# TARGET T0109 # Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net # This is a 4-layer network, with # window units # 5 10 # 7 10 # 5 10 # 11 3 (1 EHL2 ) # The input amino acid frequencies were determined from # alignment T0109.t2k.a2m.gz # with weighted counts, using EntropyWeight(1.4 bits/column, 10) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 23.2628 # # CHAIN 1 Pos AA E H C 10N 1S 5N 5N 5N 1 M 0.051 0.129 0.820 2 S 0.076 0.172 0.751 3 F 0.136 0.189 0.675 4 D 0.162 0.133 0.705 5 K 0.207 0.062 0.731 6 Q 0.218 0.018 0.764 7 N 0.389 0.003 0.608 8 L 0.881 0.003 0.116 9 I 0.976 0.002 0.022 10 W 0.988 0.002 0.010 11 I 0.970 0.001 0.029 12 D 0.737 0.002 0.261 13 L 0.215 0.051 0.733 14 E 0.073 0.115 0.812 15 M 0.095 0.239 0.666 16 T 0.070 0.166 0.764 17 G 0.040 0.026 0.934 18 L 0.074 0.017 0.909 19 D 0.042 0.016 0.943 20 P 0.007 0.815 0.178 21 E 0.002 0.942 0.056 22 K 0.003 0.963 0.035 23 E 0.012 0.949 0.039 24 R 0.064 0.919 0.017 25 I 0.166 0.820 0.014 26 I 0.433 0.546 0.021 27 E 0.665 0.288 0.047 28 I 0.638 0.325 0.037 29 A 0.882 0.105 0.013 30 T 0.903 0.083 0.014 31 I 0.901 0.072 0.027 32 V 0.906 0.022 0.071 33 T 0.665 0.059 0.277 34 D 0.381 0.120 0.499 35 K 0.054 0.203 0.743 36 N 0.038 0.231 0.731 37 L 0.080 0.310 0.610 38 N 0.120 0.318 0.562 39 I 0.225 0.344 0.431 40 L 0.210 0.346 0.444 41 A 0.155 0.345 0.499 42 E 0.170 0.215 0.615 43 G 0.256 0.077 0.667 44 P 0.564 0.033 0.403 45 V 0.741 0.024 0.235 46 L 0.875 0.021 0.103 47 A 0.926 0.020 0.054 48 V 0.827 0.012 0.161 49 H 0.336 0.013 0.650 50 Q 0.059 0.189 0.753 51 S 0.014 0.293 0.692 52 D 0.008 0.766 0.226 53 E 0.008 0.765 0.226 54 L 0.012 0.834 0.154 55 L 0.007 0.832 0.161 56 N 0.006 0.805 0.190 57 K 0.005 0.700 0.296 58 M 0.006 0.475 0.519 59 N 0.011 0.460 0.529 60 D 0.041 0.283 0.675 61 W 0.057 0.105 0.838 62 C 0.044 0.056 0.900 63 Q 0.004 0.905 0.091 64 K 0.003 0.917 0.080 65 T 0.007 0.910 0.083 66 H 0.026 0.821 0.153 67 S 0.021 0.796 0.183 68 E 0.019 0.752 0.228 69 N 0.021 0.554 0.424 70 G 0.040 0.140 0.820 71 L 0.076 0.136 0.787 72 I 0.064 0.096 0.839 73 E 0.004 0.915 0.081 74 R 0.004 0.930 0.067 75 I 0.007 0.923 0.070 76 K 0.015 0.864 0.122 77 A 0.020 0.796 0.184 78 S 0.014 0.571 0.415 79 K 0.012 0.131 0.857 80 L 0.023 0.082 0.895 81 T 0.018 0.099 0.883 82 E 0.001 0.956 0.043 83 R 0.001 0.978 0.022 84 A 0.001 0.986 0.014 85 A 0.001 0.984 0.016 86 E 0.001 0.984 0.015 87 L 0.001 0.988 0.011 88 Q 0.001 0.992 0.008 89 T 0.001 0.988 0.012 90 L 0.001 0.991 0.009 91 D 0.001 0.987 0.012 92 F 0.001 0.978 0.022 93 L 0.002 0.958 0.041 94 K 0.003 0.916 0.080 95 K 0.006 0.829 0.165 96 W 0.026 0.507 0.467 97 V 0.038 0.145 0.817 98 P 0.045 0.098 0.857 99 K 0.027 0.093 0.880 100 G 0.047 0.059 0.894 101 A 0.146 0.042 0.812 102 S 0.226 0.012 0.763 103 P 0.742 0.013 0.245 104 I 0.869 0.014 0.118 105 C 0.818 0.026 0.156 106 G 0.597 0.054 0.349 107 N 0.245 0.084 0.671 108 S 0.121 0.231 0.647 109 I 0.087 0.388 0.525 110 A 0.074 0.612 0.314 111 Q 0.041 0.766 0.193 112 D 0.013 0.879 0.108 113 K 0.002 0.977 0.021 114 R 0.001 0.987 0.012 115 F 0.001 0.992 0.007 116 L 0.001 0.989 0.010 117 V 0.001 0.990 0.010 118 K 0.001 0.989 0.011 119 Y 0.001 0.976 0.023 120 M 0.002 0.916 0.082 121 P 0.003 0.901 0.096 122 D 0.005 0.863 0.132 123 L 0.010 0.801 0.189 124 A 0.014 0.720 0.266 125 D 0.018 0.603 0.379 126 Y 0.035 0.478 0.487 127 F 0.068 0.231 0.701 128 H 0.088 0.159 0.753 129 Y 0.103 0.201 0.696 130 R 0.131 0.239 0.630 131 H 0.214 0.287 0.500 132 L 0.323 0.243 0.434 133 D 0.308 0.269 0.423 134 V 0.087 0.701 0.212 135 S 0.044 0.729 0.227 136 T 0.018 0.794 0.187 137 L 0.001 0.987 0.012 138 K 0.001 0.989 0.011 139 E 0.001 0.988 0.012 140 L 0.002 0.961 0.037 141 A 0.004 0.926 0.071 142 A 0.004 0.870 0.126 143 R 0.006 0.754 0.241 144 W 0.012 0.500 0.489 145 K 0.007 0.125 0.868 146 P 0.005 0.276 0.719 147 E 0.009 0.420 0.572 148 I 0.015 0.527 0.457 149 L 0.028 0.530 0.441 150 E 0.035 0.442 0.523 151 G 0.027 0.122 0.851 152 F 0.043 0.263 0.694 153 K 0.056 0.295 0.649 154 K 0.035 0.465 0.500 155 E 0.030 0.383 0.586 156 N 0.023 0.408 0.569 157 T 0.015 0.530 0.455 158 H 0.006 0.824 0.169 159 L 0.003 0.915 0.082 160 A 0.002 0.959 0.039 161 L 0.001 0.986 0.013 162 D 0.001 0.992 0.007 163 D 0.001 0.996 0.004 164 I 0.001 0.995 0.005 165 R 0.001 0.997 0.003 166 E 0.001 0.999 0.001 167 S 0.001 0.998 0.002 168 I 0.001 0.999 0.001 169 K 0.001 0.999 0.001 170 E 0.001 0.999 0.001 171 L 0.001 0.997 0.002 172 A 0.001 0.996 0.003 173 Y 0.001 0.991 0.008 174 Y 0.006 0.969 0.025 175 R 0.012 0.910 0.078 176 E 0.024 0.805 0.171 177 H 0.068 0.616 0.316 178 F 0.224 0.316 0.460 179 M 0.267 0.154 0.580 180 K 0.206 0.057 0.737 181 L 0.076 0.033 0.891 182 D 0.016 0.023 0.961