make -k T0108-blast.rdb T0108-double-blast.rdb make[1]: Entering directory `/auto/projects/compbio/experiments/casp4/t108' /projects/compbio/experiments/casp4/scripts/single-blast -q T0108.seq -interdb /projects/compbio/data/nrp/nr -db /projects/compbio/data/pdb/all-protein > T0108-blast.rdb starting T0108 with E=10 /projects/compbio/experiments/casp4/scripts/double-blast -q T0108.seq -interdb /projects/compbio/data/nrp/nr -db /projects/compbio/data/pdb/all-protein > T0108-double-blast.rdb starting T0108 with E=0.000050 T0108 T0108 blasting: T0108 gi|121795|sp|P19570|GUN3_BACS4_407:605 blasting: T0108 gi|121837|sp|P06564|GUN_BACS1_377:568 blasting: T0108 gi|80147|pir||JT0611_377:568 blasting: T0108 gi|121838|sp|P19424|GUN_BACS6_557:748 blasting: T0108 gi|289266|gb|AAA73189.1|_376:567 blasting: T0108 gi|1339852|dbj|BAA12744.1|_377:572 blasting: T0108 gi|1345369|dbj|BAA12826.1|_359:554 blasting: T0108 gi|7475991|pir||JC5487_355:557 blasting: T0108 gi|7459698|pir||JC5467_377:572 blasting: make[1]: Leaving directory `/auto/projects/compbio/experiments/casp4/t108' make -k T0108.t2k.a2m.gz \ T0108.t2k.pa \ T0108.t2k.pa.html \ T0108.t2k.2d \ T0108.t2k.tree \ T0108.t2k_sorted.pa \ T0108.t2k.tree.ps \ T0108.t2k.tree-unroot.ps make[1]: Entering directory `/auto/projects/compbio/experiments/casp4/t108' /projects/compbio/experiments/models.97/scripts2k/target2k -out T0108.t2k \ -seed T0108.seq \ -all @@@@ chgrp protein /projects/compbio/tmp/target2k-alpha-10052 @@@@ cp /projects/compbio/experiments/casp4/t108/T0108.seq m0.a2m @@@@ checkseq foo -alphabet protein -db m0.a2m > init.check SAM: checkseq v3.2 (June, 2000) compiled 07/06/00_15:43:49 # About to count sequences in /projects/compbio/data/nrp/nr /projects/compbio/experiments/models.97/scripts2k/target2k: E-value thresholds used are prefilter: 0.01, actual: 0.0001 prefilter: 1, actual: 0.0002 prefilter: 10, actual: 0.001 prefilter: 400, actual: 0.005 /projects/compbio/experiments/models.97/scripts2k/target2k: aweight_bits are 0.8, 0.7, 0.6, 0.5 /projects/compbio/experiments/models.97/scripts2k/target2k: db_size= 517398 reverse_diff= 4 /projects/compbio/experiments/models.97/scripts2k/target2k: blast_max_report= 20000 /projects/compbio/experiments/models.97/scripts2k/target2k: db=/projects/compbio/data/nrp/nr /projects/compbio/experiments/models.97/scripts2k/target2k: aweight_method=1 aweight_exponent=10 /projects/compbio/experiments/models.97/scripts2k/target2k: force_seed=1 constraints=1 /projects/compbio/experiments/models.97/scripts2k/target2k: jump_in=0.2 jump_out=1 fimstrength=1 fimtrans=-1 @@@@ blast-prefilter -out prefilter -seed m0.a2m -prefilter_thresholds 0.01,1,10,400 -db /projects/compbio/data/nrp/nr -blast_max_report 20000 @@@@ chgrp protein /projects/compbio/tmp/blast-prefilter-alpha-11414 /projects/compbio/experiments/models.97/scripts2k/blast-prefilter: E-value thresholds used are For /projects/compbio/tmp/target2k-alpha-10052/prefilter_1.fa, 0.01 For /projects/compbio/tmp/target2k-alpha-10052/prefilter_2.fa, 1 For /projects/compbio/tmp/target2k-alpha-10052/prefilter_3.fa, 10 For /projects/compbio/tmp/target2k-alpha-10052/prefilter_4.fa, 400 /projects/compbio/experiments/models.97/scripts2k/blast-prefilter: db=/projects/compbio/data/nrp/nr @@@@ uniqueseq init -alignfile /projects/compbio/tmp/target2k-alpha-10052/m0.a2m -a protein -a2mdots 0 SAM: uniqueseq v3.2 (June, 2000) compiled 07/06/00_15:43:59 Reading alignment file /projects/compbio/tmp/target2k-alpha-10052/m0.a2m (1 sequences, 206 columns) as A2M alignment. Writing sequence output to init.a2m. No sequences have been dropped. @@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 1.fasta E=400 V=20000 B=0 -gi > 1.fasta-blast.out Searched 517398 sequences # parsing wu-blastp output @@@@ rm -f 1.fasta < /dev/null @@@@ rm -f 1.fasta-blast.out < /dev/null # Extracting hits in FASTA format from /projects/compbio/data/nrp/nr @@@@ rm -rf /projects/compbio/tmp/blast-prefilter-alpha-11414 < /dev/null @@@@ modelfromalign unused -alignfile m0.a2m \ -constraints_from_align 1 -constraints_out m0.cst SAM: modelfromalign v3.2 (June, 2000) compiled 07/06/00_15:43:15 Reading alignment file m0.a2m (1 sequences, 206 columns) as A2M alignment. # About to count sequences in m0.a2m # About to count sequences in prefilter_1.fa @@@@ modelfromalign tmp_1-a -alignfile m0.a2m \ -insert /projects/compbio/lib/gap1.5.regularizer \ -aweight_bits 0.8\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 -constraints m0.cst -constraints_out tmp_1-a.cst Reading parameter file /projects/compbio/lib/gap1.5.regularizer /projects/compbio/lib/gap1.5.regularizer(1): Reading REGULARIZER: gap1.5. Weak regularizer, gaps average 1.5, matches average 10 SAM: modelfromalign v3.2 (June, 2000) compiled 07/06/00_15:43:15 Reading alignment file m0.a2m (1 sequences, 206 columns) as A2M alignment. @@@@ hmmscore tmp_1-a -i tmp_1-a.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 517398 \ -simple_threshold -26.3669080550283 -Emax 0.0001 \ -adpstyle 1 \ -align_short 0 -mdEmax 0.0001\ -select_score 4 \ -select_seq 4 \ -select_mdalign 4 -select_md 4 -Motifcutoff 0.0970873786407767 -db prefilter_1.fa -constraints tmp_1-a.cst -constraints_out tmp_1-a-md.cst Reading parameter file tmp_1-a.mod tmp_1-a.mod(21): Reading MODEL -- Model from alignment file m0.a2m SAM: hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -175.141006 Database has 9 sequences with 7262 residues. @@@@ sortseq tmp_1-a-sort -alignfile tmp_1-a.mult \ -NLLfile tmp_1-a.mstat -a2mdots 0 SAM: sortseq v3.2 (June, 2000) compiled 07/06/00_15:43:43 Reading alignment file tmp_1-a.mult (9 sequences, 206 columns) as A2M alignment. Reading scores from file tmp_1-a.mstat Writing sequence output to tmp_1-a-sort.a2m. @@@@ cat m0.a2m tmp_1-a-sort.a2m > tmp_1-a.train.seq @@@@ cat m0.cst tmp_1-a-md.cst > tmp_1-a.train.cst # About to count sequences in tmp_1-a.train.seq # num_seqs=10 nll_thresh=-22.3669080550283 frac_id=0.99999999984538 @@@@ uniqueseq thinned_tmp -alignfile tmp_1-a.train.seq -a protein \ -percent_id 0.99999999984538 -a2mdots 0 SAM: uniqueseq v3.2 (June, 2000) compiled 07/06/00_15:43:59 Reading alignment file tmp_1-a.train.seq (10 sequences, 206 columns) as A2M alignment. Writing sequence output to thinned_tmp.a2m. Dropping 1 (of 10) duplicate sequences with differing IDs 9 sequences left after dropping 1 of 10 sequences. @@@@ modelfromalign junk_for_weights \ -alignfile tmp_1-a.train.seq \ -aweight_bits 0.8\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 SAM: modelfromalign v3.2 (June, 2000) compiled 07/06/00_15:43:15 Reading alignment file tmp_1-a.train.seq (9 sequences, 206 columns) as A2M alignment. @@@@ buildmodel tmp_1-b -insert tmp_1-a.mod\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -modellength 0 \ -internal_weight 0 \ -anneal_length 2 \ -many_files 1 \ -Nseq 20000\ -nsurgery 0 \ -fracinsert 0.2 \ -cutinsert 0.25 -cutmatch 0.2 -initial_noise 0.0001 -anneal_noise 0.000001 \ -internal_weight 0 \ -train tmp_1-a.train.seq \ -nmodels 1\ -insert /projects/compbio/lib/gap1.5.regularizer -sequence_weights tmp_1-a.w -constraints tmp_1-a.train.cst Reading parameter file tmp_1-a.mod tmp_1-a.mod(21): Reading MODEL -- Model from alignment file m0.a2m Command line option(48): internal_weight has already been set. Using 0. Reading parameter file /projects/compbio/lib/gap1.5.regularizer /projects/compbio/lib/gap1.5.regularizer(1): Reading REGULARIZER: gap1.5. Weak regularizer, gaps average 1.5, matches average 10 SAM: buildmodel v3.2 (June, 2000) compiled 07/07/00_22:42:24 -585.99 -275.04 -325.91 100.89 12 0 207 @@@@ hmmscore tmp_1-b -i tmp_1-b.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 517398 \ -db m0.a2m -db tmp_1-a.sel \ -select_score 4 \ -select_seq 4 \ -simple_threshold -26.3669080550283 -Emax 0.0001 \ -select_mdalign 4 -select_md 4 \ -adpstyle 1 \ -Motifcutoff 0.0970873786407767 \ -align_short 5 -mdEmax 0.0001 -constraints tmp_1-a.train.cst -constraints_out /projects/compbio/experiments/casp4/t108/T0108.t2k_1.cst Reading parameter file tmp_1-b.mod tmp_1-b.mod(18): Reading MODEL -- Final model for run tmp_1-b SAM: hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -324.403992 Database has 10 sequences with 7468 residues. @@@@ cp -f tmp_1-b.mult /projects/compbio/experiments/casp4/t108/T0108.t2k_1.a2m # About to count sequences in prefilter_2.fa @@@@ modelfromalign tmp_2-a -alignfile /projects/compbio/experiments/casp4/t108/T0108.t2k_1.a2m \ -insert /projects/compbio/lib/stiff-gap5.regularizer \ -aweight_bits 0.7\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 -constraints /projects/compbio/experiments/casp4/t108/T0108.t2k_1.cst -constraints_out tmp_2-a.cst Reading parameter file /projects/compbio/lib/stiff-gap5.regularizer /projects/compbio/lib/stiff-gap5.regularizer(1): Reading REGULARIZER: gap5. stiff regularizer, gaps averge 5, matches average 10 SAM: modelfromalign v3.2 (June, 2000) compiled 07/06/00_15:43:15 Reading alignment file /projects/compbio/experiments/casp4/t108/T0108.t2k_1.a2m (10 sequences, 206 columns) as A2M alignment. @@@@ hmmscore tmp_2-a -i tmp_2-a.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 517398 \ -simple_threshold -25.673760874275 -Emax 0.0002 \ -adpstyle 1 \ -align_short 0 -mdEmax 0.0002\ -select_score 4 \ -select_seq 4 \ -select_mdalign 4 -select_md 4 -Motifcutoff 0.0970873786407767 -db prefilter_2.fa -constraints tmp_2-a.cst -constraints_out tmp_2-a-md.cst Reading parameter file tmp_2-a.mod tmp_2-a.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/experiments/casp4/t108/T0108.t2k_1.a2m SAM: hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -122.977036 Database has 21 sequences with 11820 residues. @@@@ sortseq tmp_2-a-sort -alignfile tmp_2-a.mult \ -NLLfile tmp_2-a.mstat -a2mdots 0 SAM: sortseq v3.2 (June, 2000) compiled 07/06/00_15:43:43 Reading alignment file tmp_2-a.mult (9 sequences, 206 columns) as A2M alignment. Reading scores from file tmp_2-a.mstat Writing sequence output to tmp_2-a-sort.a2m. @@@@ cat m0.a2m tmp_2-a-sort.a2m > tmp_2-a.train.seq @@@@ cat m0.cst tmp_2-a-md.cst > tmp_2-a.train.cst # About to count sequences in tmp_2-a.train.seq # num_seqs=10 nll_thresh=-21.673760874275 frac_id=0.99999999969076 @@@@ uniqueseq thinned_tmp -alignfile tmp_2-a.train.seq -a protein \ -percent_id 0.99999999969076 -a2mdots 0 SAM: uniqueseq v3.2 (June, 2000) compiled 07/06/00_15:43:59 Reading alignment file tmp_2-a.train.seq (10 sequences, 206 columns) as A2M alignment. Writing sequence output to thinned_tmp.a2m. Dropping 1 (of 10) duplicate sequences with differing IDs 9 sequences left after dropping 1 of 10 sequences. @@@@ modelfromalign junk_for_weights \ -alignfile tmp_2-a.train.seq \ -aweight_bits 0.7\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 SAM: modelfromalign v3.2 (June, 2000) compiled 07/06/00_15:43:15 Reading alignment file tmp_2-a.train.seq (9 sequences, 206 columns) as A2M alignment. @@@@ buildmodel tmp_2-b -insert tmp_2-a.mod\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -modellength 0 \ -internal_weight 0 \ -anneal_length 2 \ -many_files 1 \ -Nseq 20000\ -nsurgery 0 \ -fracinsert 0.2 \ -cutinsert 0.25 -cutmatch 0.2 -initial_noise 0.0001 -anneal_noise 0.000001 \ -internal_weight 0 \ -train tmp_2-a.train.seq \ -nmodels 1\ -insert /projects/compbio/lib/stiff-gap5.regularizer -sequence_weights tmp_2-a.w -constraints tmp_2-a.train.cst Reading parameter file tmp_2-a.mod tmp_2-a.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/experiments/casp4/t108/T0108.t2k_1.a2m Command line option(48): internal_weight has already been set. Using 0. Reading parameter file /projects/compbio/lib/stiff-gap5.regularizer /projects/compbio/lib/stiff-gap5.regularizer(1): Reading REGULARIZER: gap5. stiff regularizer, gaps averge 5, matches average 10 SAM: buildmodel v3.2 (June, 2000) compiled 07/07/00_22:42:24 -584.98 -253.00 -308.01 107.33 7 0 207 @@@@ hmmscore tmp_2-b -i tmp_2-b.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 517398 \ -db m0.a2m -db tmp_2-a.sel \ -select_score 4 \ -select_seq 4 \ -simple_threshold -25.673760874275 -Emax 0.0002 \ -select_mdalign 4 -select_md 4 \ -adpstyle 1 \ -Motifcutoff 0.0970873786407767 \ -align_short 5 -mdEmax 0.0002 -constraints tmp_2-a.train.cst -constraints_out /projects/compbio/experiments/casp4/t108/T0108.t2k_2.cst Reading parameter file tmp_2-b.mod tmp_2-b.mod(18): Reading MODEL -- Final model for run tmp_2-b SAM: hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -305.461914 Database has 10 sequences with 7468 residues. @@@@ cp -f tmp_2-b.mult /projects/compbio/experiments/casp4/t108/T0108.t2k_2.a2m # About to count sequences in prefilter_3.fa @@@@ modelfromalign tmp_3-a -alignfile /projects/compbio/experiments/casp4/t108/T0108.t2k_2.a2m \ -insert /projects/compbio/lib/stiff-gap5.regularizer \ -aweight_bits 0.6\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 -constraints /projects/compbio/experiments/casp4/t108/T0108.t2k_2.cst -constraints_out tmp_3-a.cst Reading parameter file /projects/compbio/lib/stiff-gap5.regularizer /projects/compbio/lib/stiff-gap5.regularizer(1): Reading REGULARIZER: gap5. stiff regularizer, gaps averge 5, matches average 10 SAM: modelfromalign v3.2 (June, 2000) compiled 07/06/00_15:43:15 Reading alignment file /projects/compbio/experiments/casp4/t108/T0108.t2k_2.a2m (10 sequences, 206 columns) as A2M alignment. @@@@ hmmscore tmp_3-a -i tmp_3-a.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 517398 \ -simple_threshold -24.0643229602947 -Emax 0.001 \ -adpstyle 1 \ -align_short 0 -mdEmax 0.001\ -select_score 4 \ -select_seq 4 \ -select_mdalign 4 -select_md 4 -Motifcutoff 0.0970873786407767 -db prefilter_3.fa -constraints tmp_3-a.cst -constraints_out tmp_3-a-md.cst Reading parameter file tmp_3-a.mod tmp_3-a.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/experiments/casp4/t108/T0108.t2k_2.a2m SAM: hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -78.012367 Database has 35 sequences with 18271 residues. @@@@ sortseq tmp_3-a-sort -alignfile tmp_3-a.mult \ -NLLfile tmp_3-a.mstat -a2mdots 0 SAM: sortseq v3.2 (June, 2000) compiled 07/06/00_15:43:43 Reading alignment file tmp_3-a.mult (10 sequences, 206 columns) as A2M alignment. Reading scores from file tmp_3-a.mstat Writing sequence output to tmp_3-a-sort.a2m. @@@@ cat m0.a2m tmp_3-a-sort.a2m > tmp_3-a.train.seq @@@@ cat m0.cst tmp_3-a-md.cst > tmp_3-a.train.cst # About to count sequences in tmp_3-a.train.seq # num_seqs=11 nll_thresh=-20.0643229602947 frac_id=0.999999990418553 @@@@ uniqueseq thinned_tmp -alignfile tmp_3-a.train.seq -a protein \ -percent_id 0.999999990418553 -a2mdots 0 SAM: uniqueseq v3.2 (June, 2000) compiled 07/06/00_15:43:59 Reading alignment file tmp_3-a.train.seq (11 sequences, 206 columns) as A2M alignment. Writing sequence output to thinned_tmp.a2m. Dropping 1 (of 11) duplicate sequences with differing IDs 10 sequences left after dropping 1 of 11 sequences. @@@@ modelfromalign junk_for_weights \ -alignfile tmp_3-a.train.seq \ -aweight_bits 0.6\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 SAM: modelfromalign v3.2 (June, 2000) compiled 07/06/00_15:43:15 Reading alignment file tmp_3-a.train.seq (10 sequences, 206 columns) as A2M alignment. @@@@ buildmodel tmp_3-b -insert tmp_3-a.mod\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -modellength 0 \ -internal_weight 0 \ -anneal_length 2 \ -many_files 1 \ -Nseq 20000\ -nsurgery 0 \ -fracinsert 0.2 \ -cutinsert 0.25 -cutmatch 0.2 -initial_noise 0.0001 -anneal_noise 0.000001 \ -internal_weight 0 \ -train tmp_3-a.train.seq \ -nmodels 1\ -insert /projects/compbio/lib/stiff-gap5.regularizer -sequence_weights tmp_3-a.w -constraints tmp_3-a.train.cst Reading parameter file tmp_3-a.mod tmp_3-a.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/experiments/casp4/t108/T0108.t2k_2.a2m Command line option(48): internal_weight has already been set. Using 0. Reading parameter file /projects/compbio/lib/stiff-gap5.regularizer /projects/compbio/lib/stiff-gap5.regularizer(1): Reading REGULARIZER: gap5. stiff regularizer, gaps averge 5, matches average 10 SAM: buildmodel v3.2 (June, 2000) compiled 07/07/00_22:42:24 -585.93 -36.52 -263.06 134.54 8 0 207 @@@@ hmmscore tmp_3-b -i tmp_3-b.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 517398 \ -db m0.a2m -db tmp_3-a.sel \ -select_score 4 \ -select_seq 4 \ -simple_threshold -24.0643229602947 -Emax 0.001 \ -select_mdalign 4 -select_md 4 \ -adpstyle 1 \ -Motifcutoff 0.0970873786407767 \ -align_short 5 -mdEmax 0.001 -constraints tmp_3-a.train.cst -constraints_out /projects/compbio/experiments/casp4/t108/T0108.t2k_3.cst Reading parameter file tmp_3-b.mod tmp_3-b.mod(18): Reading MODEL -- Final model for run tmp_3-b SAM: hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -266.540253 Database has 11 sequences with 8217 residues. @@@@ cp -f tmp_3-b.mult /projects/compbio/experiments/casp4/t108/T0108.t2k_3.a2m # About to count sequences in prefilter_4.fa @@@@ modelfromalign tmp_4-a -alignfile /projects/compbio/experiments/casp4/t108/T0108.t2k_3.a2m \ -insert /projects/compbio/lib/fssp-trained.regularizer \ -aweight_bits 0.5\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 -constraints /projects/compbio/experiments/casp4/t108/T0108.t2k_3.cst -constraints_out tmp_4-a.cst Reading parameter file /projects/compbio/lib/fssp-trained.regularizer /projects/compbio/lib/fssp-trained.regularizer(1): Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP SAM: modelfromalign v3.2 (June, 2000) compiled 07/06/00_15:43:15 Reading alignment file /projects/compbio/experiments/casp4/t108/T0108.t2k_3.a2m (18 sequences, 206 columns) as A2M alignment. @@@@ hmmscore tmp_4-a -i tmp_4-a.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 517398 \ -simple_threshold -22.4548850401296 -Emax 0.005 \ -adpstyle 1 \ -align_short 0 -mdEmax 0.005\ -select_score 4 \ -select_seq 4 \ -select_mdalign 4 -select_md 4 -Motifcutoff 0.0970873786407767 -db prefilter_4.fa -constraints tmp_4-a.cst -constraints_out tmp_4-a-md.cst Reading parameter file tmp_4-a.mod tmp_4-a.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/experiments/casp4/t108/T0108.t2k_3.a2m SAM: hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.758151 Database has 450 sequences with 178330 residues. @@@@ sortseq tmp_4-a-sort -alignfile tmp_4-a.mult \ -NLLfile tmp_4-a.mstat -a2mdots 0 SAM: sortseq v3.2 (June, 2000) compiled 07/06/00_15:43:43 Reading alignment file tmp_4-a.mult (18 sequences, 206 columns) as A2M alignment. Reading scores from file tmp_4-a.mstat Writing sequence output to tmp_4-a-sort.a2m. @@@@ cat m0.a2m tmp_4-a-sort.a2m > tmp_4-a.train.seq @@@@ cat m0.cst tmp_4-a-md.cst > tmp_4-a.train.cst # About to count sequences in tmp_4-a.train.seq # num_seqs=19 nll_thresh=-18.4548850401296 frac_id=0.999951614066909 @@@@ uniqueseq thinned_tmp -alignfile tmp_4-a.train.seq -a protein \ -percent_id 0.999951614066909 -a2mdots 0 SAM: uniqueseq v3.2 (June, 2000) compiled 07/06/00_15:43:59 Reading alignment file tmp_4-a.train.seq (19 sequences, 206 columns) as A2M alignment. Writing sequence output to thinned_tmp.a2m. Dropping 3 (of 19) duplicate sequences with differing IDs Dropping 1 (of 19) sequences with > 100.0% id 15 sequences left after dropping 4 of 19 sequences. @@@@ modelfromalign junk_for_weights \ -alignfile tmp_4-a.train.seq \ -aweight_bits 0.5\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 SAM: modelfromalign v3.2 (June, 2000) compiled 07/06/00_15:43:15 Reading alignment file tmp_4-a.train.seq (15 sequences, 206 columns) as A2M alignment. @@@@ buildmodel tmp_4-b -insert tmp_4-a.mod\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -modellength 0 \ -internal_weight 0 \ -anneal_length 2 \ -many_files 1 \ -Nseq 20000\ -nsurgery 0 \ -fracinsert 0.2 \ -cutinsert 0.25 -cutmatch 0.2 -initial_noise 0.0001 -anneal_noise 0.000001 \ -internal_weight 0 \ -train tmp_4-a.train.seq \ -nmodels 1\ -insert /projects/compbio/lib/fssp-trained.regularizer -sequence_weights tmp_4-a.w -constraints tmp_4-a.train.cst Reading parameter file tmp_4-a.mod tmp_4-a.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/experiments/casp4/t108/T0108.t2k_3.a2m Command line option(48): internal_weight has already been set. Using 0. Reading parameter file /projects/compbio/lib/fssp-trained.regularizer /projects/compbio/lib/fssp-trained.regularizer(1): Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP SAM: buildmodel v3.2 (June, 2000) compiled 07/07/00_22:42:24 -587.16 -137.96 -214.82 109.78 10 0 207 @@@@ hmmscore tmp_4-b -i tmp_4-b.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 517398 \ -db m0.a2m -db tmp_4-a.sel \ -select_score 4 \ -select_seq 4 \ -simple_threshold -22.4548850401296 -Emax 0.005 \ -select_mdalign 4 -select_md 4 \ -adpstyle 1 \ -Motifcutoff 0.0970873786407767 \ -align_short 5 -mdEmax 0.005 -constraints tmp_4-a.train.cst -constraints_out /projects/compbio/experiments/casp4/t108/T0108.t2k_4.cst Reading parameter file tmp_4-b.mod tmp_4-b.mod(18): Reading MODEL -- Final model for run tmp_4-b SAM: hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -245.851822 Database has 11 sequences with 8217 residues. @@@@ cp -f tmp_4-b.mult /projects/compbio/experiments/casp4/t108/T0108.t2k_4.a2m @@@@ modelfromalign tmp_5-a -alignfile /projects/compbio/experiments/casp4/t108/T0108.t2k_4.a2m \ -insert /projects/compbio/lib/fssp-trained.regularizer \ -aweight_bits 0.5\ -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \ -aweight_method 1\ -aweight_exponent 10 -constraints /projects/compbio/experiments/casp4/t108/T0108.t2k_4.cst -constraints_out tmp_5-a.cst Reading parameter file /projects/compbio/lib/fssp-trained.regularizer /projects/compbio/lib/fssp-trained.regularizer(1): Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP SAM: modelfromalign v3.2 (June, 2000) compiled 07/06/00_15:43:15 Reading alignment file /projects/compbio/experiments/casp4/t108/T0108.t2k_4.a2m (19 sequences, 206 columns) as A2M alignment. @@@@ hmmscore tmp_5-a -i tmp_5-a.mod -fimtrans -1\ -fimstrength 1\ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -binary_output 1\ -prior_library /projects/compbio/lib/recode3.20comp \ -a2mdots 0 \ -a protein \ -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\ -dpstyle 0 \ -subtract_null 4 -sort 2 \ -db_size 517398 \ -simple_threshold -22.4548850401296 -Emax 0.005 \ -adpstyle 5 \ -align_short 0 -mdEmax 0.005\ -select_score 4 \ -select_seq 4 \ -select_mdalign 4 -select_md 4 -Motifcutoff 0.0970873786407767 -db prefilter_4.fa -constraints tmp_5-a.cst -constraints_out tmp_5-a-md.cst Reading parameter file tmp_5-a.mod tmp_5-a.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/experiments/casp4/t108/T0108.t2k_4.a2m SAM: hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.424977 Database has 450 sequences with 178330 residues. @@@@ sortseq tmp_5-a-sort -alignfile tmp_5-a.mult \ -NLLfile tmp_5-a.mstat -a2mdots 0 SAM: sortseq v3.2 (June, 2000) compiled 07/06/00_15:43:43 Reading alignment file tmp_5-a.mult (18 sequences, 206 columns) as A2M alignment. Reading scores from file tmp_5-a.mstat Writing sequence output to tmp_5-a-sort.a2m. @@@@ cat m0.a2m tmp_5-a-sort.a2m > tmp_5-a.train.seq @@@@ cat m0.cst tmp_5-a-md.cst > tmp_5-a.train.cst @@@@ cp tmp_5-a.train.seq /projects/compbio/experiments/casp4/t108/T0108.t2k.a2m @@@@ cp tmp_5-a.train.cst /projects/compbio/experiments/casp4/t108/T0108.t2k.cst @@@@ rm -rf /projects/compbio/tmp/target2k-alpha-10052 < /dev/null gzip -f T0108.t2k.a2m T0108.t2k_*.a2m prettyalign T0108.t2k.a2m.gz -m8 -i -n -L3333 > T0108.t2k.pa SAM: prettyalign v3.2 (June, 2000) compiled 07/10/00_09:40:44 gunzip -c T0108.t2k.a2m.gz > tmp.a2m a2m2html -a2m_in tmp.a2m -retrieve > T0108.t2k.pa.html SAM: /projects/compbio/bin/alpha/prettyalign v3.2 (June, 2000) compiled 07/10/00_09:40:44 rm tmp.a2m echo ReadNeuralNet /projects/compbio/usr/karplus/predict-2nd/testing/networks/overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net > tmp.script echo ReadA2M T0108.t2k.a2m.gz >> tmp.script echo PrintPrediction T0108.t2k.2d 3670-4530-6947 >> tmp.script echo PrintPredictionFasta T0108.t2k.2d.seq >> tmp.script echo PrintRDB T0108.t2k.2d.rdb >> tmp.script predict-2nd < tmp.script # command:# Neural network set to overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net # command:# Reading A2M format from T0108.t2k.a2m.gz # Using SequenceWeight EntropyWeight(1.4, 10) # Using regularizer /projects/compbio/lib/recode3.20comp for sequence weight regularizer. # T0108.t2k.a2m with 19 sequences, total weight= 6.95511 avg weight= 0.366058 39 iterations Regularizing alignment for T0108.t2k.a2m.gz # After reading T0108.t2k.a2m.gz, have 206 columns in 1 chains # command:# Initializing Gain for FinalLayer # Initializing Gain for ordering_layer # Initializing Gain for SecondLayer # Initializing Gain for FirstLayer # Network initialization done # Printing prediction to T0108.t2k.2d # command:# Network initialization done # Printing prediction in FASTA format to T0108.t2k.2d.seq # command:# Network initialization done # Printing prediction to T0108.t2k.2d.rdb # command:rm tmp.script gunzip -f T0108.t2k.a2m.gz /projects/compbio/usr/karplus/src/phytree/phytree -o -i -r flat T0108.t2k T0108.t2k.a2m /projects/compbio/lib/recode2.20comp Prior library /projects/compbio/lib/recode2.20comp read. Reading alignment file T0108.t2k.a2m (19 sequences) as A2M alignment. Alignment T0108.t2k.a2m read. Adding sequences:0 10 One dot for every 10 merges: .. Merges done. CPU = user 0: 0:11 system 0: 0: 0 gzip -f T0108.t2k.a2m gzip -f T0108.t2k_sorted.a2m rm T0108.t2k.phytrace T0108.t2k.tree_weight prettyalign T0108.t2k_sorted.a2m.gz -m8 -i -n -L3333 > T0108.t2k_sorted.pa SAM: prettyalign v3.2 (June, 2000) compiled 07/10/00_09:40:44 /projects/compbio/usr/karplus/src/phytree/dg T0108.t2k.tree /projects/compbio/usr/karplus/src/phytree/dtree T0108.t2k.tree make[1]: Leaving directory `/auto/projects/compbio/experiments/casp4/t108' /projects/compbio/experiments/models.97/scripts99/score-target -alignment T0108.t2k.a2m.gz -build w0.5 \ -db /projects/compbio/data/pdb/all-protein \ -Emax 40.0 \ -viterbi 0 -sw_score 2 \ -output T0108.t2k-w0.5-pdb.rdb PATH=.:/projects/compbio/experiments/models.97/scripts99:/projects/compbio/bin:/projects/compbio/bin/alpha:/projects/compbio/bin/hmmscripts:/projects/compbio/bin/scripts:/sbin:/usr/sbin:/bin:/usr/bin:/usr/local/gnu/bin:/usr/local/share/request/bin:/usr/local/bin @@@@ mkdir /projects/compbio/tmp/score-target-12016 @@@@ mkdir /projects/compbio/tmp/score-target-12016/for-scorescript @@@@ /projects/compbio/experiments/models.97/scripts99/score-mods-vs-seqs.pl -root_tmp /projects/compbio/tmp/score-target-12016/for-scorescript -a2msfile /projects/compbio/tmp/score-target-12016/score-target.a2m \ -buildscript /projects/compbio/bin/scripts/w0.5 -seqfile /projects/compbio/data/pdb/all-protein -Emax 40.0 -viterbi 0 \ -sw_score 2 -output /projects/compbio/tmp/score-target-12016/score-target.op @@@@ chgrp protein /projects/compbio/tmp/score-target-12016/for-scorescript/split-tmp @@@@ chgrp protein /projects/compbio/tmp/score-target-12016/for-scorescript/split-tmp @@@@ /projects/compbio/bin/scripts/w0.5 /projects/compbio/experiments/casp4/t108/T0108.t2k.a2m.gz /projects/compbio/tmp/score-target-12016/for-scorescript/split-tmp/alpha-29107/T0108.t2k.mod Reading /projects/compbio/bin/scripts/sam-t99.conf @@@@ chgrp protein /projects/compbio/tmp/tmp-build-weighted-model-alpha-16803 @@@@ uniqueseq /projects/compbio/tmp/tmp-build-weighted-model-alpha-16803/tmp -alignfile /projects/compbio/experiments/casp4/t108/T0108.t2k.a2m.gz \ -a protein -percent_id 0.8 SAM: uniqueseq v3.2 (June, 2000) compiled 07/06/00_15:43:59 Reading alignment file /projects/compbio/experiments/casp4/t108/T0108.t2k.a2m.gz (19 sequences, 206 columns) as A2M alignment. Writing sequence output to /projects/compbio/tmp/tmp-build-weighted-model-alpha-16803/tmp.a2m. Dropping 3 (of 19) duplicate sequences with differing IDs Dropping 5 (of 19) sequences with > 80.0% id 11 sequences left after dropping 8 of 19 sequences. @@@@ modelfromalign /projects/compbio/tmp/tmp-build-weighted-model-alpha-16803/tmp -alignfile /projects/compbio/tmp/tmp-build-weighted-model-alpha-16803/tmp.a2m \ -insert /projects/compbio/lib/fssp-trained.regularizer \ -ins_jump_conf 1 \ -match_jump_conf 1 \ -del_jump_conf 1 \ -prior_library /projects/compbio/lib/recode3.20comp \ -binary_output 1 -a protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10 Reading parameter file /projects/compbio/lib/fssp-trained.regularizer /projects/compbio/lib/fssp-trained.regularizer(1): Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP SAM: modelfromalign v3.2 (June, 2000) compiled 07/06/00_15:43:15 Reading alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16803/tmp.a2m (11 sequences, 206 columns) as A2M alignment. @@@@ cp -f /projects/compbio/tmp/tmp-build-weighted-model-alpha-16803/tmp.mod /projects/compbio/tmp/score-target-12016/for-scorescript/split-tmp/alpha-29107/T0108.t2k.mod Reading /projects/compbio/bin/scripts/sam-t99.conf @@@@ hmmscore /projects/compbio/tmp/score-target-12016/for-scorescript/split-tmp/alpha-29107/tmp29107 -i /projects/compbio/tmp/score-target-12016/for-scorescript/split-tmp/alpha-29107/T0108.t2k.mod -db /projects/compbio/data/pdb/all-protein -SW_score 2 -viterbi 0 -select_score 4 -Emax 40.0 Reading parameter file /projects/compbio/tmp/score-target-12016/for-scorescript/split-tmp/alpha-29107/T0108.t2k.mod /projects/compbio/tmp/score-target-12016/for-scorescript/split-tmp/alpha-29107/T0108.t2k.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16803/tmp.a2m SAM: hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) ....................... Average NLL-Simple NULL score: -10.107674 Database has 22382 sequences with 4866807 residues. @@@@ mv /projects/compbio/tmp/score-target-12016/for-scorescript/split-tmp/alpha-29107/op_temp29107 /projects/compbio/tmp/score-target-12016/score-target.op @@@@ rsh beta rm -rf /projects/compbio/tmp/score-target-12016/for-scorescript/split-tmp/alpha-29107 < /dev/null @@@@ rm -rf /projects/compbio/tmp/score-target-12016 /projects/compbio/bin/scripts/score-lib-t99 \ -targetseq T0108.seq \ -db "PDB and SCOP domains" \ -evalue 40.0 \ -hitsout T0108-t99.rdb Process ID: 7013 Command line args: targetseq: T0108.seq targeta2m: hitsoutfile: T0108-t99.rdb evalue: 40.0 db_option_str: PDB and SCOP domains db_ids_file: /projects/compbio/experiments/models.97/indexes/t99.ids db_seqfiles_list_ref: /projects/compbio/data/pdb/all-protein:/projects/compbio/experiments/test-set/fold-recognition-test/chothia-test/domains/domains.seqs db_aligndirs_list_ref: /projects/compbio/experiments/models.97/pdb:/projects/compbio4/experiments/models.97/domains entering get_template_model_for_db_search: template_id: 119l id: 119l alignment found: /projects/compbio/experiments/models.97/pdb/11/119l/nostruct-align/119l.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/11/119l/nostruct-align/119l.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/11/119l/nostruct-align/119l.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file ./tmp/tmp-build-weighted-model-titanic-28907/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.341125 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 12asA id: 12asA alignment found: /projects/compbio/experiments/models.97/pdb/12/12asA/nostruct-align/12asA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/12/12asA/nostruct-align/12asA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/12/12asA/nostruct-align/12asA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1277/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.687134 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 153l id: 153l alignment found: /projects/compbio/experiments/models.97/pdb/15/153l/nostruct-align/153l.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/15/153l/nostruct-align/153l.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/15/153l/nostruct-align/153l.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32612/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.195190 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 16pk id: 16pk alignment found: /projects/compbio/experiments/models.97/pdb/16/16pk/nostruct-align/16pk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/16/16pk/nostruct-align/16pk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/16/16pk/nostruct-align/16pk.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29881/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.954163 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 16vpA id: 16vpA alignment found: /projects/compbio/experiments/models.97/pdb/16/16vpA/nostruct-align/16vpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/16/16vpA/nostruct-align/16vpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/16/16vpA/nostruct-align/16vpA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15590/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.407166 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1914 id: 1914 alignment found: /projects/compbio/experiments/models.97/pdb/19/1914/nostruct-align/1914.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/19/1914/nostruct-align/1914.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/19/1914/nostruct-align/1914.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10425/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.055115 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 193l id: 193l alignment found: /projects/compbio/experiments/models.97/pdb/19/193l/nostruct-align/193l.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/19/193l/nostruct-align/193l.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/19/193l/nostruct-align/193l.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29135/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.455139 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 19hcA id: 19hcA alignment found: /projects/compbio/experiments/models.97/pdb/19/19hcA/nostruct-align/19hcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/19/19hcA/nostruct-align/19hcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/19/19hcA/nostruct-align/19hcA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4420/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.771179 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a02F id: 1a02F alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a02F/nostruct-align/1a02F.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a02F/nostruct-align/1a02F.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a02F/nostruct-align/1a02F.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7361/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.989136 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a02J id: 1a02J alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a02J/nostruct-align/1a02J.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a02J/nostruct-align/1a02J.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a02J/nostruct-align/1a02J.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14596/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -15.855164 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a02N id: 1a02N alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a02N/nostruct-align/1a02N.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a02N/nostruct-align/1a02N.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a02N/nostruct-align/1a02N.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21170/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.931152 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a04A id: 1a04A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a04A/nostruct-align/1a04A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a04A/nostruct-align/1a04A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a04A/nostruct-align/1a04A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3811/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.041199 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a0aA id: 1a0aA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a0aA/nostruct-align/1a0aA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a0aA/nostruct-align/1a0aA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a0aA/nostruct-align/1a0aA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12085/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.285156 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a0cA id: 1a0cA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a0cA/nostruct-align/1a0cA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a0cA/nostruct-align/1a0cA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a0cA/nostruct-align/1a0cA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15521/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.080139 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a0fA id: 1a0fA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a0fA/nostruct-align/1a0fA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a0fA/nostruct-align/1a0fA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a0fA/nostruct-align/1a0fA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5940/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.704102 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a0hA id: 1a0hA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a0hA/nostruct-align/1a0hA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a0hA/nostruct-align/1a0hA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a0hA/nostruct-align/1a0hA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12859/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.286133 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a0i id: 1a0i alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a0i/nostruct-align/1a0i.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a0i/nostruct-align/1a0i.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a0i/nostruct-align/1a0i.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26872/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.862183 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a0oD id: 1a0oD alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a0oD/nostruct-align/1a0oD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a0oD/nostruct-align/1a0oD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a0oD/nostruct-align/1a0oD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16806/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.545166 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a0p id: 1a0p alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a0p/nostruct-align/1a0p.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a0p/nostruct-align/1a0p.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a0p/nostruct-align/1a0p.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19406/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.292175 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a0tP id: 1a0tP alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a0tP/nostruct-align/1a0tP.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a0tP/nostruct-align/1a0tP.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a0tP/nostruct-align/1a0tP.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17034/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.179138 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a12A id: 1a12A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a12A/nostruct-align/1a12A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a12A/nostruct-align/1a12A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a12A/nostruct-align/1a12A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11235/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.069153 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a15A id: 1a15A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a15A/nostruct-align/1a15A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a15A/nostruct-align/1a15A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a15A/nostruct-align/1a15A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16465/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.764099 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a17 id: 1a17 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a17/nostruct-align/1a17.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a17/nostruct-align/1a17.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a17/nostruct-align/1a17.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14941/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.308105 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a1d id: 1a1d alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a1d/nostruct-align/1a1d.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a1d/nostruct-align/1a1d.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a1d/nostruct-align/1a1d.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25576/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.660156 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a1iA id: 1a1iA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a1iA/nostruct-align/1a1iA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a1iA/nostruct-align/1a1iA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a1iA/nostruct-align/1a1iA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14164/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.312195 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a1tA id: 1a1tA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a1tA/nostruct-align/1a1tA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a1tA/nostruct-align/1a1tA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a1tA/nostruct-align/1a1tA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12208/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.953125 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a1w id: 1a1w alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a1w/nostruct-align/1a1w.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a1w/nostruct-align/1a1w.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a1w/nostruct-align/1a1w.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26789/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.502136 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a1x id: 1a1x alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a1x/nostruct-align/1a1x.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a1x/nostruct-align/1a1x.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a1x/nostruct-align/1a1x.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13366/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.679138 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a1yE id: 1a1yE alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a1yE/nostruct-align/1a1yE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a1yE/nostruct-align/1a1yE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a1yE/nostruct-align/1a1yE.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17300/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.925171 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a1yI id: 1a1yI alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a1yI/nostruct-align/1a1yI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a1yI/nostruct-align/1a1yI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a1yI/nostruct-align/1a1yI.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22100/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.127197 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a1z id: 1a1z alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a1z/nostruct-align/1a1z.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a1z/nostruct-align/1a1z.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a1z/nostruct-align/1a1z.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-382/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.542175 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a26 id: 1a26 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a26/nostruct-align/1a26.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a26/nostruct-align/1a26.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a26/nostruct-align/1a26.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24922/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.564148 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a28A id: 1a28A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a28A/nostruct-align/1a28A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a28A/nostruct-align/1a28A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a28A/nostruct-align/1a28A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3905/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.881165 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a2pA id: 1a2pA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a2pA/nostruct-align/1a2pA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a2pA/nostruct-align/1a2pA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a2pA/nostruct-align/1a2pA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6792/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.175171 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a2vA id: 1a2vA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a2vA/nostruct-align/1a2vA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a2vA/nostruct-align/1a2vA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a2vA/nostruct-align/1a2vA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20801/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.973145 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a2xB id: 1a2xB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a2xB/nostruct-align/1a2xB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a2xB/nostruct-align/1a2xB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a2xB/nostruct-align/1a2xB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15191/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.293152 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a2yB id: 1a2yB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a2yB/nostruct-align/1a2yB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a2yB/nostruct-align/1a2yB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a2yB/nostruct-align/1a2yB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29453/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.350159 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a2zA id: 1a2zA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a2zA/nostruct-align/1a2zA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a2zA/nostruct-align/1a2zA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a2zA/nostruct-align/1a2zA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26569/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.619141 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a32 id: 1a32 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a32/nostruct-align/1a32.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a32/nostruct-align/1a32.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a32/nostruct-align/1a32.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25509/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.484131 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a34A id: 1a34A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a34A/nostruct-align/1a34A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a34A/nostruct-align/1a34A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a34A/nostruct-align/1a34A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23165/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.687195 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a36A id: 1a36A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a36A/nostruct-align/1a36A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a36A/nostruct-align/1a36A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a36A/nostruct-align/1a36A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25252/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.581116 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a3aA id: 1a3aA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a3aA/nostruct-align/1a3aA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a3aA/nostruct-align/1a3aA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a3aA/nostruct-align/1a3aA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24273/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.451111 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a3aC id: 1a3aC alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a3aC/nostruct-align/1a3aC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a3aC/nostruct-align/1a3aC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a3aC/nostruct-align/1a3aC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11505/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.418152 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a3c id: 1a3c alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a3c/nostruct-align/1a3c.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a3c/nostruct-align/1a3c.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a3c/nostruct-align/1a3c.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24708/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.265198 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a3h id: 1a3h alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a3h/nostruct-align/1a3h.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a3h/nostruct-align/1a3h.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a3h/nostruct-align/1a3h.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6922/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.415161 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a3k id: 1a3k alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a3k/nostruct-align/1a3k.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a3k/nostruct-align/1a3k.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a3k/nostruct-align/1a3k.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15848/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.950134 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a3lH id: 1a3lH alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a3lH/nostruct-align/1a3lH.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a3lH/nostruct-align/1a3lH.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a3lH/nostruct-align/1a3lH.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21407/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.555176 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a3lL id: 1a3lL alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a3lL/nostruct-align/1a3lL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a3lL/nostruct-align/1a3lL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a3lL/nostruct-align/1a3lL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30026/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.615173 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a3qA id: 1a3qA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a3qA/nostruct-align/1a3qA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a3qA/nostruct-align/1a3qA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a3qA/nostruct-align/1a3qA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9932/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.857178 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a41 id: 1a41 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a41/nostruct-align/1a41.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a41/nostruct-align/1a41.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a41/nostruct-align/1a41.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28549/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.203125 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a44 id: 1a44 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a44/nostruct-align/1a44.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a44/nostruct-align/1a44.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a44/nostruct-align/1a44.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13606/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.690186 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a48 id: 1a48 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a48/nostruct-align/1a48.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a48/nostruct-align/1a48.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a48/nostruct-align/1a48.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25899/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.329163 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a49A id: 1a49A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a49A/nostruct-align/1a49A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a49A/nostruct-align/1a49A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a49A/nostruct-align/1a49A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15921/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.766174 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a4iA id: 1a4iA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a4iA/nostruct-align/1a4iA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a4iA/nostruct-align/1a4iA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a4iA/nostruct-align/1a4iA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15078/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.383118 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a4iB id: 1a4iB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a4iB/nostruct-align/1a4iB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a4iB/nostruct-align/1a4iB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a4iB/nostruct-align/1a4iB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10530/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.355164 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a4mA id: 1a4mA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a4mA/nostruct-align/1a4mA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a4mA/nostruct-align/1a4mA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a4mA/nostruct-align/1a4mA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24256/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.401184 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a4sA id: 1a4sA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a4sA/nostruct-align/1a4sA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a4sA/nostruct-align/1a4sA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a4sA/nostruct-align/1a4sA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14865/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.516174 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a4uA id: 1a4uA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a4uA/nostruct-align/1a4uA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a4uA/nostruct-align/1a4uA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a4uA/nostruct-align/1a4uA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29376/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.145142 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a4yA id: 1a4yA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a4yA/nostruct-align/1a4yA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a4yA/nostruct-align/1a4yA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a4yA/nostruct-align/1a4yA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10973/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.904114 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a4yB id: 1a4yB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a4yB/nostruct-align/1a4yB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a4yB/nostruct-align/1a4yB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a4yB/nostruct-align/1a4yB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14009/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.765137 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a53 id: 1a53 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a53/nostruct-align/1a53.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a53/nostruct-align/1a53.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a53/nostruct-align/1a53.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6282/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.170105 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a58 id: 1a58 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a58/nostruct-align/1a58.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a58/nostruct-align/1a58.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a58/nostruct-align/1a58.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14135/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.920105 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a5j id: 1a5j alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a5j/nostruct-align/1a5j.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a5j/nostruct-align/1a5j.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a5j/nostruct-align/1a5j.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-28952/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.110168 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a5r id: 1a5r alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a5r/nostruct-align/1a5r.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a5r/nostruct-align/1a5r.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a5r/nostruct-align/1a5r.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-29987/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.398132 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a5t id: 1a5t alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a5t/nostruct-align/1a5t.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a5t/nostruct-align/1a5t.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a5t/nostruct-align/1a5t.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24553/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.627197 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a62 id: 1a62 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a62/nostruct-align/1a62.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a62/nostruct-align/1a62.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a62/nostruct-align/1a62.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-32478/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.289124 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a65A id: 1a65A get_template_model_for_db_search: no alignment found entering get_template_model_for_db_search: template_id: 1a68 id: 1a68 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a68/nostruct-align/1a68.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a68/nostruct-align/1a68.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a68/nostruct-align/1a68.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22909/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.831177 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a6bB id: 1a6bB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6bB/nostruct-align/1a6bB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6bB/nostruct-align/1a6bB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a6bB/nostruct-align/1a6bB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1882/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.223145 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a6cA id: 1a6cA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6cA/nostruct-align/1a6cA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6cA/nostruct-align/1a6cA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a6cA/nostruct-align/1a6cA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8971/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.091125 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a6dA id: 1a6dA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6dA/nostruct-align/1a6dA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6dA/nostruct-align/1a6dA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a6dA/nostruct-align/1a6dA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25869/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.081177 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a6f id: 1a6f alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6f/nostruct-align/1a6f.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6f/nostruct-align/1a6f.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a6f/nostruct-align/1a6f.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22877/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.635132 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a6jA id: 1a6jA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6jA/nostruct-align/1a6jA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6jA/nostruct-align/1a6jA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a6jA/nostruct-align/1a6jA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2793/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.487122 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a6l id: 1a6l alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6l/nostruct-align/1a6l.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6l/nostruct-align/1a6l.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a6l/nostruct-align/1a6l.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15406/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.971130 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a6m id: 1a6m alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6m/nostruct-align/1a6m.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6m/nostruct-align/1a6m.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a6m/nostruct-align/1a6m.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-453/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.517151 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a6o id: 1a6o alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6o/nostruct-align/1a6o.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6o/nostruct-align/1a6o.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a6o/nostruct-align/1a6o.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9696/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.048157 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a6q id: 1a6q alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6q/nostruct-align/1a6q.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6q/nostruct-align/1a6q.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a6q/nostruct-align/1a6q.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24844/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.285156 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a6s id: 1a6s alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6s/nostruct-align/1a6s.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6s/nostruct-align/1a6s.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a6s/nostruct-align/1a6s.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25271/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.832092 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a73A id: 1a73A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a73A/nostruct-align/1a73A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a73A/nostruct-align/1a73A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a73A/nostruct-align/1a73A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8775/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.978149 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a75A id: 1a75A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a75A/nostruct-align/1a75A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a75A/nostruct-align/1a75A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a75A/nostruct-align/1a75A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32597/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.484131 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a76 id: 1a76 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a76/nostruct-align/1a76.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a76/nostruct-align/1a76.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a76/nostruct-align/1a76.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32683/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.690186 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a78A id: 1a78A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a78A/nostruct-align/1a78A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a78A/nostruct-align/1a78A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a78A/nostruct-align/1a78A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8571/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.865173 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a79A id: 1a79A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a79A/nostruct-align/1a79A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a79A/nostruct-align/1a79A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a79A/nostruct-align/1a79A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9566/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.277100 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a7aA id: 1a7aA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a7aA/nostruct-align/1a7aA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a7aA/nostruct-align/1a7aA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a7aA/nostruct-align/1a7aA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10509/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.394104 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a7cA id: 1a7cA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a7cA/nostruct-align/1a7cA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a7cA/nostruct-align/1a7cA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a7cA/nostruct-align/1a7cA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24407/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.595154 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a7j id: 1a7j alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a7j/nostruct-align/1a7j.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a7j/nostruct-align/1a7j.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a7j/nostruct-align/1a7j.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19837/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.190125 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a7s id: 1a7s alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a7s/nostruct-align/1a7s.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a7s/nostruct-align/1a7s.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a7s/nostruct-align/1a7s.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7438/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.468140 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a7tA id: 1a7tA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a7tA/nostruct-align/1a7tA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a7tA/nostruct-align/1a7tA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a7tA/nostruct-align/1a7tA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18315/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.154175 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a7w id: 1a7w alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a7w/nostruct-align/1a7w.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a7w/nostruct-align/1a7w.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a7w/nostruct-align/1a7w.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2197/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.624146 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a81A id: 1a81A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a81A/nostruct-align/1a81A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a81A/nostruct-align/1a81A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a81A/nostruct-align/1a81A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9636/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.975159 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a87 id: 1a87 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a87/nostruct-align/1a87.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a87/nostruct-align/1a87.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a87/nostruct-align/1a87.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11297/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.833130 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a88A id: 1a88A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a88A/nostruct-align/1a88A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a88A/nostruct-align/1a88A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a88A/nostruct-align/1a88A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31764/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.234131 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a8b id: 1a8b alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8b/nostruct-align/1a8b.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8b/nostruct-align/1a8b.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a8b/nostruct-align/1a8b.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9015/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.245178 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a8d id: 1a8d alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8d/nostruct-align/1a8d.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8d/nostruct-align/1a8d.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a8d/nostruct-align/1a8d.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20084/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.477173 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a8e id: 1a8e alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8e/nostruct-align/1a8e.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8e/nostruct-align/1a8e.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a8e/nostruct-align/1a8e.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28623/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.931091 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a8h id: 1a8h alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8h/nostruct-align/1a8h.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8h/nostruct-align/1a8h.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a8h/nostruct-align/1a8h.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22246/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.460144 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a8i id: 1a8i alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8i/nostruct-align/1a8i.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8i/nostruct-align/1a8i.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a8i/nostruct-align/1a8i.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11534/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.714111 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a8l id: 1a8l alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8l/nostruct-align/1a8l.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8l/nostruct-align/1a8l.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a8l/nostruct-align/1a8l.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16821/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.053162 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a8o id: 1a8o alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8o/nostruct-align/1a8o.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8o/nostruct-align/1a8o.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a8o/nostruct-align/1a8o.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27705/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.020203 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a8q id: 1a8q alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8q/nostruct-align/1a8q.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8q/nostruct-align/1a8q.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a8q/nostruct-align/1a8q.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20865/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.162170 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a8rA id: 1a8rA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8rA/nostruct-align/1a8rA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8rA/nostruct-align/1a8rA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a8rA/nostruct-align/1a8rA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14474/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.609192 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a8vA id: 1a8vA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8vA/nostruct-align/1a8vA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8vA/nostruct-align/1a8vA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a8vA/nostruct-align/1a8vA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13539/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.296143 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a8y id: 1a8y alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8y/nostruct-align/1a8y.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8y/nostruct-align/1a8y.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a8y/nostruct-align/1a8y.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6378/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.694153 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a91 id: 1a91 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a91/nostruct-align/1a91.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a91/nostruct-align/1a91.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a91/nostruct-align/1a91.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29150/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.368103 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a92A id: 1a92A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a92A/nostruct-align/1a92A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a92A/nostruct-align/1a92A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a92A/nostruct-align/1a92A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13749/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.089111 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a93A id: 1a93A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a93A/nostruct-align/1a93A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a93A/nostruct-align/1a93A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a93A/nostruct-align/1a93A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6558/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.759155 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a93B id: 1a93B alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a93B/nostruct-align/1a93B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a93B/nostruct-align/1a93B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a93B/nostruct-align/1a93B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16678/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.246155 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a9nA id: 1a9nA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a9nA/nostruct-align/1a9nA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a9nA/nostruct-align/1a9nA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a9nA/nostruct-align/1a9nA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15622/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.797180 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a9v id: 1a9v alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a9v/nostruct-align/1a9v.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a9v/nostruct-align/1a9v.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a9v/nostruct-align/1a9v.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6491/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.028137 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a9xA id: 1a9xA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a9xA/nostruct-align/1a9xA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a9xA/nostruct-align/1a9xA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a9xA/nostruct-align/1a9xA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2969/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.530151 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1a9xB id: 1a9xB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a9xB/nostruct-align/1a9xB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a9xB/nostruct-align/1a9xB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1a9xB/nostruct-align/1a9xB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13555/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.155151 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aa0 id: 1aa0 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aa0/nostruct-align/1aa0.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aa0/nostruct-align/1aa0.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aa0/nostruct-align/1aa0.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14122/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.849121 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aa7A id: 1aa7A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aa7A/nostruct-align/1aa7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aa7A/nostruct-align/1aa7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aa7A/nostruct-align/1aa7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18483/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.372192 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aa8A id: 1aa8A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aa8A/nostruct-align/1aa8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aa8A/nostruct-align/1aa8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aa8A/nostruct-align/1aa8A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26608/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.611206 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aab id: 1aab alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aab/nostruct-align/1aab.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aab/nostruct-align/1aab.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aab/nostruct-align/1aab.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24719/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.583130 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aac id: 1aac alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aac/nostruct-align/1aac.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aac/nostruct-align/1aac.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aac/nostruct-align/1aac.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7660/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.532104 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aaf id: 1aaf alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aaf/nostruct-align/1aaf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aaf/nostruct-align/1aaf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aaf/nostruct-align/1aaf.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-9090/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.948181 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aaj id: 1aaj alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aaj/nostruct-align/1aaj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aaj/nostruct-align/1aaj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aaj/nostruct-align/1aaj.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-3219/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.553162 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aak id: 1aak alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aak/nostruct-align/1aak.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aak/nostruct-align/1aak.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aak/nostruct-align/1aak.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8716/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.731140 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aapA id: 1aapA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aapA/nostruct-align/1aapA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aapA/nostruct-align/1aapA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aapA/nostruct-align/1aapA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31177/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.720154 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aayA id: 1aayA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aayA/nostruct-align/1aayA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aayA/nostruct-align/1aayA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aayA/nostruct-align/1aayA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7447/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.248169 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ab3 id: 1ab3 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ab3/nostruct-align/1ab3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ab3/nostruct-align/1ab3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ab3/nostruct-align/1ab3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4560/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.501160 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ab4 id: 1ab4 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ab4/nostruct-align/1ab4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ab4/nostruct-align/1ab4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ab4/nostruct-align/1ab4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5938/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.602112 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ab8A id: 1ab8A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ab8A/nostruct-align/1ab8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ab8A/nostruct-align/1ab8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ab8A/nostruct-align/1ab8A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28896/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.171143 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aba id: 1aba alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aba/nostruct-align/1aba.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aba/nostruct-align/1aba.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aba/nostruct-align/1aba.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14430/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.654175 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aboA id: 1aboA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aboA/nostruct-align/1aboA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aboA/nostruct-align/1aboA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aboA/nostruct-align/1aboA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23663/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.861145 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1abrA id: 1abrA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1abrA/nostruct-align/1abrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1abrA/nostruct-align/1abrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1abrA/nostruct-align/1abrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15213/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.778137 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1abrB id: 1abrB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1abrB/nostruct-align/1abrB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1abrB/nostruct-align/1abrB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1abrB/nostruct-align/1abrB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14409/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.430176 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1abrB_1 id: 1abrB_1 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1abrB_1/nostruct-align/1abrB_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1abrB_1/nostruct-align/1abrB_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1abrB_1/nostruct-align/1abrB_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8127/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.431152 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1abrB_2 id: 1abrB_2 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1abrB_2/nostruct-align/1abrB_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1abrB_2/nostruct-align/1abrB_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1abrB_2/nostruct-align/1abrB_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6930/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.541138 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1abv id: 1abv alignment found: /projects/compbio/experiments/models.97/pdb/1a/1abv/nostruct-align/1abv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1abv/nostruct-align/1abv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1abv/nostruct-align/1abv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20422/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.775146 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1abwA id: 1abwA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1abwA/nostruct-align/1abwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1abwA/nostruct-align/1abwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1abwA/nostruct-align/1abwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15697/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.862183 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1abz id: 1abz alignment found: /projects/compbio/experiments/models.97/pdb/1a/1abz/nostruct-align/1abz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1abz/nostruct-align/1abz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1abz/nostruct-align/1abz.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8008/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.772156 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ac5 id: 1ac5 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ac5/nostruct-align/1ac5.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ac5/nostruct-align/1ac5.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ac5/nostruct-align/1ac5.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8618/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.997131 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aca id: 1aca alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aca/nostruct-align/1aca.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aca/nostruct-align/1aca.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aca/nostruct-align/1aca.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30976/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.489136 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1acc id: 1acc alignment found: /projects/compbio/experiments/models.97/pdb/1a/1acc/nostruct-align/1acc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1acc/nostruct-align/1acc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1acc/nostruct-align/1acc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9040/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.932190 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1acf id: 1acf alignment found: /projects/compbio/experiments/models.97/pdb/1a/1acf/nostruct-align/1acf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1acf/nostruct-align/1acf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1acf/nostruct-align/1acf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24789/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.916138 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aco_1 id: 1aco_1 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1aco_1/nostruct-align/1aco_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1aco_1/nostruct-align/1aco_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1aco_1/nostruct-align/1aco_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31243/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.530151 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aco_2 id: 1aco_2 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1aco_2/nostruct-align/1aco_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1aco_2/nostruct-align/1aco_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1aco_2/nostruct-align/1aco_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19094/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.576172 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1acp id: 1acp alignment found: /projects/compbio/experiments/models.97/pdb/1a/1acp/nostruct-align/1acp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1acp/nostruct-align/1acp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1acp/nostruct-align/1acp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27722/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.828125 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1acz id: 1acz alignment found: /projects/compbio/experiments/models.97/pdb/1a/1acz/nostruct-align/1acz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1acz/nostruct-align/1acz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1acz/nostruct-align/1acz.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25009/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.321167 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ad2 id: 1ad2 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ad2/nostruct-align/1ad2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ad2/nostruct-align/1ad2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ad2/nostruct-align/1ad2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7132/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.342163 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ad3A id: 1ad3A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ad3A/nostruct-align/1ad3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ad3A/nostruct-align/1ad3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ad3A/nostruct-align/1ad3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17678/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.743164 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ad6 id: 1ad6 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ad6/nostruct-align/1ad6.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ad6/nostruct-align/1ad6.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ad6/nostruct-align/1ad6.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13262/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.230164 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1add id: 1add alignment found: /projects/compbio/experiments/models.97/pdb/1a/1add/nostruct-align/1add.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1add/nostruct-align/1add.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1add/nostruct-align/1add.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26170/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.338135 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1adeA id: 1adeA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1adeA/nostruct-align/1adeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1adeA/nostruct-align/1adeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1adeA/nostruct-align/1adeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-729/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.040161 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1adjA id: 1adjA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1adjA/nostruct-align/1adjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1adjA/nostruct-align/1adjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1adjA/nostruct-align/1adjA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18633/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.407166 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1adn id: 1adn alignment found: /projects/compbio/experiments/models.97/pdb/1a/1adn/nostruct-align/1adn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1adn/nostruct-align/1adn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1adn/nostruct-align/1adn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5701/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.862183 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1adoA id: 1adoA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1adoA/nostruct-align/1adoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1adoA/nostruct-align/1adoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1adoA/nostruct-align/1adoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10218/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.639160 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1adr id: 1adr alignment found: /projects/compbio/experiments/models.97/pdb/1a/1adr/nostruct-align/1adr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1adr/nostruct-align/1adr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1adr/nostruct-align/1adr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20841/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.585144 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ads id: 1ads alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ads/nostruct-align/1ads.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ads/nostruct-align/1ads.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ads/nostruct-align/1ads.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-2148/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.346191 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1adx id: 1adx alignment found: /projects/compbio/experiments/models.97/pdb/1a/1adx/nostruct-align/1adx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1adx/nostruct-align/1adx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1adx/nostruct-align/1adx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31601/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.411133 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ae9A id: 1ae9A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ae9A/nostruct-align/1ae9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ae9A/nostruct-align/1ae9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ae9A/nostruct-align/1ae9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8469/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.870117 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aep id: 1aep alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aep/nostruct-align/1aep.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aep/nostruct-align/1aep.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aep/nostruct-align/1aep.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file ./tmp/tmp-build-weighted-model-titanic-22676/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.730164 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aerA id: 1aerA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aerA/nostruct-align/1aerA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aerA/nostruct-align/1aerA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aerA/nostruct-align/1aerA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18421/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.975159 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1af7 id: 1af7 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1af7/nostruct-align/1af7.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1af7/nostruct-align/1af7.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1af7/nostruct-align/1af7.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5516/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.411133 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1afoA id: 1afoA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1afoA/nostruct-align/1afoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1afoA/nostruct-align/1afoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1afoA/nostruct-align/1afoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32401/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.471191 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1afp id: 1afp alignment found: /projects/compbio/experiments/models.97/pdb/1a/1afp/nostruct-align/1afp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1afp/nostruct-align/1afp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1afp/nostruct-align/1afp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1412/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.270142 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1afrA id: 1afrA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1afrA/nostruct-align/1afrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1afrA/nostruct-align/1afrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1afrA/nostruct-align/1afrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11306/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.256165 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1afwA id: 1afwA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1afwA/nostruct-align/1afwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1afwA/nostruct-align/1afwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1afwA/nostruct-align/1afwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24269/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.814148 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ag4 id: 1ag4 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ag4/nostruct-align/1ag4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ag4/nostruct-align/1ag4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ag4/nostruct-align/1ag4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30164/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.156128 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ag7 id: 1ag7 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ag7/nostruct-align/1ag7.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ag7/nostruct-align/1ag7.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ag7/nostruct-align/1ag7.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17827/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.090149 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ag9A id: 1ag9A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ag9A/nostruct-align/1ag9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ag9A/nostruct-align/1ag9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ag9A/nostruct-align/1ag9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3371/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.981140 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1agdA id: 1agdA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agdA/nostruct-align/1agdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agdA/nostruct-align/1agdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1agdA/nostruct-align/1agdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21188/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.987122 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1agdB id: 1agdB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agdB/nostruct-align/1agdB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agdB/nostruct-align/1agdB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1agdB/nostruct-align/1agdB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16692/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.469116 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1agg id: 1agg alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agg/nostruct-align/1agg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agg/nostruct-align/1agg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1agg/nostruct-align/1agg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/experiments/models.97/pdb/1a/1agg/nostruct-align/1agg.t99.a2m.gz SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.690125 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1agjA id: 1agjA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agjA/nostruct-align/1agjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agjA/nostruct-align/1agjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1agjA/nostruct-align/1agjA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21522/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.794128 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1agnA id: 1agnA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agnA/nostruct-align/1agnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agnA/nostruct-align/1agnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1agnA/nostruct-align/1agnA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28555/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.467102 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1agqA id: 1agqA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agqA/nostruct-align/1agqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agqA/nostruct-align/1agqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1agqA/nostruct-align/1agqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1635/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.176147 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1agqD id: 1agqD alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agqD/nostruct-align/1agqD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agqD/nostruct-align/1agqD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1agqD/nostruct-align/1agqD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3493/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.636108 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1agrE id: 1agrE alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agrE/nostruct-align/1agrE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agrE/nostruct-align/1agrE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1agrE/nostruct-align/1agrE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30108/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.757141 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1agrH id: 1agrH alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agrH/nostruct-align/1agrH.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agrH/nostruct-align/1agrH.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1agrH/nostruct-align/1agrH.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17041/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.674133 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1agx id: 1agx alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agx/nostruct-align/1agx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agx/nostruct-align/1agx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1agx/nostruct-align/1agx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25649/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.187134 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ah1 id: 1ah1 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ah1/nostruct-align/1ah1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ah1/nostruct-align/1ah1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ah1/nostruct-align/1ah1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30246/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.997131 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ah7 id: 1ah7 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ah7/nostruct-align/1ah7.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ah7/nostruct-align/1ah7.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ah7/nostruct-align/1ah7.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21194/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.526184 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ah9 id: 1ah9 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ah9/nostruct-align/1ah9.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ah9/nostruct-align/1ah9.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ah9/nostruct-align/1ah9.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21198/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.117188 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ahjB id: 1ahjB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ahjB/nostruct-align/1ahjB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ahjB/nostruct-align/1ahjB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ahjB/nostruct-align/1ahjB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25414/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.066162 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ahl id: 1ahl alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ahl/nostruct-align/1ahl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ahl/nostruct-align/1ahl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ahl/nostruct-align/1ahl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7067/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.916138 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ahm id: 1ahm alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ahm/nostruct-align/1ahm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ahm/nostruct-align/1ahm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ahm/nostruct-align/1ahm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16906/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.973145 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aho id: 1aho alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aho/nostruct-align/1aho.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aho/nostruct-align/1aho.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aho/nostruct-align/1aho.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32368/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.489136 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ahpA id: 1ahpA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ahpA/nostruct-align/1ahpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ahpA/nostruct-align/1ahpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ahpA/nostruct-align/1ahpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6445/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.996155 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ahsA id: 1ahsA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ahsA/nostruct-align/1ahsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ahsA/nostruct-align/1ahsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ahsA/nostruct-align/1ahsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1130/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.377136 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ahtH id: 1ahtH alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ahtH/nostruct-align/1ahtH.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ahtH/nostruct-align/1ahtH.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ahtH/nostruct-align/1ahtH.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23056/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.906189 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ahtL id: 1ahtL alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ahtL/nostruct-align/1ahtL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ahtL/nostruct-align/1ahtL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ahtL/nostruct-align/1ahtL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6916/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.705139 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ai7A id: 1ai7A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ai7A/nostruct-align/1ai7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ai7A/nostruct-align/1ai7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ai7A/nostruct-align/1ai7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32352/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.789185 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aie id: 1aie alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aie/nostruct-align/1aie.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aie/nostruct-align/1aie.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aie/nostruct-align/1aie.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17561/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.163147 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aihA id: 1aihA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aihA/nostruct-align/1aihA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aihA/nostruct-align/1aihA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aihA/nostruct-align/1aihA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28554/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.470154 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aijL id: 1aijL alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aijL/nostruct-align/1aijL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aijL/nostruct-align/1aijL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aijL/nostruct-align/1aijL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23707/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.174194 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aikC id: 1aikC alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aikC/nostruct-align/1aikC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aikC/nostruct-align/1aikC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aikC/nostruct-align/1aikC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30422/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.676147 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aikN id: 1aikN alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aikN/nostruct-align/1aikN.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aikN/nostruct-align/1aikN.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aikN/nostruct-align/1aikN.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30589/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.700134 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ail id: 1ail alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ail/nostruct-align/1ail.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ail/nostruct-align/1ail.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ail/nostruct-align/1ail.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7292/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.307129 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aim id: 1aim alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aim/nostruct-align/1aim.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aim/nostruct-align/1aim.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aim/nostruct-align/1aim.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16883/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.033142 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aipE id: 1aipE alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aipE/nostruct-align/1aipE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aipE/nostruct-align/1aipE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aipE/nostruct-align/1aipE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26096/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.058167 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1air id: 1air alignment found: /projects/compbio/experiments/models.97/pdb/1a/1air/nostruct-align/1air.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1air/nostruct-align/1air.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1air/nostruct-align/1air.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-937/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.899170 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aisB id: 1aisB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aisB/nostruct-align/1aisB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aisB/nostruct-align/1aisB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aisB/nostruct-align/1aisB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6754/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.777161 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aiu id: 1aiu alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aiu/nostruct-align/1aiu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aiu/nostruct-align/1aiu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aiu/nostruct-align/1aiu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28309/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.411133 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aiw id: 1aiw alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aiw/nostruct-align/1aiw.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aiw/nostruct-align/1aiw.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aiw/nostruct-align/1aiw.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21141/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.355164 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aizA id: 1aizA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aizA/nostruct-align/1aizA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aizA/nostruct-align/1aizA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aizA/nostruct-align/1aizA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16671/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.652100 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aj2 id: 1aj2 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aj2/nostruct-align/1aj2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aj2/nostruct-align/1aj2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aj2/nostruct-align/1aj2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13045/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.425171 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aj3 id: 1aj3 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aj3/nostruct-align/1aj3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aj3/nostruct-align/1aj3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aj3/nostruct-align/1aj3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-581/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.170166 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aj6 id: 1aj6 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aj6/nostruct-align/1aj6.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aj6/nostruct-align/1aj6.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aj6/nostruct-align/1aj6.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4439/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.236145 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aj8A id: 1aj8A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aj8A/nostruct-align/1aj8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aj8A/nostruct-align/1aj8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aj8A/nostruct-align/1aj8A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11613/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.313110 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ajj id: 1ajj alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ajj/nostruct-align/1ajj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ajj/nostruct-align/1ajj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ajj/nostruct-align/1ajj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10590/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.615173 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ajqA id: 1ajqA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ajqA/nostruct-align/1ajqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ajqA/nostruct-align/1ajqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ajqA/nostruct-align/1ajqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24991/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.300110 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ajqB id: 1ajqB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ajqB/nostruct-align/1ajqB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ajqB/nostruct-align/1ajqB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ajqB/nostruct-align/1ajqB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5688/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.782104 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ajsA id: 1ajsA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ajsA/nostruct-align/1ajsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ajsA/nostruct-align/1ajsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ajsA/nostruct-align/1ajsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28008/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.307129 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ajyA id: 1ajyA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ajyA/nostruct-align/1ajyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ajyA/nostruct-align/1ajyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ajyA/nostruct-align/1ajyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13446/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.951172 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ak0 id: 1ak0 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ak0/nostruct-align/1ak0.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ak0/nostruct-align/1ak0.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ak0/nostruct-align/1ak0.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11435/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.494141 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ak1 id: 1ak1 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ak1/nostruct-align/1ak1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ak1/nostruct-align/1ak1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ak1/nostruct-align/1ak1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28519/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.338135 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ak4C id: 1ak4C alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ak4C/nostruct-align/1ak4C.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ak4C/nostruct-align/1ak4C.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ak4C/nostruct-align/1ak4C.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31573/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.534180 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ak5 id: 1ak5 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ak5/nostruct-align/1ak5.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ak5/nostruct-align/1ak5.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ak5/nostruct-align/1ak5.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14562/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.656128 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ak7 id: 1ak7 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ak7/nostruct-align/1ak7.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ak7/nostruct-align/1ak7.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ak7/nostruct-align/1ak7.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29940/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.918152 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1akeA id: 1akeA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1akeA/nostruct-align/1akeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1akeA/nostruct-align/1akeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1akeA/nostruct-align/1akeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24081/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.842163 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1akhA id: 1akhA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1akhA/nostruct-align/1akhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1akhA/nostruct-align/1akhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1akhA/nostruct-align/1akhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21547/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.936157 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1akhB id: 1akhB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1akhB/nostruct-align/1akhB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1akhB/nostruct-align/1akhB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1akhB/nostruct-align/1akhB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27841/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.989136 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ako id: 1ako alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ako/nostruct-align/1ako.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ako/nostruct-align/1ako.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ako/nostruct-align/1ako.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25977/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.760132 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1akr id: 1akr alignment found: /projects/compbio/experiments/models.97/pdb/1a/1akr/nostruct-align/1akr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1akr/nostruct-align/1akr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1akr/nostruct-align/1akr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12514/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.169128 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aky id: 1aky alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aky/nostruct-align/1aky.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aky/nostruct-align/1aky.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aky/nostruct-align/1aky.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file ./tmp/tmp-build-weighted-model-titanic-29691/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.938171 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1akz id: 1akz alignment found: /projects/compbio/experiments/models.97/pdb/1a/1akz/nostruct-align/1akz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1akz/nostruct-align/1akz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1akz/nostruct-align/1akz.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19232/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.769165 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1al3 id: 1al3 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1al3/nostruct-align/1al3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1al3/nostruct-align/1al3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1al3/nostruct-align/1al3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8289/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.690125 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1alkA id: 1alkA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1alkA/nostruct-align/1alkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1alkA/nostruct-align/1alkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1alkA/nostruct-align/1alkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32299/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.799133 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1alo id: 1alo alignment found: /projects/compbio/experiments/models.97/pdb/1a/1alo/nostruct-align/1alo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1alo/nostruct-align/1alo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1alo/nostruct-align/1alo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30467/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.789185 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1alq id: 1alq alignment found: /projects/compbio/experiments/models.97/pdb/1a/1alq/nostruct-align/1alq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1alq/nostruct-align/1alq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1alq/nostruct-align/1alq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23374/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.276123 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1alu id: 1alu alignment found: /projects/compbio/experiments/models.97/pdb/1a/1alu/nostruct-align/1alu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1alu/nostruct-align/1alu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1alu/nostruct-align/1alu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3693/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.692139 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1alvA id: 1alvA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1alvA/nostruct-align/1alvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1alvA/nostruct-align/1alvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1alvA/nostruct-align/1alvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22546/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.334106 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aly id: 1aly alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aly/nostruct-align/1aly.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aly/nostruct-align/1aly.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aly/nostruct-align/1aly.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28274/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.323181 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1am2 id: 1am2 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1am2/nostruct-align/1am2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1am2/nostruct-align/1am2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1am2/nostruct-align/1am2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20009/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.629150 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1am7A id: 1am7A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1am7A/nostruct-align/1am7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1am7A/nostruct-align/1am7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1am7A/nostruct-align/1am7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31360/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.854126 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1am9A id: 1am9A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1am9A/nostruct-align/1am9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1am9A/nostruct-align/1am9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1am9A/nostruct-align/1am9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27389/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.194153 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1amf id: 1amf alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amf/nostruct-align/1amf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amf/nostruct-align/1amf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1amf/nostruct-align/1amf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28983/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.078125 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1amg_1 id: 1amg_1 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1amg_1/nostruct-align/1amg_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1amg_1/nostruct-align/1amg_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1amg_1/nostruct-align/1amg_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13304/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.448120 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1amg_2 id: 1amg_2 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1amg_2/nostruct-align/1amg_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1amg_2/nostruct-align/1amg_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1amg_2/nostruct-align/1amg_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22758/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.512146 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1amj id: 1amj alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amj/nostruct-align/1amj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amj/nostruct-align/1amj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1amj/nostruct-align/1amj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16589/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.402100 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1amk id: 1amk alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amk/nostruct-align/1amk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amk/nostruct-align/1amk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1amk/nostruct-align/1amk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13445/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.967102 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aml id: 1aml alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aml/nostruct-align/1aml.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aml/nostruct-align/1aml.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aml/nostruct-align/1aml.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27069/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.510132 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1amm id: 1amm alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amm/nostruct-align/1amm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amm/nostruct-align/1amm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1amm/nostruct-align/1amm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25095/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.209167 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1amoA id: 1amoA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amoA/nostruct-align/1amoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amoA/nostruct-align/1amoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1amoA/nostruct-align/1amoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21411/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.926147 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1amp id: 1amp alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amp/nostruct-align/1amp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amp/nostruct-align/1amp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1amp/nostruct-align/1amp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1908/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.028137 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1amtA id: 1amtA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amtA/nostruct-align/1amtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amtA/nostruct-align/1amtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1amtA/nostruct-align/1amtA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23943/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.596130 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1amuA id: 1amuA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amuA/nostruct-align/1amuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amuA/nostruct-align/1amuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1amuA/nostruct-align/1amuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19278/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.587158 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1amx id: 1amx alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amx/nostruct-align/1amx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amx/nostruct-align/1amx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1amx/nostruct-align/1amx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5456/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.155151 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1amy_1 id: 1amy_1 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1amy_1/nostruct-align/1amy_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1amy_1/nostruct-align/1amy_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1amy_1/nostruct-align/1amy_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24652/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.195129 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1amy_2 id: 1amy_2 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1amy_2/nostruct-align/1amy_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1amy_2/nostruct-align/1amy_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1amy_2/nostruct-align/1amy_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12341/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.824158 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1an2A id: 1an2A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1an2A/nostruct-align/1an2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1an2A/nostruct-align/1an2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1an2A/nostruct-align/1an2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13547/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.667114 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1an4A id: 1an4A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1an4A/nostruct-align/1an4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1an4A/nostruct-align/1an4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1an4A/nostruct-align/1an4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11486/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.826172 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1an7A id: 1an7A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1an7A/nostruct-align/1an7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1an7A/nostruct-align/1an7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1an7A/nostruct-align/1an7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25277/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.290161 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1an8 id: 1an8 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1an8/nostruct-align/1an8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1an8/nostruct-align/1an8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1an8/nostruct-align/1an8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22376/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.616150 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1an9A id: 1an9A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1an9A/nostruct-align/1an9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1an9A/nostruct-align/1an9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1an9A/nostruct-align/1an9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18791/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.861145 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1anf id: 1anf alignment found: /projects/compbio/experiments/models.97/pdb/1a/1anf/nostruct-align/1anf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1anf/nostruct-align/1anf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1anf/nostruct-align/1anf.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22430/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.247131 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ans id: 1ans alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ans/nostruct-align/1ans.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ans/nostruct-align/1ans.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ans/nostruct-align/1ans.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27342/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.875122 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1anv id: 1anv alignment found: /projects/compbio/experiments/models.97/pdb/1a/1anv/nostruct-align/1anv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1anv/nostruct-align/1anv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1anv/nostruct-align/1anv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20232/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.661133 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ao6A id: 1ao6A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ao6A/nostruct-align/1ao6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ao6A/nostruct-align/1ao6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ao6A/nostruct-align/1ao6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8562/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.563171 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aoa id: 1aoa alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoa/nostruct-align/1aoa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoa/nostruct-align/1aoa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoa/nostruct-align/1aoa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19064/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.747131 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aocA id: 1aocA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aocA/nostruct-align/1aocA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aocA/nostruct-align/1aocA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aocA/nostruct-align/1aocA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10576/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.483093 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aoeA id: 1aoeA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoeA/nostruct-align/1aoeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoeA/nostruct-align/1aoeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoeA/nostruct-align/1aoeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19302/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.332153 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aohA id: 1aohA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aohA/nostruct-align/1aohA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aohA/nostruct-align/1aohA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aohA/nostruct-align/1aohA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10698/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.809143 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aohB id: 1aohB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aohB/nostruct-align/1aohB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aohB/nostruct-align/1aohB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aohB/nostruct-align/1aohB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21992/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.344177 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aoiA id: 1aoiA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoiA/nostruct-align/1aoiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoiA/nostruct-align/1aoiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoiA/nostruct-align/1aoiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21544/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.667175 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aoiB id: 1aoiB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoiB/nostruct-align/1aoiB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoiB/nostruct-align/1aoiB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoiB/nostruct-align/1aoiB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14525/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.647156 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aoiC id: 1aoiC alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoiC/nostruct-align/1aoiC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoiC/nostruct-align/1aoiC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoiC/nostruct-align/1aoiC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32287/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.395142 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aoiD id: 1aoiD alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoiD/nostruct-align/1aoiD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoiD/nostruct-align/1aoiD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoiD/nostruct-align/1aoiD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31992/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.376099 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aoiF id: 1aoiF alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoiF/nostruct-align/1aoiF.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoiF/nostruct-align/1aoiF.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoiF/nostruct-align/1aoiF.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5590/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.832153 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aoiG id: 1aoiG alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoiG/nostruct-align/1aoiG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoiG/nostruct-align/1aoiG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoiG/nostruct-align/1aoiG.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18841/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.159180 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aojA id: 1aojA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aojA/nostruct-align/1aojA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aojA/nostruct-align/1aojA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aojA/nostruct-align/1aojA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30331/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.569153 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aol id: 1aol alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aol/nostruct-align/1aol.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aol/nostruct-align/1aol.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aol/nostruct-align/1aol.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30316/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.918152 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aoo id: 1aoo alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoo/nostruct-align/1aoo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoo/nostruct-align/1aoo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoo/nostruct-align/1aoo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17788/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.024170 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aop id: 1aop alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aop/nostruct-align/1aop.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aop/nostruct-align/1aop.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aop/nostruct-align/1aop.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26307/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.117188 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aoqA id: 1aoqA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoqA/nostruct-align/1aoqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoqA/nostruct-align/1aoqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoqA/nostruct-align/1aoqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3544/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.652161 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aorA id: 1aorA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aorA/nostruct-align/1aorA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aorA/nostruct-align/1aorA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aorA/nostruct-align/1aorA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11103/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.259155 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aorA_1 id: 1aorA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1aorA_1/nostruct-align/1aorA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1aorA_1/nostruct-align/1aorA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1aorA_1/nostruct-align/1aorA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20749/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.634155 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aorA_2 id: 1aorA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1aorA_2/nostruct-align/1aorA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1aorA_2/nostruct-align/1aorA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1aorA_2/nostruct-align/1aorA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1404/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.253113 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aoxA id: 1aoxA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoxA/nostruct-align/1aoxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoxA/nostruct-align/1aoxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoxA/nostruct-align/1aoxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13884/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.069153 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aoy id: 1aoy alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoy/nostruct-align/1aoy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoy/nostruct-align/1aoy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aoy/nostruct-align/1aoy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15570/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.761169 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aozA id: 1aozA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aozA/nostruct-align/1aozA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aozA/nostruct-align/1aozA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aozA/nostruct-align/1aozA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12490/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.261169 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aozA_1 id: 1aozA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1aozA_1/nostruct-align/1aozA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1aozA_1/nostruct-align/1aozA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1aozA_1/nostruct-align/1aozA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16410/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.821167 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aozA_2 id: 1aozA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1aozA_2/nostruct-align/1aozA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1aozA_2/nostruct-align/1aozA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1aozA_2/nostruct-align/1aozA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9900/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.505188 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aozA_3 id: 1aozA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1aozA_3/nostruct-align/1aozA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1aozA_3/nostruct-align/1aozA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1aozA_3/nostruct-align/1aozA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-779/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.420166 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ap0 id: 1ap0 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ap0/nostruct-align/1ap0.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ap0/nostruct-align/1ap0.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ap0/nostruct-align/1ap0.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6126/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.367126 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ap7 id: 1ap7 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ap7/nostruct-align/1ap7.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ap7/nostruct-align/1ap7.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ap7/nostruct-align/1ap7.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6344/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.967102 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ap8 id: 1ap8 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ap8/nostruct-align/1ap8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ap8/nostruct-align/1ap8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ap8/nostruct-align/1ap8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30421/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.529175 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1apa id: 1apa alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apa/nostruct-align/1apa.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apa/nostruct-align/1apa.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1apa/nostruct-align/1apa.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file ./tmp/tmp-build-weighted-model-titanic-29216/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.935120 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1apf id: 1apf alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apf/nostruct-align/1apf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apf/nostruct-align/1apf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1apf/nostruct-align/1apf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22983/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.940125 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1apj id: 1apj alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apj/nostruct-align/1apj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apj/nostruct-align/1apj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1apj/nostruct-align/1apj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15916/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.009155 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1apmE id: 1apmE alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apmE/nostruct-align/1apmE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apmE/nostruct-align/1apmE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1apmE/nostruct-align/1apmE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4239/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.208130 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1apmI id: 1apmI alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apmI/nostruct-align/1apmI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apmI/nostruct-align/1apmI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1apmI/nostruct-align/1apmI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11901/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.346191 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1apo id: 1apo alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apo/nostruct-align/1apo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apo/nostruct-align/1apo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1apo/nostruct-align/1apo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31402/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.669128 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1apq id: 1apq alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apq/nostruct-align/1apq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apq/nostruct-align/1apq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1apq/nostruct-align/1apq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32579/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.240112 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aps id: 1aps alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aps/nostruct-align/1aps.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aps/nostruct-align/1aps.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aps/nostruct-align/1aps.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-26746/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.449158 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1apyA id: 1apyA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apyA/nostruct-align/1apyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apyA/nostruct-align/1apyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1apyA/nostruct-align/1apyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21837/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.286133 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1apyB id: 1apyB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apyB/nostruct-align/1apyB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apyB/nostruct-align/1apyB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1apyB/nostruct-align/1apyB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31186/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.743164 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aq0A id: 1aq0A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aq0A/nostruct-align/1aq0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aq0A/nostruct-align/1aq0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aq0A/nostruct-align/1aq0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20400/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.179138 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aq5A id: 1aq5A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aq5A/nostruct-align/1aq5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aq5A/nostruct-align/1aq5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aq5A/nostruct-align/1aq5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10169/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.327148 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aq6A id: 1aq6A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aq6A/nostruct-align/1aq6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aq6A/nostruct-align/1aq6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aq6A/nostruct-align/1aq6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7679/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.982178 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aqb id: 1aqb alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aqb/nostruct-align/1aqb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aqb/nostruct-align/1aqb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aqb/nostruct-align/1aqb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4788/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.154114 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aqm id: 1aqm alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aqm/nostruct-align/1aqm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aqm/nostruct-align/1aqm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aqm/nostruct-align/1aqm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29488/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.531189 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aqt id: 1aqt alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aqt/nostruct-align/1aqt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aqt/nostruct-align/1aqt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aqt/nostruct-align/1aqt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25645/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.681152 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aquA id: 1aquA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aquA/nostruct-align/1aquA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aquA/nostruct-align/1aquA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aquA/nostruct-align/1aquA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26768/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.391174 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aqzA id: 1aqzA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aqzA/nostruct-align/1aqzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aqzA/nostruct-align/1aqzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aqzA/nostruct-align/1aqzA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15067/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.761169 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aqzB id: 1aqzB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aqzB/nostruct-align/1aqzB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aqzB/nostruct-align/1aqzB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aqzB/nostruct-align/1aqzB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6293/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.817200 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ar0A id: 1ar0A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ar0A/nostruct-align/1ar0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ar0A/nostruct-align/1ar0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ar0A/nostruct-align/1ar0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13965/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.341125 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1arb id: 1arb alignment found: /projects/compbio/experiments/models.97/pdb/1a/1arb/nostruct-align/1arb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1arb/nostruct-align/1arb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1arb/nostruct-align/1arb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25982/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.031128 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ard id: 1ard alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ard/nostruct-align/1ard.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ard/nostruct-align/1ard.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ard/nostruct-align/1ard.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16080/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.517151 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ark id: 1ark alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ark/nostruct-align/1ark.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ark/nostruct-align/1ark.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ark/nostruct-align/1ark.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23529/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.588135 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1art id: 1art alignment found: /projects/compbio/experiments/models.97/pdb/1a/1art/nostruct-align/1art.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1art/nostruct-align/1art.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1art/nostruct-align/1art.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4132/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.280151 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aru id: 1aru alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aru/nostruct-align/1aru.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aru/nostruct-align/1aru.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aru/nostruct-align/1aru.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32250/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.578125 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1arv id: 1arv alignment found: /projects/compbio/experiments/models.97/pdb/1a/1arv/nostruct-align/1arv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1arv/nostruct-align/1arv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1arv/nostruct-align/1arv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10937/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.578125 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1arzC id: 1arzC alignment found: /projects/compbio/experiments/models.97/pdb/1a/1arzC/nostruct-align/1arzC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1arzC/nostruct-align/1arzC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1arzC/nostruct-align/1arzC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32436/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.518127 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1as4B id: 1as4B alignment found: /projects/compbio/experiments/models.97/pdb/1a/1as4B/nostruct-align/1as4B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1as4B/nostruct-align/1as4B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1as4B/nostruct-align/1as4B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32617/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.139099 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1as8A id: 1as8A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1as8A/nostruct-align/1as8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1as8A/nostruct-align/1as8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1as8A/nostruct-align/1as8A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23131/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.884094 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ash id: 1ash alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ash/nostruct-align/1ash.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ash/nostruct-align/1ash.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ash/nostruct-align/1ash.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8232/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.766174 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ass id: 1ass alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ass/nostruct-align/1ass.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ass/nostruct-align/1ass.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ass/nostruct-align/1ass.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16565/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.177124 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ast id: 1ast alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ast/nostruct-align/1ast.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ast/nostruct-align/1ast.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ast/nostruct-align/1ast.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19215/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.814148 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1asu id: 1asu alignment found: /projects/compbio/experiments/models.97/pdb/1a/1asu/nostruct-align/1asu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1asu/nostruct-align/1asu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1asu/nostruct-align/1asu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7184/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.780151 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1asx id: 1asx alignment found: /projects/compbio/experiments/models.97/pdb/1a/1asx/nostruct-align/1asx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1asx/nostruct-align/1asx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1asx/nostruct-align/1asx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1416/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.234131 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1asyA id: 1asyA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1asyA/nostruct-align/1asyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1asyA/nostruct-align/1asyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1asyA/nostruct-align/1asyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32595/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.327148 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1asyA_1 id: 1asyA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1asyA_1/nostruct-align/1asyA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1asyA_1/nostruct-align/1asyA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1asyA_1/nostruct-align/1asyA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4662/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.933105 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1asyA_2 id: 1asyA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1a/1asyA_2/nostruct-align/1asyA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1asyA_2/nostruct-align/1asyA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1a/1asyA_2/nostruct-align/1asyA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30619/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.394165 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aszB id: 1aszB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aszB/nostruct-align/1aszB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aszB/nostruct-align/1aszB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aszB/nostruct-align/1aszB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9904/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.327148 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1at0 id: 1at0 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1at0/nostruct-align/1at0.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1at0/nostruct-align/1at0.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1at0/nostruct-align/1at0.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30016/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.929138 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1at3A id: 1at3A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1at3A/nostruct-align/1at3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1at3A/nostruct-align/1at3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1at3A/nostruct-align/1at3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24313/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.909180 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ata id: 1ata alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ata/nostruct-align/1ata.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ata/nostruct-align/1ata.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ata/nostruct-align/1ata.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18154/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.359192 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1atg id: 1atg alignment found: /projects/compbio/experiments/models.97/pdb/1a/1atg/nostruct-align/1atg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1atg/nostruct-align/1atg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1atg/nostruct-align/1atg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2665/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.964172 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1atiA id: 1atiA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1atiA/nostruct-align/1atiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1atiA/nostruct-align/1atiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1atiA/nostruct-align/1atiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8065/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.318176 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1atiB id: 1atiB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1atiB/nostruct-align/1atiB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1atiB/nostruct-align/1atiB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1atiB/nostruct-align/1atiB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1866/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.961121 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1atlA id: 1atlA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1atlA/nostruct-align/1atlA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1atlA/nostruct-align/1atlA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1atlA/nostruct-align/1atlA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30665/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.625183 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1atx id: 1atx alignment found: /projects/compbio/experiments/models.97/pdb/1a/1atx/nostruct-align/1atx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1atx/nostruct-align/1atx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1atx/nostruct-align/1atx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8668/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.607178 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aty id: 1aty alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aty/nostruct-align/1aty.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aty/nostruct-align/1aty.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aty/nostruct-align/1aty.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10408/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.887146 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1atzA id: 1atzA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1atzA/nostruct-align/1atzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1atzA/nostruct-align/1atzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1atzA/nostruct-align/1atzA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1233/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.210144 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1atzB id: 1atzB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1atzB/nostruct-align/1atzB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1atzB/nostruct-align/1atzB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1atzB/nostruct-align/1atzB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15897/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.879150 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1au7A id: 1au7A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1au7A/nostruct-align/1au7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1au7A/nostruct-align/1au7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1au7A/nostruct-align/1au7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9876/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.353149 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aua id: 1aua alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aua/nostruct-align/1aua.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aua/nostruct-align/1aua.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aua/nostruct-align/1aua.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1107/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.716125 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aub id: 1aub alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aub/nostruct-align/1aub.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aub/nostruct-align/1aub.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aub/nostruct-align/1aub.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18190/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.748169 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1augA id: 1augA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1augA/nostruct-align/1augA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1augA/nostruct-align/1augA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1augA/nostruct-align/1augA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11823/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.142151 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1auiA id: 1auiA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auiA/nostruct-align/1auiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auiA/nostruct-align/1auiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1auiA/nostruct-align/1auiA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31186/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.635193 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1auiB id: 1auiB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auiB/nostruct-align/1auiB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auiB/nostruct-align/1auiB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1auiB/nostruct-align/1auiB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18755/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.574097 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1auk id: 1auk alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auk/nostruct-align/1auk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auk/nostruct-align/1auk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1auk/nostruct-align/1auk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25173/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.193176 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1auoA id: 1auoA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auoA/nostruct-align/1auoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auoA/nostruct-align/1auoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1auoA/nostruct-align/1auoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22207/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.116150 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1auq id: 1auq alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auq/nostruct-align/1auq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auq/nostruct-align/1auq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1auq/nostruct-align/1auq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22732/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.843140 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aurA id: 1aurA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aurA/nostruct-align/1aurA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aurA/nostruct-align/1aurA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aurA/nostruct-align/1aurA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14781/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.111145 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1auuA id: 1auuA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auuA/nostruct-align/1auuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auuA/nostruct-align/1auuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1auuA/nostruct-align/1auuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28964/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.061096 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1auvA id: 1auvA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auvA/nostruct-align/1auvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auvA/nostruct-align/1auvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1auvA/nostruct-align/1auvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21108/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.818115 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1auwA id: 1auwA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auwA/nostruct-align/1auwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auwA/nostruct-align/1auwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1auwA/nostruct-align/1auwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27687/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.423157 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1auyA id: 1auyA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auyA/nostruct-align/1auyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auyA/nostruct-align/1auyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1auyA/nostruct-align/1auyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27990/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.695190 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1auz id: 1auz alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auz/nostruct-align/1auz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auz/nostruct-align/1auz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1auz/nostruct-align/1auz.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20458/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.960144 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1av1A id: 1av1A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1av1A/nostruct-align/1av1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1av1A/nostruct-align/1av1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1av1A/nostruct-align/1av1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28599/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.559143 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1avaC id: 1avaC alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avaC/nostruct-align/1avaC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avaC/nostruct-align/1avaC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1avaC/nostruct-align/1avaC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7953/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.848145 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1avc id: 1avc alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avc/nostruct-align/1avc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avc/nostruct-align/1avc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1avc/nostruct-align/1avc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18259/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.111145 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1avgI id: 1avgI alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avgI/nostruct-align/1avgI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avgI/nostruct-align/1avgI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1avgI/nostruct-align/1avgI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21883/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.150146 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1avmA id: 1avmA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avmA/nostruct-align/1avmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avmA/nostruct-align/1avmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1avmA/nostruct-align/1avmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25598/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.031189 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1avoA id: 1avoA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avoA/nostruct-align/1avoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avoA/nostruct-align/1avoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1avoA/nostruct-align/1avoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-772/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.274109 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1avoB id: 1avoB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avoB/nostruct-align/1avoB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avoB/nostruct-align/1avoB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1avoB/nostruct-align/1avoB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12142/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.488159 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1avpA id: 1avpA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avpA/nostruct-align/1avpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avpA/nostruct-align/1avpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1avpA/nostruct-align/1avpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10151/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.963196 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1avqA id: 1avqA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avqA/nostruct-align/1avqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avqA/nostruct-align/1avqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1avqA/nostruct-align/1avqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10185/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.220154 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1avwB id: 1avwB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avwB/nostruct-align/1avwB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avwB/nostruct-align/1avwB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1avwB/nostruct-align/1avwB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21339/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.953125 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1avyB id: 1avyB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avyB/nostruct-align/1avyB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avyB/nostruct-align/1avyB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1avyB/nostruct-align/1avyB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16529/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.966125 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1avyC id: 1avyC alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avyC/nostruct-align/1avyC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avyC/nostruct-align/1avyC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1avyC/nostruct-align/1avyC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17579/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.448120 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aw0 id: 1aw0 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aw0/nostruct-align/1aw0.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aw0/nostruct-align/1aw0.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aw0/nostruct-align/1aw0.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25711/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.366150 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aw5 id: 1aw5 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aw5/nostruct-align/1aw5.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aw5/nostruct-align/1aw5.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aw5/nostruct-align/1aw5.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22607/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.517151 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aw7A id: 1aw7A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aw7A/nostruct-align/1aw7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aw7A/nostruct-align/1aw7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aw7A/nostruct-align/1aw7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14902/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.908142 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aw8B id: 1aw8B alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aw8B/nostruct-align/1aw8B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aw8B/nostruct-align/1aw8B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aw8B/nostruct-align/1aw8B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32148/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.627136 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aw8E id: 1aw8E alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aw8E/nostruct-align/1aw8E.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aw8E/nostruct-align/1aw8E.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aw8E/nostruct-align/1aw8E.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26120/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.642151 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1awcA id: 1awcA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1awcA/nostruct-align/1awcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1awcA/nostruct-align/1awcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1awcA/nostruct-align/1awcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-130/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.464172 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1awd id: 1awd alignment found: /projects/compbio/experiments/models.97/pdb/1a/1awd/nostruct-align/1awd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1awd/nostruct-align/1awd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1awd/nostruct-align/1awd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17074/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.737183 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1awe id: 1awe alignment found: /projects/compbio/experiments/models.97/pdb/1a/1awe/nostruct-align/1awe.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1awe/nostruct-align/1awe.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1awe/nostruct-align/1awe.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16131/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.106140 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1awj id: 1awj alignment found: /projects/compbio/experiments/models.97/pdb/1a/1awj/nostruct-align/1awj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1awj/nostruct-align/1awj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1awj/nostruct-align/1awj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31603/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.070129 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1awo id: 1awo alignment found: /projects/compbio/experiments/models.97/pdb/1a/1awo/nostruct-align/1awo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1awo/nostruct-align/1awo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1awo/nostruct-align/1awo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25943/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.466187 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1awsA id: 1awsA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1awsA/nostruct-align/1awsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1awsA/nostruct-align/1awsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1awsA/nostruct-align/1awsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5925/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.111145 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ax0 id: 1ax0 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ax0/nostruct-align/1ax0.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ax0/nostruct-align/1ax0.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ax0/nostruct-align/1ax0.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19165/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.024109 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ax4A id: 1ax4A alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ax4A/nostruct-align/1ax4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ax4A/nostruct-align/1ax4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ax4A/nostruct-align/1ax4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6710/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.718201 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ax8 id: 1ax8 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ax8/nostruct-align/1ax8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ax8/nostruct-align/1ax8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ax8/nostruct-align/1ax8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26276/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.303162 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1axh id: 1axh alignment found: /projects/compbio/experiments/models.97/pdb/1a/1axh/nostruct-align/1axh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1axh/nostruct-align/1axh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1axh/nostruct-align/1axh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7926/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.991150 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1axiB id: 1axiB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1axiB/nostruct-align/1axiB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1axiB/nostruct-align/1axiB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1axiB/nostruct-align/1axiB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22432/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.253113 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1axj id: 1axj alignment found: /projects/compbio/experiments/models.97/pdb/1a/1axj/nostruct-align/1axj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1axj/nostruct-align/1axj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1axj/nostruct-align/1axj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27950/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.484131 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1axkA id: 1axkA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1axkA/nostruct-align/1axkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1axkA/nostruct-align/1axkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1axkA/nostruct-align/1axkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26573/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.688171 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1axn id: 1axn alignment found: /projects/compbio/experiments/models.97/pdb/1a/1axn/nostruct-align/1axn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1axn/nostruct-align/1axn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1axn/nostruct-align/1axn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19708/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.247131 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ay7B id: 1ay7B alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ay7B/nostruct-align/1ay7B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ay7B/nostruct-align/1ay7B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ay7B/nostruct-align/1ay7B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5895/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.930115 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aye id: 1aye alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aye/nostruct-align/1aye.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aye/nostruct-align/1aye.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aye/nostruct-align/1aye.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12101/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.140198 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ayfA id: 1ayfA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ayfA/nostruct-align/1ayfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ayfA/nostruct-align/1ayfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ayfA/nostruct-align/1ayfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3184/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.018188 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ayfB id: 1ayfB alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ayfB/nostruct-align/1ayfB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ayfB/nostruct-align/1ayfB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ayfB/nostruct-align/1ayfB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23654/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.943115 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ayj id: 1ayj alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ayj/nostruct-align/1ayj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ayj/nostruct-align/1ayj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ayj/nostruct-align/1ayj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5261/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.066162 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ayl id: 1ayl alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ayl/nostruct-align/1ayl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ayl/nostruct-align/1ayl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ayl/nostruct-align/1ayl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22350/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.264160 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aym1 id: 1aym1 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aym1/nostruct-align/1aym1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aym1/nostruct-align/1aym1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aym1/nostruct-align/1aym1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1179/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.856140 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aym2 id: 1aym2 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aym2/nostruct-align/1aym2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aym2/nostruct-align/1aym2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aym2/nostruct-align/1aym2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27801/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.595093 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1aym3 id: 1aym3 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aym3/nostruct-align/1aym3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aym3/nostruct-align/1aym3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1aym3/nostruct-align/1aym3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4505/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.685120 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ayoA id: 1ayoA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ayoA/nostruct-align/1ayoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ayoA/nostruct-align/1ayoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ayoA/nostruct-align/1ayoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25640/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.615112 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ayx id: 1ayx alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ayx/nostruct-align/1ayx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ayx/nostruct-align/1ayx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ayx/nostruct-align/1ayx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15425/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.199158 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ayyA id: 1ayyA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ayyA/nostruct-align/1ayyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ayyA/nostruct-align/1ayyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1ayyA/nostruct-align/1ayyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14898/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.513184 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1az9 id: 1az9 alignment found: /projects/compbio/experiments/models.97/pdb/1a/1az9/nostruct-align/1az9.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1az9/nostruct-align/1az9.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1az9/nostruct-align/1az9.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24022/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.874146 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1azh id: 1azh alignment found: /projects/compbio/experiments/models.97/pdb/1a/1azh/nostruct-align/1azh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1azh/nostruct-align/1azh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1azh/nostruct-align/1azh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4203/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.995178 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1azo id: 1azo alignment found: /projects/compbio/experiments/models.97/pdb/1a/1azo/nostruct-align/1azo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1azo/nostruct-align/1azo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1azo/nostruct-align/1azo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19677/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.211182 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1azpA id: 1azpA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1azpA/nostruct-align/1azpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1azpA/nostruct-align/1azpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1azpA/nostruct-align/1azpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25322/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.530151 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1azqA id: 1azqA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1azqA/nostruct-align/1azqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1azqA/nostruct-align/1azqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1azqA/nostruct-align/1azqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31611/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.530151 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1azsA id: 1azsA alignment found: /projects/compbio/experiments/models.97/pdb/1a/1azsA/nostruct-align/1azsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1azsA/nostruct-align/1azsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1a/1azsA/nostruct-align/1azsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20533/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.461182 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b04A id: 1b04A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b04A/nostruct-align/1b04A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b04A/nostruct-align/1b04A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b04A/nostruct-align/1b04A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2880/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.358154 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b0b id: 1b0b alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b0b/nostruct-align/1b0b.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b0b/nostruct-align/1b0b.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b0b/nostruct-align/1b0b.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29512/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.640137 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b0nA id: 1b0nA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b0nA/nostruct-align/1b0nA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b0nA/nostruct-align/1b0nA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b0nA/nostruct-align/1b0nA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29938/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.707153 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b0nB id: 1b0nB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b0nB/nostruct-align/1b0nB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b0nB/nostruct-align/1b0nB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b0nB/nostruct-align/1b0nB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1865/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.781189 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b0uA id: 1b0uA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b0uA/nostruct-align/1b0uA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b0uA/nostruct-align/1b0uA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b0uA/nostruct-align/1b0uA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17844/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.353149 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b0y id: 1b0y alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b0y/nostruct-align/1b0y.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b0y/nostruct-align/1b0y.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b0y/nostruct-align/1b0y.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10809/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.682129 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b0yA id: 1b0yA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b0yA/nostruct-align/1b0yA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b0yA/nostruct-align/1b0yA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b0yA/nostruct-align/1b0yA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6264/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.744141 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b10A id: 1b10A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b10A/nostruct-align/1b10A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b10A/nostruct-align/1b10A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b10A/nostruct-align/1b10A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8132/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.190186 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b12A id: 1b12A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b12A/nostruct-align/1b12A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b12A/nostruct-align/1b12A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b12A/nostruct-align/1b12A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28642/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.131165 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b16A id: 1b16A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b16A/nostruct-align/1b16A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b16A/nostruct-align/1b16A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b16A/nostruct-align/1b16A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11649/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.924194 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b1cA id: 1b1cA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b1cA/nostruct-align/1b1cA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b1cA/nostruct-align/1b1cA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b1cA/nostruct-align/1b1cA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7334/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.171143 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b20A id: 1b20A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b20A/nostruct-align/1b20A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b20A/nostruct-align/1b20A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b20A/nostruct-align/1b20A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21837/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.224182 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b22A id: 1b22A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b22A/nostruct-align/1b22A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b22A/nostruct-align/1b22A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b22A/nostruct-align/1b22A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10572/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.859131 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b24A id: 1b24A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b24A/nostruct-align/1b24A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b24A/nostruct-align/1b24A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b24A/nostruct-align/1b24A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17882/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.602173 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b25A id: 1b25A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b25A/nostruct-align/1b25A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b25A/nostruct-align/1b25A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b25A/nostruct-align/1b25A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29362/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.132141 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b2iA id: 1b2iA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b2iA/nostruct-align/1b2iA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b2iA/nostruct-align/1b2iA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b2iA/nostruct-align/1b2iA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23654/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.311157 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b2nA id: 1b2nA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b2nA/nostruct-align/1b2nA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b2nA/nostruct-align/1b2nA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b2nA/nostruct-align/1b2nA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4609/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.512146 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b2nB id: 1b2nB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b2nB/nostruct-align/1b2nB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b2nB/nostruct-align/1b2nB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b2nB/nostruct-align/1b2nB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19046/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.617126 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b2pA id: 1b2pA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b2pA/nostruct-align/1b2pA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b2pA/nostruct-align/1b2pA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b2pA/nostruct-align/1b2pA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7105/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.136108 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b2sD id: 1b2sD alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b2sD/nostruct-align/1b2sD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b2sD/nostruct-align/1b2sD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b2sD/nostruct-align/1b2sD.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-15426/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.906128 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b2vA id: 1b2vA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b2vA/nostruct-align/1b2vA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b2vA/nostruct-align/1b2vA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b2vA/nostruct-align/1b2vA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-389/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.016174 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b33N id: 1b33N alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b33N/nostruct-align/1b33N.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b33N/nostruct-align/1b33N.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b33N/nostruct-align/1b33N.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17977/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.093140 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b34B id: 1b34B alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b34B/nostruct-align/1b34B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b34B/nostruct-align/1b34B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b34B/nostruct-align/1b34B.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26369/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.526123 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b35A id: 1b35A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b35A/nostruct-align/1b35A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b35A/nostruct-align/1b35A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b35A/nostruct-align/1b35A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5398/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.192139 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b35B id: 1b35B alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b35B/nostruct-align/1b35B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b35B/nostruct-align/1b35B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b35B/nostruct-align/1b35B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10531/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.416138 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b35C id: 1b35C alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b35C/nostruct-align/1b35C.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b35C/nostruct-align/1b35C.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b35C/nostruct-align/1b35C.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27549/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.921143 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b35D id: 1b35D alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b35D/nostruct-align/1b35D.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b35D/nostruct-align/1b35D.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b35D/nostruct-align/1b35D.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11760/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.928162 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b37B id: 1b37B alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b37B/nostruct-align/1b37B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b37B/nostruct-align/1b37B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b37B/nostruct-align/1b37B.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16134/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.489136 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b3aA id: 1b3aA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3aA/nostruct-align/1b3aA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3aA/nostruct-align/1b3aA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b3aA/nostruct-align/1b3aA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27017/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.740112 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b3eA id: 1b3eA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3eA/nostruct-align/1b3eA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3eA/nostruct-align/1b3eA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b3eA/nostruct-align/1b3eA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21094/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.731140 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b3jA id: 1b3jA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3jA/nostruct-align/1b3jA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3jA/nostruct-align/1b3jA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b3jA/nostruct-align/1b3jA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10841/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.976135 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b3mA id: 1b3mA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3mA/nostruct-align/1b3mA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3mA/nostruct-align/1b3mA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b3mA/nostruct-align/1b3mA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30858/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.796143 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b3nA id: 1b3nA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3nA/nostruct-align/1b3nA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3nA/nostruct-align/1b3nA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b3nA/nostruct-align/1b3nA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6140/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.204163 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b3qA id: 1b3qA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3qA/nostruct-align/1b3qA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3qA/nostruct-align/1b3qA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b3qA/nostruct-align/1b3qA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25403/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.126160 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b3rA id: 1b3rA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3rA/nostruct-align/1b3rA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3rA/nostruct-align/1b3rA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b3rA/nostruct-align/1b3rA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1244/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.996155 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b3tA id: 1b3tA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3tA/nostruct-align/1b3tA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3tA/nostruct-align/1b3tA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b3tA/nostruct-align/1b3tA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11856/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.290100 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b3uA id: 1b3uA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3uA/nostruct-align/1b3uA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3uA/nostruct-align/1b3uA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b3uA/nostruct-align/1b3uA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10344/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.415161 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b47A id: 1b47A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b47A/nostruct-align/1b47A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b47A/nostruct-align/1b47A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b47A/nostruct-align/1b47A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1242/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.300110 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b4aA id: 1b4aA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4aA/nostruct-align/1b4aA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4aA/nostruct-align/1b4aA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b4aA/nostruct-align/1b4aA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20818/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.564148 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b4cA id: 1b4cA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4cA/nostruct-align/1b4cA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4cA/nostruct-align/1b4cA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b4cA/nostruct-align/1b4cA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7750/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.589111 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b4eA id: 1b4eA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4eA/nostruct-align/1b4eA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4eA/nostruct-align/1b4eA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b4eA/nostruct-align/1b4eA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5909/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.414185 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b4fA id: 1b4fA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4fA/nostruct-align/1b4fA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4fA/nostruct-align/1b4fA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b4fA/nostruct-align/1b4fA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30767/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.271118 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b4fG id: 1b4fG alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4fG/nostruct-align/1b4fG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4fG/nostruct-align/1b4fG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b4fG/nostruct-align/1b4fG.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28113/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.518188 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b4kA id: 1b4kA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4kA/nostruct-align/1b4kA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4kA/nostruct-align/1b4kA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b4kA/nostruct-align/1b4kA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5257/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.434143 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b4r id: 1b4r alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4r/nostruct-align/1b4r.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4r/nostruct-align/1b4r.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b4r/nostruct-align/1b4r.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5455/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.194153 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b4rA id: 1b4rA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4rA/nostruct-align/1b4rA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4rA/nostruct-align/1b4rA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b4rA/nostruct-align/1b4rA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1280/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.200134 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b4vA id: 1b4vA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4vA/nostruct-align/1b4vA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4vA/nostruct-align/1b4vA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b4vA/nostruct-align/1b4vA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15770/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.287109 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b54 id: 1b54 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b54/nostruct-align/1b54.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b54/nostruct-align/1b54.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b54/nostruct-align/1b54.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27248/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.992126 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b5eA id: 1b5eA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b5eA/nostruct-align/1b5eA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b5eA/nostruct-align/1b5eA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b5eA/nostruct-align/1b5eA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4160/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.747192 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b5fA id: 1b5fA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b5fA/nostruct-align/1b5fA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b5fA/nostruct-align/1b5fA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b5fA/nostruct-align/1b5fA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4322/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.009155 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b5fB id: 1b5fB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b5fB/nostruct-align/1b5fB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b5fB/nostruct-align/1b5fB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b5fB/nostruct-align/1b5fB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4179/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.901184 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b5l id: 1b5l alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b5l/nostruct-align/1b5l.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b5l/nostruct-align/1b5l.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b5l/nostruct-align/1b5l.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31931/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.400146 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b5qA id: 1b5qA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b5qA/nostruct-align/1b5qA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b5qA/nostruct-align/1b5qA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b5qA/nostruct-align/1b5qA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5425/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.113159 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b5tA id: 1b5tA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b5tA/nostruct-align/1b5tA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b5tA/nostruct-align/1b5tA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b5tA/nostruct-align/1b5tA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31638/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.522156 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b63A id: 1b63A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b63A/nostruct-align/1b63A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b63A/nostruct-align/1b63A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b63A/nostruct-align/1b63A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3468/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.659119 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b64 id: 1b64 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b64/nostruct-align/1b64.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b64/nostruct-align/1b64.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b64/nostruct-align/1b64.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19452/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.199158 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b65A id: 1b65A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b65A/nostruct-align/1b65A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b65A/nostruct-align/1b65A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b65A/nostruct-align/1b65A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8527/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.565186 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b66A id: 1b66A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b66A/nostruct-align/1b66A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b66A/nostruct-align/1b66A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b66A/nostruct-align/1b66A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22944/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.055115 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b67A id: 1b67A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b67A/nostruct-align/1b67A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b67A/nostruct-align/1b67A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b67A/nostruct-align/1b67A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12492/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.869141 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b6a id: 1b6a alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b6a/nostruct-align/1b6a.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b6a/nostruct-align/1b6a.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b6a/nostruct-align/1b6a.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13494/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.531189 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b6cB id: 1b6cB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b6cB/nostruct-align/1b6cB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b6cB/nostruct-align/1b6cB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b6cB/nostruct-align/1b6cB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12662/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.708130 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b6e id: 1b6e alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b6e/nostruct-align/1b6e.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b6e/nostruct-align/1b6e.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b6e/nostruct-align/1b6e.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26499/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.463135 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b6g id: 1b6g alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b6g/nostruct-align/1b6g.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b6g/nostruct-align/1b6g.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b6g/nostruct-align/1b6g.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27046/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.595154 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b6rA id: 1b6rA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b6rA/nostruct-align/1b6rA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b6rA/nostruct-align/1b6rA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b6rA/nostruct-align/1b6rA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11498/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.706177 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b6tA id: 1b6tA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b6tA/nostruct-align/1b6tA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b6tA/nostruct-align/1b6tA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b6tA/nostruct-align/1b6tA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14938/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.302124 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b6u id: 1b6u alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b6u/nostruct-align/1b6u.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b6u/nostruct-align/1b6u.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b6u/nostruct-align/1b6u.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23536/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.308167 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b71A id: 1b71A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b71A/nostruct-align/1b71A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b71A/nostruct-align/1b71A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b71A/nostruct-align/1b71A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18901/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.677185 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b72A id: 1b72A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b72A/nostruct-align/1b72A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b72A/nostruct-align/1b72A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b72A/nostruct-align/1b72A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15458/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.776184 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b73A id: 1b73A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b73A/nostruct-align/1b73A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b73A/nostruct-align/1b73A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b73A/nostruct-align/1b73A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10498/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.799194 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b74A id: 1b74A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b74A/nostruct-align/1b74A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b74A/nostruct-align/1b74A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b74A/nostruct-align/1b74A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16870/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.799194 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b77A id: 1b77A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b77A/nostruct-align/1b77A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b77A/nostruct-align/1b77A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b77A/nostruct-align/1b77A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21187/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.288147 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b78A id: 1b78A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b78A/nostruct-align/1b78A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b78A/nostruct-align/1b78A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b78A/nostruct-align/1b78A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13766/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.145142 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b79A id: 1b79A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b79A/nostruct-align/1b79A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b79A/nostruct-align/1b79A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b79A/nostruct-align/1b79A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5642/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.118164 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b7bA id: 1b7bA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b7bA/nostruct-align/1b7bA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b7bA/nostruct-align/1b7bA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b7bA/nostruct-align/1b7bA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22764/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.013184 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b7dA id: 1b7dA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b7dA/nostruct-align/1b7dA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b7dA/nostruct-align/1b7dA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b7dA/nostruct-align/1b7dA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30315/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.446167 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b7eA id: 1b7eA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b7eA/nostruct-align/1b7eA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b7eA/nostruct-align/1b7eA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b7eA/nostruct-align/1b7eA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6933/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.822144 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b7fA id: 1b7fA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b7fA/nostruct-align/1b7fA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b7fA/nostruct-align/1b7fA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b7fA/nostruct-align/1b7fA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18966/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.141174 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b7gO id: 1b7gO alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b7gO/nostruct-align/1b7gO.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b7gO/nostruct-align/1b7gO.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b7gO/nostruct-align/1b7gO.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12118/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.346130 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b87A id: 1b87A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b87A/nostruct-align/1b87A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b87A/nostruct-align/1b87A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b87A/nostruct-align/1b87A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21548/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.112183 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b89A id: 1b89A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b89A/nostruct-align/1b89A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b89A/nostruct-align/1b89A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b89A/nostruct-align/1b89A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26341/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.349182 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b8aA id: 1b8aA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8aA/nostruct-align/1b8aA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8aA/nostruct-align/1b8aA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8aA/nostruct-align/1b8aA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18890/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.549133 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b8bA id: 1b8bA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8bA/nostruct-align/1b8bA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8bA/nostruct-align/1b8bA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8bA/nostruct-align/1b8bA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10060/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.163147 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b8dA id: 1b8dA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8dA/nostruct-align/1b8dA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8dA/nostruct-align/1b8dA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8dA/nostruct-align/1b8dA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15098/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.008118 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b8fA id: 1b8fA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8fA/nostruct-align/1b8fA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8fA/nostruct-align/1b8fA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8fA/nostruct-align/1b8fA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5069/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.384155 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b8gA id: 1b8gA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8gA/nostruct-align/1b8gA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8gA/nostruct-align/1b8gA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8gA/nostruct-align/1b8gA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15866/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.881165 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b8jA id: 1b8jA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8jA/nostruct-align/1b8jA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8jA/nostruct-align/1b8jA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8jA/nostruct-align/1b8jA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2209/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.382141 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b8kA id: 1b8kA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8kA/nostruct-align/1b8kA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8kA/nostruct-align/1b8kA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8kA/nostruct-align/1b8kA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5764/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.975159 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b8oA id: 1b8oA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8oA/nostruct-align/1b8oA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8oA/nostruct-align/1b8oA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8oA/nostruct-align/1b8oA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22792/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.384155 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b8qA id: 1b8qA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8qA/nostruct-align/1b8qA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8qA/nostruct-align/1b8qA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8qA/nostruct-align/1b8qA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5662/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.075134 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b8sA id: 1b8sA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8sA/nostruct-align/1b8sA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8sA/nostruct-align/1b8sA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8sA/nostruct-align/1b8sA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12511/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.703125 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b8tA id: 1b8tA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8tA/nostruct-align/1b8tA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8tA/nostruct-align/1b8tA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8tA/nostruct-align/1b8tA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22085/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.409119 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b8wA id: 1b8wA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8wA/nostruct-align/1b8wA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8wA/nostruct-align/1b8wA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8wA/nostruct-align/1b8wA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25272/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.226196 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b8xA id: 1b8xA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8xA/nostruct-align/1b8xA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8xA/nostruct-align/1b8xA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b8xA/nostruct-align/1b8xA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21340/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.242188 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b91A id: 1b91A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b91A/nostruct-align/1b91A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b91A/nostruct-align/1b91A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b91A/nostruct-align/1b91A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1103/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.557129 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b93A id: 1b93A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b93A/nostruct-align/1b93A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b93A/nostruct-align/1b93A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b93A/nostruct-align/1b93A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10348/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.060181 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b93B id: 1b93B alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b93B/nostruct-align/1b93B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b93B/nostruct-align/1b93B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b93B/nostruct-align/1b93B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23627/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.060120 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b9dA id: 1b9dA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9dA/nostruct-align/1b9dA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9dA/nostruct-align/1b9dA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b9dA/nostruct-align/1b9dA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-299/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.134155 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b9hA id: 1b9hA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9hA/nostruct-align/1b9hA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9hA/nostruct-align/1b9hA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b9hA/nostruct-align/1b9hA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9126/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.728088 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b9lA id: 1b9lA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9lA/nostruct-align/1b9lA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9lA/nostruct-align/1b9lA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b9lA/nostruct-align/1b9lA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31815/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.061157 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b9mA id: 1b9mA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9mA/nostruct-align/1b9mA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9mA/nostruct-align/1b9mA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b9mA/nostruct-align/1b9mA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11162/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.833191 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b9oA id: 1b9oA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9oA/nostruct-align/1b9oA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9oA/nostruct-align/1b9oA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b9oA/nostruct-align/1b9oA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27252/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.102112 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b9pA id: 1b9pA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9pA/nostruct-align/1b9pA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9pA/nostruct-align/1b9pA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b9pA/nostruct-align/1b9pA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10106/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.199158 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b9uA id: 1b9uA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9uA/nostruct-align/1b9uA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9uA/nostruct-align/1b9uA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b9uA/nostruct-align/1b9uA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27775/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.055176 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b9wA id: 1b9wA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9wA/nostruct-align/1b9wA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9wA/nostruct-align/1b9wA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b9wA/nostruct-align/1b9wA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31444/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.077148 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b9xB id: 1b9xB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9xB/nostruct-align/1b9xB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9xB/nostruct-align/1b9xB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b9xB/nostruct-align/1b9xB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16797/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.112122 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b9yC id: 1b9yC alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9yC/nostruct-align/1b9yC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9yC/nostruct-align/1b9yC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b9yC/nostruct-align/1b9yC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2062/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.789124 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1b9zA id: 1b9zA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9zA/nostruct-align/1b9zA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9zA/nostruct-align/1b9zA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1b9zA/nostruct-align/1b9zA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31182/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.502136 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ba1 id: 1ba1 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1ba1/nostruct-align/1ba1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1ba1/nostruct-align/1ba1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1ba1/nostruct-align/1ba1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18315/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.023132 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ba4 id: 1ba4 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1ba4/nostruct-align/1ba4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1ba4/nostruct-align/1ba4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1ba4/nostruct-align/1ba4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27578/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.510132 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ba5 id: 1ba5 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1ba5/nostruct-align/1ba5.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1ba5/nostruct-align/1ba5.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1ba5/nostruct-align/1ba5.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7894/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.501160 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ba6 id: 1ba6 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1ba6/nostruct-align/1ba6.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1ba6/nostruct-align/1ba6.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1ba6/nostruct-align/1ba6.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1589/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.525146 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1babA id: 1babA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1babA/nostruct-align/1babA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1babA/nostruct-align/1babA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1babA/nostruct-align/1babA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15943/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.356140 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1babB id: 1babB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1babB/nostruct-align/1babB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1babB/nostruct-align/1babB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1babB/nostruct-align/1babB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22166/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.350159 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bag id: 1bag alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bag/nostruct-align/1bag.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bag/nostruct-align/1bag.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bag/nostruct-align/1bag.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12436/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.541138 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bak id: 1bak alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bak/nostruct-align/1bak.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bak/nostruct-align/1bak.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bak/nostruct-align/1bak.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28179/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.200134 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bal id: 1bal alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bal/nostruct-align/1bal.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bal/nostruct-align/1bal.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bal/nostruct-align/1bal.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21134/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.044128 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bam id: 1bam alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bam/nostruct-align/1bam.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bam/nostruct-align/1bam.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bam/nostruct-align/1bam.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10736/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.079163 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1baq id: 1baq alignment found: /projects/compbio/experiments/models.97/pdb/1b/1baq/nostruct-align/1baq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1baq/nostruct-align/1baq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1baq/nostruct-align/1baq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19754/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.426147 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bax id: 1bax alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bax/nostruct-align/1bax.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bax/nostruct-align/1bax.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bax/nostruct-align/1bax.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15887/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.719116 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bazA id: 1bazA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bazA/nostruct-align/1bazA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bazA/nostruct-align/1bazA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bazA/nostruct-align/1bazA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32285/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.156189 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bb1A id: 1bb1A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bb1A/nostruct-align/1bb1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bb1A/nostruct-align/1bb1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bb1A/nostruct-align/1bb1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24931/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.462158 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bb9 id: 1bb9 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bb9/nostruct-align/1bb9.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bb9/nostruct-align/1bb9.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bb9/nostruct-align/1bb9.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30369/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.884155 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bba id: 1bba alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bba/nostruct-align/1bba.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bba/nostruct-align/1bba.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bba/nostruct-align/1bba.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31342/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.386169 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bbg id: 1bbg alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bbg/nostruct-align/1bbg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bbg/nostruct-align/1bbg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bbg/nostruct-align/1bbg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8935/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.935181 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bbhA id: 1bbhA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bbhA/nostruct-align/1bbhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bbhA/nostruct-align/1bbhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bbhA/nostruct-align/1bbhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8051/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.170105 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bbl id: 1bbl alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bbl/nostruct-align/1bbl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bbl/nostruct-align/1bbl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bbl/nostruct-align/1bbl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10759/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.771179 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bbo id: 1bbo alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bbo/nostruct-align/1bbo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bbo/nostruct-align/1bbo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bbo/nostruct-align/1bbo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20885/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.877136 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bbo_1 id: 1bbo_1 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bbo_1/nostruct-align/1bbo_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bbo_1/nostruct-align/1bbo_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bbo_1/nostruct-align/1bbo_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15944/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.622131 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bbo_2 id: 1bbo_2 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bbo_2/nostruct-align/1bbo_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bbo_2/nostruct-align/1bbo_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bbo_2/nostruct-align/1bbo_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31489/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.898193 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bbpA id: 1bbpA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bbpA/nostruct-align/1bbpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bbpA/nostruct-align/1bbpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bbpA/nostruct-align/1bbpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14215/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.385132 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bbt1 id: 1bbt1 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bbt1/nostruct-align/1bbt1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bbt1/nostruct-align/1bbt1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bbt1/nostruct-align/1bbt1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13468/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.249146 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bbt3 id: 1bbt3 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bbt3/nostruct-align/1bbt3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bbt3/nostruct-align/1bbt3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bbt3/nostruct-align/1bbt3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1523/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.851135 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bbzA id: 1bbzA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bbzA/nostruct-align/1bbzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bbzA/nostruct-align/1bbzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bbzA/nostruct-align/1bbzA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24277/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.530151 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bc4 id: 1bc4 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bc4/nostruct-align/1bc4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bc4/nostruct-align/1bc4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bc4/nostruct-align/1bc4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28942/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.540161 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bc5A id: 1bc5A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bc5A/nostruct-align/1bc5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bc5A/nostruct-align/1bc5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bc5A/nostruct-align/1bc5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17191/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.341125 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bc8C id: 1bc8C alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bc8C/nostruct-align/1bc8C.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bc8C/nostruct-align/1bc8C.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bc8C/nostruct-align/1bc8C.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14569/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.366150 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bcfA id: 1bcfA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bcfA/nostruct-align/1bcfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bcfA/nostruct-align/1bcfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bcfA/nostruct-align/1bcfA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4825/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.619141 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bco id: 1bco alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bco/nostruct-align/1bco.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bco/nostruct-align/1bco.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bco/nostruct-align/1bco.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3181/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.247131 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bco_1 id: 1bco_1 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bco_1/nostruct-align/1bco_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bco_1/nostruct-align/1bco_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bco_1/nostruct-align/1bco_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16972/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.744141 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bco_2 id: 1bco_2 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bco_2/nostruct-align/1bco_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bco_2/nostruct-align/1bco_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bco_2/nostruct-align/1bco_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23235/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.225098 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bcpA id: 1bcpA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bcpA/nostruct-align/1bcpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bcpA/nostruct-align/1bcpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bcpA/nostruct-align/1bcpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16357/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.987122 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bcpB id: 1bcpB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bcpB/nostruct-align/1bcpB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bcpB/nostruct-align/1bcpB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bcpB/nostruct-align/1bcpB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19663/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.378174 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bcpD id: 1bcpD alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bcpD/nostruct-align/1bcpD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bcpD/nostruct-align/1bcpD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bcpD/nostruct-align/1bcpD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6502/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.735168 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bct id: 1bct alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bct/nostruct-align/1bct.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bct/nostruct-align/1bct.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bct/nostruct-align/1bct.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28965/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.317139 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bd0A id: 1bd0A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bd0A/nostruct-align/1bd0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bd0A/nostruct-align/1bd0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bd0A/nostruct-align/1bd0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7011/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.444153 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bd3A id: 1bd3A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bd3A/nostruct-align/1bd3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bd3A/nostruct-align/1bd3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bd3A/nostruct-align/1bd3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4202/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.453125 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bd8 id: 1bd8 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bd8/nostruct-align/1bd8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bd8/nostruct-align/1bd8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bd8/nostruct-align/1bd8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15482/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.036194 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bdb id: 1bdb alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bdb/nostruct-align/1bdb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bdb/nostruct-align/1bdb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bdb/nostruct-align/1bdb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24884/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.335144 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bde id: 1bde alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bde/nostruct-align/1bde.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bde/nostruct-align/1bde.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bde/nostruct-align/1bde.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11915/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.113159 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bdfA id: 1bdfA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bdfA/nostruct-align/1bdfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bdfA/nostruct-align/1bdfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bdfA/nostruct-align/1bdfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19824/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.795166 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bdmA id: 1bdmA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bdmA/nostruct-align/1bdmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bdmA/nostruct-align/1bdmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bdmA/nostruct-align/1bdmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19040/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.823181 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bdmA_1 id: 1bdmA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bdmA_1/nostruct-align/1bdmA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bdmA_1/nostruct-align/1bdmA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bdmA_1/nostruct-align/1bdmA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23881/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.990112 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bdmA_2 id: 1bdmA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bdmA_2/nostruct-align/1bdmA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bdmA_2/nostruct-align/1bdmA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bdmA_2/nostruct-align/1bdmA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3581/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.465149 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bdmB id: 1bdmB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bdmB/nostruct-align/1bdmB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bdmB/nostruct-align/1bdmB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bdmB/nostruct-align/1bdmB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4950/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.026123 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bdo id: 1bdo alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bdo/nostruct-align/1bdo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bdo/nostruct-align/1bdo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bdo/nostruct-align/1bdo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-594/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.888123 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bds id: 1bds alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bds/nostruct-align/1bds.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bds/nostruct-align/1bds.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bds/nostruct-align/1bds.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16370/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.762146 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bdyA id: 1bdyA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bdyA/nostruct-align/1bdyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bdyA/nostruct-align/1bdyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bdyA/nostruct-align/1bdyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10293/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.061157 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1be1 id: 1be1 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be1/nostruct-align/1be1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be1/nostruct-align/1be1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1be1/nostruct-align/1be1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13828/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.255127 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1be3A id: 1be3A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3A/nostruct-align/1be3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3A/nostruct-align/1be3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1be3A/nostruct-align/1be3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28692/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.016113 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1be3B id: 1be3B alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3B/nostruct-align/1be3B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3B/nostruct-align/1be3B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1be3B/nostruct-align/1be3B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15216/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.566162 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1be3C id: 1be3C alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3C/nostruct-align/1be3C.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3C/nostruct-align/1be3C.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1be3C/nostruct-align/1be3C.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10517/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.598145 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1be3D id: 1be3D alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3D/nostruct-align/1be3D.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3D/nostruct-align/1be3D.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1be3D/nostruct-align/1be3D.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32275/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.864136 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1be3F id: 1be3F alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3F/nostruct-align/1be3F.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3F/nostruct-align/1be3F.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1be3F/nostruct-align/1be3F.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27541/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.836182 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1be3G id: 1be3G alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3G/nostruct-align/1be3G.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3G/nostruct-align/1be3G.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1be3G/nostruct-align/1be3G.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7579/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.975159 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1be3H id: 1be3H alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3H/nostruct-align/1be3H.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3H/nostruct-align/1be3H.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1be3H/nostruct-align/1be3H.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26313/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.869141 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1be3I id: 1be3I alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3I/nostruct-align/1be3I.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3I/nostruct-align/1be3I.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1be3I/nostruct-align/1be3I.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7775/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.306152 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1be3J id: 1be3J alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3J/nostruct-align/1be3J.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3J/nostruct-align/1be3J.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1be3J/nostruct-align/1be3J.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22852/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.549194 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1be9A id: 1be9A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be9A/nostruct-align/1be9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be9A/nostruct-align/1be9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1be9A/nostruct-align/1be9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19373/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.115112 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bea id: 1bea alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bea/nostruct-align/1bea.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bea/nostruct-align/1bea.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bea/nostruct-align/1bea.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2206/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.347168 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bebA id: 1bebA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bebA/nostruct-align/1bebA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bebA/nostruct-align/1bebA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bebA/nostruct-align/1bebA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10528/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.379150 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bec id: 1bec alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bec/nostruct-align/1bec.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bec/nostruct-align/1bec.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bec/nostruct-align/1bec.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6168/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.958191 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1befA id: 1befA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1befA/nostruct-align/1befA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1befA/nostruct-align/1befA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1befA/nostruct-align/1befA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7086/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.638123 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1behA id: 1behA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1behA/nostruct-align/1behA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1behA/nostruct-align/1behA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1behA/nostruct-align/1behA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31126/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.639099 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1benA id: 1benA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1benA/nostruct-align/1benA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1benA/nostruct-align/1benA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1benA/nostruct-align/1benA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30558/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -4.883179 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1benB id: 1benB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1benB/nostruct-align/1benB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1benB/nostruct-align/1benB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1benB/nostruct-align/1benB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20303/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.012146 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1beo id: 1beo alignment found: /projects/compbio/experiments/models.97/pdb/1b/1beo/nostruct-align/1beo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1beo/nostruct-align/1beo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1beo/nostruct-align/1beo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17564/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.245117 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bet id: 1bet alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bet/nostruct-align/1bet.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bet/nostruct-align/1bet.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bet/nostruct-align/1bet.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1568/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.840149 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bev1 id: 1bev1 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bev1/nostruct-align/1bev1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bev1/nostruct-align/1bev1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bev1/nostruct-align/1bev1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26846/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.253174 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bev4 id: 1bev4 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bev4/nostruct-align/1bev4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bev4/nostruct-align/1bev4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bev4/nostruct-align/1bev4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13775/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.299133 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bf2 id: 1bf2 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bf2/nostruct-align/1bf2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bf2/nostruct-align/1bf2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bf2/nostruct-align/1bf2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12662/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.698181 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bf8 id: 1bf8 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bf8/nostruct-align/1bf8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bf8/nostruct-align/1bf8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bf8/nostruct-align/1bf8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16226/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.827148 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bfd id: 1bfd alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bfd/nostruct-align/1bfd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bfd/nostruct-align/1bfd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bfd/nostruct-align/1bfd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5643/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.038147 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bfeA id: 1bfeA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bfeA/nostruct-align/1bfeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bfeA/nostruct-align/1bfeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bfeA/nostruct-align/1bfeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27926/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.706116 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bfg id: 1bfg alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bfg/nostruct-align/1bfg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bfg/nostruct-align/1bfg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bfg/nostruct-align/1bfg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19568/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.695129 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bfmA id: 1bfmA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bfmA/nostruct-align/1bfmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bfmA/nostruct-align/1bfmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bfmA/nostruct-align/1bfmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20922/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.312134 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bg0 id: 1bg0 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bg0/nostruct-align/1bg0.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bg0/nostruct-align/1bg0.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bg0/nostruct-align/1bg0.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28635/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.092163 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bg1A id: 1bg1A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bg1A/nostruct-align/1bg1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bg1A/nostruct-align/1bg1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bg1A/nostruct-align/1bg1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23355/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.223145 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bg2 id: 1bg2 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bg2/nostruct-align/1bg2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bg2/nostruct-align/1bg2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bg2/nostruct-align/1bg2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30827/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.977112 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bg6 id: 1bg6 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bg6/nostruct-align/1bg6.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bg6/nostruct-align/1bg6.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bg6/nostruct-align/1bg6.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17607/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.529114 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bg7 id: 1bg7 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bg7/nostruct-align/1bg7.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bg7/nostruct-align/1bg7.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bg7/nostruct-align/1bg7.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16054/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.897156 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bg8A id: 1bg8A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bg8A/nostruct-align/1bg8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bg8A/nostruct-align/1bg8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bg8A/nostruct-align/1bg8A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11109/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.492126 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bgc id: 1bgc alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bgc/nostruct-align/1bgc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bgc/nostruct-align/1bgc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bgc/nostruct-align/1bgc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26182/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.099121 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bgeB id: 1bgeB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bgeB/nostruct-align/1bgeB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bgeB/nostruct-align/1bgeB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bgeB/nostruct-align/1bgeB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-26492/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.751160 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bgf id: 1bgf alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bgf/nostruct-align/1bgf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bgf/nostruct-align/1bgf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bgf/nostruct-align/1bgf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15038/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.897156 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bgj id: 1bgj alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bgj/nostruct-align/1bgj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bgj/nostruct-align/1bgj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bgj/nostruct-align/1bgj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8630/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.552185 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bgk id: 1bgk alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bgk/nostruct-align/1bgk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bgk/nostruct-align/1bgk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bgk/nostruct-align/1bgk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10576/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.089111 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bglA id: 1bglA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bglA/nostruct-align/1bglA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bglA/nostruct-align/1bglA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bglA/nostruct-align/1bglA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25259/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.773132 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bglA_1 id: 1bglA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bglA_1/nostruct-align/1bglA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bglA_1/nostruct-align/1bglA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bglA_1/nostruct-align/1bglA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26958/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.404114 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bglA_2 id: 1bglA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bglA_2/nostruct-align/1bglA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bglA_2/nostruct-align/1bglA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bglA_2/nostruct-align/1bglA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15593/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.225098 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bglA_3 id: 1bglA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bglA_3/nostruct-align/1bglA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bglA_3/nostruct-align/1bglA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bglA_3/nostruct-align/1bglA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27271/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.089111 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bglA_4 id: 1bglA_4 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bglA_4/nostruct-align/1bglA_4.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bglA_4/nostruct-align/1bglA_4.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bglA_4/nostruct-align/1bglA_4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24862/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.982178 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bglA_5 id: 1bglA_5 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bglA_5/nostruct-align/1bglA_5.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bglA_5/nostruct-align/1bglA_5.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bglA_5/nostruct-align/1bglA_5.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5868/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.177124 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bgp id: 1bgp alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bgp/nostruct-align/1bgp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bgp/nostruct-align/1bgp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bgp/nostruct-align/1bgp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23142/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.303101 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bgvA id: 1bgvA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bgvA/nostruct-align/1bgvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bgvA/nostruct-align/1bgvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bgvA/nostruct-align/1bgvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10443/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.424133 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bgyE id: 1bgyE alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bgyE/nostruct-align/1bgyE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bgyE/nostruct-align/1bgyE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bgyE/nostruct-align/1bgyE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15673/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.705139 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bh5A id: 1bh5A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bh5A/nostruct-align/1bh5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bh5A/nostruct-align/1bh5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bh5A/nostruct-align/1bh5A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-20593/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.863159 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bh7 id: 1bh7 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bh7/nostruct-align/1bh7.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bh7/nostruct-align/1bh7.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bh7/nostruct-align/1bh7.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16932/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.177185 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bh9A id: 1bh9A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bh9A/nostruct-align/1bh9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bh9A/nostruct-align/1bh9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bh9A/nostruct-align/1bh9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13567/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.428101 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bh9B id: 1bh9B alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bh9B/nostruct-align/1bh9B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bh9B/nostruct-align/1bh9B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bh9B/nostruct-align/1bh9B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27025/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.887146 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bhb id: 1bhb alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhb/nostruct-align/1bhb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhb/nostruct-align/1bhb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bhb/nostruct-align/1bhb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9805/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.648132 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bhdA id: 1bhdA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhdA/nostruct-align/1bhdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhdA/nostruct-align/1bhdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bhdA/nostruct-align/1bhdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32527/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.213135 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bhe id: 1bhe alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhe/nostruct-align/1bhe.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhe/nostruct-align/1bhe.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bhe/nostruct-align/1bhe.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4921/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.666138 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bhgA id: 1bhgA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhgA/nostruct-align/1bhgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhgA/nostruct-align/1bhgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bhgA/nostruct-align/1bhgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12164/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.147156 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bhi id: 1bhi alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhi/nostruct-align/1bhi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhi/nostruct-align/1bhi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bhi/nostruct-align/1bhi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7793/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.857178 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bhjA id: 1bhjA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhjA/nostruct-align/1bhjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhjA/nostruct-align/1bhjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bhjA/nostruct-align/1bhjA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6314/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.436157 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bhp id: 1bhp alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhp/nostruct-align/1bhp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhp/nostruct-align/1bhp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bhp/nostruct-align/1bhp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4771/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.043152 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bhtA id: 1bhtA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhtA/nostruct-align/1bhtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhtA/nostruct-align/1bhtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bhtA/nostruct-align/1bhtA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13922/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.016113 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bhu id: 1bhu alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhu/nostruct-align/1bhu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhu/nostruct-align/1bhu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bhu/nostruct-align/1bhu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31976/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.543152 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bi0 id: 1bi0 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bi0/nostruct-align/1bi0.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bi0/nostruct-align/1bi0.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bi0/nostruct-align/1bi0.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31958/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.644165 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bi5A id: 1bi5A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bi5A/nostruct-align/1bi5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bi5A/nostruct-align/1bi5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bi5A/nostruct-align/1bi5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27182/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.067139 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bi6H id: 1bi6H alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bi6H/nostruct-align/1bi6H.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bi6H/nostruct-align/1bi6H.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bi6H/nostruct-align/1bi6H.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20135/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.631165 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bi6H_1 id: 1bi6H_1 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bi6H_1/nostruct-align/1bi6H_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bi6H_1/nostruct-align/1bi6H_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bi6H_1/nostruct-align/1bi6H_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22039/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.413147 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bia id: 1bia alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bia/nostruct-align/1bia.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bia/nostruct-align/1bia.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bia/nostruct-align/1bia.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25873/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.251160 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bia_1 id: 1bia_1 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bia_1/nostruct-align/1bia_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bia_1/nostruct-align/1bia_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bia_1/nostruct-align/1bia_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1148/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.169128 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bia_2 id: 1bia_2 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bia_2/nostruct-align/1bia_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bia_2/nostruct-align/1bia_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bia_2/nostruct-align/1bia_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2863/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.726135 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bia_3 id: 1bia_3 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bia_3/nostruct-align/1bia_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bia_3/nostruct-align/1bia_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bia_3/nostruct-align/1bia_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19958/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.668152 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bib id: 1bib alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bib/nostruct-align/1bib.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bib/nostruct-align/1bib.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bib/nostruct-align/1bib.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24449/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.819153 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bif id: 1bif alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bif/nostruct-align/1bif.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bif/nostruct-align/1bif.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bif/nostruct-align/1bif.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1103/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.904114 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bihA id: 1bihA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bihA/nostruct-align/1bihA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bihA/nostruct-align/1bihA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bihA/nostruct-align/1bihA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6927/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.406189 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bio id: 1bio alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bio/nostruct-align/1bio.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bio/nostruct-align/1bio.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bio/nostruct-align/1bio.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16149/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.324158 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bip id: 1bip alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bip/nostruct-align/1bip.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bip/nostruct-align/1bip.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bip/nostruct-align/1bip.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5326/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.028137 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bix id: 1bix alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bix/nostruct-align/1bix.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bix/nostruct-align/1bix.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bix/nostruct-align/1bix.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28863/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.906128 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bj4A id: 1bj4A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bj4A/nostruct-align/1bj4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bj4A/nostruct-align/1bj4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bj4A/nostruct-align/1bj4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8047/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.169128 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bj5 id: 1bj5 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bj5/nostruct-align/1bj5.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bj5/nostruct-align/1bj5.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bj5/nostruct-align/1bj5.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25672/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.290161 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bj7 id: 1bj7 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bj7/nostruct-align/1bj7.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bj7/nostruct-align/1bj7.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bj7/nostruct-align/1bj7.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7328/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.922119 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bj8 id: 1bj8 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bj8/nostruct-align/1bj8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bj8/nostruct-align/1bj8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bj8/nostruct-align/1bj8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19409/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.593140 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bjaA id: 1bjaA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bjaA/nostruct-align/1bjaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bjaA/nostruct-align/1bjaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bjaA/nostruct-align/1bjaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11489/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.072144 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bjmA id: 1bjmA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bjmA/nostruct-align/1bjmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bjmA/nostruct-align/1bjmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bjmA/nostruct-align/1bjmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8694/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.261108 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bjnA id: 1bjnA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bjnA/nostruct-align/1bjnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bjnA/nostruct-align/1bjnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bjnA/nostruct-align/1bjnA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26422/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.205139 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bjoA id: 1bjoA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bjoA/nostruct-align/1bjoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bjoA/nostruct-align/1bjoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bjoA/nostruct-align/1bjoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1919/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.120117 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bjt id: 1bjt alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bjt/nostruct-align/1bjt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bjt/nostruct-align/1bjt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bjt/nostruct-align/1bjt.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9438/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.681152 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bjwA id: 1bjwA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bjwA/nostruct-align/1bjwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bjwA/nostruct-align/1bjwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bjwA/nostruct-align/1bjwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18839/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.745178 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bjx id: 1bjx alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bjx/nostruct-align/1bjx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bjx/nostruct-align/1bjx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bjx/nostruct-align/1bjx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5705/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.752136 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bk0 id: 1bk0 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bk0/nostruct-align/1bk0.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bk0/nostruct-align/1bk0.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bk0/nostruct-align/1bk0.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18847/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.007141 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bk5A id: 1bk5A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bk5A/nostruct-align/1bk5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bk5A/nostruct-align/1bk5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bk5A/nostruct-align/1bk5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9892/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.438171 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bk6A id: 1bk6A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bk6A/nostruct-align/1bk6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bk6A/nostruct-align/1bk6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bk6A/nostruct-align/1bk6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9504/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.428162 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bk7A id: 1bk7A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bk7A/nostruct-align/1bk7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bk7A/nostruct-align/1bk7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bk7A/nostruct-align/1bk7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20149/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.182129 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bkb id: 1bkb alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkb/nostruct-align/1bkb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkb/nostruct-align/1bkb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bkb/nostruct-align/1bkb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20659/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.392151 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bkcA id: 1bkcA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkcA/nostruct-align/1bkcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkcA/nostruct-align/1bkcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bkcA/nostruct-align/1bkcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23042/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.241150 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bkcE id: 1bkcE alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkcE/nostruct-align/1bkcE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkcE/nostruct-align/1bkcE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bkcE/nostruct-align/1bkcE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10835/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.967102 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bkdS id: 1bkdS alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkdS/nostruct-align/1bkdS.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkdS/nostruct-align/1bkdS.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bkdS/nostruct-align/1bkdS.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4151/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.463196 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bkf id: 1bkf alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkf/nostruct-align/1bkf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkf/nostruct-align/1bkf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bkf/nostruct-align/1bkf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19005/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.369202 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bkjA id: 1bkjA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkjA/nostruct-align/1bkjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkjA/nostruct-align/1bkjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bkjA/nostruct-align/1bkjA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12066/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.758118 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bkpA id: 1bkpA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkpA/nostruct-align/1bkpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkpA/nostruct-align/1bkpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bkpA/nostruct-align/1bkpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9492/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.065186 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bkq id: 1bkq alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkq/nostruct-align/1bkq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkq/nostruct-align/1bkq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bkq/nostruct-align/1bkq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3251/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.363098 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bkrA id: 1bkrA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkrA/nostruct-align/1bkrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkrA/nostruct-align/1bkrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bkrA/nostruct-align/1bkrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21792/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.579102 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bksA id: 1bksA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bksA/nostruct-align/1bksA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bksA/nostruct-align/1bksA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bksA/nostruct-align/1bksA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4060/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.767151 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bksB id: 1bksB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bksB/nostruct-align/1bksB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bksB/nostruct-align/1bksB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bksB/nostruct-align/1bksB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16641/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.802185 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bku id: 1bku alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bku/nostruct-align/1bku.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bku/nostruct-align/1bku.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bku/nostruct-align/1bku.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9085/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.359192 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bkzA id: 1bkzA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkzA/nostruct-align/1bkzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkzA/nostruct-align/1bkzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bkzA/nostruct-align/1bkzA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16707/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.318115 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bl0A id: 1bl0A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bl0A/nostruct-align/1bl0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bl0A/nostruct-align/1bl0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bl0A/nostruct-align/1bl0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16197/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.651184 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bl1 id: 1bl1 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bl1/nostruct-align/1bl1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bl1/nostruct-align/1bl1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bl1/nostruct-align/1bl1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20985/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.292114 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bl8A id: 1bl8A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bl8A/nostruct-align/1bl8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bl8A/nostruct-align/1bl8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bl8A/nostruct-align/1bl8A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26652/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.920105 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ble id: 1ble alignment found: /projects/compbio/experiments/models.97/pdb/1b/1ble/nostruct-align/1ble.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1ble/nostruct-align/1ble.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1ble/nostruct-align/1ble.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15520/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.394104 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bli id: 1bli alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bli/nostruct-align/1bli.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bli/nostruct-align/1bli.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bli/nostruct-align/1bli.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29073/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.637146 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1blxA id: 1blxA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1blxA/nostruct-align/1blxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1blxA/nostruct-align/1blxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1blxA/nostruct-align/1blxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6156/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.604126 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bm4 id: 1bm4 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bm4/nostruct-align/1bm4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bm4/nostruct-align/1bm4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bm4/nostruct-align/1bm4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9780/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.259094 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bm4A id: 1bm4A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bm4A/nostruct-align/1bm4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bm4A/nostruct-align/1bm4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bm4A/nostruct-align/1bm4A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3083/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.287109 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bm8 id: 1bm8 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bm8/nostruct-align/1bm8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bm8/nostruct-align/1bm8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bm8/nostruct-align/1bm8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23756/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.000122 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bm9A id: 1bm9A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bm9A/nostruct-align/1bm9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bm9A/nostruct-align/1bm9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bm9A/nostruct-align/1bm9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10622/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.905151 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bmdA id: 1bmdA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bmdA/nostruct-align/1bmdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bmdA/nostruct-align/1bmdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bmdA/nostruct-align/1bmdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32087/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.084167 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bmfG id: 1bmfG alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bmfG/nostruct-align/1bmfG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bmfG/nostruct-align/1bmfG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bmfG/nostruct-align/1bmfG.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10640/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.348145 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bmlC id: 1bmlC alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bmlC/nostruct-align/1bmlC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bmlC/nostruct-align/1bmlC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bmlC/nostruct-align/1bmlC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8469/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.987122 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bmtA id: 1bmtA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bmtA/nostruct-align/1bmtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bmtA/nostruct-align/1bmtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bmtA/nostruct-align/1bmtA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12434/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.042175 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bmtA_1 id: 1bmtA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bmtA_1/nostruct-align/1bmtA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bmtA_1/nostruct-align/1bmtA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bmtA_1/nostruct-align/1bmtA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18879/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.636108 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bmtA_2 id: 1bmtA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bmtA_2/nostruct-align/1bmtA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bmtA_2/nostruct-align/1bmtA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bmtA_2/nostruct-align/1bmtA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19545/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.552185 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bmv1 id: 1bmv1 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bmv1/nostruct-align/1bmv1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bmv1/nostruct-align/1bmv1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bmv1/nostruct-align/1bmv1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23883/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.423157 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bmv2 id: 1bmv2 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bmv2/nostruct-align/1bmv2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bmv2/nostruct-align/1bmv2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bmv2/nostruct-align/1bmv2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29332/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.869141 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bmx id: 1bmx alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bmx/nostruct-align/1bmx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bmx/nostruct-align/1bmx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bmx/nostruct-align/1bmx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20477/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.957153 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bmy id: 1bmy alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bmy/nostruct-align/1bmy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bmy/nostruct-align/1bmy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bmy/nostruct-align/1bmy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11254/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.965149 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bn5 id: 1bn5 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bn5/nostruct-align/1bn5.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bn5/nostruct-align/1bn5.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bn5/nostruct-align/1bn5.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7018/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.594177 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bn6A id: 1bn6A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bn6A/nostruct-align/1bn6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bn6A/nostruct-align/1bn6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bn6A/nostruct-align/1bn6A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29416/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.795166 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bn7A id: 1bn7A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bn7A/nostruct-align/1bn7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bn7A/nostruct-align/1bn7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bn7A/nostruct-align/1bn7A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20819/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.973145 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bn8A id: 1bn8A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bn8A/nostruct-align/1bn8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bn8A/nostruct-align/1bn8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bn8A/nostruct-align/1bn8A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6765/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.835144 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bnb id: 1bnb alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bnb/nostruct-align/1bnb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bnb/nostruct-align/1bnb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bnb/nostruct-align/1bnb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2485/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.646118 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bncA id: 1bncA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bncA/nostruct-align/1bncA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bncA/nostruct-align/1bncA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bncA/nostruct-align/1bncA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19118/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.339172 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bncA_1 id: 1bncA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bncA_1/nostruct-align/1bncA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bncA_1/nostruct-align/1bncA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bncA_1/nostruct-align/1bncA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29553/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.921143 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bncA_2 id: 1bncA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bncA_2/nostruct-align/1bncA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bncA_2/nostruct-align/1bncA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bncA_2/nostruct-align/1bncA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27483/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.686157 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bncA_3 id: 1bncA_3 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bncA_3/nostruct-align/1bncA_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bncA_3/nostruct-align/1bncA_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bncA_3/nostruct-align/1bncA_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9898/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.114136 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bncB id: 1bncB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bncB/nostruct-align/1bncB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bncB/nostruct-align/1bncB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bncB/nostruct-align/1bncB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10059/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.613159 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bndA id: 1bndA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bndA/nostruct-align/1bndA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bndA/nostruct-align/1bndA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bndA/nostruct-align/1bndA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1639/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.134155 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bnkA id: 1bnkA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bnkA/nostruct-align/1bnkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bnkA/nostruct-align/1bnkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bnkA/nostruct-align/1bnkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30853/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.723145 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bnx id: 1bnx alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bnx/nostruct-align/1bnx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bnx/nostruct-align/1bnx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bnx/nostruct-align/1bnx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9573/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.075195 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bnxA id: 1bnxA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bnxA/nostruct-align/1bnxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bnxA/nostruct-align/1bnxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bnxA/nostruct-align/1bnxA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5183/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.749146 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bo1A id: 1bo1A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bo1A/nostruct-align/1bo1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bo1A/nostruct-align/1bo1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bo1A/nostruct-align/1bo1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26464/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.105164 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bo4A id: 1bo4A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bo4A/nostruct-align/1bo4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bo4A/nostruct-align/1bo4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bo4A/nostruct-align/1bo4A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21078/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.079163 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bo4B id: 1bo4B alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bo4B/nostruct-align/1bo4B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bo4B/nostruct-align/1bo4B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bo4B/nostruct-align/1bo4B.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-16270/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.891113 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bo9 id: 1bo9 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bo9/nostruct-align/1bo9.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bo9/nostruct-align/1bo9.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bo9/nostruct-align/1bo9.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3307/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.710144 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bo9A id: 1bo9A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bo9A/nostruct-align/1bo9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bo9A/nostruct-align/1bo9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bo9A/nostruct-align/1bo9A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6275/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.499207 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bob id: 1bob alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bob/nostruct-align/1bob.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bob/nostruct-align/1bob.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bob/nostruct-align/1bob.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14513/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.390137 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1boe id: 1boe alignment found: /projects/compbio/experiments/models.97/pdb/1b/1boe/nostruct-align/1boe.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1boe/nostruct-align/1boe.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1boe/nostruct-align/1boe.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17403/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.377136 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1boeA id: 1boeA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1boeA/nostruct-align/1boeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1boeA/nostruct-align/1boeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1boeA/nostruct-align/1boeA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7799/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.346130 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bolA id: 1bolA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bolA/nostruct-align/1bolA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bolA/nostruct-align/1bolA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bolA/nostruct-align/1bolA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20927/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.704163 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bom_1a1 id: 1bom_1a1 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bom_1a1/nostruct-align/1bom_1a1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bom_1a1/nostruct-align/1bom_1a1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bom_1a1/nostruct-align/1bom_1a1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25203/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.736145 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1booA id: 1booA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1booA/nostruct-align/1booA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1booA/nostruct-align/1booA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1booA/nostruct-align/1booA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5750/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.095154 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bor id: 1bor alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bor/nostruct-align/1bor.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bor/nostruct-align/1bor.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bor/nostruct-align/1bor.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5149/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.190125 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bouA id: 1bouA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bouA/nostruct-align/1bouA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bouA/nostruct-align/1bouA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bouA/nostruct-align/1bouA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27542/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.208191 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bouB id: 1bouB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bouB/nostruct-align/1bouB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bouB/nostruct-align/1bouB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bouB/nostruct-align/1bouB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13789/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.871155 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bovA id: 1bovA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bovA/nostruct-align/1bovA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bovA/nostruct-align/1bovA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bovA/nostruct-align/1bovA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1391/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.181152 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bowA id: 1bowA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bowA/nostruct-align/1bowA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bowA/nostruct-align/1bowA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bowA/nostruct-align/1bowA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19584/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.448181 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1boy id: 1boy alignment found: /projects/compbio/experiments/models.97/pdb/1b/1boy/nostruct-align/1boy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1boy/nostruct-align/1boy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1boy/nostruct-align/1boy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32434/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.812195 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bp1 id: 1bp1 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bp1/nostruct-align/1bp1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bp1/nostruct-align/1bp1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bp1/nostruct-align/1bp1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21216/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.718140 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bp3A id: 1bp3A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bp3A/nostruct-align/1bp3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bp3A/nostruct-align/1bp3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bp3A/nostruct-align/1bp3A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-29927/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.631104 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bp7A id: 1bp7A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bp7A/nostruct-align/1bp7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bp7A/nostruct-align/1bp7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bp7A/nostruct-align/1bp7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30375/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.493164 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bpi id: 1bpi alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bpi/nostruct-align/1bpi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bpi/nostruct-align/1bpi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bpi/nostruct-align/1bpi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10080/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.647156 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bpoA id: 1bpoA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bpoA/nostruct-align/1bpoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bpoA/nostruct-align/1bpoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bpoA/nostruct-align/1bpoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22669/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.583130 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bpv id: 1bpv alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bpv/nostruct-align/1bpv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bpv/nostruct-align/1bpv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bpv/nostruct-align/1bpv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32335/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.790161 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bpwA id: 1bpwA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bpwA/nostruct-align/1bpwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bpwA/nostruct-align/1bpwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bpwA/nostruct-align/1bpwA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13119/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.680176 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bpyA id: 1bpyA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bpyA/nostruct-align/1bpyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bpyA/nostruct-align/1bpyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bpyA/nostruct-align/1bpyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12898/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.066101 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bq3B id: 1bq3B alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bq3B/nostruct-align/1bq3B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bq3B/nostruct-align/1bq3B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bq3B/nostruct-align/1bq3B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8636/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.109192 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bqbA id: 1bqbA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqbA/nostruct-align/1bqbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqbA/nostruct-align/1bqbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bqbA/nostruct-align/1bqbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24020/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.975159 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bqcA id: 1bqcA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqcA/nostruct-align/1bqcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqcA/nostruct-align/1bqcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bqcA/nostruct-align/1bqcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14721/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.363159 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bqg id: 1bqg alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqg/nostruct-align/1bqg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqg/nostruct-align/1bqg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bqg/nostruct-align/1bqg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19450/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.808167 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bqhG id: 1bqhG alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqhG/nostruct-align/1bqhG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqhG/nostruct-align/1bqhG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bqhG/nostruct-align/1bqhG.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-28642/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.920166 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bqk id: 1bqk alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqk/nostruct-align/1bqk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqk/nostruct-align/1bqk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bqk/nostruct-align/1bqk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24395/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.850098 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bqsA id: 1bqsA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqsA/nostruct-align/1bqsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqsA/nostruct-align/1bqsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bqsA/nostruct-align/1bqsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31527/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.701111 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bqt id: 1bqt alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqt/nostruct-align/1bqt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqt/nostruct-align/1bqt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bqt/nostruct-align/1bqt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26192/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.948181 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bquA id: 1bquA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bquA/nostruct-align/1bquA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bquA/nostruct-align/1bquA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bquA/nostruct-align/1bquA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10450/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.732178 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bqv id: 1bqv alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqv/nostruct-align/1bqv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqv/nostruct-align/1bqv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bqv/nostruct-align/1bqv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9033/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.145142 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bqz id: 1bqz alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqz/nostruct-align/1bqz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqz/nostruct-align/1bqz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bqz/nostruct-align/1bqz.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1902/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.890137 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1br0A id: 1br0A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1br0A/nostruct-align/1br0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1br0A/nostruct-align/1br0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1br0A/nostruct-align/1br0A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1417/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.625122 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1br9 id: 1br9 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1br9/nostruct-align/1br9.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1br9/nostruct-align/1br9.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1br9/nostruct-align/1br9.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.496155 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1brd id: 1brd alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brd/nostruct-align/1brd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brd/nostruct-align/1brd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1brd/nostruct-align/1brd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16005/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.848145 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1brfA id: 1brfA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brfA/nostruct-align/1brfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brfA/nostruct-align/1brfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1brfA/nostruct-align/1brfA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20268/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.793152 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1brlA id: 1brlA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brlA/nostruct-align/1brlA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brlA/nostruct-align/1brlA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1brlA/nostruct-align/1brlA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27872/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.297119 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1brlB id: 1brlB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brlB/nostruct-align/1brlB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brlB/nostruct-align/1brlB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1brlB/nostruct-align/1brlB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4215/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.906128 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1brmA id: 1brmA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brmA/nostruct-align/1brmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brmA/nostruct-align/1brmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1brmA/nostruct-align/1brmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17158/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.469116 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1brnL id: 1brnL alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brnL/nostruct-align/1brnL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brnL/nostruct-align/1brnL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1brnL/nostruct-align/1brnL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-487/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.315125 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1broA id: 1broA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1broA/nostruct-align/1broA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1broA/nostruct-align/1broA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1broA/nostruct-align/1broA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5845/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.116150 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1brsD id: 1brsD alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brsD/nostruct-align/1brsD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brsD/nostruct-align/1brsD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1brsD/nostruct-align/1brsD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16147/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.984192 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1brt id: 1brt alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brt/nostruct-align/1brt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brt/nostruct-align/1brt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1brt/nostruct-align/1brt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16512/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.249146 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1brwA id: 1brwA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brwA/nostruct-align/1brwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brwA/nostruct-align/1brwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1brwA/nostruct-align/1brwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-462/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.810120 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1brz id: 1brz alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brz/nostruct-align/1brz.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brz/nostruct-align/1brz.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1brz/nostruct-align/1brz.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11504/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.454102 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bs0A id: 1bs0A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bs0A/nostruct-align/1bs0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bs0A/nostruct-align/1bs0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bs0A/nostruct-align/1bs0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22348/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.361145 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bs2A id: 1bs2A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bs2A/nostruct-align/1bs2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bs2A/nostruct-align/1bs2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bs2A/nostruct-align/1bs2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8598/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.887146 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bs4A id: 1bs4A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bs4A/nostruct-align/1bs4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bs4A/nostruct-align/1bs4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bs4A/nostruct-align/1bs4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1581/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.842163 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bs9 id: 1bs9 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bs9/nostruct-align/1bs9.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bs9/nostruct-align/1bs9.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bs9/nostruct-align/1bs9.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17640/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.212097 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bsg id: 1bsg alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bsg/nostruct-align/1bsg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bsg/nostruct-align/1bsg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bsg/nostruct-align/1bsg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6292/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.529114 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bsjA id: 1bsjA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bsjA/nostruct-align/1bsjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bsjA/nostruct-align/1bsjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bsjA/nostruct-align/1bsjA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4511/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.626099 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bsvA id: 1bsvA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bsvA/nostruct-align/1bsvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bsvA/nostruct-align/1bsvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bsvA/nostruct-align/1bsvA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27246/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.588135 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bt0A id: 1bt0A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bt0A/nostruct-align/1bt0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bt0A/nostruct-align/1bt0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bt0A/nostruct-align/1bt0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5132/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.802124 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bt3A id: 1bt3A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bt3A/nostruct-align/1bt3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bt3A/nostruct-align/1bt3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bt3A/nostruct-align/1bt3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15338/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.930115 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bt4 id: 1bt4 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bt4/nostruct-align/1bt4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bt4/nostruct-align/1bt4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bt4/nostruct-align/1bt4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4952/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.783142 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bteA id: 1bteA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bteA/nostruct-align/1bteA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bteA/nostruct-align/1bteA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bteA/nostruct-align/1bteA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3219/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.081116 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1btkA id: 1btkA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1btkA/nostruct-align/1btkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1btkA/nostruct-align/1btkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1btkA/nostruct-align/1btkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25630/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.638123 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1btkB id: 1btkB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1btkB/nostruct-align/1btkB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1btkB/nostruct-align/1btkB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1btkB/nostruct-align/1btkB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17925/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.917175 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1btl id: 1btl alignment found: /projects/compbio/experiments/models.97/pdb/1b/1btl/nostruct-align/1btl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1btl/nostruct-align/1btl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1btl/nostruct-align/1btl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12816/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.561157 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1btmA id: 1btmA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1btmA/nostruct-align/1btmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1btmA/nostruct-align/1btmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1btmA/nostruct-align/1btmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11806/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.981140 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1btn id: 1btn alignment found: /projects/compbio/experiments/models.97/pdb/1b/1btn/nostruct-align/1btn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1btn/nostruct-align/1btn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1btn/nostruct-align/1btn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7971/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.620117 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1btu id: 1btu alignment found: /projects/compbio/experiments/models.97/pdb/1b/1btu/nostruct-align/1btu.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1btu/nostruct-align/1btu.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1btu/nostruct-align/1btu.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8104/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.457153 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bu2A id: 1bu2A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bu2A/nostruct-align/1bu2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bu2A/nostruct-align/1bu2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bu2A/nostruct-align/1bu2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9841/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.274170 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bu5A id: 1bu5A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bu5A/nostruct-align/1bu5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bu5A/nostruct-align/1bu5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bu5A/nostruct-align/1bu5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28389/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.199158 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bu7A id: 1bu7A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bu7A/nostruct-align/1bu7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bu7A/nostruct-align/1bu7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bu7A/nostruct-align/1bu7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25461/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.856140 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bucA_1 id: 1bucA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bucA_1/nostruct-align/1bucA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bucA_1/nostruct-align/1bucA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bucA_1/nostruct-align/1bucA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6997/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.813171 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bucA_2 id: 1bucA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bucA_2/nostruct-align/1bucA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bucA_2/nostruct-align/1bucA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bucA_2/nostruct-align/1bucA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3266/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.407166 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1budA id: 1budA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1budA/nostruct-align/1budA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1budA/nostruct-align/1budA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1budA/nostruct-align/1budA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8180/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.635132 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bueA id: 1bueA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bueA/nostruct-align/1bueA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bueA/nostruct-align/1bueA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bueA/nostruct-align/1bueA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20962/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.568176 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1buhB id: 1buhB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1buhB/nostruct-align/1buhB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1buhB/nostruct-align/1buhB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1buhB/nostruct-align/1buhB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-30219/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.381104 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bunB id: 1bunB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bunB/nostruct-align/1bunB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bunB/nostruct-align/1bunB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bunB/nostruct-align/1bunB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9123/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.615112 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1buoA id: 1buoA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1buoA/nostruct-align/1buoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1buoA/nostruct-align/1buoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1buoA/nostruct-align/1buoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19655/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.090149 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bupA id: 1bupA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bupA/nostruct-align/1bupA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bupA/nostruct-align/1bupA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bupA/nostruct-align/1bupA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20569/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.991150 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1burA id: 1burA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1burA/nostruct-align/1burA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1burA/nostruct-align/1burA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1burA/nostruct-align/1burA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12463/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.776123 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1burS id: 1burS alignment found: /projects/compbio/experiments/models.97/pdb/1b/1burS/nostruct-align/1burS.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1burS/nostruct-align/1burS.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1burS/nostruct-align/1burS.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8745/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.096130 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bv1 id: 1bv1 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bv1/nostruct-align/1bv1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bv1/nostruct-align/1bv1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bv1/nostruct-align/1bv1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10465/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.732117 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bvb id: 1bvb alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bvb/nostruct-align/1bvb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvb/nostruct-align/1bvb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvb/nostruct-align/1bvb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29917/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.602173 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bvh id: 1bvh alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bvh/nostruct-align/1bvh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvh/nostruct-align/1bvh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvh/nostruct-align/1bvh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31528/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.009155 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bvp1 id: 1bvp1 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bvp1/nostruct-align/1bvp1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvp1/nostruct-align/1bvp1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvp1/nostruct-align/1bvp1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-566/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.022156 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bvp1_1 id: 1bvp1_1 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bvp1_1/nostruct-align/1bvp1_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bvp1_1/nostruct-align/1bvp1_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bvp1_1/nostruct-align/1bvp1_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2783/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.357178 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bvp1_2 id: 1bvp1_2 alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bvp1_2/nostruct-align/1bvp1_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bvp1_2/nostruct-align/1bvp1_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1b/1bvp1_2/nostruct-align/1bvp1_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5775/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.323181 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bvqA id: 1bvqA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-purr-12425/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.434143 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bvsB id: 1bvsB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bvsB/nostruct-align/1bvsB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvsB/nostruct-align/1bvsB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvsB/nostruct-align/1bvsB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-28136/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.888123 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bvwA id: 1bvwA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bvwA/nostruct-align/1bvwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvwA/nostruct-align/1bvwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvwA/nostruct-align/1bvwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17721/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.329163 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bvyF id: 1bvyF alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bvyF/nostruct-align/1bvyF.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvyF/nostruct-align/1bvyF.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvyF/nostruct-align/1bvyF.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5995/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.789185 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bvzA id: 1bvzA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bvzA/nostruct-align/1bvzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvzA/nostruct-align/1bvzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bvzA/nostruct-align/1bvzA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13879/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.240112 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bw0A id: 1bw0A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bw0A/nostruct-align/1bw0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bw0A/nostruct-align/1bw0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bw0A/nostruct-align/1bw0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17264/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.139099 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bw3 id: 1bw3 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bw3/nostruct-align/1bw3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bw3/nostruct-align/1bw3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bw3/nostruct-align/1bw3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10313/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.270142 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bw4 id: 1bw4 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bw4/nostruct-align/1bw4.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bw4/nostruct-align/1bw4.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bw4/nostruct-align/1bw4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15615/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.270142 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bw6 id: 1bw6 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bw6/nostruct-align/1bw6.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bw6/nostruct-align/1bw6.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bw6/nostruct-align/1bw6.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22183/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.179199 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bw6A id: 1bw6A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bw6A/nostruct-align/1bw6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bw6A/nostruct-align/1bw6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bw6A/nostruct-align/1bw6A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32560/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.179199 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bw8 id: 1bw8 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bw8/nostruct-align/1bw8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bw8/nostruct-align/1bw8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bw8/nostruct-align/1bw8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9134/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.147156 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bw8A id: 1bw8A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bw8A/nostruct-align/1bw8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bw8A/nostruct-align/1bw8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bw8A/nostruct-align/1bw8A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10963/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.375122 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bw9A id: 1bw9A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bw9A/nostruct-align/1bw9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bw9A/nostruct-align/1bw9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bw9A/nostruct-align/1bw9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24875/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.884094 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bwx id: 1bwx alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bwx/nostruct-align/1bwx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bwx/nostruct-align/1bwx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bwx/nostruct-align/1bwx.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25889/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.213135 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bwzA id: 1bwzA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bwzA/nostruct-align/1bwzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bwzA/nostruct-align/1bwzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bwzA/nostruct-align/1bwzA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14982/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.832153 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bx4A id: 1bx4A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bx4A/nostruct-align/1bx4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bx4A/nostruct-align/1bx4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bx4A/nostruct-align/1bx4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14484/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.310181 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bx7 id: 1bx7 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bx7/nostruct-align/1bx7.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bx7/nostruct-align/1bx7.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bx7/nostruct-align/1bx7.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20301/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.096130 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bxaA id: 1bxaA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxaA/nostruct-align/1bxaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxaA/nostruct-align/1bxaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxaA/nostruct-align/1bxaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10438/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.521118 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bxdA id: 1bxdA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxdA/nostruct-align/1bxdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxdA/nostruct-align/1bxdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxdA/nostruct-align/1bxdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12889/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.044128 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bxeA id: 1bxeA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxeA/nostruct-align/1bxeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxeA/nostruct-align/1bxeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxeA/nostruct-align/1bxeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10932/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.344177 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bxiB id: 1bxiB alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxiB/nostruct-align/1bxiB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxiB/nostruct-align/1bxiB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxiB/nostruct-align/1bxiB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13537/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.790161 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bxkA id: 1bxkA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxkA/nostruct-align/1bxkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxkA/nostruct-align/1bxkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxkA/nostruct-align/1bxkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15762/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.983154 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bxm id: 1bxm alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxm/nostruct-align/1bxm.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxm/nostruct-align/1bxm.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxm/nostruct-align/1bxm.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22237/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.323181 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bxoA id: 1bxoA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxoA/nostruct-align/1bxoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxoA/nostruct-align/1bxoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxoA/nostruct-align/1bxoA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24734/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.395142 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bxrA id: 1bxrA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxrA/nostruct-align/1bxrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxrA/nostruct-align/1bxrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxrA/nostruct-align/1bxrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10700/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.435181 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bxvA id: 1bxvA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxvA/nostruct-align/1bxvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxvA/nostruct-align/1bxvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxvA/nostruct-align/1bxvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12874/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.013123 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bxwA id: 1bxwA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxwA/nostruct-align/1bxwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxwA/nostruct-align/1bxwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxwA/nostruct-align/1bxwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24182/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.776123 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bxxA id: 1bxxA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxxA/nostruct-align/1bxxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxxA/nostruct-align/1bxxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxxA/nostruct-align/1bxxA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18767/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.375122 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bxyA id: 1bxyA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxyA/nostruct-align/1bxyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxyA/nostruct-align/1bxyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bxyA/nostruct-align/1bxyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27921/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.213135 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1by1A id: 1by1A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1by1A/nostruct-align/1by1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1by1A/nostruct-align/1by1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1by1A/nostruct-align/1by1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7753/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.130127 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1by2 id: 1by2 alignment found: /projects/compbio/experiments/models.97/pdb/1b/1by2/nostruct-align/1by2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1by2/nostruct-align/1by2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1by2/nostruct-align/1by2.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20476/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.535156 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1by3A id: 1by3A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1by3A/nostruct-align/1by3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1by3A/nostruct-align/1by3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1by3A/nostruct-align/1by3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7689/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.348145 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1by5A id: 1by5A alignment found: /projects/compbio/experiments/models.97/pdb/1b/1by5A/nostruct-align/1by5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1by5A/nostruct-align/1by5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1by5A/nostruct-align/1by5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11828/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.670166 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1byb id: 1byb alignment found: /projects/compbio/experiments/models.97/pdb/1b/1byb/nostruct-align/1byb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1byb/nostruct-align/1byb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1byb/nostruct-align/1byb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22858/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.686157 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1byfA id: 1byfA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1byfA/nostruct-align/1byfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1byfA/nostruct-align/1byfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1byfA/nostruct-align/1byfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11133/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.674133 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1byi id: 1byi alignment found: /projects/compbio/experiments/models.97/pdb/1b/1byi/nostruct-align/1byi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1byi/nostruct-align/1byi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1byi/nostruct-align/1byi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17034/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.662170 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bykA id: 1bykA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bykA/nostruct-align/1bykA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bykA/nostruct-align/1bykA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bykA/nostruct-align/1bykA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14429/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.710144 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1byl id: 1byl alignment found: /projects/compbio/experiments/models.97/pdb/1b/1byl/nostruct-align/1byl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1byl/nostruct-align/1byl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1byl/nostruct-align/1byl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10095/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.990112 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bylA id: 1bylA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bylA/nostruct-align/1bylA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bylA/nostruct-align/1bylA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bylA/nostruct-align/1bylA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21834/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.908142 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1byqA id: 1byqA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1byqA/nostruct-align/1byqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1byqA/nostruct-align/1byqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1byqA/nostruct-align/1byqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31735/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.307129 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1byrA id: 1byrA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1byrA/nostruct-align/1byrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1byrA/nostruct-align/1byrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1byrA/nostruct-align/1byrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14212/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.267151 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1byuA id: 1byuA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1byuA/nostruct-align/1byuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1byuA/nostruct-align/1byuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1byuA/nostruct-align/1byuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16592/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.768127 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bywA id: 1bywA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bywA/nostruct-align/1bywA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bywA/nostruct-align/1bywA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bywA/nostruct-align/1bywA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9970/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.547180 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bza id: 1bza alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bza/nostruct-align/1bza.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bza/nostruct-align/1bza.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bza/nostruct-align/1bza.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17884/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.622131 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bzb id: 1bzb alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bzb/nostruct-align/1bzb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bzb/nostruct-align/1bzb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bzb/nostruct-align/1bzb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23033/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.357178 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bzbA id: 1bzbA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bzbA/nostruct-align/1bzbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bzbA/nostruct-align/1bzbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bzbA/nostruct-align/1bzbA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8520/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.357178 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bzg id: 1bzg alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bzg/nostruct-align/1bzg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bzg/nostruct-align/1bzg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bzg/nostruct-align/1bzg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17568/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.233154 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bzk id: 1bzk alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bzk/nostruct-align/1bzk.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bzk/nostruct-align/1bzk.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bzk/nostruct-align/1bzk.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28700/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.949158 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bzkA id: 1bzkA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bzkA/nostruct-align/1bzkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bzkA/nostruct-align/1bzkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bzkA/nostruct-align/1bzkA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25522/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.932129 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bzpA id: 1bzpA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bzpA/nostruct-align/1bzpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bzpA/nostruct-align/1bzpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bzpA/nostruct-align/1bzpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-757/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.496155 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1bzyA id: 1bzyA alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bzyA/nostruct-align/1bzyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bzyA/nostruct-align/1bzyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1b/1bzyA/nostruct-align/1bzyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-361/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.962158 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c05A id: 1c05A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c05A/nostruct-align/1c05A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c05A/nostruct-align/1c05A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c05A/nostruct-align/1c05A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12670/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.631165 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c0aA id: 1c0aA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c0aA/nostruct-align/1c0aA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c0aA/nostruct-align/1c0aA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c0aA/nostruct-align/1c0aA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1110/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.995178 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c17M id: 1c17M alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c17M/nostruct-align/1c17M.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c17M/nostruct-align/1c17M.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c17M/nostruct-align/1c17M.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19730/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.899170 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c1gA id: 1c1gA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c1gA/nostruct-align/1c1gA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c1gA/nostruct-align/1c1gA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c1gA/nostruct-align/1c1gA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25137/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -24.822144 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c1gB id: 1c1gB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c1gB/nostruct-align/1c1gB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c1gB/nostruct-align/1c1gB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c1gB/nostruct-align/1c1gB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2366/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -24.822144 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c1gC id: 1c1gC alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c1gC/nostruct-align/1c1gC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c1gC/nostruct-align/1c1gC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c1gC/nostruct-align/1c1gC.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22600/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -24.325134 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c1gD id: 1c1gD alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c1gD/nostruct-align/1c1gD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c1gD/nostruct-align/1c1gD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c1gD/nostruct-align/1c1gD.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6484/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -24.325134 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c1kA id: 1c1kA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c1kA/nostruct-align/1c1kA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c1kA/nostruct-align/1c1kA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c1kA/nostruct-align/1c1kA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21328/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.332092 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c1lA id: 1c1lA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c1lA/nostruct-align/1c1lA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c1lA/nostruct-align/1c1lA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c1lA/nostruct-align/1c1lA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12688/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.304138 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c1yB id: 1c1yB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c1yB/nostruct-align/1c1yB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c1yB/nostruct-align/1c1yB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c1yB/nostruct-align/1c1yB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13302/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.298157 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c20A id: 1c20A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c20A/nostruct-align/1c20A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c20A/nostruct-align/1c20A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c20A/nostruct-align/1c20A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20363/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.861145 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c24A id: 1c24A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c24A/nostruct-align/1c24A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c24A/nostruct-align/1c24A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c24A/nostruct-align/1c24A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17903/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.088135 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c25 id: 1c25 alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c25/nostruct-align/1c25.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c25/nostruct-align/1c25.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c25/nostruct-align/1c25.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27876/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.565186 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c28A id: 1c28A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c28A/nostruct-align/1c28A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c28A/nostruct-align/1c28A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c28A/nostruct-align/1c28A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23878/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.372192 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c2aA id: 1c2aA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c2aA/nostruct-align/1c2aA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c2aA/nostruct-align/1c2aA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c2aA/nostruct-align/1c2aA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20035/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.413147 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c2rA id: 1c2rA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c2rA/nostruct-align/1c2rA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c2rA/nostruct-align/1c2rA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c2rA/nostruct-align/1c2rA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19741/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.787170 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c2uA id: 1c2uA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c2uA/nostruct-align/1c2uA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c2uA/nostruct-align/1c2uA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c2uA/nostruct-align/1c2uA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14482/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.318176 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c3cA id: 1c3cA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3cA/nostruct-align/1c3cA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3cA/nostruct-align/1c3cA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3cA/nostruct-align/1c3cA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25455/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.524170 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c3d id: 1c3d alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3d/nostruct-align/1c3d.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3d/nostruct-align/1c3d.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3d/nostruct-align/1c3d.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6653/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.257141 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c3jA id: 1c3jA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3jA/nostruct-align/1c3jA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3jA/nostruct-align/1c3jA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3jA/nostruct-align/1c3jA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32392/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.364136 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c3mA id: 1c3mA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3mA/nostruct-align/1c3mA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3mA/nostruct-align/1c3mA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3mA/nostruct-align/1c3mA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1999/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.726135 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c3oA id: 1c3oA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3oA/nostruct-align/1c3oA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3oA/nostruct-align/1c3oA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3oA/nostruct-align/1c3oA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13234/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.933167 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c3oB id: 1c3oB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3oB/nostruct-align/1c3oB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3oB/nostruct-align/1c3oB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3oB/nostruct-align/1c3oB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13021/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.613159 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c3oC id: 1c3oC alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3oC/nostruct-align/1c3oC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3oC/nostruct-align/1c3oC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3oC/nostruct-align/1c3oC.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27344/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.938171 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c3oE id: 1c3oE alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3oE/nostruct-align/1c3oE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3oE/nostruct-align/1c3oE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3oE/nostruct-align/1c3oE.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19143/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.786133 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c3oG id: 1c3oG alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3oG/nostruct-align/1c3oG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3oG/nostruct-align/1c3oG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3oG/nostruct-align/1c3oG.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2557/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.832153 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c3pA id: 1c3pA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3pA/nostruct-align/1c3pA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3pA/nostruct-align/1c3pA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3pA/nostruct-align/1c3pA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4873/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.039124 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c3qA id: 1c3qA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3qA/nostruct-align/1c3qA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3qA/nostruct-align/1c3qA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3qA/nostruct-align/1c3qA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27182/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.862183 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c3wA id: 1c3wA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3wA/nostruct-align/1c3wA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3wA/nostruct-align/1c3wA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3wA/nostruct-align/1c3wA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3687/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.397156 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c3yA id: 1c3yA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3yA/nostruct-align/1c3yA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3yA/nostruct-align/1c3yA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c3yA/nostruct-align/1c3yA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7822/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.371155 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c4eA id: 1c4eA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c4eA/nostruct-align/1c4eA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c4eA/nostruct-align/1c4eA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c4eA/nostruct-align/1c4eA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2446/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.054138 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c4xA id: 1c4xA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c4xA/nostruct-align/1c4xA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c4xA/nostruct-align/1c4xA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c4xA/nostruct-align/1c4xA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1651/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.974121 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c4zA id: 1c4zA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c4zA/nostruct-align/1c4zA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c4zA/nostruct-align/1c4zA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c4zA/nostruct-align/1c4zA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20381/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.021179 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c52 id: 1c52 alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c52/nostruct-align/1c52.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c52/nostruct-align/1c52.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c52/nostruct-align/1c52.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30475/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.114136 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c53 id: 1c53 alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c53/nostruct-align/1c53.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c53/nostruct-align/1c53.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c53/nostruct-align/1c53.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2769/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.307129 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c5a id: 1c5a alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c5a/nostruct-align/1c5a.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c5a/nostruct-align/1c5a.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c5a/nostruct-align/1c5a.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-2823/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.709167 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c5eA id: 1c5eA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c5eA/nostruct-align/1c5eA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c5eA/nostruct-align/1c5eA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c5eA/nostruct-align/1c5eA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10007/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.460144 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c75A id: 1c75A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c75A/nostruct-align/1c75A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c75A/nostruct-align/1c75A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c75A/nostruct-align/1c75A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16321/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.357178 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c8zA id: 1c8zA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c8zA/nostruct-align/1c8zA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c8zA/nostruct-align/1c8zA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c8zA/nostruct-align/1c8zA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16451/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.775146 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c94A id: 1c94A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c94A/nostruct-align/1c94A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c94A/nostruct-align/1c94A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c94A/nostruct-align/1c94A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6943/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.112183 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c9fA id: 1c9fA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c9fA/nostruct-align/1c9fA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c9fA/nostruct-align/1c9fA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c9fA/nostruct-align/1c9fA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9738/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.709106 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c9kB id: 1c9kB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c9kB/nostruct-align/1c9kB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c9kB/nostruct-align/1c9kB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c9kB/nostruct-align/1c9kB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22999/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.763123 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c9oA id: 1c9oA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c9oA/nostruct-align/1c9oA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c9oA/nostruct-align/1c9oA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c9oA/nostruct-align/1c9oA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10101/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.938171 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1c9uA id: 1c9uA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c9uA/nostruct-align/1c9uA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c9uA/nostruct-align/1c9uA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1c9uA/nostruct-align/1c9uA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19268/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.537109 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ca1 id: 1ca1 alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ca1/nostruct-align/1ca1.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ca1/nostruct-align/1ca1.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ca1/nostruct-align/1ca1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9816/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.640137 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ca4A id: 1ca4A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ca4A/nostruct-align/1ca4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ca4A/nostruct-align/1ca4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ca4A/nostruct-align/1ca4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20334/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.340149 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ca9A id: 1ca9A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ca9A/nostruct-align/1ca9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ca9A/nostruct-align/1ca9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ca9A/nostruct-align/1ca9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29274/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.718140 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1caj id: 1caj alignment found: /projects/compbio/experiments/models.97/pdb/1c/1caj/nostruct-align/1caj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1caj/nostruct-align/1caj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1caj/nostruct-align/1caj.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30674/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.703125 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cauA id: 1cauA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cauA/nostruct-align/1cauA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cauA/nostruct-align/1cauA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cauA/nostruct-align/1cauA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25294/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.362122 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cauB id: 1cauB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cauB/nostruct-align/1cauB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cauB/nostruct-align/1cauB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cauB/nostruct-align/1cauB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23282/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.441162 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cawB id: 1cawB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cawB/nostruct-align/1cawB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cawB/nostruct-align/1cawB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cawB/nostruct-align/1cawB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13400/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.812134 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1caxB id: 1caxB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1caxB/nostruct-align/1caxB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1caxB/nostruct-align/1caxB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1caxB/nostruct-align/1caxB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26345/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.686096 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cb0A id: 1cb0A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cb0A/nostruct-align/1cb0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cb0A/nostruct-align/1cb0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cb0A/nostruct-align/1cb0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26603/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.424194 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cb6A id: 1cb6A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cb6A/nostruct-align/1cb6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cb6A/nostruct-align/1cb6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cb6A/nostruct-align/1cb6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4671/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.380127 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cb7B id: 1cb7B alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cb7B/nostruct-align/1cb7B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cb7B/nostruct-align/1cb7B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cb7B/nostruct-align/1cb7B.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19122/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.099121 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cb8A id: 1cb8A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cb8A/nostruct-align/1cb8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cb8A/nostruct-align/1cb8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cb8A/nostruct-align/1cb8A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2719/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.136169 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cbf id: 1cbf alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cbf/nostruct-align/1cbf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cbf/nostruct-align/1cbf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cbf/nostruct-align/1cbf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21466/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.363159 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cbg id: 1cbg alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cbg/nostruct-align/1cbg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cbg/nostruct-align/1cbg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cbg/nostruct-align/1cbg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5977/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.475098 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cbh id: 1cbh alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cbh/nostruct-align/1cbh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cbh/nostruct-align/1cbh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cbh/nostruct-align/1cbh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18023/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.938171 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cbn id: 1cbn alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cbn/nostruct-align/1cbn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cbn/nostruct-align/1cbn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cbn/nostruct-align/1cbn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19424/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.999146 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cbp id: 1cbp alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cbp/nostruct-align/1cbp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cbp/nostruct-align/1cbp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cbp/nostruct-align/1cbp.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18202/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.889160 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cbs id: 1cbs alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cbs/nostruct-align/1cbs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cbs/nostruct-align/1cbs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cbs/nostruct-align/1cbs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-412/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.630127 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cbuA id: 1cbuA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cbuA/nostruct-align/1cbuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cbuA/nostruct-align/1cbuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cbuA/nostruct-align/1cbuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6165/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.763123 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cby id: 1cby alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cby/nostruct-align/1cby.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cby/nostruct-align/1cby.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cby/nostruct-align/1cby.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8991/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.270142 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cc5 id: 1cc5 alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cc5/nostruct-align/1cc5.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cc5/nostruct-align/1cc5.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cc5/nostruct-align/1cc5.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5459/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.557190 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cc8A id: 1cc8A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cc8A/nostruct-align/1cc8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cc8A/nostruct-align/1cc8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cc8A/nostruct-align/1cc8A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29328/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.496094 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ccr id: 1ccr alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ccr/nostruct-align/1ccr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ccr/nostruct-align/1ccr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ccr/nostruct-align/1ccr.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14887/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.659119 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ccwA id: 1ccwA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ccwA/nostruct-align/1ccwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ccwA/nostruct-align/1ccwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ccwA/nostruct-align/1ccwA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1785/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.322144 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ccwB id: 1ccwB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ccwB/nostruct-align/1ccwB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ccwB/nostruct-align/1ccwB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ccwB/nostruct-align/1ccwB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23017/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.099121 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cczA id: 1cczA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cczA/nostruct-align/1cczA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cczA/nostruct-align/1cczA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cczA/nostruct-align/1cczA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1782/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.202148 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cd1A id: 1cd1A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cd1A/nostruct-align/1cd1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cd1A/nostruct-align/1cd1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cd1A/nostruct-align/1cd1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8721/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.301147 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cd31 id: 1cd31 alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cd31/nostruct-align/1cd31.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cd31/nostruct-align/1cd31.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cd31/nostruct-align/1cd31.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17058/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.171143 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cd3B id: 1cd3B alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cd3B/nostruct-align/1cd3B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cd3B/nostruct-align/1cd3B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cd3B/nostruct-align/1cd3B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23258/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.776184 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cd8 id: 1cd8 alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cd8/nostruct-align/1cd8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cd8/nostruct-align/1cd8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cd8/nostruct-align/1cd8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20838/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.432190 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cd9C id: 1cd9C alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cd9C/nostruct-align/1cd9C.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cd9C/nostruct-align/1cd9C.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cd9C/nostruct-align/1cd9C.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32517/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.173096 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cdcA id: 1cdcA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdcA/nostruct-align/1cdcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdcA/nostruct-align/1cdcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cdcA/nostruct-align/1cdcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27370/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.011169 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cdcB id: 1cdcB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdcB/nostruct-align/1cdcB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdcB/nostruct-align/1cdcB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cdcB/nostruct-align/1cdcB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22765/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.022156 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cdg_1 id: 1cdg_1 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cdg_1/nostruct-align/1cdg_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cdg_1/nostruct-align/1cdg_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1cdg_1/nostruct-align/1cdg_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6722/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.623169 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cdg_2 id: 1cdg_2 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cdg_2/nostruct-align/1cdg_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cdg_2/nostruct-align/1cdg_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1cdg_2/nostruct-align/1cdg_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21082/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.520203 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cdg_3 id: 1cdg_3 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cdg_3/nostruct-align/1cdg_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cdg_3/nostruct-align/1cdg_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1cdg_3/nostruct-align/1cdg_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30634/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.026123 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cdg_4 id: 1cdg_4 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cdg_4/nostruct-align/1cdg_4.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cdg_4/nostruct-align/1cdg_4.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1cdg_4/nostruct-align/1cdg_4.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7233/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.601135 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cdi id: 1cdi alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdi/nostruct-align/1cdi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdi/nostruct-align/1cdi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cdi/nostruct-align/1cdi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26281/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.375122 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cdkA id: 1cdkA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdkA/nostruct-align/1cdkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdkA/nostruct-align/1cdkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cdkA/nostruct-align/1cdkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16105/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.246155 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cdp id: 1cdp alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdp/nostruct-align/1cdp.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdp/nostruct-align/1cdp.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cdp/nostruct-align/1cdp.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19312/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.346130 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cdq id: 1cdq alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdq/nostruct-align/1cdq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdq/nostruct-align/1cdq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cdq/nostruct-align/1cdq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9093/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.723145 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cds id: 1cds alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cds/nostruct-align/1cds.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cds/nostruct-align/1cds.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cds/nostruct-align/1cds.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13366/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.723145 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cdwA id: 1cdwA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdwA/nostruct-align/1cdwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdwA/nostruct-align/1cdwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cdwA/nostruct-align/1cdwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13494/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.968140 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cdy id: 1cdy alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdy/nostruct-align/1cdy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdy/nostruct-align/1cdy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cdy/nostruct-align/1cdy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17303/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.818115 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cdzA id: 1cdzA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdzA/nostruct-align/1cdzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdzA/nostruct-align/1cdzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cdzA/nostruct-align/1cdzA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-138/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.808167 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ce0A id: 1ce0A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ce0A/nostruct-align/1ce0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ce0A/nostruct-align/1ce0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ce0A/nostruct-align/1ce0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5605/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.037170 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ce3A id: 1ce3A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ce3A/nostruct-align/1ce3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ce3A/nostruct-align/1ce3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ce3A/nostruct-align/1ce3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12646/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.485168 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ce4A id: 1ce4A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ce4A/nostruct-align/1ce4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ce4A/nostruct-align/1ce4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ce4A/nostruct-align/1ce4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20294/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.508179 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ce9C id: 1ce9C alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ce9C/nostruct-align/1ce9C.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ce9C/nostruct-align/1ce9C.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ce9C/nostruct-align/1ce9C.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4846/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.117126 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cec id: 1cec alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cec/nostruct-align/1cec.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cec/nostruct-align/1cec.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cec/nostruct-align/1cec.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31869/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.270142 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ceeB id: 1ceeB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ceeB/nostruct-align/1ceeB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ceeB/nostruct-align/1ceeB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ceeB/nostruct-align/1ceeB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27195/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.664124 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cei id: 1cei alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cei/nostruct-align/1cei.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cei/nostruct-align/1cei.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cei/nostruct-align/1cei.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9886/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.479187 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1celA id: 1celA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1celA/nostruct-align/1celA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1celA/nostruct-align/1celA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1celA/nostruct-align/1celA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2441/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.887146 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cem id: 1cem alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cem/nostruct-align/1cem.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cem/nostruct-align/1cem.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cem/nostruct-align/1cem.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2306/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.673096 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ceo id: 1ceo alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ceo/nostruct-align/1ceo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ceo/nostruct-align/1ceo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ceo/nostruct-align/1ceo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1858/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.683167 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ceqA id: 1ceqA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ceqA/nostruct-align/1ceqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ceqA/nostruct-align/1ceqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ceqA/nostruct-align/1ceqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4193/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.696106 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ceuA id: 1ceuA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ceuA/nostruct-align/1ceuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ceuA/nostruct-align/1ceuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ceuA/nostruct-align/1ceuA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11768/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.606140 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cewI id: 1cewI alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cewI/nostruct-align/1cewI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cewI/nostruct-align/1cewI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cewI/nostruct-align/1cewI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14792/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.936157 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cex id: 1cex alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cex/nostruct-align/1cex.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cex/nostruct-align/1cex.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cex/nostruct-align/1cex.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7014/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.856140 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cezA id: 1cezA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cezA/nostruct-align/1cezA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cezA/nostruct-align/1cezA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cezA/nostruct-align/1cezA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1512/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.035156 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cf1A id: 1cf1A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cf1A/nostruct-align/1cf1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cf1A/nostruct-align/1cf1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cf1A/nostruct-align/1cf1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3292/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.936157 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cf4B id: 1cf4B alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cf4B/nostruct-align/1cf4B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cf4B/nostruct-align/1cf4B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cf4B/nostruct-align/1cf4B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27160/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.129150 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cf7A id: 1cf7A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cf7A/nostruct-align/1cf7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cf7A/nostruct-align/1cf7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cf7A/nostruct-align/1cf7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20396/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.952148 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cf7B id: 1cf7B alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cf7B/nostruct-align/1cf7B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cf7B/nostruct-align/1cf7B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cf7B/nostruct-align/1cf7B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22020/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.441101 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cf9A id: 1cf9A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cf9A/nostruct-align/1cf9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cf9A/nostruct-align/1cf9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cf9A/nostruct-align/1cf9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28520/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.926147 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cfb id: 1cfb alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cfb/nostruct-align/1cfb.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cfb/nostruct-align/1cfb.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cfb/nostruct-align/1cfb.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31449/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.253174 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cfb_1 id: 1cfb_1 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cfb_1/nostruct-align/1cfb_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cfb_1/nostruct-align/1cfb_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1cfb_1/nostruct-align/1cfb_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16029/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.124146 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cfb_2 id: 1cfb_2 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cfb_2/nostruct-align/1cfb_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cfb_2/nostruct-align/1cfb_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1cfb_2/nostruct-align/1cfb_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13622/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.235168 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cfe id: 1cfe alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cfe/nostruct-align/1cfe.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cfe/nostruct-align/1cfe.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cfe/nostruct-align/1cfe.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16086/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.971191 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cfh id: 1cfh alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cfh/nostruct-align/1cfh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cfh/nostruct-align/1cfh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cfh/nostruct-align/1cfh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21249/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.713135 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cfi id: 1cfi alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cfi/nostruct-align/1cfi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cfi/nostruct-align/1cfi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cfi/nostruct-align/1cfi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27664/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.713135 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cfr id: 1cfr alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cfr/nostruct-align/1cfr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cfr/nostruct-align/1cfr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cfr/nostruct-align/1cfr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12336/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.556152 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cfyA id: 1cfyA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cfyA/nostruct-align/1cfyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cfyA/nostruct-align/1cfyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cfyA/nostruct-align/1cfyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31258/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.910095 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cfzA id: 1cfzA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cfzA/nostruct-align/1cfzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cfzA/nostruct-align/1cfzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cfzA/nostruct-align/1cfzA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5535/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.980164 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cg2A id: 1cg2A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cg2A/nostruct-align/1cg2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cg2A/nostruct-align/1cg2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cg2A/nostruct-align/1cg2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9303/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.201172 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cg5A id: 1cg5A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cg5A/nostruct-align/1cg5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cg5A/nostruct-align/1cg5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cg5A/nostruct-align/1cg5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18448/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.533142 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cg5B id: 1cg5B alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cg5B/nostruct-align/1cg5B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cg5B/nostruct-align/1cg5B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cg5B/nostruct-align/1cg5B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27627/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.506104 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cgdA id: 1cgdA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cgdA/nostruct-align/1cgdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cgdA/nostruct-align/1cgdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cgdA/nostruct-align/1cgdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20496/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.122131 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cghA id: 1cghA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cghA/nostruct-align/1cghA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cghA/nostruct-align/1cghA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cghA/nostruct-align/1cghA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5529/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.494141 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cgo id: 1cgo alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cgo/nostruct-align/1cgo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cgo/nostruct-align/1cgo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cgo/nostruct-align/1cgo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31018/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.611145 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cgpA_1 id: 1cgpA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cgpA_1/nostruct-align/1cgpA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cgpA_1/nostruct-align/1cgpA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1cgpA_1/nostruct-align/1cgpA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14419/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.571167 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cgpA_2 id: 1cgpA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cgpA_2/nostruct-align/1cgpA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cgpA_2/nostruct-align/1cgpA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1cgpA_2/nostruct-align/1cgpA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-79/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.672119 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cgt id: 1cgt alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cgt/nostruct-align/1cgt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cgt/nostruct-align/1cgt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cgt/nostruct-align/1cgt.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28996/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.956116 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ch6A id: 1ch6A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ch6A/nostruct-align/1ch6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ch6A/nostruct-align/1ch6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ch6A/nostruct-align/1ch6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30360/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.156189 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1chc id: 1chc alignment found: /projects/compbio/experiments/models.97/pdb/1c/1chc/nostruct-align/1chc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1chc/nostruct-align/1chc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1chc/nostruct-align/1chc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19220/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.525146 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1chd id: 1chd alignment found: /projects/compbio/experiments/models.97/pdb/1c/1chd/nostruct-align/1chd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1chd/nostruct-align/1chd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1chd/nostruct-align/1chd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2692/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.960144 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1chkA id: 1chkA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1chkA/nostruct-align/1chkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1chkA/nostruct-align/1chkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1chkA/nostruct-align/1chkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8020/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.244141 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1chl id: 1chl alignment found: /projects/compbio/experiments/models.97/pdb/1c/1chl/nostruct-align/1chl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1chl/nostruct-align/1chl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1chl/nostruct-align/1chl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16478/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.981140 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1chmA id: 1chmA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1chmA/nostruct-align/1chmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1chmA/nostruct-align/1chmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1chmA/nostruct-align/1chmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20731/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.505127 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1chmA_1 id: 1chmA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1chmA_1/nostruct-align/1chmA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1chmA_1/nostruct-align/1chmA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1chmA_1/nostruct-align/1chmA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31669/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.066162 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1chmA_2 id: 1chmA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1chmA_2/nostruct-align/1chmA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1chmA_2/nostruct-align/1chmA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1chmA_2/nostruct-align/1chmA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12087/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.222107 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1chrA id: 1chrA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1chrA/nostruct-align/1chrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1chrA/nostruct-align/1chrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1chrA/nostruct-align/1chrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28523/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.170105 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1chuA id: 1chuA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1chuA/nostruct-align/1chuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1chuA/nostruct-align/1chuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1chuA/nostruct-align/1chuA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31770/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.702148 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ci0A id: 1ci0A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ci0A/nostruct-align/1ci0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ci0A/nostruct-align/1ci0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ci0A/nostruct-align/1ci0A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2075/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.627136 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cid id: 1cid alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cid/nostruct-align/1cid.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cid/nostruct-align/1cid.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cid/nostruct-align/1cid.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2756/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.604187 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cid_1 id: 1cid_1 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cid_1/nostruct-align/1cid_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cid_1/nostruct-align/1cid_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1cid_1/nostruct-align/1cid_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7983/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.453186 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cid_2 id: 1cid_2 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cid_2/nostruct-align/1cid_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cid_2/nostruct-align/1cid_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1cid_2/nostruct-align/1cid_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18117/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.514160 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cii id: 1cii alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cii/nostruct-align/1cii.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cii/nostruct-align/1cii.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cii/nostruct-align/1cii.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5395/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -19.762146 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cipA id: 1cipA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cipA/nostruct-align/1cipA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cipA/nostruct-align/1cipA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cipA/nostruct-align/1cipA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32633/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.607117 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ciy id: 1ciy alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ciy/nostruct-align/1ciy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ciy/nostruct-align/1ciy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ciy/nostruct-align/1ciy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15785/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.896179 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cjaA id: 1cjaA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cjaA/nostruct-align/1cjaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cjaA/nostruct-align/1cjaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cjaA/nostruct-align/1cjaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32497/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.230103 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cjcA id: 1cjcA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cjcA/nostruct-align/1cjcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cjcA/nostruct-align/1cjcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cjcA/nostruct-align/1cjcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16717/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.013123 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cjdA id: 1cjdA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cjdA/nostruct-align/1cjdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cjdA/nostruct-align/1cjdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cjdA/nostruct-align/1cjdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27269/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.922119 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cjsA id: 1cjsA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cjsA/nostruct-align/1cjsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cjsA/nostruct-align/1cjsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cjsA/nostruct-align/1cjsA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15488/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.388184 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cjwA id: 1cjwA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cjwA/nostruct-align/1cjwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cjwA/nostruct-align/1cjwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cjwA/nostruct-align/1cjwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30336/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.309143 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cjxA id: 1cjxA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cjxA/nostruct-align/1cjxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cjxA/nostruct-align/1cjxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cjxA/nostruct-align/1cjxA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27930/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.155151 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ck7A id: 1ck7A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ck7A/nostruct-align/1ck7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ck7A/nostruct-align/1ck7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ck7A/nostruct-align/1ck7A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4335/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.791138 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ck9A id: 1ck9A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ck9A/nostruct-align/1ck9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ck9A/nostruct-align/1ck9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ck9A/nostruct-align/1ck9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27430/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.365173 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ckaA id: 1ckaA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ckaA/nostruct-align/1ckaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ckaA/nostruct-align/1ckaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ckaA/nostruct-align/1ckaA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26720/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.929138 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ckeA id: 1ckeA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ckeA/nostruct-align/1ckeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ckeA/nostruct-align/1ckeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ckeA/nostruct-align/1ckeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-659/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.763184 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cklB id: 1cklB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cklB/nostruct-align/1cklB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cklB/nostruct-align/1cklB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cklB/nostruct-align/1cklB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14066/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.033142 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ckmA id: 1ckmA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ckmA/nostruct-align/1ckmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ckmA/nostruct-align/1ckmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ckmA/nostruct-align/1ckmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31731/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.244141 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cknA id: 1cknA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cknA/nostruct-align/1cknA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cknA/nostruct-align/1cknA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cknA/nostruct-align/1cknA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13387/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.995178 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ckqA id: 1ckqA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ckqA/nostruct-align/1ckqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ckqA/nostruct-align/1ckqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ckqA/nostruct-align/1ckqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18581/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.472107 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cktA id: 1cktA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cktA/nostruct-align/1cktA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cktA/nostruct-align/1cktA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cktA/nostruct-align/1cktA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25602/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.296204 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ckuA id: 1ckuA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ckuA/nostruct-align/1ckuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ckuA/nostruct-align/1ckuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ckuA/nostruct-align/1ckuA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7537/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.654175 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ckv id: 1ckv alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ckv/nostruct-align/1ckv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ckv/nostruct-align/1ckv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ckv/nostruct-align/1ckv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5672/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.609131 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cl1A id: 1cl1A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cl1A/nostruct-align/1cl1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cl1A/nostruct-align/1cl1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cl1A/nostruct-align/1cl1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-913/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.400146 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cl2A id: 1cl2A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cl2A/nostruct-align/1cl2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cl2A/nostruct-align/1cl2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cl2A/nostruct-align/1cl2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27932/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.852173 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cl4A id: 1cl4A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cl4A/nostruct-align/1cl4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cl4A/nostruct-align/1cl4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cl4A/nostruct-align/1cl4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6068/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.808167 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1clc id: 1clc alignment found: /projects/compbio/experiments/models.97/pdb/1c/1clc/nostruct-align/1clc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1clc/nostruct-align/1clc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1clc/nostruct-align/1clc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3775/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.425171 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1clc_1 id: 1clc_1 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1clc_1/nostruct-align/1clc_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1clc_1/nostruct-align/1clc_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1clc_1/nostruct-align/1clc_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6264/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.699097 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1clc_2 id: 1clc_2 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1clc_2/nostruct-align/1clc_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1clc_2/nostruct-align/1clc_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1clc_2/nostruct-align/1clc_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6347/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.204163 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cleA id: 1cleA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cleA/nostruct-align/1cleA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cleA/nostruct-align/1cleA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cleA/nostruct-align/1cleA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22723/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.035156 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cliA id: 1cliA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cliA/nostruct-align/1cliA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cliA/nostruct-align/1cliA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cliA/nostruct-align/1cliA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18183/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.939148 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cll id: 1cll alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cll/nostruct-align/1cll.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cll/nostruct-align/1cll.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cll/nostruct-align/1cll.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8311/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.311096 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1clqA id: 1clqA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1clqA/nostruct-align/1clqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1clqA/nostruct-align/1clqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1clqA/nostruct-align/1clqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31423/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.321167 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1clxA id: 1clxA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1clxA/nostruct-align/1clxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1clxA/nostruct-align/1clxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1clxA/nostruct-align/1clxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19992/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.061157 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cm4B id: 1cm4B alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cm4B/nostruct-align/1cm4B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cm4B/nostruct-align/1cm4B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cm4B/nostruct-align/1cm4B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17701/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.939148 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cm5A id: 1cm5A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cm5A/nostruct-align/1cm5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cm5A/nostruct-align/1cm5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cm5A/nostruct-align/1cm5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24430/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.084106 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cmaA id: 1cmaA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cmaA/nostruct-align/1cmaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cmaA/nostruct-align/1cmaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cmaA/nostruct-align/1cmaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4512/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.446167 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cmbA id: 1cmbA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cmbA/nostruct-align/1cmbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cmbA/nostruct-align/1cmbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cmbA/nostruct-align/1cmbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28897/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.436157 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cmkE id: 1cmkE alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cmkE/nostruct-align/1cmkE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cmkE/nostruct-align/1cmkE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cmkE/nostruct-align/1cmkE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10615/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.399170 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cmnA id: 1cmnA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cmnA/nostruct-align/1cmnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cmnA/nostruct-align/1cmnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cmnA/nostruct-align/1cmnA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16561/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.806091 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cmoA id: 1cmoA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cmoA/nostruct-align/1cmoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cmoA/nostruct-align/1cmoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cmoA/nostruct-align/1cmoA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21886/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.121155 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cmr id: 1cmr alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cmr/nostruct-align/1cmr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cmr/nostruct-align/1cmr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cmr/nostruct-align/1cmr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16633/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.413147 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cne id: 1cne alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cne/nostruct-align/1cne.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cne/nostruct-align/1cne.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cne/nostruct-align/1cne.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31429/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.064148 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cnr id: 1cnr alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cnr/nostruct-align/1cnr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cnr/nostruct-align/1cnr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cnr/nostruct-align/1cnr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31724/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.992126 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cnsA id: 1cnsA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cnsA/nostruct-align/1cnsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cnsA/nostruct-align/1cnsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cnsA/nostruct-align/1cnsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9285/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.074097 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cnt2 id: 1cnt2 alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cnt2/nostruct-align/1cnt2.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cnt2/nostruct-align/1cnt2.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cnt2/nostruct-align/1cnt2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1419/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.860168 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cnt3 id: 1cnt3 alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cnt3/nostruct-align/1cnt3.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cnt3/nostruct-align/1cnt3.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cnt3/nostruct-align/1cnt3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25906/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.925110 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cnv id: 1cnv alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cnv/nostruct-align/1cnv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cnv/nostruct-align/1cnv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cnv/nostruct-align/1cnv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28601/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.149170 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cnzA id: 1cnzA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cnzA/nostruct-align/1cnzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cnzA/nostruct-align/1cnzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cnzA/nostruct-align/1cnzA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5872/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.934143 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1co3A id: 1co3A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1co3A/nostruct-align/1co3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1co3A/nostruct-align/1co3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1co3A/nostruct-align/1co3A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13968/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.512146 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1co4A id: 1co4A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1co4A/nostruct-align/1co4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1co4A/nostruct-align/1co4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1co4A/nostruct-align/1co4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30213/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.063110 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1co6A id: 1co6A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1co6A/nostruct-align/1co6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1co6A/nostruct-align/1co6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1co6A/nostruct-align/1co6A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21051/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.335144 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1coaI id: 1coaI alignment found: /projects/compbio/experiments/models.97/pdb/1c/1coaI/nostruct-align/1coaI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1coaI/nostruct-align/1coaI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1coaI/nostruct-align/1coaI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20216/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.297180 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cof id: 1cof alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cof/nostruct-align/1cof.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cof/nostruct-align/1cof.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cof/nostruct-align/1cof.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12370/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.617188 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cojA id: 1cojA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cojA/nostruct-align/1cojA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cojA/nostruct-align/1cojA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cojA/nostruct-align/1cojA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32505/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.324158 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cokA id: 1cokA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cokA/nostruct-align/1cokA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cokA/nostruct-align/1cokA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cokA/nostruct-align/1cokA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23290/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.349182 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1colA id: 1colA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1colA/nostruct-align/1colA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1colA/nostruct-align/1colA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1colA/nostruct-align/1colA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20869/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.883118 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1coo id: 1coo alignment found: /projects/compbio/experiments/models.97/pdb/1c/1coo/nostruct-align/1coo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1coo/nostruct-align/1coo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1coo/nostruct-align/1coo.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12238/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.946106 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1copD id: 1copD alignment found: /projects/compbio/experiments/models.97/pdb/1c/1copD/nostruct-align/1copD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1copD/nostruct-align/1copD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1copD/nostruct-align/1copD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22343/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.871155 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cor id: 1cor alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cor/nostruct-align/1cor.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cor/nostruct-align/1cor.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cor/nostruct-align/1cor.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-637/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.233154 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cot id: 1cot alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cot/nostruct-align/1cot.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cot/nostruct-align/1cot.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cot/nostruct-align/1cot.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1510/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.535156 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1coy_1 id: 1coy_1 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1coy_1/nostruct-align/1coy_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1coy_1/nostruct-align/1coy_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1coy_1/nostruct-align/1coy_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4752/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.339172 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1coy_2 id: 1coy_2 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1coy_2/nostruct-align/1coy_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1coy_2/nostruct-align/1coy_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1coy_2/nostruct-align/1coy_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23681/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.637146 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cozA id: 1cozA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cozA/nostruct-align/1cozA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cozA/nostruct-align/1cozA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cozA/nostruct-align/1cozA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6533/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.810181 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cp2A id: 1cp2A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cp2A/nostruct-align/1cp2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cp2A/nostruct-align/1cp2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cp2A/nostruct-align/1cp2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2001/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.275146 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cpcA id: 1cpcA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cpcA/nostruct-align/1cpcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cpcA/nostruct-align/1cpcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cpcA/nostruct-align/1cpcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8245/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.244141 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cpcB id: 1cpcB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cpcB/nostruct-align/1cpcB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cpcB/nostruct-align/1cpcB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cpcB/nostruct-align/1cpcB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28938/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.297119 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cpcL id: 1cpcL alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cpcL/nostruct-align/1cpcL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cpcL/nostruct-align/1cpcL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cpcL/nostruct-align/1cpcL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4695/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.277100 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cpn id: 1cpn alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cpn/nostruct-align/1cpn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cpn/nostruct-align/1cpn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cpn/nostruct-align/1cpn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24682/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.860168 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cpo id: 1cpo alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cpo/nostruct-align/1cpo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cpo/nostruct-align/1cpo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cpo/nostruct-align/1cpo.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15331/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.319153 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cpq id: 1cpq alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cpq/nostruct-align/1cpq.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cpq/nostruct-align/1cpq.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cpq/nostruct-align/1cpq.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11481/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.422119 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cpt id: 1cpt alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cpt/nostruct-align/1cpt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cpt/nostruct-align/1cpt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cpt/nostruct-align/1cpt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20895/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.959167 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cq3A id: 1cq3A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cq3A/nostruct-align/1cq3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cq3A/nostruct-align/1cq3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cq3A/nostruct-align/1cq3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6918/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.986145 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cqeA id: 1cqeA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cqeA/nostruct-align/1cqeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cqeA/nostruct-align/1cqeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cqeA/nostruct-align/1cqeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25907/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.332153 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cqkA id: 1cqkA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cqkA/nostruct-align/1cqkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cqkA/nostruct-align/1cqkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cqkA/nostruct-align/1cqkA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7787/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.411133 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cqqA id: 1cqqA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cqqA/nostruct-align/1cqqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cqqA/nostruct-align/1cqqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cqqA/nostruct-align/1cqqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3994/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.456177 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cqwA id: 1cqwA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cqwA/nostruct-align/1cqwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cqwA/nostruct-align/1cqwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cqwA/nostruct-align/1cqwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8455/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.111145 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cqxA id: 1cqxA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cqxA/nostruct-align/1cqxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cqxA/nostruct-align/1cqxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cqxA/nostruct-align/1cqxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18855/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.830139 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cqyA id: 1cqyA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cqyA/nostruct-align/1cqyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cqyA/nostruct-align/1cqyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cqyA/nostruct-align/1cqyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14160/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.908142 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cr1A id: 1cr1A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cr1A/nostruct-align/1cr1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cr1A/nostruct-align/1cr1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cr1A/nostruct-align/1cr1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3998/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.119141 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cr5A id: 1cr5A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cr5A/nostruct-align/1cr5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cr5A/nostruct-align/1cr5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cr5A/nostruct-align/1cr5A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17304/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.528137 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cr6B id: 1cr6B alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cr6B/nostruct-align/1cr6B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cr6B/nostruct-align/1cr6B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cr6B/nostruct-align/1cr6B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16293/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.224121 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1crl id: 1crl alignment found: /projects/compbio/experiments/models.97/pdb/1c/1crl/nostruct-align/1crl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1crl/nostruct-align/1crl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1crl/nostruct-align/1crl.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16110/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.355164 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cruA id: 1cruA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cruA/nostruct-align/1cruA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cruA/nostruct-align/1cruA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cruA/nostruct-align/1cruA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9266/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.447144 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cs0B id: 1cs0B alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cs0B/nostruct-align/1cs0B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cs0B/nostruct-align/1cs0B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cs0B/nostruct-align/1cs0B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5289/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.084106 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cs0C id: 1cs0C alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cs0C/nostruct-align/1cs0C.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cs0C/nostruct-align/1cs0C.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cs0C/nostruct-align/1cs0C.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17495/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.454163 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cs1A id: 1cs1A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cs1A/nostruct-align/1cs1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cs1A/nostruct-align/1cs1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cs1A/nostruct-align/1cs1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5073/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.589111 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cs6A id: 1cs6A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cs6A/nostruct-align/1cs6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cs6A/nostruct-align/1cs6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cs6A/nostruct-align/1cs6A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23053/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.816101 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cs8A id: 1cs8A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cs8A/nostruct-align/1cs8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cs8A/nostruct-align/1cs8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cs8A/nostruct-align/1cs8A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file ./tmp/tmp-build-weighted-model-alpha-6366/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.163147 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1csbB id: 1csbB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1csbB/nostruct-align/1csbB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1csbB/nostruct-align/1csbB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1csbB/nostruct-align/1csbB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26953/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.917114 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cseE id: 1cseE alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cseE/nostruct-align/1cseE.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cseE/nostruct-align/1cseE.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cseE/nostruct-align/1cseE.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9337/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.484131 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cseI id: 1cseI alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cseI/nostruct-align/1cseI.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cseI/nostruct-align/1cseI.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cseI/nostruct-align/1cseI.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7982/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.288147 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1csgA id: 1csgA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1csgA/nostruct-align/1csgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1csgA/nostruct-align/1csgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1csgA/nostruct-align/1csgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16182/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.248169 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1csh id: 1csh alignment found: /projects/compbio/experiments/models.97/pdb/1c/1csh/nostruct-align/1csh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1csh/nostruct-align/1csh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1csh/nostruct-align/1csh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24820/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.787170 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cskA id: 1cskA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cskA/nostruct-align/1cskA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cskA/nostruct-align/1cskA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cskA/nostruct-align/1cskA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-24476/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.659180 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1csmA id: 1csmA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1csmA/nostruct-align/1csmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1csmA/nostruct-align/1csmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1csmA/nostruct-align/1csmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22790/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.589172 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1csn id: 1csn alignment found: /projects/compbio/experiments/models.97/pdb/1c/1csn/nostruct-align/1csn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1csn/nostruct-align/1csn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1csn/nostruct-align/1csn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21490/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.100159 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ct5A id: 1ct5A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ct5A/nostruct-align/1ct5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ct5A/nostruct-align/1ct5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ct5A/nostruct-align/1ct5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4571/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.995117 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ct7A id: 1ct7A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ct7A/nostruct-align/1ct7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ct7A/nostruct-align/1ct7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ct7A/nostruct-align/1ct7A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.268127 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ct9A id: 1ct9A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ct9A/nostruct-align/1ct9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ct9A/nostruct-align/1ct9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ct9A/nostruct-align/1ct9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15376/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.551147 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ctdA id: 1ctdA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ctdA/nostruct-align/1ctdA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ctdA/nostruct-align/1ctdA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ctdA/nostruct-align/1ctdA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30572/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.340149 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ctf id: 1ctf alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ctf/nostruct-align/1ctf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ctf/nostruct-align/1ctf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ctf/nostruct-align/1ctf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14236/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.395203 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ctj id: 1ctj alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ctj/nostruct-align/1ctj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ctj/nostruct-align/1ctj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ctj/nostruct-align/1ctj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8052/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.565125 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ctl id: 1ctl alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ctl/nostruct-align/1ctl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ctl/nostruct-align/1ctl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ctl/nostruct-align/1ctl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14412/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.961121 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ctl_1 id: 1ctl_1 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctl_1/nostruct-align/1ctl_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctl_1/nostruct-align/1ctl_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1ctl_1/nostruct-align/1ctl_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24843/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.665100 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ctl_2 id: 1ctl_2 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctl_2/nostruct-align/1ctl_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctl_2/nostruct-align/1ctl_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1ctl_2/nostruct-align/1ctl_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7934/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.825134 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ctm_1 id: 1ctm_1 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctm_1/nostruct-align/1ctm_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctm_1/nostruct-align/1ctm_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1ctm_1/nostruct-align/1ctm_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27635/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.838135 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ctm_2 id: 1ctm_2 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctm_2/nostruct-align/1ctm_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctm_2/nostruct-align/1ctm_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1ctm_2/nostruct-align/1ctm_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19289/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.634155 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ctn id: 1ctn alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ctn/nostruct-align/1ctn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ctn/nostruct-align/1ctn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ctn/nostruct-align/1ctn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16543/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.625122 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ctn_1 id: 1ctn_1 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctn_1/nostruct-align/1ctn_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctn_1/nostruct-align/1ctn_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1ctn_1/nostruct-align/1ctn_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31062/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.659180 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ctn_2 id: 1ctn_2 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctn_2/nostruct-align/1ctn_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctn_2/nostruct-align/1ctn_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1ctn_2/nostruct-align/1ctn_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10081/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.257141 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ctn_3 id: 1ctn_3 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctn_3/nostruct-align/1ctn_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctn_3/nostruct-align/1ctn_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1ctn_3/nostruct-align/1ctn_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31691/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.031128 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cto id: 1cto alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cto/nostruct-align/1cto.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cto/nostruct-align/1cto.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cto/nostruct-align/1cto.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25418/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.393127 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ctqA id: 1ctqA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ctqA/nostruct-align/1ctqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ctqA/nostruct-align/1ctqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ctqA/nostruct-align/1ctqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11776/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.398132 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ctt id: 1ctt alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ctt/nostruct-align/1ctt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ctt/nostruct-align/1ctt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1ctt/nostruct-align/1ctt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7725/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.186157 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ctt_1 id: 1ctt_1 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctt_1/nostruct-align/1ctt_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctt_1/nostruct-align/1ctt_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1ctt_1/nostruct-align/1ctt_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13821/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.273132 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ctt_2 id: 1ctt_2 alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctt_2/nostruct-align/1ctt_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctt_2/nostruct-align/1ctt_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1c/1ctt_2/nostruct-align/1ctt_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21328/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.764160 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cunA id: 1cunA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cunA/nostruct-align/1cunA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cunA/nostruct-align/1cunA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cunA/nostruct-align/1cunA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9157/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -16.035156 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cur id: 1cur alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cur/nostruct-align/1cur.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cur/nostruct-align/1cur.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cur/nostruct-align/1cur.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32558/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.004089 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cus id: 1cus alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cus/nostruct-align/1cus.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cus/nostruct-align/1cus.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cus/nostruct-align/1cus.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7235/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.489136 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cv8 id: 1cv8 alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cv8/nostruct-align/1cv8.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cv8/nostruct-align/1cv8.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cv8/nostruct-align/1cv8.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-247/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.674194 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cviA id: 1cviA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cviA/nostruct-align/1cviA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cviA/nostruct-align/1cviA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cviA/nostruct-align/1cviA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29151/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.722107 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cvjB id: 1cvjB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cvjB/nostruct-align/1cvjB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cvjB/nostruct-align/1cvjB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cvjB/nostruct-align/1cvjB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23791/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.274170 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cvl id: 1cvl alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cvl/nostruct-align/1cvl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cvl/nostruct-align/1cvl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cvl/nostruct-align/1cvl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29581/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.078186 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cvrA id: 1cvrA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cvrA/nostruct-align/1cvrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cvrA/nostruct-align/1cvrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cvrA/nostruct-align/1cvrA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9261/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.405151 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cvsC id: 1cvsC alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cvsC/nostruct-align/1cvsC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cvsC/nostruct-align/1cvsC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cvsC/nostruct-align/1cvsC.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5087/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -18.119202 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cw5A id: 1cw5A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cw5A/nostruct-align/1cw5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cw5A/nostruct-align/1cw5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cw5A/nostruct-align/1cw5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20594/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.005127 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cwpA id: 1cwpA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cwpA/nostruct-align/1cwpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cwpA/nostruct-align/1cwpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cwpA/nostruct-align/1cwpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28663/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.918152 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cwvA id: 1cwvA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cwvA/nostruct-align/1cwvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cwvA/nostruct-align/1cwvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cwvA/nostruct-align/1cwvA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15289/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.905151 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cwxA id: 1cwxA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cwxA/nostruct-align/1cwxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cwxA/nostruct-align/1cwxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cwxA/nostruct-align/1cwxA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6324/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.604187 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cx8B id: 1cx8B alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cx8B/nostruct-align/1cx8B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cx8B/nostruct-align/1cx8B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cx8B/nostruct-align/1cx8B.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19572/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.371155 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cxlA id: 1cxlA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cxlA/nostruct-align/1cxlA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cxlA/nostruct-align/1cxlA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cxlA/nostruct-align/1cxlA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2159/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.379150 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cxpA id: 1cxpA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cxpA/nostruct-align/1cxpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cxpA/nostruct-align/1cxpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cxpA/nostruct-align/1cxpA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26891/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.488159 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cxpC id: 1cxpC alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cxpC/nostruct-align/1cxpC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cxpC/nostruct-align/1cxpC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cxpC/nostruct-align/1cxpC.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6616/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.197144 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cxqA id: 1cxqA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cxqA/nostruct-align/1cxqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cxqA/nostruct-align/1cxqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cxqA/nostruct-align/1cxqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13348/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.751160 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cxwA id: 1cxwA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cxwA/nostruct-align/1cxwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cxwA/nostruct-align/1cxwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cxwA/nostruct-align/1cxwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27852/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.392151 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cxyA id: 1cxyA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cxyA/nostruct-align/1cxyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cxyA/nostruct-align/1cxyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cxyA/nostruct-align/1cxyA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28806/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.374146 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cxzB id: 1cxzB alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cxzB/nostruct-align/1cxzB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cxzB/nostruct-align/1cxzB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cxzB/nostruct-align/1cxzB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1587/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.850098 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cy5A id: 1cy5A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cy5A/nostruct-align/1cy5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cy5A/nostruct-align/1cy5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cy5A/nostruct-align/1cy5A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3972/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.893188 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cydA id: 1cydA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cydA/nostruct-align/1cydA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cydA/nostruct-align/1cydA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cydA/nostruct-align/1cydA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10775/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.511108 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cyi id: 1cyi alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cyi/nostruct-align/1cyi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cyi/nostruct-align/1cyi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cyi/nostruct-align/1cyi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6451/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.495117 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cyj id: 1cyj alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cyj/nostruct-align/1cyj.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cyj/nostruct-align/1cyj.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cyj/nostruct-align/1cyj.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16031/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.879150 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cyo id: 1cyo alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cyo/nostruct-align/1cyo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cyo/nostruct-align/1cyo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cyo/nostruct-align/1cyo.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31848/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.564148 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cyx id: 1cyx alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cyx/nostruct-align/1cyx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cyx/nostruct-align/1cyx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cyx/nostruct-align/1cyx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21772/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.691101 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cz1A id: 1cz1A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cz1A/nostruct-align/1cz1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cz1A/nostruct-align/1cz1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cz1A/nostruct-align/1cz1A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12171/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.391174 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cz4A id: 1cz4A alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cz4A/nostruct-align/1cz4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cz4A/nostruct-align/1cz4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cz4A/nostruct-align/1cz4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23148/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.581116 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1czfA id: 1czfA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1czfA/nostruct-align/1czfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1czfA/nostruct-align/1czfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1czfA/nostruct-align/1czfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12403/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.800171 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1czpA id: 1czpA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1czpA/nostruct-align/1czpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1czpA/nostruct-align/1czpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1czpA/nostruct-align/1czpA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16549/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.889160 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1czqA id: 1czqA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1czqA/nostruct-align/1czqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1czqA/nostruct-align/1czqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1czqA/nostruct-align/1czqA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2950/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.547119 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1czsA id: 1czsA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1czsA/nostruct-align/1czsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1czsA/nostruct-align/1czsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1czsA/nostruct-align/1czsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10593/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.539185 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1cztA id: 1cztA alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cztA/nostruct-align/1cztA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cztA/nostruct-align/1cztA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1c/1cztA/nostruct-align/1cztA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7850/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.539185 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d02A id: 1d02A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d02A/nostruct-align/1d02A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d02A/nostruct-align/1d02A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d02A/nostruct-align/1d02A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7351/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.676147 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d0aB id: 1d0aB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d0aB/nostruct-align/1d0aB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d0aB/nostruct-align/1d0aB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d0aB/nostruct-align/1d0aB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6558/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.056152 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d0bA id: 1d0bA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d0bA/nostruct-align/1d0bA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d0bA/nostruct-align/1d0bA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d0bA/nostruct-align/1d0bA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27614/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.819153 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d0nA id: 1d0nA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d0nA/nostruct-align/1d0nA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d0nA/nostruct-align/1d0nA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d0nA/nostruct-align/1d0nA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7519/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.248108 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d0qA id: 1d0qA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d0qA/nostruct-align/1d0qA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d0qA/nostruct-align/1d0qA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d0qA/nostruct-align/1d0qA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27288/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.306152 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d0vA id: 1d0vA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d0vA/nostruct-align/1d0vA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d0vA/nostruct-align/1d0vA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d0vA/nostruct-align/1d0vA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30056/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.452148 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d1dA id: 1d1dA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d1dA/nostruct-align/1d1dA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d1dA/nostruct-align/1d1dA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d1dA/nostruct-align/1d1dA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30604/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.683167 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d1gA id: 1d1gA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d1gA/nostruct-align/1d1gA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d1gA/nostruct-align/1d1gA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d1gA/nostruct-align/1d1gA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20223/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.096130 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d1qA id: 1d1qA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d1qA/nostruct-align/1d1qA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d1qA/nostruct-align/1d1qA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d1qA/nostruct-align/1d1qA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21718/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.282104 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d1rA id: 1d1rA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d1rA/nostruct-align/1d1rA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d1rA/nostruct-align/1d1rA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d1rA/nostruct-align/1d1rA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14140/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.360107 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d2fA id: 1d2fA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d2fA/nostruct-align/1d2fA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d2fA/nostruct-align/1d2fA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d2fA/nostruct-align/1d2fA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13799/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.207092 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d2iA id: 1d2iA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d2iA/nostruct-align/1d2iA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d2iA/nostruct-align/1d2iA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d2iA/nostruct-align/1d2iA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10098/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.257141 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d2mA id: 1d2mA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d2mA/nostruct-align/1d2mA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d2mA/nostruct-align/1d2mA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d2mA/nostruct-align/1d2mA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32584/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.967102 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d2nA id: 1d2nA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d2nA/nostruct-align/1d2nA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d2nA/nostruct-align/1d2nA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d2nA/nostruct-align/1d2nA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16894/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.688171 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d2rB id: 1d2rB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d2rB/nostruct-align/1d2rB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d2rB/nostruct-align/1d2rB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d2rB/nostruct-align/1d2rB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19507/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.803101 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d2vA id: 1d2vA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d2vA/nostruct-align/1d2vA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d2vA/nostruct-align/1d2vA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d2vA/nostruct-align/1d2vA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25692/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.488159 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d2zA id: 1d2zA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d2zA/nostruct-align/1d2zA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d2zA/nostruct-align/1d2zA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d2zA/nostruct-align/1d2zA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10478/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.238098 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d2zB id: 1d2zB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d2zB/nostruct-align/1d2zB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d2zB/nostruct-align/1d2zB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d2zB/nostruct-align/1d2zB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3650/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.586182 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d3bA id: 1d3bA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d3bA/nostruct-align/1d3bA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d3bA/nostruct-align/1d3bA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d3bA/nostruct-align/1d3bA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24337/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.488159 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d3bB id: 1d3bB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d3bB/nostruct-align/1d3bB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d3bB/nostruct-align/1d3bB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d3bB/nostruct-align/1d3bB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20310/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.437134 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d3vA id: 1d3vA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d3vA/nostruct-align/1d3vA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d3vA/nostruct-align/1d3vA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d3vA/nostruct-align/1d3vA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18833/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.676147 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d3yA id: 1d3yA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d3yA/nostruct-align/1d3yA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d3yA/nostruct-align/1d3yA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d3yA/nostruct-align/1d3yA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14417/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.006165 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d4aA id: 1d4aA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d4aA/nostruct-align/1d4aA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d4aA/nostruct-align/1d4aA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d4aA/nostruct-align/1d4aA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22445/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.944153 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d4bA id: 1d4bA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d4bA/nostruct-align/1d4bA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d4bA/nostruct-align/1d4bA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d4bA/nostruct-align/1d4bA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29648/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.169128 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d4oA id: 1d4oA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d4oA/nostruct-align/1d4oA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d4oA/nostruct-align/1d4oA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d4oA/nostruct-align/1d4oA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14434/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.106140 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d4qA id: 1d4qA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d4qA/nostruct-align/1d4qA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d4qA/nostruct-align/1d4qA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d4qA/nostruct-align/1d4qA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26334/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.942139 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d4tA id: 1d4tA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d4tA/nostruct-align/1d4tA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d4tA/nostruct-align/1d4tA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d4tA/nostruct-align/1d4tA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3343/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.392151 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d4vA id: 1d4vA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d4vA/nostruct-align/1d4vA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d4vA/nostruct-align/1d4vA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d4vA/nostruct-align/1d4vA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20440/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.280151 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d4vB id: 1d4vB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d4vB/nostruct-align/1d4vB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d4vB/nostruct-align/1d4vB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d4vB/nostruct-align/1d4vB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24964/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.604126 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d5nA id: 1d5nA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d5nA/nostruct-align/1d5nA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d5nA/nostruct-align/1d5nA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d5nA/nostruct-align/1d5nA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14737/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.280151 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d5rA id: 1d5rA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d5rA/nostruct-align/1d5rA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d5rA/nostruct-align/1d5rA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d5rA/nostruct-align/1d5rA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9988/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.050110 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d5yA id: 1d5yA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d5yA/nostruct-align/1d5yA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d5yA/nostruct-align/1d5yA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d5yA/nostruct-align/1d5yA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12961/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.748169 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d66A id: 1d66A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d66A/nostruct-align/1d66A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d66A/nostruct-align/1d66A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d66A/nostruct-align/1d66A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9825/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.593140 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d66A_1 id: 1d66A_1 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1d66A_1/nostruct-align/1d66A_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1d66A_1/nostruct-align/1d66A_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1d66A_1/nostruct-align/1d66A_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29596/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.668152 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d6aB id: 1d6aB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d6aB/nostruct-align/1d6aB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d6aB/nostruct-align/1d6aB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d6aB/nostruct-align/1d6aB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18205/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.203186 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d6gA id: 1d6gA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d6gA/nostruct-align/1d6gA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d6gA/nostruct-align/1d6gA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d6gA/nostruct-align/1d6gA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18934/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.760132 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d6jA id: 1d6jA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d6jA/nostruct-align/1d6jA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d6jA/nostruct-align/1d6jA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d6jA/nostruct-align/1d6jA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16407/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.226135 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d7mA id: 1d7mA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d7mA/nostruct-align/1d7mA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d7mA/nostruct-align/1d7mA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d7mA/nostruct-align/1d7mA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24193/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.149170 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d7oA id: 1d7oA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d7oA/nostruct-align/1d7oA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d7oA/nostruct-align/1d7oA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d7oA/nostruct-align/1d7oA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7849/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.394104 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d7qA id: 1d7qA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d7qA/nostruct-align/1d7qA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d7qA/nostruct-align/1d7qA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d7qA/nostruct-align/1d7qA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16566/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.631104 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d7uA id: 1d7uA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d7uA/nostruct-align/1d7uA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d7uA/nostruct-align/1d7uA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d7uA/nostruct-align/1d7uA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7920/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.249146 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d8bA id: 1d8bA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d8bA/nostruct-align/1d8bA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d8bA/nostruct-align/1d8bA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d8bA/nostruct-align/1d8bA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18683/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.756165 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d8cA id: 1d8cA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d8cA/nostruct-align/1d8cA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d8cA/nostruct-align/1d8cA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d8cA/nostruct-align/1d8cA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20951/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.147156 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d8dB id: 1d8dB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d8dB/nostruct-align/1d8dB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d8dB/nostruct-align/1d8dB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d8dB/nostruct-align/1d8dB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17162/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.077148 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d8iA id: 1d8iA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d8iA/nostruct-align/1d8iA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d8iA/nostruct-align/1d8iA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d8iA/nostruct-align/1d8iA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31426/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.821106 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d8jA id: 1d8jA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d8jA/nostruct-align/1d8jA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d8jA/nostruct-align/1d8jA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d8jA/nostruct-align/1d8jA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-678/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.723145 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d9bA id: 1d9bA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d9bA/nostruct-align/1d9bA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d9bA/nostruct-align/1d9bA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d9bA/nostruct-align/1d9bA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28858/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.831177 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d9cA id: 1d9cA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d9cA/nostruct-align/1d9cA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d9cA/nostruct-align/1d9cA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d9cA/nostruct-align/1d9cA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20386/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.333130 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1d9eA id: 1d9eA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d9eA/nostruct-align/1d9eA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d9eA/nostruct-align/1d9eA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1d9eA/nostruct-align/1d9eA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15899/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.151123 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1daaA id: 1daaA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1daaA/nostruct-align/1daaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1daaA/nostruct-align/1daaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1daaA/nostruct-align/1daaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6315/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.622131 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dabA id: 1dabA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dabA/nostruct-align/1dabA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dabA/nostruct-align/1dabA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dabA/nostruct-align/1dabA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1167/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.451111 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dad id: 1dad alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dad/nostruct-align/1dad.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dad/nostruct-align/1dad.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dad/nostruct-align/1dad.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25133/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.662170 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1danH id: 1danH alignment found: /projects/compbio/experiments/models.97/pdb/1d/1danH/nostruct-align/1danH.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1danH/nostruct-align/1danH.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1danH/nostruct-align/1danH.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4203/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.384155 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1danT id: 1danT alignment found: /projects/compbio/experiments/models.97/pdb/1d/1danT/nostruct-align/1danT.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1danT/nostruct-align/1danT.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1danT/nostruct-align/1danT.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14919/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.783142 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1danU id: 1danU alignment found: /projects/compbio/experiments/models.97/pdb/1d/1danU/nostruct-align/1danU.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1danU/nostruct-align/1danU.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1danU/nostruct-align/1danU.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32605/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.310120 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dapA id: 1dapA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dapA/nostruct-align/1dapA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dapA/nostruct-align/1dapA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dapA/nostruct-align/1dapA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28500/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.482178 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dar id: 1dar alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dar/nostruct-align/1dar.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dar/nostruct-align/1dar.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dar/nostruct-align/1dar.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5072/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.055115 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dat id: 1dat alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dat/nostruct-align/1dat.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dat/nostruct-align/1dat.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dat/nostruct-align/1dat.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19869/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.257141 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1db1A id: 1db1A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1db1A/nostruct-align/1db1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1db1A/nostruct-align/1db1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1db1A/nostruct-align/1db1A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13011/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.959167 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1db3A id: 1db3A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1db3A/nostruct-align/1db3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1db3A/nostruct-align/1db3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1db3A/nostruct-align/1db3A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28295/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.791138 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dbgA id: 1dbgA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dbgA/nostruct-align/1dbgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dbgA/nostruct-align/1dbgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dbgA/nostruct-align/1dbgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7413/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -14.260193 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dbh id: 1dbh alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dbh/nostruct-align/1dbh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dbh/nostruct-align/1dbh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dbh/nostruct-align/1dbh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31790/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.570190 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dbiA id: 1dbiA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dbiA/nostruct-align/1dbiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dbiA/nostruct-align/1dbiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dbiA/nostruct-align/1dbiA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30031/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.854187 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dbs id: 1dbs alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dbs/nostruct-align/1dbs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dbs/nostruct-align/1dbs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dbs/nostruct-align/1dbs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31665/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.662170 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dbtA id: 1dbtA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dbtA/nostruct-align/1dbtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dbtA/nostruct-align/1dbtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dbtA/nostruct-align/1dbtA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30184/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.621155 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dbwA id: 1dbwA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dbwA/nostruct-align/1dbwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dbwA/nostruct-align/1dbwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dbwA/nostruct-align/1dbwA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20682/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.544189 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dceA id: 1dceA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dceA/nostruct-align/1dceA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dceA/nostruct-align/1dceA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dceA/nostruct-align/1dceA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2481/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.332153 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dceB id: 1dceB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dceB/nostruct-align/1dceB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dceB/nostruct-align/1dceB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dceB/nostruct-align/1dceB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16766/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.019104 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dcfA id: 1dcfA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dcfA/nostruct-align/1dcfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dcfA/nostruct-align/1dcfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dcfA/nostruct-align/1dcfA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17028/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.761108 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dchA id: 1dchA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dchA/nostruct-align/1dchA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dchA/nostruct-align/1dchA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dchA/nostruct-align/1dchA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21341/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.940186 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dciA id: 1dciA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dciA/nostruct-align/1dciA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dciA/nostruct-align/1dciA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dciA/nostruct-align/1dciA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4516/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.448181 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dcpA id: 1dcpA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dcpA/nostruct-align/1dcpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dcpA/nostruct-align/1dcpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dcpA/nostruct-align/1dcpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11691/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.888123 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dcqA id: 1dcqA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dcqA/nostruct-align/1dcqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dcqA/nostruct-align/1dcqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dcqA/nostruct-align/1dcqA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23920/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.360168 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dcs id: 1dcs alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dcs/nostruct-align/1dcs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dcs/nostruct-align/1dcs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dcs/nostruct-align/1dcs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6378/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.801147 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dctA id: 1dctA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dctA/nostruct-align/1dctA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dctA/nostruct-align/1dctA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dctA/nostruct-align/1dctA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31146/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.638123 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dd5A id: 1dd5A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dd5A/nostruct-align/1dd5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dd5A/nostruct-align/1dd5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dd5A/nostruct-align/1dd5A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5408/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.269165 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dd8A id: 1dd8A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dd8A/nostruct-align/1dd8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dd8A/nostruct-align/1dd8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dd8A/nostruct-align/1dd8A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13130/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.650146 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dd9A id: 1dd9A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dd9A/nostruct-align/1dd9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dd9A/nostruct-align/1dd9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dd9A/nostruct-align/1dd9A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23202/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.410156 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ddbA id: 1ddbA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1ddbA/nostruct-align/1ddbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1ddbA/nostruct-align/1ddbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1ddbA/nostruct-align/1ddbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26031/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.251160 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ddcA id: 1ddcA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1ddcA/nostruct-align/1ddcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1ddcA/nostruct-align/1ddcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1ddcA/nostruct-align/1ddcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18439/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.619141 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ddf id: 1ddf alignment found: /projects/compbio/experiments/models.97/pdb/1d/1ddf/nostruct-align/1ddf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1ddf/nostruct-align/1ddf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1ddf/nostruct-align/1ddf.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9773/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.099182 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ddt id: 1ddt alignment found: /projects/compbio/experiments/models.97/pdb/1d/1ddt/nostruct-align/1ddt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1ddt/nostruct-align/1ddt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1ddt/nostruct-align/1ddt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32407/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.416138 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ddt_1 id: 1ddt_1 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1ddt_1/nostruct-align/1ddt_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1ddt_1/nostruct-align/1ddt_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1ddt_1/nostruct-align/1ddt_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21675/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.798157 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ddt_2 id: 1ddt_2 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1ddt_2/nostruct-align/1ddt_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1ddt_2/nostruct-align/1ddt_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1ddt_2/nostruct-align/1ddt_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21210/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.720154 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ddt_3 id: 1ddt_3 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1ddt_3/nostruct-align/1ddt_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1ddt_3/nostruct-align/1ddt_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1ddt_3/nostruct-align/1ddt_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3461/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.943115 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ddzA id: 1ddzA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1ddzA/nostruct-align/1ddzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1ddzA/nostruct-align/1ddzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1ddzA/nostruct-align/1ddzA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32627/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.453125 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1deaA id: 1deaA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1deaA/nostruct-align/1deaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1deaA/nostruct-align/1deaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1deaA/nostruct-align/1deaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5850/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.684143 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dec id: 1dec alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dec/nostruct-align/1dec.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dec/nostruct-align/1dec.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dec/nostruct-align/1dec.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14285/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.005127 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1def id: 1def alignment found: /projects/compbio/experiments/models.97/pdb/1d/1def/nostruct-align/1def.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1def/nostruct-align/1def.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1def/nostruct-align/1def.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6606/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.867126 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dekA id: 1dekA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dekA/nostruct-align/1dekA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dekA/nostruct-align/1dekA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dekA/nostruct-align/1dekA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30158/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.401123 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1delA id: 1delA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1delA/nostruct-align/1delA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1delA/nostruct-align/1delA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1delA/nostruct-align/1delA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-291/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.587158 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1deoA id: 1deoA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1deoA/nostruct-align/1deoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1deoA/nostruct-align/1deoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1deoA/nostruct-align/1deoA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7371/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.745178 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1derA id: 1derA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1derA/nostruct-align/1derA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1derA/nostruct-align/1derA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1derA/nostruct-align/1derA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14477/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.336182 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1devB id: 1devB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1devB/nostruct-align/1devB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1devB/nostruct-align/1devB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1devB/nostruct-align/1devB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17995/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.634155 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1devC id: 1devC alignment found: /projects/compbio/experiments/models.97/pdb/1d/1devC/nostruct-align/1devC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1devC/nostruct-align/1devC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1devC/nostruct-align/1devC.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13833/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.980164 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1df4A id: 1df4A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1df4A/nostruct-align/1df4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1df4A/nostruct-align/1df4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1df4A/nostruct-align/1df4A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14840/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.380127 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1df7A id: 1df7A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1df7A/nostruct-align/1df7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1df7A/nostruct-align/1df7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1df7A/nostruct-align/1df7A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13614/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.376160 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dfd id: 1dfd alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dfd/nostruct-align/1dfd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dfd/nostruct-align/1dfd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dfd/nostruct-align/1dfd.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-29352/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.368164 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dfeA id: 1dfeA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dfeA/nostruct-align/1dfeA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dfeA/nostruct-align/1dfeA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dfeA/nostruct-align/1dfeA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23569/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.758118 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dfmA id: 1dfmA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dfmA/nostruct-align/1dfmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dfmA/nostruct-align/1dfmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dfmA/nostruct-align/1dfmA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24697/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.257141 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dfnA id: 1dfnA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dfnA/nostruct-align/1dfnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dfnA/nostruct-align/1dfnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dfnA/nostruct-align/1dfnA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28265/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.523132 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dfsA id: 1dfsA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dfsA/nostruct-align/1dfsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dfsA/nostruct-align/1dfsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dfsA/nostruct-align/1dfsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7227/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.393127 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dfuP id: 1dfuP alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dfuP/nostruct-align/1dfuP.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dfuP/nostruct-align/1dfuP.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dfuP/nostruct-align/1dfuP.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8077/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.215149 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dfx id: 1dfx alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dfx/nostruct-align/1dfx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dfx/nostruct-align/1dfx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dfx/nostruct-align/1dfx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32331/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.516113 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dg3A id: 1dg3A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dg3A/nostruct-align/1dg3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dg3A/nostruct-align/1dg3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dg3A/nostruct-align/1dg3A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4796/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.125122 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dg6A id: 1dg6A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dg6A/nostruct-align/1dg6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dg6A/nostruct-align/1dg6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dg6A/nostruct-align/1dg6A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8216/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.241150 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dg9A id: 1dg9A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dg9A/nostruct-align/1dg9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dg9A/nostruct-align/1dg9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dg9A/nostruct-align/1dg9A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28826/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.012146 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dgfA id: 1dgfA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgfA/nostruct-align/1dgfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgfA/nostruct-align/1dgfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dgfA/nostruct-align/1dgfA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12373/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.426147 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dgkN id: 1dgkN alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgkN/nostruct-align/1dgkN.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgkN/nostruct-align/1dgkN.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dgkN/nostruct-align/1dgkN.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27029/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.314148 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dgrC id: 1dgrC alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgrC/nostruct-align/1dgrC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgrC/nostruct-align/1dgrC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dgrC/nostruct-align/1dgrC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3589/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.582153 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dgrM id: 1dgrM alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgrM/nostruct-align/1dgrM.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgrM/nostruct-align/1dgrM.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dgrM/nostruct-align/1dgrM.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9098/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.391174 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dgrN id: 1dgrN alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgrN/nostruct-align/1dgrN.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgrN/nostruct-align/1dgrN.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dgrN/nostruct-align/1dgrN.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27184/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.083130 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dgrV id: 1dgrV alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgrV/nostruct-align/1dgrV.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgrV/nostruct-align/1dgrV.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dgrV/nostruct-align/1dgrV.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file ./tmp/tmp-build-weighted-model-purr-4993/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.081116 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dgrW id: 1dgrW alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgrW/nostruct-align/1dgrW.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgrW/nostruct-align/1dgrW.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dgrW/nostruct-align/1dgrW.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9224/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.337158 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dguA id: 1dguA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dguA/nostruct-align/1dguA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dguA/nostruct-align/1dguA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dguA/nostruct-align/1dguA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5774/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.705200 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dgwA id: 1dgwA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgwA/nostruct-align/1dgwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgwA/nostruct-align/1dgwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dgwA/nostruct-align/1dgwA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-927/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.651123 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dgwX id: 1dgwX alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgwX/nostruct-align/1dgwX.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgwX/nostruct-align/1dgwX.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dgwX/nostruct-align/1dgwX.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9218/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.083130 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dgwY id: 1dgwY alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgwY/nostruct-align/1dgwY.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgwY/nostruct-align/1dgwY.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dgwY/nostruct-align/1dgwY.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30131/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.391174 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dgyA id: 1dgyA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgyA/nostruct-align/1dgyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgyA/nostruct-align/1dgyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dgyA/nostruct-align/1dgyA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6285/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.454163 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dhkB id: 1dhkB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dhkB/nostruct-align/1dhkB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dhkB/nostruct-align/1dhkB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dhkB/nostruct-align/1dhkB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20340/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.000122 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dhn id: 1dhn alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dhn/nostruct-align/1dhn.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dhn/nostruct-align/1dhn.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dhn/nostruct-align/1dhn.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25875/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.525146 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dhpA id: 1dhpA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dhpA/nostruct-align/1dhpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dhpA/nostruct-align/1dhpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dhpA/nostruct-align/1dhpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29187/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.237183 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dhr id: 1dhr alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dhr/nostruct-align/1dhr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dhr/nostruct-align/1dhr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dhr/nostruct-align/1dhr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3644/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.409180 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dhs id: 1dhs alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dhs/nostruct-align/1dhs.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dhs/nostruct-align/1dhs.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dhs/nostruct-align/1dhs.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23012/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.367126 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dhx id: 1dhx alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dhx/nostruct-align/1dhx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dhx/nostruct-align/1dhx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dhx/nostruct-align/1dhx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2758/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.574158 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dhy id: 1dhy alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dhy/nostruct-align/1dhy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dhy/nostruct-align/1dhy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dhy/nostruct-align/1dhy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23882/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.463135 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1di0A id: 1di0A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1di0A/nostruct-align/1di0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1di0A/nostruct-align/1di0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1di0A/nostruct-align/1di0A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22360/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.061157 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1di2A id: 1di2A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1di2A/nostruct-align/1di2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1di2A/nostruct-align/1di2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1di2A/nostruct-align/1di2A.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5821/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.017151 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1di6A id: 1di6A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1di6A/nostruct-align/1di6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1di6A/nostruct-align/1di6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1di6A/nostruct-align/1di6A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12756/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.276184 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1difA id: 1difA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1difA/nostruct-align/1difA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1difA/nostruct-align/1difA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1difA/nostruct-align/1difA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10541/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.854187 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dih id: 1dih alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dih/nostruct-align/1dih.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dih/nostruct-align/1dih.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dih/nostruct-align/1dih.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13194/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.581177 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dih_1 id: 1dih_1 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dih_1/nostruct-align/1dih_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dih_1/nostruct-align/1dih_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dih_1/nostruct-align/1dih_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31553/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.290100 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dih_2 id: 1dih_2 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dih_2/nostruct-align/1dih_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dih_2/nostruct-align/1dih_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dih_2/nostruct-align/1dih_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13952/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.769165 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1diiC id: 1diiC alignment found: /projects/compbio/experiments/models.97/pdb/1d/1diiC/nostruct-align/1diiC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1diiC/nostruct-align/1diiC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1diiC/nostruct-align/1diiC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5104/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.106140 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dik id: 1dik alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dik/nostruct-align/1dik.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dik/nostruct-align/1dik.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dik/nostruct-align/1dik.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11021/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.538147 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dik_1 id: 1dik_1 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dik_1/nostruct-align/1dik_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dik_1/nostruct-align/1dik_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dik_1/nostruct-align/1dik_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13868/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.673096 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dik_2 id: 1dik_2 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dik_2/nostruct-align/1dik_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dik_2/nostruct-align/1dik_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dik_2/nostruct-align/1dik_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28373/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.463135 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dik_3 id: 1dik_3 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dik_3/nostruct-align/1dik_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dik_3/nostruct-align/1dik_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dik_3/nostruct-align/1dik_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28627/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.246094 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1din id: 1din alignment found: /projects/compbio/experiments/models.97/pdb/1d/1din/nostruct-align/1din.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1din/nostruct-align/1din.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1din/nostruct-align/1din.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-151/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.239197 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dioA id: 1dioA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dioA/nostruct-align/1dioA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dioA/nostruct-align/1dioA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dioA/nostruct-align/1dioA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8306/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.842102 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dioB id: 1dioB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dioB/nostruct-align/1dioB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dioB/nostruct-align/1dioB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dioB/nostruct-align/1dioB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3422/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.971130 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dioG id: 1dioG alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dioG/nostruct-align/1dioG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dioG/nostruct-align/1dioG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dioG/nostruct-align/1dioG.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3545/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.886169 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dipA id: 1dipA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dipA/nostruct-align/1dipA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dipA/nostruct-align/1dipA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dipA/nostruct-align/1dipA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23100/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.816162 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dipB id: 1dipB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dipB/nostruct-align/1dipB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dipB/nostruct-align/1dipB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dipB/nostruct-align/1dipB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27942/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.816162 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1div id: 1div alignment found: /projects/compbio/experiments/models.97/pdb/1d/1div/nostruct-align/1div.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1div/nostruct-align/1div.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1div/nostruct-align/1div.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23503/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.701172 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dj0A id: 1dj0A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dj0A/nostruct-align/1dj0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dj0A/nostruct-align/1dj0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dj0A/nostruct-align/1dj0A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23939/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.537170 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dj7A id: 1dj7A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dj7A/nostruct-align/1dj7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dj7A/nostruct-align/1dj7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dj7A/nostruct-align/1dj7A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26150/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.771118 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dj7B id: 1dj7B alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dj7B/nostruct-align/1dj7B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dj7B/nostruct-align/1dj7B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dj7B/nostruct-align/1dj7B.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16854/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.976135 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1djxB id: 1djxB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1djxB/nostruct-align/1djxB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1djxB/nostruct-align/1djxB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1djxB/nostruct-align/1djxB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8596/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.601135 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dkgA id: 1dkgA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dkgA/nostruct-align/1dkgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dkgA/nostruct-align/1dkgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dkgA/nostruct-align/1dkgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17755/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.481140 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dkgB id: 1dkgB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dkgB/nostruct-align/1dkgB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dkgB/nostruct-align/1dkgB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dkgB/nostruct-align/1dkgB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24867/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.451111 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dkgD id: 1dkgD alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dkgD/nostruct-align/1dkgD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dkgD/nostruct-align/1dkgD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dkgD/nostruct-align/1dkgD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8383/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.019104 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dkiA id: 1dkiA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dkiA/nostruct-align/1dkiA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dkiA/nostruct-align/1dkiA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dkiA/nostruct-align/1dkiA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7599/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.550171 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dkrA id: 1dkrA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dkrA/nostruct-align/1dkrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dkrA/nostruct-align/1dkrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dkrA/nostruct-align/1dkrA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5396/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.014099 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dktB id: 1dktB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dktB/nostruct-align/1dktB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dktB/nostruct-align/1dktB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dktB/nostruct-align/1dktB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2897/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.449158 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dkuA id: 1dkuA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dkuA/nostruct-align/1dkuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dkuA/nostruct-align/1dkuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dkuA/nostruct-align/1dkuA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16256/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.195129 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dkvA id: 1dkvA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dkvA/nostruct-align/1dkvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dkvA/nostruct-align/1dkvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dkvA/nostruct-align/1dkvA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22626/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.229187 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dkzA id: 1dkzA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dkzA/nostruct-align/1dkzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dkzA/nostruct-align/1dkzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dkzA/nostruct-align/1dkzA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21094/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.103149 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dl2A id: 1dl2A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dl2A/nostruct-align/1dl2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dl2A/nostruct-align/1dl2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dl2A/nostruct-align/1dl2A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20693/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.379150 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dlc id: 1dlc alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dlc/nostruct-align/1dlc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dlc/nostruct-align/1dlc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dlc/nostruct-align/1dlc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30152/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.441162 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dlc_1 id: 1dlc_1 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dlc_1/nostruct-align/1dlc_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dlc_1/nostruct-align/1dlc_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dlc_1/nostruct-align/1dlc_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16910/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.713135 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dlc_2 id: 1dlc_2 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dlc_2/nostruct-align/1dlc_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dlc_2/nostruct-align/1dlc_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dlc_2/nostruct-align/1dlc_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2587/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.196167 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dlc_3 id: 1dlc_3 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dlc_3/nostruct-align/1dlc_3.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dlc_3/nostruct-align/1dlc_3.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dlc_3/nostruct-align/1dlc_3.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30357/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.015137 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dlfH id: 1dlfH alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dlfH/nostruct-align/1dlfH.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dlfH/nostruct-align/1dlfH.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dlfH/nostruct-align/1dlfH.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3528/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.594177 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dlfL id: 1dlfL alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dlfL/nostruct-align/1dlfL.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dlfL/nostruct-align/1dlfL.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dlfL/nostruct-align/1dlfL.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21064/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.820129 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dlhA_1 id: 1dlhA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dlhA_1/nostruct-align/1dlhA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dlhA_1/nostruct-align/1dlhA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dlhA_1/nostruct-align/1dlhA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19071/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.737183 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dlhB id: 1dlhB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dlhB/nostruct-align/1dlhB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dlhB/nostruct-align/1dlhB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dlhB/nostruct-align/1dlhB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32313/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.389160 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dliA id: 1dliA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dliA/nostruct-align/1dliA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dliA/nostruct-align/1dliA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dliA/nostruct-align/1dliA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32762/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.765137 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dlxA id: 1dlxA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dlxA/nostruct-align/1dlxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dlxA/nostruct-align/1dlxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dlxA/nostruct-align/1dlxA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20531/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.930176 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dm0A id: 1dm0A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dm0A/nostruct-align/1dm0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dm0A/nostruct-align/1dm0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dm0A/nostruct-align/1dm0A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26397/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.973145 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dm9A id: 1dm9A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dm9A/nostruct-align/1dm9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dm9A/nostruct-align/1dm9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dm9A/nostruct-align/1dm9A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26716/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.697144 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dmaA id: 1dmaA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dmaA/nostruct-align/1dmaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dmaA/nostruct-align/1dmaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dmaA/nostruct-align/1dmaA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13945/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.014160 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dmc id: 1dmc alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dmc/nostruct-align/1dmc.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dmc/nostruct-align/1dmc.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dmc/nostruct-align/1dmc.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32496/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.369141 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dme id: 1dme alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dme/nostruct-align/1dme.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dme/nostruct-align/1dme.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dme/nostruct-align/1dme.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17079/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.342163 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dmhA id: 1dmhA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dmhA/nostruct-align/1dmhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dmhA/nostruct-align/1dmhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dmhA/nostruct-align/1dmhA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18295/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.704163 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dmlA id: 1dmlA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dmlA/nostruct-align/1dmlA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dmlA/nostruct-align/1dmlA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dmlA/nostruct-align/1dmlA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12130/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.550171 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dmlB id: 1dmlB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dmlB/nostruct-align/1dmlB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dmlB/nostruct-align/1dmlB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dmlB/nostruct-align/1dmlB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8270/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.691162 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dmr id: 1dmr alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dmr/nostruct-align/1dmr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dmr/nostruct-align/1dmr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dmr/nostruct-align/1dmr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6225/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.066162 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dmuA id: 1dmuA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dmuA/nostruct-align/1dmuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dmuA/nostruct-align/1dmuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dmuA/nostruct-align/1dmuA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29066/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.458130 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dmwA id: 1dmwA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dmwA/nostruct-align/1dmwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dmwA/nostruct-align/1dmwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dmwA/nostruct-align/1dmwA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18939/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.034119 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dn1A id: 1dn1A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dn1A/nostruct-align/1dn1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dn1A/nostruct-align/1dn1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dn1A/nostruct-align/1dn1A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19438/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.277161 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dn1B id: 1dn1B alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dn1B/nostruct-align/1dn1B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dn1B/nostruct-align/1dn1B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dn1B/nostruct-align/1dn1B.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29566/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.607117 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dnv id: 1dnv alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dnv/nostruct-align/1dnv.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dnv/nostruct-align/1dnv.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dnv/nostruct-align/1dnv.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20658/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.896179 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dnyA id: 1dnyA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dnyA/nostruct-align/1dnyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dnyA/nostruct-align/1dnyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dnyA/nostruct-align/1dnyA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22835/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.772156 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1do0A id: 1do0A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1do0A/nostruct-align/1do0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1do0A/nostruct-align/1do0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1do0A/nostruct-align/1do0A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17502/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.185181 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1do6A id: 1do6A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1do6A/nostruct-align/1do6A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1do6A/nostruct-align/1do6A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1do6A/nostruct-align/1do6A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15626/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.521179 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1doi id: 1doi alignment found: /projects/compbio/experiments/models.97/pdb/1d/1doi/nostruct-align/1doi.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1doi/nostruct-align/1doi.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1doi/nostruct-align/1doi.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2816/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.760132 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dokA id: 1dokA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dokA/nostruct-align/1dokA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dokA/nostruct-align/1dokA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dokA/nostruct-align/1dokA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27750/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.763123 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dosA id: 1dosA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dosA/nostruct-align/1dosA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dosA/nostruct-align/1dosA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dosA/nostruct-align/1dosA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9823/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.948120 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dozA id: 1dozA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dozA/nostruct-align/1dozA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dozA/nostruct-align/1dozA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dozA/nostruct-align/1dozA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30594/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.942139 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dp5B id: 1dp5B alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dp5B/nostruct-align/1dp5B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dp5B/nostruct-align/1dp5B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dp5B/nostruct-align/1dp5B.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6741/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.517151 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dp7P id: 1dp7P alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dp7P/nostruct-align/1dp7P.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dp7P/nostruct-align/1dp7P.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dp7P/nostruct-align/1dp7P.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3168/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.797119 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dpe id: 1dpe alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dpe/nostruct-align/1dpe.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dpe/nostruct-align/1dpe.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dpe/nostruct-align/1dpe.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6849/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.280151 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dpgA id: 1dpgA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dpgA/nostruct-align/1dpgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dpgA/nostruct-align/1dpgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dpgA/nostruct-align/1dpgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4398/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.269165 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dpgA_1 id: 1dpgA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dpgA_1/nostruct-align/1dpgA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dpgA_1/nostruct-align/1dpgA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dpgA_1/nostruct-align/1dpgA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6848/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.936157 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dpgA_2 id: 1dpgA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dpgA_2/nostruct-align/1dpgA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dpgA_2/nostruct-align/1dpgA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dpgA_2/nostruct-align/1dpgA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13146/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.526184 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dpo id: 1dpo alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dpo/nostruct-align/1dpo.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dpo/nostruct-align/1dpo.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dpo/nostruct-align/1dpo.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1716/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.809143 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dppA id: 1dppA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dppA/nostruct-align/1dppA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dppA/nostruct-align/1dppA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dppA/nostruct-align/1dppA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18299/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.167114 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dprA_1 id: 1dprA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dprA_1/nostruct-align/1dprA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dprA_1/nostruct-align/1dprA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dprA_1/nostruct-align/1dprA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14428/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.532104 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dpr_1a1 id: 1dpr_1a1 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dpr_1a1/nostruct-align/1dpr_1a1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dpr_1a1/nostruct-align/1dpr_1a1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dpr_1a1/nostruct-align/1dpr_1a1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29712/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.325134 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dpsA id: 1dpsA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dpsA/nostruct-align/1dpsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dpsA/nostruct-align/1dpsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dpsA/nostruct-align/1dpsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25291/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.026184 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dpsD id: 1dpsD alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dpsD/nostruct-align/1dpsD.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dpsD/nostruct-align/1dpsD.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dpsD/nostruct-align/1dpsD.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4161/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.786133 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dptA id: 1dptA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dptA/nostruct-align/1dptA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dptA/nostruct-align/1dptA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dptA/nostruct-align/1dptA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12175/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.521179 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dqaA id: 1dqaA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dqaA/nostruct-align/1dqaA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dqaA/nostruct-align/1dqaA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dqaA/nostruct-align/1dqaA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27997/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.515137 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dqbA id: 1dqbA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dqbA/nostruct-align/1dqbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dqbA/nostruct-align/1dqbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dqbA/nostruct-align/1dqbA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29283/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.459167 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dqgA id: 1dqgA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dqgA/nostruct-align/1dqgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dqgA/nostruct-align/1dqgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dqgA/nostruct-align/1dqgA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3641/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.393188 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dqrA id: 1dqrA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dqrA/nostruct-align/1dqrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dqrA/nostruct-align/1dqrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dqrA/nostruct-align/1dqrA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29334/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.246155 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dqsA id: 1dqsA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dqsA/nostruct-align/1dqsA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dqsA/nostruct-align/1dqsA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dqsA/nostruct-align/1dqsA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10767/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.273132 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dquA id: 1dquA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dquA/nostruct-align/1dquA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dquA/nostruct-align/1dquA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dquA/nostruct-align/1dquA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5178/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.199097 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dqwA id: 1dqwA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dqwA/nostruct-align/1dqwA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dqwA/nostruct-align/1dqwA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dqwA/nostruct-align/1dqwA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12367/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.607117 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dr8B id: 1dr8B alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dr8B/nostruct-align/1dr8B.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dr8B/nostruct-align/1dr8B.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dr8B/nostruct-align/1dr8B.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5863/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.281128 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1draA id: 1draA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1draA/nostruct-align/1draA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1draA/nostruct-align/1draA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1draA/nostruct-align/1draA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20136/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.040161 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1drmA id: 1drmA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1drmA/nostruct-align/1drmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1drmA/nostruct-align/1drmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1drmA/nostruct-align/1drmA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7374/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.322144 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1drqA id: 1drqA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1drqA/nostruct-align/1drqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1drqA/nostruct-align/1drqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1drqA/nostruct-align/1drqA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13314/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.069153 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1drw id: 1drw alignment found: /projects/compbio/experiments/models.97/pdb/1d/1drw/nostruct-align/1drw.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1drw/nostruct-align/1drw.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1drw/nostruct-align/1drw.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8323/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.452148 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dsbA id: 1dsbA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dsbA/nostruct-align/1dsbA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dsbA/nostruct-align/1dsbA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dsbA/nostruct-align/1dsbA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26379/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.060181 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dsbA_1 id: 1dsbA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dsbA_1/nostruct-align/1dsbA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dsbA_1/nostruct-align/1dsbA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dsbA_1/nostruct-align/1dsbA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32085/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.119202 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dsbA_2 id: 1dsbA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dsbA_2/nostruct-align/1dsbA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dsbA_2/nostruct-align/1dsbA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1d/1dsbA_2/nostruct-align/1dsbA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2611/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.960144 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dssG id: 1dssG alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dssG/nostruct-align/1dssG.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dssG/nostruct-align/1dssG.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dssG/nostruct-align/1dssG.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20153/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.486145 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dsvA id: 1dsvA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dsvA/nostruct-align/1dsvA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dsvA/nostruct-align/1dsvA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dsvA/nostruct-align/1dsvA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5027/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.460144 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dt4A id: 1dt4A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dt4A/nostruct-align/1dt4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dt4A/nostruct-align/1dt4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dt4A/nostruct-align/1dt4A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14922/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.864136 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dt8A id: 1dt8A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dt8A/nostruct-align/1dt8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dt8A/nostruct-align/1dt8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dt8A/nostruct-align/1dt8A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2994/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.188171 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dt9A id: 1dt9A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dt9A/nostruct-align/1dt9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dt9A/nostruct-align/1dt9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dt9A/nostruct-align/1dt9A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32361/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.200134 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dtgA id: 1dtgA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dtgA/nostruct-align/1dtgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dtgA/nostruct-align/1dtgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dtgA/nostruct-align/1dtgA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-833/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.213135 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dtoA id: 1dtoA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dtoA/nostruct-align/1dtoA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dtoA/nostruct-align/1dtoA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dtoA/nostruct-align/1dtoA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13562/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.112183 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dts id: 1dts alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dts/nostruct-align/1dts.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dts/nostruct-align/1dts.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dts/nostruct-align/1dts.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21739/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.451172 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dttA id: 1dttA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dttA/nostruct-align/1dttA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dttA/nostruct-align/1dttA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dttA/nostruct-align/1dttA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25638/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.371155 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dtx id: 1dtx alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dtx/nostruct-align/1dtx.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dtx/nostruct-align/1dtx.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dtx/nostruct-align/1dtx.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21184/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.619141 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dtyA id: 1dtyA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dtyA/nostruct-align/1dtyA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dtyA/nostruct-align/1dtyA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dtyA/nostruct-align/1dtyA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.642151 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1du2A id: 1du2A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1du2A/nostruct-align/1du2A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1du2A/nostruct-align/1du2A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1du2A/nostruct-align/1du2A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3416/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.271118 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dugA id: 1dugA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dugA/nostruct-align/1dugA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dugA/nostruct-align/1dugA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dugA/nostruct-align/1dugA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10386/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.039185 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dujA id: 1dujA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dujA/nostruct-align/1dujA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dujA/nostruct-align/1dujA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dujA/nostruct-align/1dujA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3911/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.984131 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dulA id: 1dulA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dulA/nostruct-align/1dulA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dulA/nostruct-align/1dulA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dulA/nostruct-align/1dulA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18697/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.779114 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dun id: 1dun alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dun/nostruct-align/1dun.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dun/nostruct-align/1dun.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dun/nostruct-align/1dun.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32370/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.279114 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dupA id: 1dupA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dupA/nostruct-align/1dupA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dupA/nostruct-align/1dupA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dupA/nostruct-align/1dupA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31315/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.972168 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1duzA id: 1duzA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1duzA/nostruct-align/1duzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1duzA/nostruct-align/1duzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1duzA/nostruct-align/1duzA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6018/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.346130 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1duzB id: 1duzB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1duzB/nostruct-align/1duzB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1duzB/nostruct-align/1duzB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1duzB/nostruct-align/1duzB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16310/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.899109 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dv0A id: 1dv0A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dv0A/nostruct-align/1dv0A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dv0A/nostruct-align/1dv0A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dv0A/nostruct-align/1dv0A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1564/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.539185 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dvh id: 1dvh alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dvh/nostruct-align/1dvh.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dvh/nostruct-align/1dvh.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dvh/nostruct-align/1dvh.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17182/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.525146 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dvjA id: 1dvjA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dvjA/nostruct-align/1dvjA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dvjA/nostruct-align/1dvjA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dvjA/nostruct-align/1dvjA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30534/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.821167 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dvkA id: 1dvkA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dvkA/nostruct-align/1dvkA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dvkA/nostruct-align/1dvkA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dvkA/nostruct-align/1dvkA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19900/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.903137 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dvpA id: 1dvpA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dvpA/nostruct-align/1dvpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dvpA/nostruct-align/1dvpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dvpA/nostruct-align/1dvpA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6970/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.888123 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dw9A id: 1dw9A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dw9A/nostruct-align/1dw9A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dw9A/nostruct-align/1dw9A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dw9A/nostruct-align/1dw9A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18535/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.724121 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dwnA id: 1dwnA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dwnA/nostruct-align/1dwnA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dwnA/nostruct-align/1dwnA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dwnA/nostruct-align/1dwnA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3571/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.638123 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dwtA id: 1dwtA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dwtA/nostruct-align/1dwtA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dwtA/nostruct-align/1dwtA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dwtA/nostruct-align/1dwtA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9383/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.489136 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dx5I id: 1dx5I alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dx5I/nostruct-align/1dx5I.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dx5I/nostruct-align/1dx5I.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dx5I/nostruct-align/1dx5I.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3638/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.363159 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dx7A id: 1dx7A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dx7A/nostruct-align/1dx7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dx7A/nostruct-align/1dx7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dx7A/nostruct-align/1dx7A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6023/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.142151 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dxgA id: 1dxgA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dxgA/nostruct-align/1dxgA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dxgA/nostruct-align/1dxgA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dxgA/nostruct-align/1dxgA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20488/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.864136 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dxtB id: 1dxtB alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dxtB/nostruct-align/1dxtB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dxtB/nostruct-align/1dxtB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dxtB/nostruct-align/1dxtB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4649/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.355103 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dxy id: 1dxy alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dxy/nostruct-align/1dxy.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dxy/nostruct-align/1dxy.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dxy/nostruct-align/1dxy.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13636/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.629150 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dxzA id: 1dxzA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dxzA/nostruct-align/1dxzA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dxzA/nostruct-align/1dxzA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dxzA/nostruct-align/1dxzA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3643/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.225159 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dy5A id: 1dy5A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dy5A/nostruct-align/1dy5A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dy5A/nostruct-align/1dy5A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dy5A/nostruct-align/1dy5A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3403/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.595093 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dynA id: 1dynA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dynA/nostruct-align/1dynA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dynA/nostruct-align/1dynA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dynA/nostruct-align/1dynA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8602/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.837158 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dyr id: 1dyr alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dyr/nostruct-align/1dyr.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dyr/nostruct-align/1dyr.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dyr/nostruct-align/1dyr.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32226/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.116150 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dz1A id: 1dz1A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dz1A/nostruct-align/1dz1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dz1A/nostruct-align/1dz1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dz1A/nostruct-align/1dz1A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22611/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.219177 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dz3A id: 1dz3A alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dz3A/nostruct-align/1dz3A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dz3A/nostruct-align/1dz3A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dz3A/nostruct-align/1dz3A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7227/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.515137 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dzlA id: 1dzlA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dzlA/nostruct-align/1dzlA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dzlA/nostruct-align/1dzlA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dzlA/nostruct-align/1dzlA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21221/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.106140 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1dzrA id: 1dzrA alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dzrA/nostruct-align/1dzrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dzrA/nostruct-align/1dzrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1d/1dzrA/nostruct-align/1dzrA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20420/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.514160 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1e0aB id: 1e0aB alignment found: /projects/compbio/experiments/models.97/pdb/1e/1e0aB/nostruct-align/1e0aB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1e0aB/nostruct-align/1e0aB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1e0aB/nostruct-align/1e0aB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1361/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.855164 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1e0bA id: 1e0bA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1e0bA/nostruct-align/1e0bA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1e0bA/nostruct-align/1e0bA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1e0bA/nostruct-align/1e0bA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19278/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.340149 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1e0cA id: 1e0cA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1e0cA/nostruct-align/1e0cA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1e0cA/nostruct-align/1e0cA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1e0cA/nostruct-align/1e0cA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25124/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.388123 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1e0lA id: 1e0lA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1e0lA/nostruct-align/1e0lA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1e0lA/nostruct-align/1e0lA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1e0lA/nostruct-align/1e0lA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18044/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.746155 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1e1bA id: 1e1bA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1e1bA/nostruct-align/1e1bA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1e1bA/nostruct-align/1e1bA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1e1bA/nostruct-align/1e1bA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15627/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.775146 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1e2aA id: 1e2aA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1e2aA/nostruct-align/1e2aA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1e2aA/nostruct-align/1e2aA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1e2aA/nostruct-align/1e2aA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29239/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.161133 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1e2o id: 1e2o alignment found: /projects/compbio/experiments/models.97/pdb/1e/1e2o/nostruct-align/1e2o.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1e2o/nostruct-align/1e2o.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1e2o/nostruct-align/1e2o.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14567/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.619141 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1eaf id: 1eaf alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eaf/nostruct-align/1eaf.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eaf/nostruct-align/1eaf.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eaf/nostruct-align/1eaf.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28150/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.867188 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1eagA id: 1eagA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eagA/nostruct-align/1eagA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eagA/nostruct-align/1eagA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eagA/nostruct-align/1eagA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17142/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.236145 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1eaiC id: 1eaiC alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eaiC/nostruct-align/1eaiC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eaiC/nostruct-align/1eaiC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eaiC/nostruct-align/1eaiC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27206/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.350159 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1eal id: 1eal alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eal/nostruct-align/1eal.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eal/nostruct-align/1eal.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eal/nostruct-align/1eal.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23015/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.606140 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1eayC id: 1eayC alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eayC/nostruct-align/1eayC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eayC/nostruct-align/1eayC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eayC/nostruct-align/1eayC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5412/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.488159 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ebdC id: 1ebdC alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ebdC/nostruct-align/1ebdC.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ebdC/nostruct-align/1ebdC.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ebdC/nostruct-align/1ebdC.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19367/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.926147 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ebhA_1 id: 1ebhA_1 alignment found: /projects/compbio4/experiments/models.97/domains/1e/1ebhA_1/nostruct-align/1ebhA_1.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1ebhA_1/nostruct-align/1ebhA_1.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1e/1ebhA_1/nostruct-align/1ebhA_1.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1506/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.085144 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ebhA_2 id: 1ebhA_2 alignment found: /projects/compbio4/experiments/models.97/domains/1e/1ebhA_2/nostruct-align/1ebhA_2.t99.a2m.gz Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1ebhA_2/nostruct-align/1ebhA_2.t99-w0.5.mod /projects/compbio4/experiments/models.97/domains/1e/1ebhA_2/nostruct-align/1ebhA_2.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23359/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.829163 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1eblA id: 1eblA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eblA/nostruct-align/1eblA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eblA/nostruct-align/1eblA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eblA/nostruct-align/1eblA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16462/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.788147 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ebmA id: 1ebmA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ebmA/nostruct-align/1ebmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ebmA/nostruct-align/1ebmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ebmA/nostruct-align/1ebmA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27874/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.320129 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ebpA id: 1ebpA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ebpA/nostruct-align/1ebpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ebpA/nostruct-align/1ebpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ebpA/nostruct-align/1ebpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12763/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.105103 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ebuA id: 1ebuA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ebuA/nostruct-align/1ebuA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ebuA/nostruct-align/1ebuA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ebuA/nostruct-align/1ebuA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8057/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.078125 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1eca id: 1eca alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eca/nostruct-align/1eca.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eca/nostruct-align/1eca.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eca/nostruct-align/1eca.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23933/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.604126 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ecd id: 1ecd alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ecd/nostruct-align/1ecd.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ecd/nostruct-align/1ecd.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ecd/nostruct-align/1ecd.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20542/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.632141 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1eceA id: 1eceA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eceA/nostruct-align/1eceA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eceA/nostruct-align/1eceA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eceA/nostruct-align/1eceA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9969/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.918152 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ecfA id: 1ecfA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ecfA/nostruct-align/1ecfA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ecfA/nostruct-align/1ecfA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ecfA/nostruct-align/1ecfA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31454/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.844116 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ecfB id: 1ecfB alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ecfB/nostruct-align/1ecfB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ecfB/nostruct-align/1ecfB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ecfB/nostruct-align/1ecfB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5047/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.016113 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1eciA id: 1eciA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eciA/nostruct-align/1eciA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eciA/nostruct-align/1eciA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eciA/nostruct-align/1eciA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4438/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.148193 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ecl id: 1ecl alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ecl/nostruct-align/1ecl.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ecl/nostruct-align/1ecl.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ecl/nostruct-align/1ecl.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15537/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.385132 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ecmA id: 1ecmA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ecmA/nostruct-align/1ecmA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ecmA/nostruct-align/1ecmA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ecmA/nostruct-align/1ecmA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24209/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.676147 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1eco id: 1eco alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eco/nostruct-align/1eco.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eco/nostruct-align/1eco.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eco/nostruct-align/1eco.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7670/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.638184 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ecpA id: 1ecpA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ecpA/nostruct-align/1ecpA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ecpA/nostruct-align/1ecpA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ecpA/nostruct-align/1ecpA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29599/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.477173 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ecrA id: 1ecrA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ecrA/nostruct-align/1ecrA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ecrA/nostruct-align/1ecrA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ecrA/nostruct-align/1ecrA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28452/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.210144 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ecxA id: 1ecxA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ecxA/nostruct-align/1ecxA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ecxA/nostruct-align/1ecxA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ecxA/nostruct-align/1ecxA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2676/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -13.288147 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ed7A id: 1ed7A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ed7A/nostruct-align/1ed7A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ed7A/nostruct-align/1ed7A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ed7A/nostruct-align/1ed7A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8322/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.102112 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ede id: 1ede alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ede/nostruct-align/1ede.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ede/nostruct-align/1ede.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ede/nostruct-align/1ede.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28414/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.652100 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1edg id: 1edg alignment found: /projects/compbio/experiments/models.97/pdb/1e/1edg/nostruct-align/1edg.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1edg/nostruct-align/1edg.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1edg/nostruct-align/1edg.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23454/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.631165 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1edhA id: 1edhA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1edhA/nostruct-align/1edhA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1edhA/nostruct-align/1edhA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1edhA/nostruct-align/1edhA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9346/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.127197 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1edmB id: 1edmB alignment found: /projects/compbio/experiments/models.97/pdb/1e/1edmB/nostruct-align/1edmB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1edmB/nostruct-align/1edmB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1edmB/nostruct-align/1edmB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25029/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -5.693176 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1edqA id: 1edqA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1edqA/nostruct-align/1edqA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1edqA/nostruct-align/1edqA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1edqA/nostruct-align/1edqA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26159/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.333191 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1edt id: 1edt alignment found: /projects/compbio/experiments/models.97/pdb/1e/1edt/nostruct-align/1edt.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1edt/nostruct-align/1edt.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1edt/nostruct-align/1edt.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12210/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.148193 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1eduA id: 1eduA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eduA/nostruct-align/1eduA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eduA/nostruct-align/1eduA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eduA/nostruct-align/1eduA.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7849/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -8.445129 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ee4A id: 1ee4A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ee4A/nostruct-align/1ee4A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ee4A/nostruct-align/1ee4A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ee4A/nostruct-align/1ee4A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25739/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.579102 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1eerA id: 1eerA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eerA/nostruct-align/1eerA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eerA/nostruct-align/1eerA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eerA/nostruct-align/1eerA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17281/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.007141 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1eerB id: 1eerB alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eerB/nostruct-align/1eerB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eerB/nostruct-align/1eerB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eerB/nostruct-align/1eerB.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19401/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -12.633118 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1eesB id: 1eesB alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eesB/nostruct-align/1eesB.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eesB/nostruct-align/1eesB.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1eesB/nostruct-align/1eesB.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29806/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -6.920166 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ef1A id: 1ef1A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ef1A/nostruct-align/1ef1A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ef1A/nostruct-align/1ef1A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ef1A/nostruct-align/1ef1A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10669/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -10.205139 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ef1C id: 1ef1C alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ef1C/nostruct-align/1ef1C.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ef1C/nostruct-align/1ef1C.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ef1C/nostruct-align/1ef1C.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11614/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -7.603149 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1ef8A id: 1ef8A alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ef8A/nostruct-align/1ef8A.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ef8A/nostruct-align/1ef8A.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1ef8A/nostruct-align/1ef8A.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2290/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -9.437134 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1efcA id: 1efcA alignment found: /projects/compbio/experiments/models.97/pdb/1e/1efcA/nostruct-align/1efcA.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1efcA/nostruct-align/1efcA.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1efcA/nostruct-align/1efcA.t99-w0.5.mod(21): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18868/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequences) . Average NLL-Simple NULL score: -11.126099 Database has 1 sequences with 206 residues. entering get_template_model_for_db_search: template_id: 1efdN id: 1efdN alignment found: /projects/compbio/experiments/models.97/pdb/1e/1efdN/nostruct-align/1efdN.t99.a2m.gz Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1efdN/nostruct-align/1efdN.t99-w0.5.mod /projects/compbio/experiments/models.97/pdb/1e/1efdN/nostruct-align/1efdN.t99-w0.5.mod(23): Reading MODEL -- Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16362/tmp.a2m SAM: /projects/compbio/bin/alpha/hmmscore v3.2 (June, 2000) compiled 07/06/00_15:43:01 Calculating Distances (. = 1000 sequenc