; SAM: prettyalign v3.2 (June, 2000) compiled 07/10/00_09:40:44 ; (c) 1992-1999 Regents of the University of California, Santa Cruz ; ; Sequence Alignment and Modeling Software System ; http://www.cse.ucsc.edu/research/compbio/sam.html ; ; ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- ; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: ; Extension and analysis of the basic method, CABIOS 12:95-107, 1996. ; K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting ; remote protein homologies, Bioinformatics 14(10):846-856, 1999. ; A. Krogh et al., Hidden Markov models in computational biology: ; Applications to protein modeling, JMB 235:1501-1531, Feb 1994. ; --------------------------------------------------------------------- ; Sequence numbers correspond to the following labels: ; 1 T0107 ; 2 gi|5932491|gb|AAD32593.2|AF126689_1_868:1055 ; 3 gi|2494333|sp|Q60037|XYNA_THEMA_872:1059 ; 4 gi|7435341|pir||S72640_858:1041 ; 5 gi|538957|pir||A48490_859:1042 ; 6 gi|549463|sp|P36917|XYNA_THESA_859:1042 ; 7 gi|4894694|gb|AAD32594.1|AF126690_1_833:1020 ; 8 gi|2494334|sp|Q60042|XYNA_THENE_868:1055 ; 9 gi|586269|sp|P38535|XYNX_CLOTM_711:894 ; 10 gi|1222527|gb|AAC43719.1|_857:1040 ; 11 gi|3810965|dbj|BAA34091.1|_756:938 ; 12 gi|549463|sp|P36917|XYNA_THESA_685:855 ; 13 gi|538957|pir||A48490_685:855 ; 14 gi|7474379|pir||T17628_900:1085 ; 15 gi|586269|sp|P38535|XYNX_CLOTM_537:707 ; 16 gi|7522169|pir||T31082_1034:1222 ; 17 gi|1222527|gb|AAC43719.1|_683:853 ; 18 gi|7435341|pir||S72640_684:854 ; 19 gi|2494334|sp|Q60042|XYNA_THENE_698:863 ; 20 gi|4894694|gb|AAD32594.1|AF126690_1_663:828 ; 21 gi|5932491|gb|AAD32593.2|AF126689_1_698:863 ; 22 gi|2494333|sp|Q60037|XYNA_THEMA_702:867 ; 23 gi|5360744|dbj|BAA82143.1|_707:887 ; 24 gi|974180|dbj|BAA09971.1|_644:824 ; 25 gi|7476024|pir||T31351_888:1065 ; 26 gi|7474379|pir||T17628_723:893 ; 27 gi|3810965|dbj|BAA34091.1|_567:748 ; 28 gi|5880612|gb|AAD54768.1|AF120157_1_885:1073 ; 29 gi|7522169|pir||T31082_865:1028 10 20 30 40 50 60 | | | | | | 1 VATAKYGTPVIDGEIDEIWNTTEEI..ERKAVAMGSLDKNATAKVRVLWD.ENYLYVLAIVKDPV 2 VATAKYGTPVIDGEIDEIWNTTEEI..ETKAVAMGSLDKNATAKVRVLWD.ENYLYVLAIVKDPV 3 VATAKYGTPVIDGEIDEIWNTTEEI..ETKAVAMGSLDKNATAKVRVLWD.ENYLYVLAIVKDPV 4 IATAIYGTPVIDGKVDGIWNNAEAI..STNTWVLGS--NGATATAKMMWD.DKYLYILADVTDNN 5 IATAIYGTPVIDGKVDDIWNNVEPI..STNTWILGS--NGATATQKMMWD.DKYLYVLADVTDSN 6 IATAIYGTPVIDGKVDDIWNNVEPI..STNTWILGS--NGATATQKMMWD.DKYLYVLADVTDSN 7 VATAKYGTPVIDGEIDDIWNTTEEI..ETKSVAMGSLEKNATAKVRVLWD.EENLYVLAIVKDPV 8 VATAKYGTPVIDGEIDDIWNTTEEI..ETKSVAMGSLEKNATAKVRVLWD.EENLYVLAIVKDPV 9 VATAIYGTPVIDGKIDDIWNKVDAI..TTNTWVLGS--DGATATAKMMWD.DKYLYVLADVTDSN 10 IATAIYGTPVIDGKVDGVWNNPEAI..STNTWVLGS--NGATATAKMMWD.DKYLYILADVTDNN 11 --KVTYGKPVIDAKKDDIWKKAASI..KTDVWVIGN--SGATATAQLLWD.EKYLYVLADVKDPL 12 -AKALEGSPTIGANVDSSWKLVKPL..YVNTYVEGTV--GATATVKSMWD.TKNLYLLVQVSDNT 13 -AKALEGSPTIGANVDSSWKLVKPL..YVNTYVEGTV--GATATVKSMWD.TKNLYLLVQVSDNT 14 -AKVMYGTPTVDGKEDKLWKKAVTI..TTDVKVTGN--SGAKAKAKLLWD.EKYLYVLAEVKDPL 15 -AKALEGSPTIGANVDSSWKLVKPL..YANTYVEGTV--GATATVKSMWD.TKNLYLLVQVSDNT 16 FASAQKGTPKIDAELDDAWKNAQEIvtDTKVTVTGTVYDSAYAKARMMWD.ENCIYVYAVVYDPL 17 -AKALEGSPTIGANVDSSWKLVKPL..DANTYVKGTI--GATAAVKSMWD.TKNLYLLVQISDNT 18 -AKALEGSPTIGANVDSSWKLVKPL..YANTYVKGTI--GATAAVKSMWD.TKNLYLLVQVSDNT 19 -SKISEGEAVVVGMMDDSYMMSKPI..EIY-----DEEGNVKATIRAIWK.DSTIYVYGEVQDAT 20 -STISEGEAVVVGKMDDSYLMSKPI..EIY-----DEEGNVKATIRAIWK.GSTIYVYGEVQDAT 21 -SRISEGEAVVVGMMDDSYLMSKPI..EIL-----DEEGNVKATIRAVWK.DSTIYIYGEVQDKT 22 -SRISEGEAVVVGMMDDSYLMSKPI..EIL-----DEEGNVKATIRAVWK.DSTIYIYGEVQDKT 23 -AYAVYGTPEIDGKTDEVWNKAPEL..KINRYQTAWH--GADGTARVLYD.ENNLYVLIKVNDTQ 24 -INIKKGSATVDGDIEEAWDAAEAV..SLSI----KLGSDISADGKLLWD.EENLYVLVDVKDSV 25 -------APVIDGVVDEAWADAPVL..TTDVQVEGTP--GATAEIRVLWH.DDAVDVLATVADPV 26 -SQAKVSLPDRKGQEDIIWGAVRAL..PFSHVIEGAV--GTTGEVKTLWD.GKQLNLRIEVKDAT 27 -LKASPSFPNHKGQEDILWGAVKGL..EINHLADGT--SAVTGEARVMWD.AKKVNLRVEVKDTT 28 --------PEIDGQVDDAWADAEVV..STGKTVEGGA-DGATAQVRTLWSgDDTLYVLAEVTDPV 29 --YANNAQPRIDGIMDKEYKGTIPL..SVLNDAGQDI-----AQVRALWS.GNELCLYVTVNDSS 70 80 90 100 110 | | | | | 1 LNKDNSNPWEQDSVEIFIDENNHKTG..YYEDDDAQF.....RVNYMNEQTFGTGG...SPARFK 2 LNKDNSNPWEQDSVEIFIDENNHKTG..YYEDDDAQF.....RVNYMNEQTFGTGG...SPARFK 3 LNKDNSNPWEQDSVEIFIDENNHKTG..YYEDDDAQF.....RVNYMNEQTFGTGG...SPARFK 4 LNKSSVNPYEQDSVEVFVDQNNDKTT..YYENDDGQF.....RVNYDNEQSFGGST...NSNGFK 5 LNKSSINPYEQDSVEVFVDQNNDKTT..YYENDDGQY.....RVNYDNEQSFGGST...NSNGFK 6 LNKSSINPYEQDSVEVFVDQNNDKTT..YYENDDGQY.....RVNYDNEQSFGGST...NSNGFK 7 LNKDNSNPWEQDSVEIFIDENNHKTG..YYEDDDAQF.....RVNYMNEQSFGTGA...SAARFK 8 LNKDNSNPWEQDSVEIFIDENNHKTG..YYEDDDAQF.....RVNYMNEQSFGTGA...SAARFK 9 LNKSSVNPYEQDSVEVFVDQNNDKTS..YYESDDGQY.....RVNYDNEQSFGGST...NSNGFK 10 LNKSSVNPYEQDSVEVFVDQNNDKTT..YYENDDGQL.....RVNYDNEQSFGGST...NSNGFK 11 RSKLSSNAHEQDSIEIFIDPSKDQTT..FYQEDDAQY.....RVNFDNETSFGGNA...RKESFK 12 -------PSNNDGIEIFVDKNDDKST..SYETDDERY.....TIKRDGTGSS----...---DIT 13 -------PSNNDGIEIFVDKNDDKST..SYETDDERY.....TIKRDGTGSS----...---DIT 14 LSKKSANAHEQDSIELFIDLNKNQTN..SYEEDDAQY.....RVNFDNETSFGGSP...RKELFK 15 -------PSSNDGIEIFVDKNDNKST..SYETDDEHY.....TIKSDGTGSS----...---DIT 16 LNKANTNPWEQDSIEIFIDENNHKTP..YYEDDDVQY.....RVSYENTQTFGTNG...DAKNFI 17 -------PSNNDGIEISVDKNDNKST..TYESDDEHY.....IAKRDGTGSS----...---NIT 18 -------PSNNDGIEIFVDKNDNKST..TYESDDEHY.....IVKRDGTGSS----...---NIT 19 ------KKPAEDGVAIFINPNNERTP..YLQPDDTYV.....VLWTNWKSEVNRED...V--EVK 20 ------KKPAEDGVAIFINPNNERTP..YLQPDDTYV.....VLWTNWKSEVNRKD...V--EVK 21 ------KKPAEDGVAIFINPNNERTP..YLQPDDTYA.....VLWTNWKTEVDRED...V--QVK 22 ------KKPAEDGVAIFINPNNERTP..YLQPDDTYA.....VLWTNWKTEVNRED...V--QVK 23 LDKGSPNPWEQDSVEIFIDENNAKTS..FYEGDDGQY.....RVNFENETSFNPES...IAGGFE 24 LNEDSEDDYQQDSVEIFVDENNGKSG..GYEADDKQY.....RISFSNKQSFNGEKc..VAENIT 25 VDETATNAWEQDSVEIFVDPVNAKAG..AYTPQDGQY.....RISASNAQSVSGDLav.IGERLT 26 -------RLKGDQVEVFVSPEDMTAGkkNSTPKDGQY.....IFNRDG------GK...GKDQKL 27 -------RRKSDQVQVFLAEEVKGTG..AATSEADLTakkknPPSANGQYTFKRDGgk.GKDKNI 28 VDVSSADPWNQDSVELFLDLGNTKPA..AYGPNVSQM.....RISADNVTSFGTGDaaaQAARLT 29 V------DANNDRVVIFIDQDNGKLP..ELKDDDFWV.....SISRNGTKNQSKTG...Y--VKD 120 130 140 150 160 170 | | | | | | 1 TAVKLIEGGYIVEAAIKWKTIKPTPNTVI........GFNIQVNDAN.EKGQRVGIISWSDPTNN 2 TAVKLIEGGYIVEAAIKWKTIKPTPNTVI........GFNIQVNDAN.EKGQRVGIISWSDPTNN 3 TAVKLIEGGYIVEAAIKWKTIKPTPNTVI........GFNIQVNDAN.EKGQRVGIISWSDPTNN 4 SATSLTQNGYIVEEAIPWTSITPSNGTII........GFDLQVNDAD.ENGKRTGIVTWCDPSGN 5 SATSLTQSGYIVEEAIPWTSITPSNGTII........GFDLQVNNAD.ENGKRTGIVTWCDPSGN 6 SATSLTQSGYIVEEAIPWTSITPSNGTII........GFDLQVNNAD.ENGKRTGIVTWCDPSGN 7 TAVKLIEGGYIVEAAIKWKTIKPSSNTVI........GFNVQVNDAN.EKGQRVGIISWSDPTNN 8 TAVKLIEGGYIVEAAIKWKTIKPSPNTVI........GFNVQVNDAN.EKGQRVGIISWSDPTNN 9 SATSLTQSGYIVEEAIPWTSITLLNGTII........GFDLQVNDAD.ENGKRTGIVTWCDPSGN 10 SATSLTQNGYIVEEAIPWTSITPLNGTII........GFDLQVNDAD.ENGKRTGIVTWCDPSGN 11 SATRLTNGGYIVEVAIPLDSVRAEGQRWI........GFDLQVNDDGaGDGKRSSVSIWSDSSGN 12 KYVTSNADGYVAQLAIPIEDISPAVNDKI........GFDIRINDDK.GNGKIDAITVWNDYTNS 13 KYVTSNADGYVAQLAIPIEDISPAVNDKI........GFDIRINDDK.GNGKIDAITVWNDYTNS 14 SATRLTKEGYIVEAAIPLENVRTKESKWI........GFDLQVNDDGaGDGKRSSVFMWSDPSGN 15 KYVTSNADGYIVQLAIPIEDISPTLNDKI........GLDVRLNDDK.GSGSIDTVTVWNDYTNS 16 TATKIIPNGYVVEVQVYMRTTKLSEGMVI........GFDIQVNDAD.HTGGRVGVLTWNDKVGN 17 KYVMSNADGYVAQIAIPIEDISPVLNDKL........GFDIRINDDQ.GSGNVTAITAWNDYTNS 18 KYVMSNADGYVAQIAIPIEDISPVLNDKI........GFDIRINDDQ.GSGNINAITVWNDYTNS 19 KFVGPGFRRYSFEMSITIPGVEFKKDSYI........GFDVAVIDDG.K------WYSWSDTTNS 20 KFVGPGFRRYSFEMSITIPGVEYRKDSYI........GFDVAVIDDG.K------WYSWSDTTNS 21 KFVGPGFRRYSFEMSITIPGVEFKKDSYI........GFDAAVIDDG.K------WYSWSDTTNS 22 KFVGPGFRRYSFEMSITIPGVEFKKDSYI........GFDAAVIDDG.K------WYSWSDTTNS 23 SAAEVSGQLYLGSEN-TVQDREPVSNMQI........GFDVQINDG-.KNGVRQSIATWNDPTGN 24 SATKKTDDGYVVEAAIKWTDITPEVGGKA........GVELQVNDAT.AEGVRCGTISWADDTGT 25 SATALVDGGYVVEASIALGR-DVTVGDLV........GLDFQVNDAT.A-GVRGSVRTWTDPTGR 26 YQVKENKSGYVVYASLPLSSADLAAGKVL........SLDFRITDKQ.PNGK-TSIVVWNDVNNQ 27 YNVQETKTGYVVYASLPMSAALLTEGKVL........SLDFRITDEH.AAGK-TATIVWNDISNQ 28 SATARTDTGYVVELAVTLRGQSGGQDDVAlggadtfqGLDVQVNDGR.D-GARYAVHTWADPTGT 29 YVVLQQLNGYTMEVKLLLNN-SLAINTNI........GFDIAVIDNG.Q------QYSWNDRTNS 180 | 1 SWRDPSKFGNLRLIK 2 SWRDPSKFGNLRLIK 3 SWRDPSKFGNLRLIK 4 SWQDTSGFGNLML-- 5 SWQDTSGFGNLLL-- 6 SWQDTSGFGNLLL-- 7 SWRDPSKFGNLKLLK 8 SWRDPSKFGNLRLIK 9 SWQDTSGFGNLLL-- 10 SWQATSGFGNLML-- 11 SYQDTSGFGSLLL-- 12 QNTNTSYFGDIVLSK 13 QNTNTSYFGDIVLSK 14 SYRDTSGFGSLLLMK 15 QDTNTSYFGDIVLSK 16 NWRDTTKFGCLELV- 17 QDTNTAYFGDLVLSK 18 QDTNTAYFGDLVLSK 19 QKTNTMNYGTLKL-- 20 QKTNTMNYGTLKL-- 21 QKTNTMNYGTLKL-- 22 QKTNTMNYGTLKL-- 23 AWQDTSVFGILTL-- 24 GYMSPEVFGTVV--- 25 SYQSTARWGVAELV- 26 QPQKTENRGKLKL-- 27 QPDKPANRGKLKL-- 28 GYQTGARWGVAHLV- 29 QYFETDNYGILTM--