PFRMAT SS
TARGET T0109
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0109.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 23.2628
METHOD
MODEL 1
M C 0.820
S C 0.751
F C 0.675
D C 0.705
K C 0.731
Q C 0.764
N C 0.608
L E 0.881
I E 0.976
W E 0.988
I E 0.970
D E 0.737
L C 0.733
E C 0.812
M C 0.666
T C 0.764
G C 0.934
L C 0.909
D C 0.943
P H 0.815
E H 0.942
K H 0.963
E H 0.949
R H 0.919
I H 0.820
I H 0.546
E E 0.665
I E 0.638
A E 0.882
T E 0.903
I E 0.901
V E 0.906
T E 0.665
D C 0.499
K C 0.743
N C 0.731
L C 0.610
N C 0.562
I C 0.431
L C 0.444
A C 0.499
E C 0.615
G C 0.667
P E 0.564
V E 0.741
L E 0.875
A E 0.926
V E 0.827
H C 0.650
Q C 0.753
S C 0.692
D H 0.766
E H 0.765
L H 0.834
L H 0.832
N H 0.805
K H 0.700
M C 0.519
N C 0.529
D C 0.675
W C 0.838
C C 0.900
Q H 0.905
K H 0.917
T H 0.910
H H 0.821
S H 0.796
E H 0.752
N H 0.554
G C 0.820
L C 0.787
I C 0.839
E H 0.915
R H 0.930
I H 0.923
K H 0.864
A H 0.796
S H 0.571
K C 0.857
L C 0.895
T C 0.883
E H 0.956
R H 0.978
A H 0.986
A H 0.984
E H 0.984
L H 0.988
Q H 0.992
T H 0.988
L H 0.991
D H 0.987
F H 0.978
L H 0.958
K H 0.916
K H 0.829
W H 0.507
V C 0.817
P C 0.857
K C 0.880
G C 0.894
A C 0.812
S C 0.763
P E 0.742
I E 0.869
C E 0.818
G E 0.597
N C 0.671
S C 0.647
I C 0.525
A H 0.612
Q H 0.766
D H 0.879
K H 0.977
R H 0.987
F H 0.992
L H 0.989
V H 0.990
K H 0.989
Y H 0.976
M H 0.916
P H 0.901
D H 0.863
L H 0.801
A H 0.720
D H 0.603
Y C 0.487
F C 0.701
H C 0.753
Y C 0.696
R C 0.630
H C 0.500
L C 0.434
D C 0.423
V H 0.701
S H 0.729
T H 0.794
L H 0.987
K H 0.989
E H 0.988
L H 0.961
A H 0.926
A H 0.870
R H 0.754
W H 0.500
K C 0.868
P C 0.719
E C 0.572
I H 0.527
L H 0.530
E C 0.523
G C 0.851
F C 0.694
K C 0.649
K C 0.500
E C 0.586
N C 0.569
T H 0.530
H H 0.824
L H 0.915
A H 0.959
L H 0.986
D H 0.992
D H 0.996
I H 0.995
R H 0.997
E H 0.999
S H 0.998
I H 0.999
K H 0.999
E H 0.999
L H 0.997
A H 0.996
Y H 0.991
Y H 0.969
R H 0.910
E H 0.805
H H 0.616
F C 0.460
M C 0.580
K C 0.737
L C 0.891
D C 0.961
END