PFRMAT SS TARGET T0103 AUTHOR 3670-4530-6947 METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 10 METHOD 7 10 METHOD 5 10 METHOD 11 3 (1 EHL2 ) METHOD The input amino acid frequencies were determined from METHOD alignment T0103.t2k_trimmed.a2m.gz METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10) METHOD The weighting was determined by the posterior distribution METHOD after regularizing with /projects/compbio/lib/recode3.20comp. METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 46.9461 METHOD MODEL 1 A C 0.720 A C 0.688 G C 0.626 T C 0.543 A C 0.579 K C 0.747 G C 0.855 H C 0.860 N C 0.884 P C 0.842 T C 0.787 E C 0.763 F C 0.836 P C 0.832 T C 0.781 I C 0.721 Y C 0.658 D C 0.653 A C 0.537 S E 0.404 S E 0.529 A E 0.525 P E 0.518 T E 0.529 A E 0.550 A E 0.493 N C 0.810 T C 0.859 T C 0.661 V C 0.485 G E 0.562 I E 0.569 I E 0.515 T E 0.480 I E 0.461 G C 0.486 G C 0.466 V E 0.441 S E 0.503 Q E 0.440 T C 0.394 L H 0.455 Q H 0.451 D H 0.432 L H 0.728 Q H 0.765 Q H 0.818 F H 0.758 T H 0.646 S C 0.484 A C 0.542 N C 0.799 G C 0.668 L C 0.723 A C 0.753 S C 0.729 V C 0.725 N C 0.566 T E 0.892 Q E 0.929 T E 0.934 I E 0.939 Q E 0.896 T E 0.808 G E 0.548 S C 0.723 S C 0.854 N C 0.867 G C 0.858 D C 0.832 Y C 0.849 S C 0.818 D C 0.684 D C 0.580 Q C 0.540 Q C 0.628 G C 0.705 Q C 0.687 G C 0.488 E E 0.503 W E 0.592 D E 0.500 L C 0.481 D C 0.491 S E 0.410 Q E 0.507 S E 0.521 I E 0.457 V E 0.390 G C 0.427 S C 0.498 A C 0.657 G C 0.633 G C 0.568 A C 0.449 V H 0.387 Q E 0.372 Q E 0.453 L E 0.502 L E 0.531 F E 0.440 Y C 0.432 M C 0.613 A C 0.762 D C 0.685 Q C 0.579 S C 0.524 A C 0.514 S C 0.540 G H 0.473 N H 0.615 T H 0.844 G H 0.908 L H 0.933 T H 0.946 Q H 0.969 A H 0.973 F H 0.964 N H 0.958 Q H 0.949 A H 0.916 V H 0.800 S H 0.495 D C 0.712 N C 0.927 V C 0.814 A C 0.654 K E 0.571 V E 0.934 I E 0.970 N E 0.953 V E 0.889 S E 0.681 L C 0.559 G C 0.799 W C 0.793 C C 0.836 E C 0.828 A C 0.819 D C 0.715 A C 0.598 N C 0.538 A C 0.580 D C 0.610 G C 0.506 T H 0.622 L H 0.796 Q H 0.846 A H 0.872 E H 0.913 D H 0.939 R H 0.958 I H 0.968 F H 0.967 A H 0.978 T H 0.972 A H 0.976 A H 0.971 A H 0.944 Q H 0.763 G C 0.987 Q C 0.718 T E 0.885 F E 0.985 S E 0.991 V E 0.974 S E 0.856 S E 0.589 G C 0.708 D C 0.835 E C 0.882 G C 0.922 V C 0.864 Y C 0.813 E C 0.674 C C 0.623 N C 0.633 N C 0.692 R C 0.819 G C 0.807 Y C 0.777 P C 0.734 D C 0.840 G C 0.877 S C 0.897 T C 0.867 Y C 0.828 S C 0.857 V C 0.866 S C 0.853 W C 0.819 P C 0.826 A C 0.706 S C 0.729 S C 0.859 P C 0.814 N C 0.592 V E 0.779 I E 0.930 A E 0.969 V E 0.950 G E 0.908 G E 0.842 T E 0.734 T E 0.565 L C 0.714 Y C 0.802 T C 0.758 T C 0.695 S C 0.632 A C 0.650 G C 0.597 A C 0.462 Y E 0.440 S C 0.488 N C 0.626 E C 0.756 T C 0.551 V H 0.440 W H 0.506 N H 0.533 E H 0.531 G H 0.459 L H 0.366 D C 0.453 S C 0.626 N C 0.640 G C 0.544 K C 0.439 L E 0.465 W C 0.460 A C 0.611 T C 0.703 G C 0.769 G C 0.802 G C 0.729 Y C 0.625 S C 0.556 V C 0.527 Y C 0.546 E C 0.638 S C 0.712 K C 0.742 P C 0.694 S C 0.613 W C 0.510 Q H 0.480 S H 0.505 V H 0.513 V H 0.482 S H 0.451 G C 0.427 T C 0.407 P C 0.421 G C 0.481 R C 0.579 R C 0.582 L C 0.598 L C 0.693 P C 0.612 D E 0.538 I E 0.730 S E 0.812 F E 0.834 D E 0.670 A C 0.684 A C 0.914 Q C 0.908 G C 0.752 T C 0.527 G E 0.814 A E 0.893 L E 0.908 I E 0.840 Y E 0.724 N C 0.501 Y C 0.827 G C 0.877 Q C 0.776 L C 0.575 Q C 0.511 Q E 0.557 I C 0.507 G C 0.690 G C 0.616 T C 0.499 S C 0.434 L H 0.474 A H 0.573 S H 0.676 P H 0.846 I H 0.919 F H 0.976 V H 0.990 G H 0.996 L H 0.998 W H 0.999 A H 0.999 R H 0.997 L H 0.991 Q H 0.981 S H 0.917 A H 0.798 N H 0.542 S C 0.864 N C 0.902 S C 0.855 L C 0.796 G C 0.933 F C 0.904 P C 0.918 A H 0.906 A H 0.971 S H 0.985 F H 0.988 Y H 0.991 S H 0.990 A H 0.986 I H 0.974 S H 0.944 S H 0.845 T H 0.556 P H 0.516 S C 0.481 L C 0.470 V C 0.494 H C 0.598 D C 0.774 V C 0.661 K C 0.613 S C 0.653 G C 0.747 N C 0.789 N C 0.776 G C 0.616 Y E 0.445 G C 0.456 G C 0.594 Y C 0.708 G C 0.788 Y C 0.642 N C 0.602 A C 0.656 G C 0.667 T C 0.663 G C 0.777 W C 0.759 D C 0.815 Y C 0.754 P C 0.674 T C 0.642 G C 0.736 W C 0.658 G C 0.569 S C 0.503 L E 0.498 D C 0.724 I H 0.935 A H 0.961 K H 0.982 L H 0.957 S H 0.961 A H 0.960 Y H 0.963 I H 0.920 R H 0.811 S H 0.744 N C 0.827 G C 0.866 F C 0.867 G C 0.927 H C 0.945 END