; SAM: prettyalign v3.2 (June, 2000) compiled 07/10/00_09:40:44 ; (c) 1992-1999 Regents of the University of California, Santa Cruz ; ; Sequence Alignment and Modeling Software System ; http://www.cse.ucsc.edu/research/compbio/sam.html ; ; ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- ; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: ; Extension and analysis of the basic method, CABIOS 12:95-107, 1996. ; K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting ; remote protein homologies, Bioinformatics 14(10):846-856, 1999. ; A. Krogh et al., Hidden Markov models in computational biology: ; Applications to protein modeling, JMB 235:1501-1531, Feb 1994. ; --------------------------------------------------------------------- ; Sequence numbers correspond to the following labels: ; 1 gi|7459698|pir||JC5467_573:760 ; 2 gi|1339852|dbj|BAA12744.1|_573:760 ; 3 gi|121837|sp|P06564|GUN_BACS1_571:758 ; 4 gi|80147|pir||JT0611_571:758 ; 5 gi|289266|gb|AAA73189.1|_570:757 ; 6 gi|121838|sp|P19424|GUN_BACS6_752:940 ; 7 gi|121795|sp|P19570|GUN3_BACS4_611:795 ; 8 gi|1345369|dbj|BAA12826.1|_562:751 ; 9 gi|1483210|emb|CAB01405.1|_358:572 ; 10 T0108 ; 11 gi|7475991|pir||JC5487_352:557 ; 12 gi|1345369|dbj|BAA12826.1|_359:556 ; 13 gi|121838|sp|P19424|GUN_BACS6_557:750 ; 14 gi|7459698|pir||JC5467_377:572 ; 15 gi|1339852|dbj|BAA12744.1|_377:572 ; 16 gi|121837|sp|P06564|GUN_BACS1_377:569 ; 17 gi|80147|pir||JT0611_377:569 ; 18 gi|289266|gb|AAA73189.1|_376:568 ; 19 gi|121795|sp|P19570|GUN3_BACS4_407:605 10 20 30 40 50 60 | | | | | | 1 -------------GKIVEIPVVHS---...---PKGDAALPSNFEYGTRQGWDWAGESGVKt.AL 2 -------------GKIVEIPVVHS---...---PKGDAALPSNFEYGTRQGWDWAGESGVKt.AL 3 -------------GTEVEIPVVHD---...---PKGEAVLPSVFEDGTRQGWDWAGESGVKt.AL 4 -------------GTEVEIPVVHD---...---PKGEAVLPSVFEDGTRQGWDWAGESGVKt.AL 5 -------------GTEVEIPVVHD---...---PKGEAVLPSVFEDGTRQGWDWAGESGVKt.AL 6 -------------GTEIEIEVIHD---...---EKGTATLPSTFEDGTRQGWDWHTESGVKt.AL 7 ----------------VPEPVEHD---...---TKGDSALPSDFEDGTRQGWEWDSESAVRt.AL 8 ---------------VVEAPVEHA---...---PIGKATLPSTFEDSTRQDWAWDATSGVQs.AL 9 LSISGEYVRARIKGIAY-QPIKRDNKIkegENAPLGEKVLPSTFEDDTRQGWDWDGPSGVKg.PI 10 MGASGQYVRARIKGAYYATPVDPVTNQ...PTAPKDFSSGFWDFNDGTTQGFGVNPDSPIT..AI 11 LTTSGQYVRARIKGAYYATPVDPVTNQ...PTAPKDFSSGFWDFNDGTTQGFGVNPDSPIT..AI 12 LSVSGEYARARIKGIKY-EPIERS---...--EKEEFTTNVWDFNDGTTQGFGINGDSPIKadSI 13 LSLSGEYVRARIKGIEY-TPIDRT---...-----KFTKLVWDFNDGTTQGFQVNGDSPNKe.SI 14 LSLSGEYVRARIKGAKY-EPIDRT---...-----RYTKVLWDFNDGTKQGFGVNSDSPNKe.AI 15 LSLSGEYVRARIKGAKY-EPIDRT---...-----RYTKVLWDFNDGTKQGFGVNSDSPNKe.AI 16 LSLSGEYVRARIKGVNY-EPIDRT---...-----KYTKVLWDFNDGTKQGFGVNGDSPVE..DV 17 LSLSGEYVRARIKGVNY-EPIDRT---...-----KYTKVLWDFNDGTKQGFGVNGDSPVE..DV 18 LSLSGEYVRARIKGVNY-EPIDRT---...-----KYTKVLWDFNDGTKQGFGVNGDSPVE..DV 19 LSVSGEYVRSRILGEEY-QPIDRT---...--PREEFSEVIWDFNDGTTQGFVQNSDSPL-..DV 70 80 90 100 110 120 | | | | | | 1 TIEEANGSQALSW--EFGYPEVKPSDNWASaprLDFHKDNLVRGENDYVAFDFYIDPA..RATEG 2 TIEEANGSQALSW--EFGYPEVKPSDNWASaprLDFHKDNLVRGENDYVAFDFYIDPA..RATEG 3 TIEEANGSNALSW--EFGYPEVKPSDNWATaprLDFWKSDLVRGENDYVTFDFYLDPV..RATEG 4 TIEEANGSNALSW--EFGYPEVKPSDNWATaprLDFWKSDLVRGENDYVTFDFYLDPV..RATEG 5 TIEEANGSNALSW--EFGYPEVKPSDNWATaprLDFWKSDLVRGENDYVTFDFYLDPV..RATEG 6 TIEEANGSNALSW--EYAYPEVKPSDGWATaprLDFWKDELVRGTSDYISFDFYIDAV..RASEG 7 TIEEANGSNALSW--EYAYPEVKPSDDWATaprLTLYKDDLVRGDYEFVAFDFYIDPIedRATEG 8 TIKDANESKAISW--EVKYPEVKPVDGWASaprIMLGNVNTTRGNNKYLTFDFYLKPT..QASKG 9 TIESANGSKALSF--NVEYPEKKPQDGWATaarLILKDINVERGNNKYLAFDFYLKPD..RASKG 10 NVENANNALKISNLNSKGSNDLSEGNFWAN...VRISADIWGQSINIYGDTKLTMDVI..APTPV 11 NVENANNALKISNLNSKGSNDLSEGNFWAN...VRISADIWGQSINIYGDTKLTMDVI..APTPV 12 TLANEKNALKITGLNN--SNDLTEGNYWAN...VRLSADGTSNKPNIFGAEKLTMDVI..TAAPA 13 TLSNNNDALQIEGLNV--SNDISEGNYWDN...VRLSADGWSENVDILGATELTIDVI..VEEPT 14 EVENENGTLRISGLNV--SNDLSDGNFWAN...FRLSANGWGKSVDILGAEKLTMDVI..VDEPT 15 EVENENGTLRISGLNV--SNDLSDGNFWAN...VRLSANGWGKSVDILGAEKLTMDVI..VDEPT 16 VIENEAGALKLSGLDA--SNDVSEGNYWAN...ARLSADGWGKSVDILGAEKLTMDVI..VDEPT 17 VIENEAGALKLSGLDA--SNDVSEGNYWAN...ARLSADGWGKSVDILGAEKLTMDVI..VDEPT 18 VIENEAGALKLSGLDA--SNDVSEGNYWAN...ARLSADGWGKSVDILGAEKLTMDVI..VDEPT 19 TIENVNDALQITGLDESNAIAGEEEDYWSN...VRISADEWEETFDILGAEELSMDVV..VDDPT 130 140 150 160 170 180 | | | | | | 1 AMNINLVFQPPANGyWVQAPKTFTINFEELEEan..QVNGLYHYEVKI------NVRDIANIQDD 2 AMNINLVFQPPANGyWVQAPKTFTINFEELEEan..QVNGLYHYEVKI------NVRDIANIQDD 3 AMNINLVFQPPTNGyWVQAPKTYTINFDELEEpn..QVNGLYHYEVKI------NVRDITNIQDD 4 AMNINLVFQPPTNGyWVQAPKTYTINFDELEEan..QVNGLYHYEVKI------NVRDITNIQDD 5 AMNINLVFQPPTNGyWVQAPKTYTINFDELEEan..QVNGLYHYEVKI------NVRDITNIQDD 6 AISINAVFQPPANGyWQEVPTTFEIDLTELDSatv.TSDELYHYEVKI------NIRDIEAITDD 7 AIDINLIFQPPAAGyWAQASETFEIDLEELDSatv.TDDGLYHYEVEI---------NIEDIEND 8 SLTISLAFAPPSLGfWAQATGDVNIPLSSLSKmkk.TTDGLYHFQVKY---DLDKINDGKVLTAN 9 MIQMFLAFSPPSLGyWAQVQDSFNIDLGKTVKckkdRRTEVYKFNVFF---DLDKIQDNKVLSPD 10 NVSIAAIPQSSTHG.WGNPTRARIVWTNNFVA....QTDGTYKATLTISTNDSPNFNTIATDAAD 11 NVSIAAIPQSSTHG.WGNPTRAIRVWTNNFVA....QTDGTYKATLTISTNDSPNFNTIATDAAD 12 TVSIAAIPQSSTHG.WANPTRAIAVKPADFVK....QEDGTYKAVLTITPADSPNFDSIAKDSKD 13 TVSIAAIPQGPAAG.WANPTRAIKVTEDDFES....FGDG-YKALVTITSEDSPSLETIATSPED 14 TVAIAAIPQSTKHG.WANPERSVKVTEADFVK....QDDGKYKALLTITGDDAPNLKNIGFDDEN 15 TVAIAAIPQSTKHG.WANPERSVKVTEADFVK....QDDGKYKALLTITGDDAPNLKNIGKDDEN 16 TVSIAAIPQGPSAN.WVNPNRAIKVEPTNFVP....LEDK-FKAELTITSADSPSLEAIAMHAEN 17 TVSIAAIPQGPSAN.WVNPNRAIKVEPTNFVP....LGDK-FKAELTITSADSPSLEAIAMHAEN 18 TVSIAAIPQGPSAN.WVNPNRAIKVEPTNFVP....LGDK-FKAELTITSADSPSLEAIAMHAEN 19 TVAIAAIPQSSAHE.WANASNSVLITEDDFEE....QEDGTYKALLTITGEDAPNLTNIAEDPEG 190 200 | | 1 TVLRNM.ILiFADVQ.SDFagrVFVDNVRF-- 2 TVLRNM.ILiFADVQ.SDFagrVFVDNVRF-- 3 TLLRNMmII.FADVE.SDFagrVFVDNVRF-- 4 TLLRNMmII.FADVE.SDFagrVFVDNVRF-- 5 TLLRNMmII.FADVE.SDFagrVFVDNVRF-- 6 TELRNL.LLiFADED.SDFagrVFVDNVRF-- 7 IELRNL.MLiFADDE.SDFagrVFLDNVRM-- 8 TVLRDItIV.VADGN.SDFpgtMYLDNIRF-- 9 TLLRDI.IVvIADGN.SDFkgkMYIDNVRFT- 10 SVVTNM.IL.FVGSN.SDN...ISLDNIKFTK 11 SVVTNM.IL.FVGSN.SDN...ISLDNIKFTK 12 STMTNI.IL.FVGAD.TDV...ISLDNITV-- 13 NTMSNI.IL.FVGTEdADV...ISLDNITV-- 14 NNMNNI.IL.FVGTEaADV...IYLDNIKVT- 15 NNMNNI.IL.FVGTEaADV...IYLDNIKVT- 16 NNINNI.IL.FVGTEgADV...IYLDNIKV-- 17 NNINNI.IL.FVGTEgADV...IYLDNIKV-- 18 NNINNI.IL.FVGTEgADV...IYLDNIKV-- 19 SELNNI.IL.FVGTEnADV...ISLDNITVT-