# TARGET T0104 # Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net # This is a 4-layer network, with # window units # 5 10 # 7 10 # 5 10 # 11 3 (1 EHL2 ) # The input amino acid frequencies were determined from # alignment T0104.t2k.a2m.gz # with weighted counts, using EntropyWeight(1.4 bits/column, 10) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 20.709 # # CHAIN 1 Pos AA E H C 10N 1S 5N 5N 5N 1 M 0.068 0.176 0.756 2 E 0.044 0.194 0.762 3 S 0.052 0.280 0.667 4 L 0.188 0.286 0.526 5 T 0.290 0.292 0.419 6 Q 0.342 0.324 0.334 7 Y 0.256 0.313 0.431 8 I 0.110 0.283 0.608 9 P 0.061 0.363 0.576 10 D 0.027 0.438 0.535 11 E 0.009 0.828 0.163 12 F 0.008 0.871 0.121 13 S 0.006 0.915 0.079 14 M 0.007 0.919 0.074 15 L 0.004 0.943 0.053 16 R 0.003 0.947 0.050 17 F 0.002 0.947 0.050 18 G 0.002 0.908 0.090 19 K 0.001 0.955 0.044 20 K 0.001 0.965 0.034 21 F 0.001 0.966 0.032 22 A 0.001 0.971 0.028 23 E 0.001 0.978 0.021 24 I 0.002 0.969 0.030 25 L 0.005 0.956 0.039 26 L 0.006 0.945 0.049 27 K 0.013 0.895 0.092 28 L 0.027 0.823 0.150 29 H 0.073 0.438 0.489 30 T 0.072 0.197 0.732 31 E 0.018 0.022 0.960 32 K 0.018 0.013 0.969 33 A 0.035 0.003 0.961 34 I 0.463 0.003 0.535 35 M 0.938 0.002 0.060 36 V 0.987 0.001 0.011 37 Y 0.984 0.001 0.015 38 L 0.909 0.002 0.089 39 N 0.668 0.004 0.328 40 G 0.306 0.010 0.684 41 D 0.291 0.036 0.673 42 L 0.143 0.148 0.709 43 G 0.041 0.148 0.811 44 A 0.018 0.391 0.591 45 G 0.014 0.707 0.280 46 K 0.018 0.873 0.109 47 T 0.010 0.957 0.033 48 T 0.004 0.986 0.010 49 L 0.002 0.992 0.006 50 T 0.001 0.997 0.002 51 R 0.001 0.998 0.002 52 G 0.001 0.997 0.003 53 M 0.001 0.993 0.006 54 L 0.001 0.991 0.008 55 Q 0.001 0.984 0.015 56 G 0.002 0.955 0.043 57 I 0.007 0.811 0.183 58 G 0.009 0.091 0.899 59 H 0.040 0.089 0.871 60 Q 0.111 0.125 0.764 61 G 0.200 0.120 0.680 62 N 0.398 0.070 0.533 63 V 0.610 0.042 0.348 64 K 0.587 0.026 0.387 65 S 0.311 0.016 0.672 66 P 0.151 0.503 0.346 67 T 0.224 0.490 0.286 68 Y 0.238 0.641 0.122 69 T 0.358 0.560 0.081 70 L 0.492 0.451 0.057 71 V 0.489 0.425 0.086 72 E 0.516 0.320 0.164 73 E 0.369 0.344 0.287 74 Y 0.368 0.156 0.476 75 N 0.174 0.140 0.686 76 I 0.055 0.121 0.824 77 A 0.035 0.055 0.910 78 G 0.055 0.031 0.914 79 K 0.211 0.025 0.764 80 M 0.461 0.013 0.527 81 I 0.816 0.008 0.176 82 Y 0.890 0.008 0.102 83 H 0.931 0.005 0.064 84 F 0.915 0.003 0.081 85 D 0.871 0.004 0.125 86 L 0.938 0.008 0.054 87 Y 0.933 0.015 0.052 88 R 0.870 0.028 0.102 89 L 0.543 0.060 0.397 90 A 0.206 0.052 0.742 91 D 0.053 0.093 0.854 92 P 0.007 0.771 0.222 93 E 0.009 0.840 0.151 94 E 0.013 0.832 0.155 95 L 0.019 0.790 0.191 96 E 0.023 0.770 0.207 97 F 0.018 0.742 0.240 98 M 0.012 0.677 0.311 99 G 0.016 0.476 0.507 100 I 0.014 0.730 0.255 101 R 0.021 0.747 0.232 102 D 0.050 0.720 0.230 103 Y 0.073 0.627 0.300 104 F 0.115 0.479 0.407 105 N 0.063 0.274 0.663 106 T 0.054 0.092 0.854 107 D 0.087 0.042 0.871 108 S 0.289 0.003 0.708 109 I 0.897 0.001 0.102 110 C 0.984 0.001 0.015 111 L 0.994 0.001 0.005 112 I 0.973 0.002 0.025 113 E 0.812 0.003 0.185 114 W 0.424 0.017 0.559 115 S 0.118 0.080 0.803 116 E 0.051 0.486 0.463 117 K 0.021 0.656 0.322 118 G 0.025 0.726 0.250 119 Q 0.029 0.702 0.269 120 G 0.056 0.480 0.465 121 I 0.081 0.359 0.560 122 L 0.063 0.140 0.797 123 P 0.037 0.075 0.888 124 E 0.032 0.238 0.730 125 A 0.108 0.116 0.776 126 D 0.346 0.027 0.627 127 I 0.778 0.004 0.218 128 L 0.964 0.001 0.035 129 V 0.990 0.001 0.010 130 N 0.994 0.001 0.006 131 I 0.991 0.001 0.009 132 D 0.970 0.001 0.029 133 Y 0.908 0.002 0.090 134 Y 0.677 0.004 0.319 135 D 0.294 0.012 0.694 136 D 0.052 0.047 0.900 137 A 0.039 0.054 0.907 138 R 0.209 0.051 0.740 139 N 0.563 0.019 0.418 140 I 0.870 0.006 0.124 141 E 0.936 0.005 0.060 142 L 0.946 0.008 0.046 143 I 0.943 0.009 0.047 144 A 0.847 0.016 0.138 145 Q 0.624 0.030 0.346 146 T 0.253 0.084 0.663 147 N 0.113 0.219 0.668 148 L 0.035 0.620 0.344 149 G 0.024 0.779 0.197 150 K 0.014 0.930 0.055 151 N 0.008 0.967 0.025 152 I 0.011 0.967 0.022 153 I 0.008 0.970 0.022 154 S 0.007 0.958 0.035 155 A 0.004 0.935 0.061 156 F 0.010 0.823 0.167 157 S 0.008 0.530 0.462 158 N 0.003 0.025 0.972