; SAM: prettyalign v3.2 (June, 2000) compiled 07/10/00_09:40:44 ; (c) 1992-1999 Regents of the University of California, Santa Cruz ; ; Sequence Alignment and Modeling Software System ; http://www.cse.ucsc.edu/research/compbio/sam.html ; ; ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- ; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: ; Extension and analysis of the basic method, CABIOS 12:95-107, 1996. ; K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting ; remote protein homologies, Bioinformatics 14(10):846-856, 1999. ; A. Krogh et al., Hidden Markov models in computational biology: ; Applications to protein modeling, JMB 235:1501-1531, Feb 1994. ; --------------------------------------------------------------------- ; Sequence numbers correspond to the following labels: ; 1 T0108 ; 2 gi|7459698|pir||JC5467_377:572 ; 3 gi|1339852|dbj|BAA12744.1|_377:572 ; 4 gi|1345369|dbj|BAA12826.1|_359:556 ; 5 gi|121795|sp|P19570|GUN3_BACS4_407:605 ; 6 gi|7475991|pir||JC5487_352:557 ; 7 gi|121837|sp|P06564|GUN_BACS1_571:758 ; 8 gi|80147|pir||JT0611_571:758 ; 9 gi|289266|gb|AAA73189.1|_570:757 ; 10 gi|7459698|pir||JC5467_573:760 ; 11 gi|1339852|dbj|BAA12744.1|_573:760 ; 12 gi|121838|sp|P19424|GUN_BACS6_557:750 ; 13 gi|1483210|emb|CAB01405.1|_358:572 ; 14 gi|80147|pir||JT0611_377:569 ; 15 gi|289266|gb|AAA73189.1|_376:568 ; 16 gi|121837|sp|P06564|GUN_BACS1_377:569 ; 17 gi|121838|sp|P19424|GUN_BACS6_752:940 ; 18 gi|121795|sp|P19570|GUN3_BACS4_611:795 ; 19 gi|1345369|dbj|BAA12826.1|_562:751 10 20 30 40 50 60 | | | | | | 1 MGASGQYVRARIKGAYYATPVDPVTNQ...PTAPKDFSSGFWDFNDGTTQGFGVNPDSPIT..AI 2 LSLSGEYVRARIKGAKY-EPIDRT---...-----RYTKVLWDFNDGTKQGFGVNSDSPNKe.AI 3 LSLSGEYVRARIKGAKY-EPIDRT---...-----RYTKVLWDFNDGTKQGFGVNSDSPNKe.AI 4 LSVSGEYARARIKGIKY-EPIERS---...--EKEEFTTNVWDFNDGTTQGFGINGDSPIKadSI 5 LSVSGEYVRSRILGEEY-QPIDRT---...--PREEFSEVIWDFNDGTTQGFVQNSDSPL-..DV 6 LTTSGQYVRARIKGAYYATPVDPVTNQ...PTAPKDFSSGFWDFNDGTTQGFGVNPDSPIT..AI 7 -------------GTEVEIPVVHD---...---PKGEAVLPSVFEDGTRQGWDWAGESGVKt.AL 8 -------------GTEVEIPVVHD---...---PKGEAVLPSVFEDGTRQGWDWAGESGVKt.AL 9 -------------GTEVEIPVVHD---...---PKGEAVLPSVFEDGTRQGWDWAGESGVKt.AL 10 -------------GKIVEIPVVHS---...---PKGDAALPSNFEYGTRQGWDWAGESGVKt.AL 11 -------------GKIVEIPVVHS---...---PKGDAALPSNFEYGTRQGWDWAGESGVKt.AL 12 LSLSGEYVRARIKGIEY-TPIDRT---...-----KFTKLVWDFNDGTTQGFQVNGDSPNKe.SI 13 LSISGEYVRARIKGIAY-QPIKRDNKIkegENAPLGEKVLPSTFEDDTRQGWDWDGPSGVKg.PI 14 LSLSGEYVRARIKGVNY-EPIDRT---...-----KYTKVLWDFNDGTKQGFGVNGDSPVE..DV 15 LSLSGEYVRARIKGVNY-EPIDRT---...-----KYTKVLWDFNDGTKQGFGVNGDSPVE..DV 16 LSLSGEYVRARIKGVNY-EPIDRT---...-----KYTKVLWDFNDGTKQGFGVNGDSPVE..DV 17 -------------GTEIEIEVIHD---...---EKGTATLPSTFEDGTRQGWDWHTESGVKt.AL 18 ----------------VPEPVEHD---...---TKGDSALPSDFEDGTRQGWEWDSESAVRt.AL 19 ---------------VVEAPVEHA---...---PIGKATLPSTFEDSTRQDWAWDATSGVQs.AL 70 80 90 100 110 120 | | | | | | 1 NVENANNALKISNLNSKGSNDLSEGNFWAN...VRISADIWGQSINIYGDTKLTMDVI..APTPV 2 EVENENGTLRISGLNV--SNDLSDGNFWAN...FRLSANGWGKSVDILGAEKLTMDVI..VDEPT 3 EVENENGTLRISGLNV--SNDLSDGNFWAN...VRLSANGWGKSVDILGAEKLTMDVI..VDEPT 4 TLANEKNALKITGLNN--SNDLTEGNYWAN...VRLSADGTSNKPNIFGAEKLTMDVI..TAAPA 5 TIENVNDALQITGLDESNAIAGEEEDYWSN...VRISADEWEETFDILGAEELSMDVV..VDDPT 6 NVENANNALKISNLNSKGSNDLSEGNFWAN...VRISADIWGQSINIYGDTKLTMDVI..APTPV 7 TIEEANGSNALSW--EFGYPEVKPSDNWATaprLDFWKSDLVRGENDYVTFDFYLDPV..RATEG 8 TIEEANGSNALSW--EFGYPEVKPSDNWATaprLDFWKSDLVRGENDYVTFDFYLDPV..RATEG 9 TIEEANGSNALSW--EFGYPEVKPSDNWATaprLDFWKSDLVRGENDYVTFDFYLDPV..RATEG 10 TIEEANGSQALSW--EFGYPEVKPSDNWASaprLDFHKDNLVRGENDYVAFDFYIDPA..RATEG 11 TIEEANGSQALSW--EFGYPEVKPSDNWASaprLDFHKDNLVRGENDYVAFDFYIDPA..RATEG 12 TLSNNNDALQIEGLNV--SNDISEGNYWDN...VRLSADGWSENVDILGATELTIDVI..VEEPT 13 TIESANGSKALSF--NVEYPEKKPQDGWATaarLILKDINVERGNNKYLAFDFYLKPD..RASKG 14 VIENEAGALKLSGLDA--SNDVSEGNYWAN...ARLSADGWGKSVDILGAEKLTMDVI..VDEPT 15 VIENEAGALKLSGLDA--SNDVSEGNYWAN...ARLSADGWGKSVDILGAEKLTMDVI..VDEPT 16 VIENEAGALKLSGLDA--SNDVSEGNYWAN...ARLSADGWGKSVDILGAEKLTMDVI..VDEPT 17 TIEEANGSNALSW--EYAYPEVKPSDGWATaprLDFWKDELVRGTSDYISFDFYIDAV..RASEG 18 TIEEANGSNALSW--EYAYPEVKPSDDWATaprLTLYKDDLVRGDYEFVAFDFYIDPIedRATEG 19 TIKDANESKAISW--EVKYPEVKPVDGWASaprIMLGNVNTTRGNNKYLTFDFYLKPT..QASKG 130 140 150 160 170 180 | | | | | | 1 NVSIAAIPQSSTHG.WGNPTRARIVWTNNFVA....QTDGTYKATLTISTNDSPNFNTIATDAAD 2 TVAIAAIPQSTKHG.WANPERSVKVTEADFVK....QDDGKYKALLTITGDDAPNLKNIGFDDEN 3 TVAIAAIPQSTKHG.WANPERSVKVTEADFVK....QDDGKYKALLTITGDDAPNLKNIGKDDEN 4 TVSIAAIPQSSTHG.WANPTRAIAVKPADFVK....QEDGTYKAVLTITPADSPNFDSIAKDSKD 5 TVAIAAIPQSSAHE.WANASNSVLITEDDFEE....QEDGTYKALLTITGEDAPNLTNIAEDPEG 6 NVSIAAIPQSSTHG.WGNPTRAIRVWTNNFVA....QTDGTYKATLTISTNDSPNFNTIATDAAD 7 AMNINLVFQPPTNGyWVQAPKTYTINFDELEEpn..QVNGLYHYEVKI------NVRDITNIQDD 8 AMNINLVFQPPTNGyWVQAPKTYTINFDELEEan..QVNGLYHYEVKI------NVRDITNIQDD 9 AMNINLVFQPPTNGyWVQAPKTYTINFDELEEan..QVNGLYHYEVKI------NVRDITNIQDD 10 AMNINLVFQPPANGyWVQAPKTFTINFEELEEan..QVNGLYHYEVKI------NVRDIANIQDD 11 AMNINLVFQPPANGyWVQAPKTFTINFEELEEan..QVNGLYHYEVKI------NVRDIANIQDD 12 TVSIAAIPQGPAAG.WANPTRAIKVTEDDFES....FGDG-YKALVTITSEDSPSLETIATSPED 13 MIQMFLAFSPPSLGyWAQVQDSFNIDLGKTVKckkdRRTEVYKFNVFF---DLDKIQDNKVLSPD 14 TVSIAAIPQGPSAN.WVNPNRAIKVEPTNFVP....LGDK-FKAELTITSADSPSLEAIAMHAEN 15 TVSIAAIPQGPSAN.WVNPNRAIKVEPTNFVP....LGDK-FKAELTITSADSPSLEAIAMHAEN 16 TVSIAAIPQGPSAN.WVNPNRAIKVEPTNFVP....LEDK-FKAELTITSADSPSLEAIAMHAEN 17 AISINAVFQPPANGyWQEVPTTFEIDLTELDSatv.TSDELYHYEVKI------NIRDIEAITDD 18 AIDINLIFQPPAAGyWAQASETFEIDLEELDSatv.TDDGLYHYEVEI---------NIEDIEND 19 SLTISLAFAPPSLGfWAQATGDVNIPLSSLSKmkk.TTDGLYHFQVKY---DLDKINDGKVLTAN 190 200 | | 1 SVVTNM.IL.FVGSN.SDN...ISLDNIKFTK 2 NNMNNI.IL.FVGTEaADV...IYLDNIKVT- 3 NNMNNI.IL.FVGTEaADV...IYLDNIKVT- 4 STMTNI.IL.FVGAD.TDV...ISLDNITV-- 5 SELNNI.IL.FVGTEnADV...ISLDNITVT- 6 SVVTNM.IL.FVGSN.SDN...ISLDNIKFTK 7 TLLRNMmII.FADVE.SDFagrVFVDNVRF-- 8 TLLRNMmII.FADVE.SDFagrVFVDNVRF-- 9 TLLRNMmII.FADVE.SDFagrVFVDNVRF-- 10 TVLRNM.ILiFADVQ.SDFagrVFVDNVRF-- 11 TVLRNM.ILiFADVQ.SDFagrVFVDNVRF-- 12 NTMSNI.IL.FVGTEdADV...ISLDNITV-- 13 TLLRDI.IVvIADGN.SDFkgkMYIDNVRFT- 14 NNINNI.IL.FVGTEgADV...IYLDNIKV-- 15 NNINNI.IL.FVGTEgADV...IYLDNIKV-- 16 NNINNI.IL.FVGTEgADV...IYLDNIKV-- 17 TELRNL.LLiFADED.SDFagrVFVDNVRF-- 18 IELRNL.MLiFADDE.SDFagrVFLDNVRM-- 19 TVLRDItIV.VADGN.SDFpgtMYLDNIRF--