# TARGET T0110 # Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net # This is a 4-layer network, with # window units # 5 10 # 7 10 # 5 10 # 11 3 (1 EHL2 ) # The input amino acid frequencies were determined from # alignment T0110.t2k.a2m.gz # with weighted counts, using EntropyWeight(1.4 bits/column, 10) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 21.99 # # CHAIN 1 Pos AA E H C 10N 1S 5N 5N 5N 1 M 0.083 0.442 0.475 2 A 0.055 0.403 0.542 3 R 0.018 0.413 0.569 4 E 0.008 0.642 0.350 5 F 0.005 0.830 0.165 6 K 0.004 0.902 0.094 7 R 0.003 0.944 0.053 8 S 0.002 0.980 0.018 9 D 0.001 0.988 0.012 10 R 0.001 0.993 0.007 11 V 0.001 0.991 0.009 12 A 0.001 0.993 0.007 13 Q 0.001 0.995 0.005 14 E 0.001 0.993 0.007 15 I 0.001 0.995 0.005 16 Q 0.001 0.995 0.005 17 K 0.001 0.997 0.003 18 E 0.001 0.996 0.004 19 I 0.001 0.993 0.007 20 A 0.001 0.993 0.007 21 V 0.001 0.986 0.013 22 I 0.001 0.977 0.022 23 L 0.001 0.960 0.039 24 Q 0.001 0.954 0.045 25 R 0.002 0.909 0.089 26 E 0.008 0.742 0.250 27 V 0.020 0.319 0.661 28 K 0.042 0.150 0.808 29 D 0.021 0.026 0.953 30 P 0.021 0.183 0.796 31 R 0.057 0.127 0.816 32 I 0.078 0.069 0.853 33 G 0.153 0.041 0.806 34 M 0.642 0.020 0.338 35 V 0.906 0.005 0.089 36 T 0.951 0.001 0.048 37 V 0.940 0.002 0.058 38 S 0.866 0.003 0.132 39 D 0.925 0.003 0.072 40 V 0.971 0.002 0.027 41 E 0.968 0.003 0.028 42 V 0.932 0.005 0.062 43 S 0.706 0.012 0.282 44 S 0.156 0.035 0.810 45 D 0.109 0.039 0.852 46 L 0.425 0.057 0.518 47 S 0.630 0.036 0.334 48 Y 0.890 0.013 0.097 49 A 0.946 0.003 0.051 50 K 0.959 0.002 0.039 51 I 0.990 0.001 0.010 52 F 0.994 0.001 0.005 53 V 0.990 0.001 0.009 54 T 0.960 0.002 0.038 55 F 0.764 0.004 0.232 56 L 0.263 0.008 0.729 57 F 0.047 0.031 0.923 58 D 0.009 0.157 0.834 59 H 0.007 0.184 0.810 60 D 0.007 0.262 0.732 61 E 0.004 0.527 0.468 62 M 0.004 0.769 0.228 63 A 0.004 0.805 0.191 64 I 0.002 0.930 0.068 65 E 0.002 0.967 0.032 66 Q 0.001 0.977 0.021 67 G 0.001 0.988 0.011 68 M 0.001 0.987 0.012 69 K 0.001 0.989 0.010 70 G 0.001 0.986 0.013 71 L 0.001 0.981 0.018 72 E 0.001 0.982 0.018 73 K 0.001 0.981 0.019 74 A 0.001 0.983 0.017 75 S 0.001 0.979 0.021 76 P 0.001 0.873 0.125 77 Y 0.004 0.963 0.034 78 I 0.004 0.981 0.015 79 R 0.003 0.989 0.008 80 S 0.002 0.990 0.008 81 L 0.004 0.978 0.019 82 L 0.006 0.960 0.035 83 G 0.006 0.929 0.065 84 K 0.009 0.867 0.124 85 A 0.037 0.685 0.278 86 M 0.102 0.425 0.474 87 R 0.254 0.218 0.528 88 L 0.528 0.195 0.277 89 R 0.614 0.106 0.279 90 I 0.625 0.058 0.316 91 V 0.368 0.031 0.602 92 P 0.406 0.024 0.570 93 E 0.625 0.021 0.354 94 I 0.834 0.018 0.148 95 R 0.894 0.014 0.092 96 F 0.885 0.015 0.099 97 I 0.805 0.018 0.177 98 Y 0.596 0.031 0.374 99 D 0.177 0.195 0.628 100 Q 0.053 0.286 0.661 101 S 0.028 0.404 0.568 102 L 0.043 0.439 0.518 103 V 0.029 0.514 0.458 104 E 0.016 0.642 0.342 105 G 0.009 0.781 0.211 106 M 0.009 0.835 0.155 107 R 0.010 0.865 0.124 108 M 0.001 0.987 0.012 109 S 0.001 0.990 0.009 110 N 0.001 0.993 0.006 111 L 0.001 0.988 0.011 112 V 0.001 0.982 0.017 113 T 0.001 0.975 0.025 114 N 0.001 0.950 0.049 115 V 0.003 0.895 0.102 116 V 0.003 0.816 0.181 117 R 0.002 0.862 0.136 118 E 0.003 0.722 0.275 119 D 0.008 0.674 0.318 120 E 0.017 0.633 0.350 121 K 0.030 0.632 0.339 122 K 0.070 0.459 0.471 123 H 0.082 0.351 0.568 124 V 0.114 0.244 0.642 125 E 0.066 0.184 0.750 126 E 0.048 0.127 0.825 127 S 0.024 0.066 0.910 128 N 0.009 0.019 0.972