PFRMAT SS
TARGET T0107
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0107.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 13.2
METHOD
MODEL 1
V E 0.529
A E 0.569
T E 0.612
A E 0.626
K E 0.557
Y C 0.593
G C 0.798
T C 0.666
P C 0.596
V C 0.480
I E 0.476
D C 0.562
G C 0.605
E C 0.569
I C 0.439
D H 0.677
E H 0.731
I H 0.723
W H 0.728
N H 0.661
T H 0.550
T C 0.794
E C 0.751
E C 0.639
I E 0.502
E E 0.639
R E 0.655
K E 0.646
A E 0.772
V E 0.792
A E 0.765
M E 0.719
G E 0.554
S C 0.579
L C 0.796
D C 0.885
K C 0.851
N C 0.839
A E 0.653
T E 0.902
A E 0.970
K E 0.992
V E 0.993
R E 0.994
V E 0.992
L E 0.982
W E 0.929
D E 0.595
E C 0.882
N C 0.902
Y E 0.576
L E 0.951
Y E 0.996
V E 0.999
L E 0.999
A E 0.998
I E 0.984
V E 0.936
K E 0.719
D C 0.654
P C 0.866
V C 0.880
L C 0.850
N C 0.882
K C 0.648
D C 0.789
N C 0.849
S C 0.854
N C 0.852
P C 0.841
W C 0.803
E C 0.785
Q C 0.805
D C 0.706
S E 0.548
V E 0.924
E E 0.981
I E 0.996
F E 0.997
I E 0.983
D E 0.664
E C 0.946
N C 0.973
N C 0.929
H C 0.932
K C 0.856
T C 0.920
G C 0.921
Y C 0.870
Y C 0.804
E C 0.829
D C 0.757
D C 0.749
D C 0.742
A C 0.631
Q E 0.590
F E 0.843
R E 0.869
V E 0.805
N E 0.659
Y C 0.666
M C 0.841
N C 0.736
E E 0.582
Q E 0.788
T E 0.720
F E 0.530
G C 0.694
T C 0.757
G C 0.713
G C 0.657
S C 0.622
P C 0.592
A C 0.552
R C 0.478
F C 0.392
K E 0.542
T E 0.656
A E 0.731
V E 0.828
K E 0.783
L E 0.681
I C 0.560
E C 0.824
G C 0.921
G C 0.816
Y E 0.902
I E 0.984
V E 0.994
E E 0.990
A E 0.975
A E 0.942
I E 0.788
K E 0.690
W C 0.551
K C 0.695
T C 0.638
I E 0.486
K E 0.617
P E 0.562
T C 0.611
P C 0.804
N C 0.892
T C 0.513
V E 0.798
I E 0.926
G E 0.928
F E 0.871
N E 0.914
I E 0.939
Q E 0.955
V E 0.968
N E 0.925
D E 0.657
A C 0.911
N C 0.956
E C 0.918
K C 0.899
G C 0.729
Q E 0.593
R E 0.752
V E 0.874
G E 0.909
I E 0.949
I E 0.912
S E 0.864
W E 0.743
S E 0.559
D C 0.610
P C 0.877
T C 0.905
N C 0.911
N C 0.840
S C 0.695
W C 0.602
R C 0.630
D C 0.757
P C 0.690
S C 0.649
K C 0.576
F E 0.483
G E 0.574
N E 0.777
L E 0.913
R E 0.901
L E 0.897
I E 0.601
K C 0.884
END