command:# created fragments for T0110 from T0110-1cjdA.8.4.index # command:# created fragments for T0110 from T0110-1co6A.45.5.index # command:# created fragments for T0110 from T0110-1co6A.46.3.index # command:# created fragments for T0110 from T0110-1co6A.47.4.index # command:# created fragments for T0110 from T0110-1co6A.48.2.index # command:# created fragments for T0110 from T0110-1co6A.49.3.index # command:# created fragments for T0110 from T0110-1co6A.51.0.index # command:# created fragments for T0110 from T0110-1co6A.52.1.index # command:# created fragments for T0110 from T0110-1co6A.53.1.index # command:# created fragments for T0110 from T0110-1co6A.54.4.index # command:# created fragments for T0110 from T0110-1co6A.55.1.index # command:# created fragments for T0110 from T0110-1co6A.56.2.index # command:# created fragments for T0110 from T0110-1co6A.57.0.index # command:# created fragments for T0110 from T0110-1co6A.58.4.index # command:# created fragments for T0110 from T0110-1cqqA.28.2.index # command:# created fragments for T0110 from T0110-1cqqA.29.1.index # command:# created fragments for T0110 from T0110-1cqqA.30.1.index # command:# created fragments for T0110 from T0110-1cxpA.40.4.index # command:# created fragments for T0110 from T0110-1cxpA.41.0.index # command:# created fragments for T0110 from T0110-1cxpA.42.0.index # command:# created fragments for T0110 from T0110-1cxpA.43.3.index # command:# created fragments for T0110 from T0110-1cxpA.50.1.index # command:# created fragments for T0110 from T0110-1cxpA.51.3.index # command:# created fragments for T0110 from T0110-1cxpA.52.3.index # command:# created fragments for T0110 from T0110-1cxpA.53.2.index # command:# created fragments for T0110 from T0110-1cxpA.54.0.index # command:# created fragments for T0110 from T0110-1cxpA.55.0.index # command:# created fragments for T0110 from T0110-1cxpA.56.0.index # command:# created fragments for T0110 from T0110-1cxpA.57.1.index # command:# created fragments for T0110 from T0110-1cxpA.58.3.index # command:# created fragments for T0110 from T0110-1cxpA.59.3.index # command:# created fragments for T0110 from T0110-1cxpA.59.5.index # command:# created fragments for T0110 from T0110-1cxpA.60.3.index # command:# created fragments for T0110 from T0110-1cxpA.61.4.index # command:# created fragments for T0110 from T0110-1dg6A.92.5.index # command:# created fragments for T0110 from T0110-1dg6A.93.1.index # command:# created fragments for T0110 from T0110-1dg6A.94.1.index # command:# created fragments for T0110 from T0110-1dg6A.96.1.index # command:# created fragments for T0110 from T0110-1dg6A.97.4.index # command:# created fragments for T0110 from T0110-1dgwY.21.4.index # command:# created fragments for T0110 from T0110-1dgwY.22.0.index # command:# created fragments for T0110 from T0110-1dgwY.23.1.index # command:# created fragments for T0110 from T0110-1dgwY.25.5.index # command:# created fragments for T0110 from T0110-1dlfH.26.5.index # command:# created fragments for T0110 from T0110-1dlfL.0.3.index # command:# created fragments for T0110 from T0110-1dlfL.10.5.index # command:# created fragments for T0110 from T0110-1dlfL.101.4.index # command:# created fragments for T0110 from T0110-1dlfL.102.5.index # command:# created fragments for T0110 from T0110-1dlfL.12.3.index # command:# created fragments for T0110 from T0110-1dlfL.13.4.index # command:# created fragments for T0110 from T0110-1dlfL.14.4.index # command:# created fragments for T0110 from T0110-1dlfL.15.5.index # command:# created fragments for T0110 from T0110-1dlfL.17.2.index # command:# created fragments for T0110 from T0110-1dlfL.18.2.index # command:# created fragments for T0110 from T0110-1dlfL.19.3.index # command:# created fragments for T0110 from T0110-1dlfL.2.2.index # command:# created fragments for T0110 from T0110-1dlfL.20.3.index # command:# created fragments for T0110 from T0110-1dlfL.21.3.index # command:# created fragments for T0110 from T0110-1dlfL.22.4.index # command:# created fragments for T0110 from T0110-1dlfL.24.5.index # command:# created fragments for T0110 from T0110-1dlfL.25.3.index # command:# created fragments for T0110 from T0110-1dlfL.3.4.index # command:# created fragments for T0110 from T0110-1dlfL.31.4.index # command:# created fragments for T0110 from T0110-1dlfL.4.3.index # command:# created fragments for T0110 from T0110-1dlfL.5.4.index # command:# created fragments for T0110 from T0110-1dlfL.6.3.index # command:# created fragments for T0110 from T0110-1dlfL.7.3.index # command:# created fragments for T0110 from T0110-1dlfL.8.3.index # command:# created fragments for T0110 from T0110-1dlfL.9.5.index # command:# created fragments for T0110 from T0110-1dptA.60.5.index # command:# created fragments for T0110 from T0110-1dptA.61.3.index # command:# created fragments for T0110 from T0110-1dptA.62.5.index # command:# created fragments for T0110 from T0110-1dupA.39.1.index # command:# created fragments for T0110 from T0110-1dupA.40.0.index # command:# created fragments for T0110 from T0110-1dupA.41.3.index # command:# created fragments for T0110 from T0110-1dupA.42.1.index # command:# created fragments for T0110 from T0110-1dupA.43.5.index # command:# created fragments for T0110 from T0110-1efiD.31.5.index # command:# created fragments for T0110 from T0110-1efiD.33.3.index # command:# created fragments for T0110 from T0110-1efiD.34.3.index # command:# created fragments for T0110 from T0110-1efiD.35.2.index # command:# created fragments for T0110 from T0110-1efiD.36.2.index # command:# created fragments for T0110 from T0110-1elwA.43.4.index # command:# created fragments for T0110 from T0110-1elwA.44.2.index # command:# created fragments for T0110 from T0110-1elwA.45.0.index # command:# created fragments for T0110 from T0110-1elwA.46.1.index # command:# created fragments for T0110 from T0110-1elwA.46.5.index # command:# created fragments for T0110 from T0110-1elwA.48.0.index # command:# created fragments for T0110 from T0110-1elwA.49.0.index # command:# created fragments for T0110 from T0110-1elwA.50.0.index # command:# created fragments for T0110 from T0110-1elwA.51.2.index # command:# created fragments for T0110 from T0110-1elwA.52.0.index # command:# created fragments for T0110 from T0110-1elwA.53.3.index # command:# created fragments for T0110 from T0110-1elwA.54.2.index # command:# created fragments for T0110 from T0110-1elwA.54.5.index # command:# created fragments for T0110 from T0110-1ema.105.5.index # command:# created fragments for T0110 from T0110-1flmA.100.3.index # command:# created fragments for T0110 from T0110-1flmA.101.3.index # command:# created fragments for T0110 from T0110-1flmA.102.2.index # command:# created fragments for T0110 from T0110-1flmA.103.0.index # command:# created fragments for T0110 from T0110-1flmA.104.0.index # command:# created fragments for T0110 from T0110-1flmA.105.0.index # command:# created fragments for T0110 from T0110-1flmA.106.0.index # command:# created fragments for T0110 from T0110-1flmA.107.0.index # command:# created fragments for T0110 from T0110-1flmA.108.0.index # command:# created fragments for T0110 from T0110-1flmA.109.0.index # command:# created fragments for T0110 from T0110-1flmA.110.3.index # command:# created fragments for T0110 from T0110-1fna.100.0.index # command:# created fragments for T0110 from T0110-1fna.100.5.index # command:# created fragments for T0110 from T0110-1fna.101.0.index # command:# created fragments for T0110 from T0110-1fna.102.1.index # command:# created fragments for T0110 from T0110-1fna.103.2.index # command:# created fragments for T0110 from T0110-1fna.104.2.index # command:# created fragments for T0110 from T0110-1fna.105.1.index # command:# created fragments for T0110 from T0110-1fna.106.1.index # command:# created fragments for T0110 from T0110-1fna.107.1.index # command:# created fragments for T0110 from T0110-1fna.79.5.index # command:# created fragments for T0110 from T0110-1fna.80.2.index # command:# created fragments for T0110 from T0110-1fna.81.2.index # command:# created fragments for T0110 from T0110-1fna.82.2.index # command:# created fragments for T0110 from T0110-1fna.83.2.index # command:# created fragments for T0110 from T0110-1fna.84.2.index # command:# created fragments for T0110 from T0110-1fna.84.4.index # command:# created fragments for T0110 from T0110-1fna.85.2.index # command:# created fragments for T0110 from T0110-1fna.86.1.index # command:# created fragments for T0110 from T0110-1fna.87.3.index # command:# created fragments for T0110 from T0110-1fna.88.3.index # command:# created fragments for T0110 from T0110-1fna.89.2.index # command:# created fragments for T0110 from T0110-1fna.96.5.index # command:# created fragments for T0110 from T0110-1fna.97.1.index # command:# created fragments for T0110 from T0110-1fna.97.3.index # command:# created fragments for T0110 from T0110-1fna.98.1.index # command:# created fragments for T0110 from T0110-1fna.98.2.index # command:# created fragments for T0110 from T0110-1fna.99.1.index # command:# created fragments for T0110 from T0110-1fna.99.2.index # command:# created fragments for T0110 from T0110-1fnc.67.5.index # command:# created fragments for T0110 from T0110-1gai.66.5.index # command:# created fragments for T0110 from T0110-1gai.68.4.index # command:# created fragments for T0110 from T0110-1gai.69.5.index # command:# created fragments for T0110 from T0110-1gai.70.5.index # command:# created fragments for T0110 from T0110-1gai.71.4.index # command:# created fragments for T0110 from T0110-1ha1.49.4.index # command:# created fragments for T0110 from T0110-1hyp.80.5.index # command:# created fragments for T0110 from T0110-1ifc.55.2.index # command:# created fragments for T0110 from T0110-1ifc.55.3.index # command:# created fragments for T0110 from T0110-1ifc.57.3.index # command:# created fragments for T0110 from T0110-1ifc.57.4.index # command:# created fragments for T0110 from T0110-1ifc.58.2.index # command:# created fragments for T0110 from T0110-1ifc.59.1.index # command:# created fragments for T0110 from T0110-1ifc.60.1.index # command:# created fragments for T0110 from T0110-1ifc.61.1.index # command:# created fragments for T0110 from T0110-1ifc.62.1.index # command:# created fragments for T0110 from T0110-1ifc.63.1.index # command:# created fragments for T0110 from T0110-1ifc.64.1.index # command:# created fragments for T0110 from T0110-1ifc.65.2.index # command:# created fragments for T0110 from T0110-1ifc.66.3.index # command:# created fragments for T0110 from T0110-1ifc.67.4.index # command:# created fragments for T0110 from T0110-1ifc.68.2.index # command:# created fragments for T0110 from T0110-1ifc.71.0.index # command:# created fragments for T0110 from T0110-1ifc.72.1.index # command:# created fragments for T0110 from T0110-1jsf.17.5.index # command:# created fragments for T0110 from T0110-1kpeA.75.4.index # command:# created fragments for T0110 from T0110-1kpeA.76.2.index # command:# created fragments for T0110 from T0110-1kpeA.77.1.index # command:# created fragments for T0110 from T0110-1kpeA.78.2.index # command:# created fragments for T0110 from T0110-1kpeA.79.1.index # command:# created fragments for T0110 from T0110-1kpeA.80.1.index # command:# created fragments for T0110 from T0110-1kpeA.81.4.index # command:# created fragments for T0110 from T0110-1kpeA.82.5.index # command:# created fragments for T0110 from T0110-1kpeA.83.5.index # command:# created fragments for T0110 from T0110-1lmq.63.4.index # command:# created fragments for T0110 from T0110-1lmq.64.3.index # command:# created fragments for T0110 from T0110-1lmq.65.3.index # command:# created fragments for T0110 from T0110-1lmq.65.4.index # command:# created fragments for T0110 from T0110-1lmq.66.2.index # command:# created fragments for T0110 from T0110-1lmq.67.2.index # command:# created fragments for T0110 from T0110-1lmq.70.3.index # command:# created fragments for T0110 from T0110-1lmq.71.2.index # command:# created fragments for T0110 from T0110-1lmq.72.5.index # command:# created fragments for T0110 from T0110-1lmq.86.5.index # command:# created fragments for T0110 from T0110-1lmq.87.4.index # command:# created fragments for T0110 from T0110-1lmq.88.4.index # command:# created fragments for T0110 from T0110-1lmq.90.4.index # command:# created fragments for T0110 from T0110-1mrp.0.0.index # command:# created fragments for T0110 from T0110-1mrp.0.1.index # command:# created fragments for T0110 from T0110-1mrp.1.0.index # command:# created fragments for T0110 from T0110-1mrp.2.1.index # command:# created fragments for T0110 from T0110-1mrp.3.5.index # command:# created fragments for T0110 from T0110-1mrp.4.5.index # command:# created fragments for T0110 from T0110-1myt.100.4.index # command:# created fragments for T0110 from T0110-1myt.98.4.index # command:# created fragments for T0110 from T0110-1myt.99.5.index # command:# created fragments for T0110 from T0110-1nfp.10.4.index # command:# created fragments for T0110 from T0110-1nfp.11.5.index # command:# created fragments for T0110 from T0110-1nfp.12.5.index # command:# created fragments for T0110 from T0110-1nfp.13.5.index # command:# created fragments for T0110 from T0110-1noa.69.4.index # command:# created fragments for T0110 from T0110-1noa.70.1.index # command:# created fragments for T0110 from T0110-1noa.71.1.index # command:# created fragments for T0110 from T0110-1noa.72.0.index # command:# created fragments for T0110 from T0110-1noa.73.0.index # command:# created fragments for T0110 from T0110-1noa.73.4.index # command:# created fragments for T0110 from T0110-1noa.74.0.index # command:# created fragments for T0110 from T0110-1noa.74.1.index # command:# created fragments for T0110 from T0110-1noa.75.0.index # command:# created fragments for T0110 from T0110-1noa.75.1.index # command:# created fragments for T0110 from T0110-1noa.76.0.index # command:# created fragments for T0110 from T0110-1noa.76.4.index # command:# created fragments for T0110 from T0110-1noa.77.0.index # command:# created fragments for T0110 from T0110-1noa.77.3.index # command:# created fragments for T0110 from T0110-1noa.78.0.index # command:# created fragments for T0110 from T0110-1noa.78.3.index # command:# created fragments for T0110 from T0110-1noa.79.0.index # command:# created fragments for T0110 from T0110-1noa.79.2.index # command:# created fragments for T0110 from T0110-1noa.80.0.index # command:# created fragments for T0110 from T0110-1noa.81.0.index # command:# created fragments for T0110 from T0110-1noa.82.1.index # command:# created fragments for T0110 from T0110-1noa.83.3.index # command:# created fragments for T0110 from T0110-1noa.84.5.index # command:# created fragments for T0110 from T0110-1opy.72.2.index # command:# created fragments for T0110 from T0110-1opy.72.4.index # command:# created fragments for T0110 from T0110-1opy.73.1.index # command:# created fragments for T0110 from T0110-1opy.73.2.index # command:# created fragments for T0110 from T0110-1opy.74.2.index # command:# created fragments for T0110 from T0110-1opy.74.3.index # command:# created fragments for T0110 from T0110-1opy.75.2.index # command:# created fragments for T0110 from T0110-1opy.75.3.index # command:# created fragments for T0110 from T0110-1opy.76.1.index # command:# created fragments for T0110 from T0110-1opy.77.2.index # command:# created fragments for T0110 from T0110-1opy.78.5.index # command:# created fragments for T0110 from T0110-1opy.80.3.index # command:# created fragments for T0110 from T0110-1opy.81.3.index # command:# created fragments for T0110 from T0110-1opy.82.4.index # command:# created fragments for T0110 from T0110-1pgs.100.1.index # command:# created fragments for T0110 from T0110-1pgs.101.5.index # command:# created fragments for T0110 from T0110-1pgs.92.0.index # command:# created fragments for T0110 from T0110-1pgs.92.2.index # command:# created fragments for T0110 from T0110-1pgs.93.3.index # command:# created fragments for T0110 from T0110-1pgs.94.3.index # command:# created fragments for T0110 from T0110-1pgs.95.1.index # command:# created fragments for T0110 from T0110-1pgs.96.2.index # command:# created fragments for T0110 from T0110-1pgs.97.2.index # command:# created fragments for T0110 from T0110-1pgs.99.0.index # command:# created fragments for T0110 from T0110-1pne.80.4.index # command:# created fragments for T0110 from T0110-1pne.81.1.index # command:# created fragments for T0110 from T0110-1pne.82.0.index # command:# created fragments for T0110 from T0110-1pne.83.0.index # command:# created fragments for T0110 from T0110-1pne.84.0.index # command:# created fragments for T0110 from T0110-1pne.85.1.index # command:# created fragments for T0110 from T0110-1pne.86.2.index # command:# created fragments for T0110 from T0110-1pne.87.5.index # command:# created fragments for T0110 from T0110-1pne.89.3.index # command:# created fragments for T0110 from T0110-1qbzA.91.5.index # command:# created fragments for T0110 from T0110-1qd1A.90.2.index # command:# created fragments for T0110 from T0110-1qd1A.91.1.index # command:# created fragments for T0110 from T0110-1qd1A.92.3.index # command:# created fragments for T0110 from T0110-1qd1A.93.4.index # command:# created fragments for T0110 from T0110-1qd1A.94.2.index # command:# created fragments for T0110 from T0110-1qd1A.95.3.index # command:# created fragments for T0110 from T0110-1qnjA.45.2.index # command:# created fragments for T0110 from T0110-1qnjA.46.0.index # command:# created fragments for T0110 from T0110-1qnjA.47.0.index # command:# created fragments for T0110 from T0110-1qnjA.47.2.index # command:# created fragments for T0110 from T0110-1qnjA.47.5.index # command:# created fragments for T0110 from T0110-1qnjA.50.3.index # command:# created fragments for T0110 from T0110-1qqp4.68.5.index # command:# created fragments for T0110 from T0110-1qqp4.69.3.index # command:# created fragments for T0110 from T0110-1qqp4.70.2.index # command:# created fragments for T0110 from T0110-1qqp4.71.3.index # command:# created fragments for T0110 from T0110-1qqp4.72.3.index # command:# created fragments for T0110 from T0110-1qqp4.73.5.index # command:# created fragments for T0110 from T0110-1regX.106.4.index # command:# created fragments for T0110 from T0110-1rgeA.62.3.index # command:# created fragments for T0110 from T0110-1rgeA.62.4.index # command:# created fragments for T0110 from T0110-1rgeA.64.5.index # command:# created fragments for T0110 from T0110-1sacA.115.4.index # command:# created fragments for T0110 from T0110-1sacA.116.4.index # command:# created fragments for T0110 from T0110-1sgt.114.4.index # command:# created fragments for T0110 from T0110-1sgt.115.3.index # command:# created fragments for T0110 from T0110-1sgt.116.3.index # command:# created fragments for T0110 from T0110-1sgt.117.4.index # command:# created fragments for T0110 from T0110-1sgt.118.4.index # command:# created fragments for T0110 from T0110-1svpA.104.4.index # command:# created fragments for T0110 from T0110-1swuA.74.5.index # command:# created fragments for T0110 from T0110-1swuA.81.5.index # command:# created fragments for T0110 from T0110-1swuA.83.4.index # command:# created fragments for T0110 from T0110-1swuA.84.3.index # command:# created fragments for T0110 from T0110-1swuA.85.3.index # command:# created fragments for T0110 from T0110-1tca.26.2.index # command:# created fragments for T0110 from T0110-1ttbA.42.5.index # command:# created fragments for T0110 from T0110-1une.19.4.index # command:# created fragments for T0110 from T0110-1une.20.5.index # command:# created fragments for T0110 from T0110-1vfrA.117.5.index # command:# created fragments for T0110 from T0110-1vfrA.118.5.index # command:# created fragments for T0110 from T0110-1vsrA.34.5.index # command:# created fragments for T0110 from T0110-1who.73.3.index # command:# created fragments for T0110 from T0110-1who.74.4.index # command:# created fragments for T0110 from T0110-1xsoA.1.4.index # command:# created fragments for T0110 from T0110-1xsoA.2.3.index # command:# created fragments for T0110 from T0110-1xsoA.28.4.index # command:# created fragments for T0110 from T0110-1ycc.40.5.index # command:# created fragments for T0110 from T0110-1ycc.41.4.index # command:# created fragments for T0110 from T0110-1ycc.42.4.index # command:# created fragments for T0110 from T0110-1ycc.44.4.index # command:# created fragments for T0110 from T0110-1ycc.50.4.index # command:# created fragments for T0110 from T0110-1ycc.50.5.index # command:# created fragments for T0110 from T0110-1ycc.52.2.index # command:# created fragments for T0110 from T0110-1ycc.55.4.index # command:# created fragments for T0110 from T0110-256bA.103.4.index # command:# created fragments for T0110 from T0110-256bA.105.4.index # command:# created fragments for T0110 from T0110-256bA.107.3.index # command:# created fragments for T0110 from T0110-256bA.108.3.index # command:# created fragments for T0110 from T0110-256bA.109.2.index # command:# created fragments for T0110 from T0110-256bA.110.0.index # command:# created fragments for T0110 from T0110-256bA.111.1.index # command:# created fragments for T0110 from T0110-256bA.112.1.index # command:# created fragments for T0110 from T0110-256bA.113.4.index # command:# created fragments for T0110 from T0110-256bA.39.4.index # command:# created fragments for T0110 from T0110-256bA.40.2.index # command:# created fragments for T0110 from T0110-256bA.40.3.index # command:# created fragments for T0110 from T0110-256bA.41.5.index # command:# created fragments for T0110 from T0110-2chsA.102.4.index # command:# created fragments for T0110 from T0110-2chsA.103.5.index # command:# created fragments for T0110 from T0110-2chsA.104.3.index # command:# created fragments for T0110 from T0110-2chsA.106.5.index # command:# created fragments for T0110 from T0110-2cthA.105.3.index # command:# created fragments for T0110 from T0110-2cxbA.23.5.index # command:# created fragments for T0110 from T0110-2cxbA.24.1.index # command:# created fragments for T0110 from T0110-2cxbA.25.2.index # command:# created fragments for T0110 from T0110-2cxbA.26.0.index # command:# created fragments for T0110 from T0110-2cxbA.27.1.index # command:# created fragments for T0110 from T0110-2cxbA.27.5.index # command:# created fragments for T0110 from T0110-2cxbA.29.4.index # command:# created fragments for T0110 from T0110-2cxbA.39.5.index # command:# created fragments for T0110 from T0110-2cxbA.43.0.index # command:# created fragments for T0110 from T0110-2cxbA.43.1.index # command:# created fragments for T0110 from T0110-2cxbA.43.2.index # command:# created fragments for T0110 from T0110-2cxbA.44.1.index # command:# created fragments for T0110 from T0110-2cxbA.45.3.index # command:# created fragments for T0110 from T0110-2cxbA.46.4.index # command:# created fragments for T0110 from T0110-2fcbA.27.3.index # command:# created fragments for T0110 from T0110-2fcbA.28.5.index # command:# created fragments for T0110 from T0110-2hbg.91.3.index # command:# created fragments for T0110 from T0110-2hbg.93.5.index # command:# created fragments for T0110 from T0110-2hlcA.14.5.index # command:# created fragments for T0110 from T0110-2hlcA.16.5.index # command:# created fragments for T0110 from T0110-2hlcA.17.4.index # command:# created fragments for T0110 from T0110-2hlcA.18.4.index # command:# created fragments for T0110 from T0110-2olbA.0.2.index # command:# created fragments for T0110 from T0110-2olbA.1.2.index # command:# created fragments for T0110 from T0110-2olbA.1.3.index # command:# created fragments for T0110 from T0110-2olbA.2.0.index # command:# created fragments for T0110 from T0110-2olbA.3.1.index # command:# created fragments for T0110 from T0110-2olbA.4.2.index # command:# created fragments for T0110 from T0110-2olbA.5.3.index # command:# created fragments for T0110 from T0110-2sicI.51.4.index # command:# created fragments for T0110 from T0110-2sicI.52.5.index # command:# created fragments for T0110 from T0110-2sicI.54.3.index # command:# created fragments for T0110 from T0110-2sli.116.5.index # command:# created fragments for T0110 from T0110-2sli.117.3.index # command:# created fragments for T0110 from T0110-2sli.118.3.index # command:# created fragments for T0110 from T0110-3chbD.31.3.index # command:# created fragments for T0110 from T0110-3chbD.32.1.index # command:# created fragments for T0110 from T0110-3chbD.33.2.index # command:# created fragments for T0110 from T0110-3chbD.34.1.index # command:# created fragments for T0110 from T0110-3chbD.35.1.index # command:# created fragments for T0110 from T0110-3chbD.37.1.index # command:# created fragments for T0110 from T0110-4ubpB.15.4.index # command:# created fragments for T0110 from T0110-4ubpB.16.4.index # command:# created fragments for T0110 from T0110-4ubpB.18.5.index # command:# created fragments for T0110 from T0110-5cytR.53.4.index # command:Error: unrecognized command 6~ReadFragments skipped # command:# created fragments for T0110 from T0110-5cytR.56.4.index # command:# created fragments for T0110 from T0110-5cytR.57.5.index # command:# created fragments for T0110 from T0110-5cytR.58.5.index # command:# created fragments for T0110 from T0110-1egaA-local.index # command:# created fragments for T0110 from 1egaA-T0110-fssp-global.index # command:# created fragments for T0110 from T0110-1ah9-karplus.index # command:# created fragments for T0110 from T0110-1lehA-karplus.index # command:# created conformation for T0110 by applying fragments # command:# naming current conformation t110-1lehA # command:# command:# created fragments for T0110 from T0110-1egaA-2track-l.index # command:# created conformation for T0110 by applying fragments # command:# naming current conformation t110-1egaA # command:# command:# Will do 10 iterations of optimization # best score in initial pool at pool[43] 41.7729 bits/residue, 117 clashes 30.229 breaks # optimizing backbone with 50 conformations in pool # doing 7 generations, with 200 new conformations in each generation. # keep at most 20 conformations from old pool # generation 1: best score 38.1634 bits/residue, 105 clashes # Cumulative usage by method: ## InsertFragment 4 ## ReduceClash 7 ## CrossOver 2 ## CrossAndInsert 12 ## TwoFragment 3 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 5 ## ReduceBreak 14 # generation 2: best score 34.8927 bits/residue, 124 clashes 21.7898 breaks # Cumulative usage by method: ## InsertFragment 8 ## ReduceClash 15 ## CrossOver 5 ## CrossAndInsert 27 ## TwoFragment 6 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 13 ## ReduceBreak 21 # generation 3: best score 32.56 bits/residue, 54 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 15 ## ReduceClash 24 ## CrossOver 8 ## CrossAndInsert 41 ## TwoFragment 9 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 21 ## ReduceBreak 22 # generation 4: best score 31.5612 bits/residue, 89 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 19 ## ReduceClash 33 ## CrossOver 10 ## CrossAndInsert 55 ## TwoFragment 16 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 1 ## InsertAlignment 30 ## ReduceBreak 22 # generation 5: best score 29.8685 bits/residue, 34 clashes # Cumulative usage by method: ## InsertFragment 27 ## ReduceClash 43 ## CrossOver 13 ## CrossAndInsert 68 ## TwoFragment 20 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 1 ## InsertAlignment 37 ## ReduceBreak 22 # generation 6: best score 28.5587 bits/residue, 16 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 33 ## ReduceClash 55 ## CrossOver 14 ## CrossAndInsert 86 ## TwoFragment 20 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 1 ## InsertAlignment 44 ## ReduceBreak 22 # generation 7: best score 28.3809 bits/residue, 14 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 42 ## ReduceClash 63 ## CrossOver 16 ## CrossAndInsert 97 ## TwoFragment 25 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 1 ## InsertAlignment 51 ## ReduceBreak 22 # best score in initial pool at pool[27] 32.5234 bits/residue, 39 clashes 0 breaks # optimizing backbone with 50 conformations in pool # doing 7 generations, with 200 new conformations in each generation. # keep at most 20 conformations from old pool # generation 1: best score 29.8251 bits/residue, 12 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 7 ## ReduceClash 9 ## CrossOver 0 ## CrossAndInsert 8 ## TwoFragment 11 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 11 ## ReduceBreak 0 # generation 2: best score 29.4896 bits/residue, 10 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 14 ## ReduceClash 22 ## CrossOver 0 ## CrossAndInsert 12 ## TwoFragment 24 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 21 ## ReduceBreak 0 # generation 3: best score 28.6318 bits/residue, 53 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 23 ## ReduceClash 34 ## CrossOver 0 ## CrossAndInsert 20 ## TwoFragment 33 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 27 ## ReduceBreak 0 # generation 4: best score 28.0513 bits/residue, 32 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 33 ## ReduceClash 45 ## CrossOver 0 ## CrossAndInsert 28 ## TwoFragment 44 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 32 ## ReduceBreak 0 # generation 5: best score 27.553 bits/residue, 32 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 41 ## ReduceClash 52 ## CrossOver 0 ## CrossAndInsert 40 ## TwoFragment 53 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 39 ## ReduceBreak 0 # generation 6: best score 27.0206 bits/residue, 21 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 52 ## ReduceClash 64 ## CrossOver 1 ## CrossAndInsert 46 ## TwoFragment 61 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 43 ## ReduceBreak 0 # generation 7: best score 27.0201 bits/residue, 35 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 65 ## ReduceClash 71 ## CrossOver 1 ## CrossAndInsert 52 ## TwoFragment 70 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 45 ## ReduceBreak 0 # best score in initial pool at pool[35] 43.7621 bits/residue, 257 clashes 35.6438 breaks # optimizing backbone with 50 conformations in pool # doing 7 generations, with 200 new conformations in each generation. # keep at most 20 conformations from old pool # generation 1: best score 37.382 bits/residue, 146 clashes 7.47335 breaks # Cumulative usage by method: ## InsertFragment 8 ## ReduceClash 5 ## CrossOver 0 ## CrossAndInsert 14 ## TwoFragment 8 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 0 ## InsertAlignment 7 ## ReduceBreak 4 # generation 2: best score 32.5045 bits/residue, 96 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 14 ## ReduceClash 9 ## CrossOver 0 ## CrossAndInsert 27 ## TwoFragment 17 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 3 ## InsertAlignment 13 ## ReduceBreak 9 # generation 3: best score 32.1415 bits/residue, 78 clashes 0 breaks # Cumulative usage by method: ## InsertFragment 21 ## ReduceClash 12 ## CrossOver 1 ## CrossAndInsert 40 ## TwoFragment 25 ## InsertSSBond 0 ## OneRotamer 0 ## ClashingRotamer 6 ## InsertAlignment 22 ## ReduceBreak 11