# TARGET T0105 # Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net # This is a 4-layer network, with # window units # 5 10 # 7 10 # 5 10 # 11 3 (1 EHL2 ) # The input amino acid frequencies were determined from # alignment T0105.t2k.a2m.gz # with weighted counts, using EntropyWeight(1.4 bits/column, 10) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 13.4442 # # CHAIN 1 Pos AA E H C 10N 1S 5N 5N 5N 1 D 0.052 0.152 0.796 2 E 0.048 0.181 0.772 3 N 0.057 0.172 0.771 4 I 0.101 0.215 0.684 5 N 0.142 0.201 0.657 6 F 0.150 0.245 0.605 7 K 0.158 0.181 0.661 8 Q 0.210 0.144 0.646 9 S 0.239 0.096 0.665 10 E 0.390 0.041 0.569 11 L 0.485 0.025 0.491 12 P 0.514 0.016 0.470 13 V 0.677 0.015 0.308 14 T 0.690 0.014 0.296 15 C 0.465 0.043 0.492 16 G 0.287 0.037 0.676 17 E 0.357 0.038 0.605 18 V 0.569 0.026 0.405 19 K 0.780 0.018 0.202 20 G 0.900 0.012 0.088 21 T 0.952 0.010 0.037 22 L 0.958 0.012 0.030 23 Y 0.930 0.020 0.049 24 K 0.874 0.034 0.092 25 E 0.733 0.071 0.196 26 R 0.658 0.080 0.263 27 F 0.344 0.108 0.548 28 K 0.152 0.056 0.792 29 Q 0.105 0.084 0.811 30 G 0.094 0.044 0.861 31 T 0.147 0.038 0.816 32 S 0.200 0.021 0.779 33 K 0.327 0.043 0.630 34 K 0.517 0.044 0.438 35 C 0.847 0.032 0.122 36 I 0.933 0.011 0.057 37 Q 0.907 0.006 0.088 38 S 0.752 0.007 0.241 39 E 0.218 0.020 0.762 40 D 0.053 0.019 0.928 41 K 0.096 0.029 0.875 42 K 0.431 0.015 0.554 43 W 0.684 0.009 0.307 44 F 0.691 0.005 0.304 45 T 0.339 0.006 0.655 46 P 0.080 0.157 0.764 47 R 0.078 0.182 0.740 48 E 0.325 0.223 0.451 49 F 0.536 0.132 0.333 50 E 0.586 0.143 0.271 51 I 0.474 0.145 0.381 52 E 0.228 0.187 0.584 53 G 0.145 0.161 0.694 54 D 0.060 0.113 0.826 55 R 0.033 0.172 0.795 56 G 0.023 0.174 0.803 57 A 0.015 0.214 0.771 58 S 0.011 0.360 0.628 59 K 0.028 0.354 0.618 60 N 0.025 0.526 0.449 61 W 0.002 0.971 0.027 62 K 0.003 0.976 0.021 63 L 0.004 0.986 0.009 64 S 0.010 0.974 0.016 65 I 0.023 0.959 0.017 66 R 0.020 0.942 0.038 67 C 0.024 0.874 0.102 68 G 0.015 0.569 0.417 69 G 0.019 0.085 0.896 70 Y 0.125 0.098 0.778 71 T 0.155 0.240 0.605 72 L 0.002 0.982 0.016 73 K 0.001 0.991 0.008 74 V 0.001 0.991 0.008 75 L 0.003 0.983 0.014 76 M 0.003 0.979 0.018 77 E 0.003 0.955 0.042 78 N 0.002 0.905 0.094 79 K 0.006 0.055 0.939 80 F 0.080 0.075 0.845 81 L 0.117 0.084 0.799 82 P 0.106 0.044 0.850 83 E 0.100 0.039 0.861 84 P 0.048 0.034 0.918 85 P 0.041 0.073 0.886 86 S 0.057 0.172 0.771 87 T 0.071 0.206 0.723 88 R 0.134 0.117 0.749 89 K 0.270 0.109 0.621 90 K 0.483 0.081 0.436 91 V 0.622 0.068 0.310 92 T 0.678 0.036 0.286 93 I 0.539 0.021 0.440 94 K 0.139 0.007 0.854