PFRMAT SS TARGET T0103 AUTHOR 3670-4530-6947 METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 10 METHOD 7 10 METHOD 5 10 METHOD 11 3 (1 EHL2 ) METHOD The input amino acid frequencies were determined from METHOD alignment T0103.t2k.a2m.gz METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10) METHOD The weighting was determined by the posterior distribution METHOD after regularizing with /projects/compbio/lib/recode3.20comp. METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 70.4321 METHOD MODEL 1 A C 0.693 A C 0.632 G C 0.591 T C 0.538 A C 0.592 K C 0.791 G C 0.881 H C 0.896 N C 0.919 P C 0.860 T C 0.794 E C 0.765 F C 0.852 P C 0.850 T C 0.800 I C 0.733 Y C 0.665 D C 0.644 A C 0.511 S E 0.484 S E 0.606 A E 0.590 P E 0.587 T E 0.612 A E 0.625 A E 0.563 N C 0.798 T C 0.864 T C 0.656 V E 0.495 G E 0.604 I E 0.614 I E 0.549 T E 0.511 I E 0.491 G C 0.479 G C 0.445 V E 0.500 S E 0.563 Q E 0.495 T C 0.383 L H 0.422 Q H 0.416 D H 0.400 L H 0.773 Q H 0.809 Q H 0.853 F H 0.788 T H 0.666 S H 0.478 A C 0.536 N C 0.795 G C 0.678 L C 0.747 A C 0.775 S C 0.741 V C 0.694 N C 0.499 T E 0.921 Q E 0.949 T E 0.951 I E 0.953 Q E 0.912 T E 0.826 G E 0.560 S C 0.726 S C 0.855 N C 0.872 G C 0.859 D C 0.835 Y C 0.847 S C 0.822 D C 0.696 D C 0.600 Q C 0.551 Q C 0.645 G C 0.709 Q C 0.688 G C 0.470 E E 0.544 W E 0.629 D E 0.543 L C 0.454 D C 0.473 S E 0.440 Q E 0.533 S E 0.539 I E 0.480 V E 0.412 G C 0.430 S C 0.509 A C 0.689 G C 0.649 G C 0.587 A C 0.455 V H 0.376 Q E 0.405 Q E 0.491 L E 0.533 L E 0.560 F E 0.452 Y C 0.451 M C 0.632 A C 0.771 D C 0.690 Q C 0.585 S C 0.537 A C 0.536 S C 0.576 G C 0.506 N H 0.583 T H 0.846 G H 0.910 L H 0.936 T H 0.949 Q H 0.972 A H 0.976 F H 0.968 N H 0.966 Q H 0.960 A H 0.934 V H 0.835 S H 0.554 D C 0.686 N C 0.932 V C 0.819 A C 0.645 K E 0.584 V E 0.944 I E 0.974 N E 0.956 V E 0.894 S E 0.683 L C 0.564 G C 0.796 W C 0.789 C C 0.833 E C 0.831 A C 0.829 D C 0.735 A C 0.613 N C 0.550 A C 0.583 D C 0.612 G C 0.485 T H 0.655 L H 0.827 Q H 0.871 A H 0.894 E H 0.928 D H 0.949 R H 0.964 I H 0.972 F H 0.970 A H 0.980 T H 0.974 A H 0.978 A H 0.973 A H 0.949 Q H 0.762 G C 0.987 Q C 0.740 T E 0.891 F E 0.986 S E 0.992 V E 0.975 S E 0.854 S E 0.589 G C 0.710 D C 0.826 E C 0.880 G C 0.924 V C 0.869 Y C 0.823 E C 0.687 C C 0.625 N C 0.631 N C 0.691 R C 0.817 G C 0.814 Y C 0.796 P C 0.757 D C 0.862 G C 0.885 S C 0.897 T C 0.865 Y C 0.824 S C 0.847 V C 0.862 S C 0.848 W C 0.804 P C 0.838 A C 0.728 S C 0.768 S C 0.900 P C 0.849 N C 0.578 V E 0.823 I E 0.946 A E 0.977 V E 0.958 G E 0.916 G E 0.852 T E 0.749 T E 0.581 L C 0.729 Y C 0.821 T C 0.767 T C 0.679 S C 0.609 A C 0.622 G C 0.579 A C 0.449 Y E 0.471 S C 0.487 N C 0.632 E C 0.749 T C 0.537 V H 0.455 W H 0.528 N H 0.560 E H 0.550 G H 0.470 L H 0.374 D C 0.449 S C 0.627 N C 0.648 G C 0.556 K C 0.453 L E 0.455 W C 0.471 A C 0.622 T C 0.708 G C 0.765 G C 0.800 G C 0.726 Y C 0.626 S C 0.559 V C 0.533 Y C 0.554 E C 0.661 S C 0.735 K C 0.768 P C 0.732 S C 0.636 W C 0.524 Q H 0.482 S H 0.506 V H 0.512 V H 0.479 S H 0.449 G C 0.435 T C 0.411 P C 0.425 G C 0.489 R C 0.600 R C 0.605 L C 0.618 L C 0.709 P C 0.617 D E 0.564 I E 0.753 S E 0.837 F E 0.863 D E 0.711 A C 0.660 A C 0.913 Q C 0.910 G C 0.746 T C 0.516 G E 0.825 A E 0.894 L E 0.898 I E 0.806 Y E 0.656 N C 0.569 Y C 0.841 G C 0.863 Q C 0.753 L C 0.567 Q C 0.517 Q E 0.559 I C 0.491 G C 0.678 G C 0.604 T C 0.495 S C 0.425 L H 0.498 A H 0.591 S H 0.688 P H 0.859 I H 0.927 F H 0.979 V H 0.991 G H 0.996 L H 0.998 W H 0.999 A H 0.999 R H 0.997 L H 0.992 Q H 0.979 S H 0.911 A H 0.785 N H 0.509 S C 0.852 N C 0.910 S C 0.864 L C 0.807 G C 0.943 F C 0.910 P C 0.929 A H 0.925 A H 0.977 S H 0.988 F H 0.990 Y H 0.993 S H 0.993 A H 0.989 I H 0.980 S H 0.957 S H 0.878 T H 0.636 P H 0.548 S H 0.473 L C 0.464 V C 0.496 H C 0.605 D C 0.787 V C 0.669 K C 0.615 S C 0.653 G C 0.748 N C 0.795 N C 0.788 G C 0.630 Y C 0.441 G C 0.452 G C 0.579 Y C 0.694 G C 0.785 Y C 0.631 N C 0.587 A C 0.655 G C 0.669 T C 0.680 G C 0.811 W C 0.773 D C 0.815 Y C 0.744 P C 0.640 T C 0.611 G C 0.722 W C 0.651 G C 0.550 S C 0.481 L E 0.508 D C 0.724 I H 0.946 A H 0.969 K H 0.986 L H 0.969 S H 0.971 A H 0.970 Y H 0.971 I H 0.927 R H 0.829 S H 0.754 N C 0.857 G C 0.886 F C 0.889 G C 0.943 H C 0.944 END