PFRMAT SS
TARGET T0108
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with
METHOD window units
METHOD 5 10
METHOD 7 10
METHOD 5 10
METHOD 11 3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0108.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 6.95511
METHOD
MODEL 1
M C 0.754
G C 0.774
A C 0.790
S C 0.845
G H 0.570
Q H 0.618
Y H 0.543
V E 0.480
R E 0.493
A E 0.593
R E 0.632
I E 0.657
K C 0.509
G C 0.835
A E 0.571
Y E 0.749
Y E 0.775
A E 0.636
T C 0.492
P E 0.485
V E 0.567
D E 0.603
P C 0.499
V C 0.748
T C 0.797
N C 0.825
Q C 0.767
P C 0.788
T C 0.790
A C 0.776
P C 0.804
K C 0.746
D C 0.733
F C 0.628
S C 0.505
S C 0.476
G C 0.530
F E 0.531
W E 0.665
D E 0.682
F C 0.492
N C 0.701
D C 0.874
G C 0.941
T C 0.748
T C 0.716
Q C 0.720
G C 0.763
F C 0.707
G C 0.634
V C 0.730
N C 0.897
P C 0.894
D C 0.881
S C 0.843
P C 0.858
I C 0.703
T C 0.531
A E 0.634
I E 0.838
N E 0.855
V E 0.823
E E 0.607
N C 0.450
A H 0.453
N H 0.568
N H 0.575
A H 0.616
L H 0.794
K H 0.831
I H 0.894
S H 0.841
N C 0.579
L C 0.657
N C 0.659
S C 0.547
K C 0.577
G C 0.719
S C 0.915
N C 0.859
D C 0.817
L C 0.820
S C 0.897
E C 0.836
G C 0.862
N C 0.825
F C 0.782
W C 0.509
A E 0.700
N E 0.797
V E 0.915
R E 0.909
I E 0.823
S E 0.540
A C 0.668
D C 0.704
I C 0.658
W C 0.569
G C 0.542
Q C 0.611
S C 0.752
I C 0.595
N C 0.573
I E 0.396
Y E 0.594
G E 0.730
D E 0.728
T E 0.677
K E 0.804
L E 0.852
T E 0.867
M E 0.782
D C 0.536
V E 0.506
I E 0.559
A E 0.562
P C 0.665
T C 0.866
P C 0.783
V C 0.591
N E 0.708
V E 0.891
S E 0.946
I E 0.960
A E 0.923
A E 0.884
I E 0.683
P C 0.524
Q C 0.804
S C 0.927
S C 0.933
T C 0.936
H C 0.914
G C 0.888
W C 0.708
G C 0.579
N C 0.649
P C 0.721
T C 0.781
R C 0.664
A E 0.547
R E 0.753
I E 0.831
V E 0.808
W E 0.504
T H 0.451
N H 0.507
N H 0.481
F C 0.508
V E 0.564
A E 0.558
Q C 0.724
T C 0.913
D C 0.959
G C 0.808
T E 0.727
Y E 0.940
K E 0.984
A E 0.991
T E 0.994
L E 0.992
T E 0.980
I E 0.873
S E 0.555
T C 0.824
N C 0.886
D C 0.834
S C 0.914
P C 0.841
N C 0.841
F C 0.696
N C 0.683
T C 0.610
I C 0.502
A C 0.444
T C 0.468
D C 0.595
A C 0.774
A C 0.828
D C 0.866
S C 0.621
V E 0.474
V E 0.535
T E 0.508
N E 0.676
M E 0.947
I E 0.980
L E 0.992
F E 0.985
V E 0.885
G C 0.508
S C 0.907
N C 0.935
S C 0.943
D C 0.944
N E 0.767
I E 0.972
S E 0.983
L E 0.946
D E 0.617
N C 0.499
I E 0.674
K E 0.798
F E 0.821
T C 0.497
K C 0.855
END