PFRMAT SS
TARGET T0104
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0104.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 20.709
METHOD
MODEL 1
M C 0.756
E C 0.762
S C 0.667
L C 0.526
T C 0.419
Q E 0.342
Y C 0.431
I C 0.608
P C 0.576
D C 0.535
E H 0.828
F H 0.871
S H 0.915
M H 0.919
L H 0.943
R H 0.947
F H 0.947
G H 0.908
K H 0.955
K H 0.965
F H 0.966
A H 0.971
E H 0.978
I H 0.969
L H 0.956
L H 0.945
K H 0.895
L H 0.823
H C 0.489
T C 0.732
E C 0.960
K C 0.969
A C 0.961
I C 0.535
M E 0.938
V E 0.987
Y E 0.984
L E 0.909
N E 0.668
G C 0.684
D C 0.673
L C 0.709
G C 0.811
A C 0.591
G H 0.707
K H 0.873
T H 0.957
T H 0.986
L H 0.992
T H 0.997
R H 0.998
G H 0.997
M H 0.993
L H 0.991
Q H 0.984
G H 0.955
I H 0.811
G C 0.899
H C 0.871
Q C 0.764
G C 0.680
N C 0.533
V E 0.610
K E 0.587
S C 0.672
P H 0.503
T H 0.490
Y H 0.641
T H 0.560
L E 0.492
V E 0.489
E E 0.516
E E 0.369
Y C 0.476
N C 0.686
I C 0.824
A C 0.910
G C 0.914
K C 0.764
M C 0.527
I E 0.816
Y E 0.890
H E 0.931
F E 0.915
D E 0.871
L E 0.938
Y E 0.933
R E 0.870
L E 0.543
A C 0.742
D C 0.854
P H 0.771
E H 0.840
E H 0.832
L H 0.790
E H 0.770
F H 0.742
M H 0.677
G C 0.507
I H 0.730
R H 0.747
D H 0.720
Y H 0.627
F H 0.479
N C 0.663
T C 0.854
D C 0.871
S C 0.708
I E 0.897
C E 0.984
L E 0.994
I E 0.973
E E 0.812
W C 0.559
S C 0.803
E H 0.486
K H 0.656
G H 0.726
Q H 0.702
G H 0.480
I C 0.560
L C 0.797
P C 0.888
E C 0.730
A C 0.776
D C 0.627
I E 0.778
L E 0.964
V E 0.990
N E 0.994
I E 0.991
D E 0.970
Y E 0.908
Y E 0.677
D C 0.694
D C 0.900
A C 0.907
R C 0.740
N E 0.563
I E 0.870
E E 0.936
L E 0.946
I E 0.943
A E 0.847
Q E 0.624
T C 0.663
N C 0.668
L H 0.620
G H 0.779
K H 0.930
N H 0.967
I H 0.967
I H 0.970
S H 0.958
A H 0.935
F H 0.823
S H 0.530
N C 0.972
END