make -k T0101-blast.rdb T0101-double-blast.rdb
make[1]: Entering directory `/export/projects/compbio/experiments/casp4/t101'
/projects/compbio/experiments/casp4/scripts/single-blast -q T0101.seq -interdb /projects/compbio/data/nrp/nr -db /projects/compbio/data/pdb/all-protein > T0101-blast.rdb

starting T0101 with E=10
/projects/compbio/experiments/casp4/scripts/double-blast -q T0101.seq -interdb /projects/compbio/data/nrp/nr -db /projects/compbio/data/pdb/all-protein > T0101-double-blast.rdb

starting T0101 with E=0.000050
T0101 T0101 blasting:
T0101 gi|129764|sp|P22751|PELX_ERWCH_459:666 blasting:
T0101 gi|3914287|sp|Q47473|PELL_ERWCH_26:425 blasting:
T0101 gi|2121035|pir||S69796_26:425 blasting:
T0101 gi|4499931|emb|CAB39324.1|_461:668 blasting:
T0101 gi|4499931|emb|CAB39324.1|_393:665 blasting:
T0101 gi|5256971|dbj|BAA81753.1|_289:665 blasting:
T0101 gi|6175856|gb|AAF05308.1|AF171228_1_26:425 blasting:
make[1]: Leaving directory `/export/projects/compbio/experiments/casp4/t101'
make -k T0101.t2k.a2m.gz	\
	T0101.t2k.pa \
	T0101.t2k.pa.html \
	T0101.t2k.2d \
	T0101.t2k.tree \
	T0101.t2k_sorted.pa \
	T0101.t2k.tree.ps \
	T0101.t2k.tree-unroot.ps 
make[1]: Entering directory `/export/projects/compbio/experiments/casp4/t101'
/projects/compbio/experiments/models.97/scripts2k/target2k -out T0101.t2k \
	-seed T0101.seq \
	-all


@@@@ chgrp protein /projects/compbio/tmp/target2k-beta-9448


@@@@ cp /export/projects/compbio/experiments/casp4/t101/T0101.seq m0.a2m


@@@@ checkseq foo -alphabet protein -db m0.a2m > init.check
SAM: checkseq v3.1b (February 24, 1999) compiled 04/18/00_11:44:44
# About to count sequences in /projects/compbio/data/nrp/nr
/projects/compbio/experiments/models.97/scripts2k/target2k: E-value thresholds used are
prefilter: 0.01,	actual: 0.0001
prefilter: 1,	actual: 0.0002
prefilter: 10,	actual: 0.001
prefilter: 400,	actual: 0.005
/projects/compbio/experiments/models.97/scripts2k/target2k: aweight_bits are 0.8, 0.7, 0.6, 0.5
/projects/compbio/experiments/models.97/scripts2k/target2k: db_size= 509169 reverse_diff= 4
/projects/compbio/experiments/models.97/scripts2k/target2k: blast_max_report= 20000
/projects/compbio/experiments/models.97/scripts2k/target2k: db=/projects/compbio/data/nrp/nr
/projects/compbio/experiments/models.97/scripts2k/target2k: aweight_method=1 aweight_exponent=10
/projects/compbio/experiments/models.97/scripts2k/target2k: force_seed=1 constraints=1
/projects/compbio/experiments/models.97/scripts2k/target2k: jump_in=0.2 jump_out=1 fimstrength=1 fimtrans=-1


@@@@ blast-prefilter -out prefilter -seed m0.a2m  -prefilter_thresholds 0.01,1,10,400  -db /projects/compbio/data/nrp/nr -blast_max_report 20000


@@@@ chgrp protein /projects/compbio/tmp/blast-prefilter-beta-12668
/projects/compbio/experiments/models.97/scripts2k/blast-prefilter: E-value thresholds used are
For /export/projects/compbio/tmp/target2k-beta-9448/prefilter_1.fa,  0.01
For /export/projects/compbio/tmp/target2k-beta-9448/prefilter_2.fa,  1
For /export/projects/compbio/tmp/target2k-beta-9448/prefilter_3.fa,  10
For /export/projects/compbio/tmp/target2k-beta-9448/prefilter_4.fa,  400

/projects/compbio/experiments/models.97/scripts2k/blast-prefilter: db=/projects/compbio/data/nrp/nr


@@@@ uniqueseq init -alignfile /export/projects/compbio/tmp/target2k-beta-9448/m0.a2m -a protein -a2mdots 0
SAM: uniqueseq v3.1b (February 24, 1999) compiled 04/18/00_11:44:50
Reading alignment file /export/projects/compbio/tmp/target2k-beta-9448/m0.a2m (1 sequences, 400 columns) as A2M alignment.
Writing sequence output to init.a2m.
No sequences have been droppd.


@@@@ /projects/compbio/bin/wu-blastp /projects/compbio/data/nrp/nr 1.fasta  E=400 V=20000 B=0 -gi > 1.fasta-blast.out
Searched 509169 sequences
# parsing wu-blastp output


@@@@ rm -f 1.fasta < /dev/null


@@@@ rm -f 1.fasta-blast.out < /dev/null
# Extracting hits in FASTA format from /projects/compbio/data/nrp/nr


@@@@ rm -rf /projects/compbio/tmp/blast-prefilter-beta-12668 < /dev/null


@@@@ modelfromalign unused -alignfile m0.a2m \
             -constraints_from_align 1 -constraints_out m0.cst
SAM: modelfromalign v3.1b (February 24, 1999) compiled 04/18/00_11:44:13
Reading alignment file m0.a2m (1 sequences, 400 columns) as A2M alignment.
# About to count sequences in m0.a2m
# About to count sequences in prefilter_1.fa


@@@@ modelfromalign tmp_1-a -alignfile m0.a2m \
		-insert /projects/compbio/lib/gap1.5.regularizer \
		-aweight_bits 0.8\
		-fimtrans -1\
    	-fimstrength 1\
        -ins_jump_conf 1 \
	-match_jump_conf 1 \
	-del_jump_conf 1 \
	-binary_output 1\
	-prior_library /projects/compbio/lib/recode3.20comp \
	-a2mdots 0 \
	-a protein \
        -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \
    	-aweight_method 1\
	-aweight_exponent 10 -constraints m0.cst -constraints_out tmp_1-a.cst
Reading parameter file /projects/compbio/lib/gap1.5.regularizer
/projects/compbio/lib/gap1.5.regularizer(1):  Reading REGULARIZER: gap1.5.  Weak regularizer, gaps average 1.5, matches average 10
SAM: modelfromalign v3.1b (February 24, 1999) compiled 04/18/00_11:44:13
Reading alignment file m0.a2m (1 sequences, 400 columns) as A2M alignment.


@@@@ hmmscore tmp_1-a -i tmp_1-a.mod -fimtrans -1\
    	-fimstrength 1\
        -ins_jump_conf 1 \
	-match_jump_conf 1 \
	-del_jump_conf 1 \
	-binary_output 1\
	-prior_library /projects/compbio/lib/recode3.20comp \
	-a2mdots 0 \
	-a protein \
        -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\
    	    -dpstyle 0 \
	    -subtract_null 4 -sort 2 \
	-db_size 509169 \
	-simple_threshold -26.3508756357805 -Emax 0.0001 \
    	-adpstyle 1 \
	-align_short 0	-mdEmax 0.0001\
	-select_score 4 \
	-select_seq 4 \
	 -select_mdalign 4 -select_md 4 -Motifcutoff 0.05 -db prefilter_1.fa -constraints tmp_1-a.cst -constraints_out tmp_1-a-md.cst
Reading parameter file tmp_1-a.mod
tmp_1-a.mod(23):  Reading MODEL --  Model from alignment file m0.a2m
SAM: hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -158.867828
Database has 17 sequences with 9985 residues.


@@@@ sortseq tmp_1-a-sort -alignfile tmp_1-a.mult \
    		-NLLfile tmp_1-a.mstat -a2mdots 0
SAM: sortseq v3.1b (February 24, 1999) compiled 04/18/00_11:44:38
Reading alignment file tmp_1-a.mult (6 sequences, 400 columns) as A2M alignment.
Reading scores from file tmp_1-a.mstat
Writing sequence output to tmp_1-a-sort.a2m.


@@@@ cat m0.a2m tmp_1-a-sort.a2m > tmp_1-a.train.seq


@@@@ cat m0.cst tmp_1-a-md.cst > tmp_1-a.train.cst
# About to count sequences in tmp_1-a.train.seq
# num_seqs=7 nll_thresh=-22.3508756357805 frac_id=0.999999999999989


@@@@ uniqueseq thinned_tmp -alignfile tmp_1-a.train.seq -a protein \
        -percent_id 0.999999999999989 -a2mdots 0
SAM: uniqueseq v3.1b (February 24, 1999) compiled 04/18/00_11:44:50
Reading alignment file tmp_1-a.train.seq (7 sequences, 400 columns) as A2M alignment.
Writing sequence output to thinned_tmp.a2m.
Dropping 1 (of 7) duplicate sequences with differing IDs
6 sequences left after dropping 1 of 7 sequences.


@@@@ modelfromalign junk_for_weights \
    		-alignfile tmp_1-a.train.seq \
		-aweight_bits 0.8\
    		-fimtrans -1\
    	-fimstrength 1\
        -ins_jump_conf 1 \
	-match_jump_conf 1 \
	-del_jump_conf 1 \
	-binary_output 1\
	-prior_library /projects/compbio/lib/recode3.20comp \
	-a2mdots 0 \
	-a protein \
        -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \
    	-aweight_method 1\
	-aweight_exponent 10
SAM: modelfromalign v3.1b (February 24, 1999) compiled 04/18/00_11:44:13
Reading alignment file tmp_1-a.train.seq (6 sequences, 400 columns) as A2M alignment.


@@@@ buildmodel tmp_1-b -insert tmp_1-a.mod\
	 -fimtrans -1\
    	-fimstrength 1\
        -ins_jump_conf 1 \
	-match_jump_conf 1 \
	-del_jump_conf 1 \
	-binary_output 1\
	-prior_library /projects/compbio/lib/recode3.20comp \
	-a2mdots 0 \
	-a protein \
        -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\
	    -modellength 0 \
	    -internal_weight 0 \
	    -anneal_length 2 \
	    -many_files 1 \
	    -Nseq 20000\
	    -nsurgery 0 \
	    -fracinsert 0.2 \
	    -cutinsert 0.25 -cutmatch 0.2 -initial_noise 0.0001 -anneal_noise 0.000001 \
	    	-internal_weight 0 \
		-train tmp_1-a.train.seq \
		-nmodels 1\
		-insert /projects/compbio/lib/gap1.5.regularizer -sequence_weights tmp_1-a.w -constraints tmp_1-a.train.cst
Reading parameter file tmp_1-a.mod
tmp_1-a.mod(23):  Reading MODEL --  Model from alignment file m0.a2m
Command line option(48): internal_weight has already been set. Using 0.
Reading parameter file /projects/compbio/lib/gap1.5.regularizer
/projects/compbio/lib/gap1.5.regularizer(1):  Reading REGULARIZER: gap1.5.  Weak regularizer, gaps average 1.5, matches average 10
SAM: buildmodel v3.1b (February 24, 1999) compiled 04/18/00_11:43:59
-1136.96  -141.15  -537.36 379.51  14 0 401 


@@@@ hmmscore tmp_1-b -i tmp_1-b.mod -fimtrans -1\
    	-fimstrength 1\
        -ins_jump_conf 1 \
	-match_jump_conf 1 \
	-del_jump_conf 1 \
	-binary_output 1\
	-prior_library /projects/compbio/lib/recode3.20comp \
	-a2mdots 0 \
	-a protein \
        -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\
    	    -dpstyle 0 \
	    -subtract_null 4 -sort 2 \
	-db_size 509169 \
	-db m0.a2m -db tmp_1-a.sel \
	-select_score 4 \
	-select_seq 4 \
	-simple_threshold -26.3508756357805 -Emax 0.0001 \
	-select_mdalign 4 -select_md 4 \
	-adpstyle 1 \
	-Motifcutoff 0.05 \
	-align_short 5	-mdEmax 0.0001 -constraints tmp_1-a.train.cst -constraints_out /export/projects/compbio/experiments/casp4/t101/T0101.t2k_1.cst
Reading parameter file tmp_1-b.mod
tmp_1-b.mod(20):  Reading MODEL --  Final model for run tmp_1-b
SAM: hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -591.253113
Database has 7 sequences with 3835 residues.


@@@@ cp -f tmp_1-b.mult /export/projects/compbio/experiments/casp4/t101/T0101.t2k_1.a2m
# About to count sequences in prefilter_2.fa


@@@@ modelfromalign tmp_2-a -alignfile /export/projects/compbio/experiments/casp4/t101/T0101.t2k_1.a2m \
		-insert /projects/compbio/lib/stiff-gap5.regularizer \
		-aweight_bits 0.7\
		-fimtrans -1\
    	-fimstrength 1\
        -ins_jump_conf 1 \
	-match_jump_conf 1 \
	-del_jump_conf 1 \
	-binary_output 1\
	-prior_library /projects/compbio/lib/recode3.20comp \
	-a2mdots 0 \
	-a protein \
        -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \
    	-aweight_method 1\
	-aweight_exponent 10 -constraints /export/projects/compbio/experiments/casp4/t101/T0101.t2k_1.cst -constraints_out tmp_2-a.cst
Reading parameter file /projects/compbio/lib/stiff-gap5.regularizer
/projects/compbio/lib/stiff-gap5.regularizer(1):  Reading REGULARIZER: gap5.  stiff regularizer, gaps averge 5, matches average 10
SAM: modelfromalign v3.1b (February 24, 1999) compiled 04/18/00_11:44:13
Reading alignment file /export/projects/compbio/experiments/casp4/t101/T0101.t2k_1.a2m (7 sequences, 400 columns) as A2M alignment.


@@@@ hmmscore tmp_2-a -i tmp_2-a.mod -fimtrans -1\
    	-fimstrength 1\
        -ins_jump_conf 1 \
	-match_jump_conf 1 \
	-del_jump_conf 1 \
	-binary_output 1\
	-prior_library /projects/compbio/lib/recode3.20comp \
	-a2mdots 0 \
	-a protein \
        -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\
    	    -dpstyle 0 \
	    -subtract_null 4 -sort 2 \
	-db_size 509169 \
	-simple_threshold -25.6577284550241 -Emax 0.0002 \
    	-adpstyle 1 \
	-align_short 0	-mdEmax 0.0002\
	-select_score 4 \
	-select_seq 4 \
	 -select_mdalign 4 -select_md 4 -Motifcutoff 0.05 -db prefilter_2.fa -constraints tmp_2-a.cst -constraints_out tmp_2-a-md.cst
Reading parameter file tmp_2-a.mod
tmp_2-a.mod(23):  Reading MODEL --  Model from alignment file /export/projects/compbio/experiments/casp4/t101/T0101.t2k_1.a2m
SAM: hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -88.276512
Database has 55 sequences with 43645 residues.


@@@@ sortseq tmp_2-a-sort -alignfile tmp_2-a.mult \
    		-NLLfile tmp_2-a.mstat -a2mdots 0
SAM: sortseq v3.1b (February 24, 1999) compiled 04/18/00_11:44:38
Reading alignment file tmp_2-a.mult (6 sequences, 400 columns) as A2M alignment.
Reading scores from file tmp_2-a.mstat
Writing sequence output to tmp_2-a-sort.a2m.


@@@@ cat m0.a2m tmp_2-a-sort.a2m > tmp_2-a.train.seq


@@@@ cat m0.cst tmp_2-a-md.cst > tmp_2-a.train.cst
# About to count sequences in tmp_2-a.train.seq
# num_seqs=7 nll_thresh=-21.6577284550241 frac_id=0.999999999999971


@@@@ uniqueseq thinned_tmp -alignfile tmp_2-a.train.seq -a protein \
        -percent_id 0.999999999999971 -a2mdots 0
SAM: uniqueseq v3.1b (February 24, 1999) compiled 04/18/00_11:44:50
Reading alignment file tmp_2-a.train.seq (7 sequences, 400 columns) as A2M alignment.
Writing sequence output to thinned_tmp.a2m.
Dropping 1 (of 7) duplicate sequences with differing IDs
6 sequences left after dropping 1 of 7 sequences.


@@@@ modelfromalign junk_for_weights \
    		-alignfile tmp_2-a.train.seq \
		-aweight_bits 0.7\
    		-fimtrans -1\
    	-fimstrength 1\
        -ins_jump_conf 1 \
	-match_jump_conf 1 \
	-del_jump_conf 1 \
	-binary_output 1\
	-prior_library /projects/compbio/lib/recode3.20comp \
	-a2mdots 0 \
	-a protein \
        -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \
    	-aweight_method 1\
	-aweight_exponent 10
SAM: modelfromalign v3.1b (February 24, 1999) compiled 04/18/00_11:44:13
Reading alignment file tmp_2-a.train.seq (6 sequences, 400 columns) as A2M alignment.


@@@@ buildmodel tmp_2-b -insert tmp_2-a.mod\
	 -fimtrans -1\
    	-fimstrength 1\
        -ins_jump_conf 1 \
	-match_jump_conf 1 \
	-del_jump_conf 1 \
	-binary_output 1\
	-prior_library /projects/compbio/lib/recode3.20comp \
	-a2mdots 0 \
	-a protein \
        -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\
	    -modellength 0 \
	    -internal_weight 0 \
	    -anneal_length 2 \
	    -many_files 1 \
	    -Nseq 20000\
	    -nsurgery 0 \
	    -fracinsert 0.2 \
	    -cutinsert 0.25 -cutmatch 0.2 -initial_noise 0.0001 -anneal_noise 0.000001 \
	    	-internal_weight 0 \
		-train tmp_2-a.train.seq \
		-nmodels 1\
		-insert /projects/compbio/lib/stiff-gap5.regularizer -sequence_weights tmp_2-a.w -constraints tmp_2-a.train.cst
Reading parameter file tmp_2-a.mod
tmp_2-a.mod(23):  Reading MODEL --  Model from alignment file /export/projects/compbio/experiments/casp4/t101/T0101.t2k_1.a2m
Command line option(48): internal_weight has already been set. Using 0.
Reading parameter file /projects/compbio/lib/stiff-gap5.regularizer
/projects/compbio/lib/stiff-gap5.regularizer(1):  Reading REGULARIZER: gap5.  stiff regularizer, gaps averge 5, matches average 10
SAM: buildmodel v3.1b (February 24, 1999) compiled 04/18/00_11:43:59
-1136.88  -298.33  -583.73 309.79  14 0 401 


@@@@ hmmscore tmp_2-b -i tmp_2-b.mod -fimtrans -1\
    	-fimstrength 1\
        -ins_jump_conf 1 \
	-match_jump_conf 1 \
	-del_jump_conf 1 \
	-binary_output 1\
	-prior_library /projects/compbio/lib/recode3.20comp \
	-a2mdots 0 \
	-a protein \
        -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\
    	    -dpstyle 0 \
	    -subtract_null 4 -sort 2 \
	-db_size 509169 \
	-db m0.a2m -db tmp_2-a.sel \
	-select_score 4 \
	-select_seq 4 \
	-simple_threshold -25.6577284550241 -Emax 0.0002 \
	-select_mdalign 4 -select_md 4 \
	-adpstyle 1 \
	-Motifcutoff 0.05 \
	-align_short 5	-mdEmax 0.0002 -constraints tmp_2-a.train.cst -constraints_out /export/projects/compbio/experiments/casp4/t101/T0101.t2k_2.cst
Reading parameter file tmp_2-b.mod
tmp_2-b.mod(20):  Reading MODEL --  Final model for run tmp_2-b
SAM: hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -482.481506
Database has 9 sequences with 4897 residues.


@@@@ cp -f tmp_2-b.mult /export/projects/compbio/experiments/casp4/t101/T0101.t2k_2.a2m
# About to count sequences in prefilter_3.fa


@@@@ modelfromalign tmp_3-a -alignfile /export/projects/compbio/experiments/casp4/t101/T0101.t2k_2.a2m \
		-insert /projects/compbio/lib/stiff-gap5.regularizer \
		-aweight_bits 0.6\
		-fimtrans -1\
    	-fimstrength 1\
        -ins_jump_conf 1 \
	-match_jump_conf 1 \
	-del_jump_conf 1 \
	-binary_output 1\
	-prior_library /projects/compbio/lib/recode3.20comp \
	-a2mdots 0 \
	-a protein \
        -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \
    	-aweight_method 1\
	-aweight_exponent 10 -constraints /export/projects/compbio/experiments/casp4/t101/T0101.t2k_2.cst -constraints_out tmp_3-a.cst
Reading parameter file /projects/compbio/lib/stiff-gap5.regularizer
/projects/compbio/lib/stiff-gap5.regularizer(1):  Reading REGULARIZER: gap5.  stiff regularizer, gaps averge 5, matches average 10
SAM: modelfromalign v3.1b (February 24, 1999) compiled 04/18/00_11:44:13
Reading alignment file /export/projects/compbio/experiments/casp4/t101/T0101.t2k_2.a2m (7 sequences, 400 columns) as A2M alignment.


@@@@ hmmscore tmp_3-a -i tmp_3-a.mod -fimtrans -1\
    	-fimstrength 1\
        -ins_jump_conf 1 \
	-match_jump_conf 1 \
	-del_jump_conf 1 \
	-binary_output 1\
	-prior_library /projects/compbio/lib/recode3.20comp \
	-a2mdots 0 \
	-a protein \
        -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\
    	    -dpstyle 0 \
	    -subtract_null 4 -sort 2 \
	-db_size 509169 \
	-simple_threshold -24.0482905410188 -Emax 0.001 \
    	-adpstyle 1 \
	-align_short 0	-mdEmax 0.001\
	-select_score 4 \
	-select_seq 4 \
	 -select_mdalign 4 -select_md 4 -Motifcutoff 0.05 -db prefilter_3.fa -constraints tmp_3-a.cst -constraints_out tmp_3-a-md.cst
Reading parameter file tmp_3-a.mod
tmp_3-a.mod(23):  Reading MODEL --  Model from alignment file /export/projects/compbio/experiments/casp4/t101/T0101.t2k_2.a2m
SAM: hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -57.385830
Database has 135 sequences with 97795 residues.


@@@@ sortseq tmp_3-a-sort -alignfile tmp_3-a.mult \
    		-NLLfile tmp_3-a.mstat -a2mdots 0
SAM: sortseq v3.1b (February 24, 1999) compiled 04/18/00_11:44:38
Reading alignment file tmp_3-a.mult (8 sequences, 400 columns) as A2M alignment.
Reading scores from file tmp_3-a.mstat
Writing sequence output to tmp_3-a-sort.a2m.


@@@@ cat m0.a2m tmp_3-a-sort.a2m > tmp_3-a.train.seq


@@@@ cat m0.cst tmp_3-a-md.cst > tmp_3-a.train.cst
# About to count sequences in tmp_3-a.train.seq
# num_seqs=9 nll_thresh=-20.0482905410188 frac_id=0.999999999830645


@@@@ uniqueseq thinned_tmp -alignfile tmp_3-a.train.seq -a protein \
        -percent_id 0.999999999830645 -a2mdots 0
SAM: uniqueseq v3.1b (February 24, 1999) compiled 04/18/00_11:44:50
Reading alignment file tmp_3-a.train.seq (9 sequences, 400 columns) as A2M alignment.
Writing sequence output to thinned_tmp.a2m.
Dropping 1 (of 9) duplicate sequences with differing IDs
8 sequences left after dropping 1 of 9 sequences.


@@@@ modelfromalign junk_for_weights \
    		-alignfile tmp_3-a.train.seq \
		-aweight_bits 0.6\
    		-fimtrans -1\
    	-fimstrength 1\
        -ins_jump_conf 1 \
	-match_jump_conf 1 \
	-del_jump_conf 1 \
	-binary_output 1\
	-prior_library /projects/compbio/lib/recode3.20comp \
	-a2mdots 0 \
	-a protein \
        -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \
    	-aweight_method 1\
	-aweight_exponent 10
SAM: modelfromalign v3.1b (February 24, 1999) compiled 04/18/00_11:44:13
Reading alignment file tmp_3-a.train.seq (8 sequences, 400 columns) as A2M alignment.


@@@@ buildmodel tmp_3-b -insert tmp_3-a.mod\
	 -fimtrans -1\
    	-fimstrength 1\
        -ins_jump_conf 1 \
	-match_jump_conf 1 \
	-del_jump_conf 1 \
	-binary_output 1\
	-prior_library /projects/compbio/lib/recode3.20comp \
	-a2mdots 0 \
	-a protein \
        -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\
	    -modellength 0 \
	    -internal_weight 0 \
	    -anneal_length 2 \
	    -many_files 1 \
	    -Nseq 20000\
	    -nsurgery 0 \
	    -fracinsert 0.2 \
	    -cutinsert 0.25 -cutmatch 0.2 -initial_noise 0.0001 -anneal_noise 0.000001 \
	    	-internal_weight 0 \
		-train tmp_3-a.train.seq \
		-nmodels 1\
		-insert /projects/compbio/lib/stiff-gap5.regularizer -sequence_weights tmp_3-a.w -constraints tmp_3-a.train.cst
Reading parameter file tmp_3-a.mod
tmp_3-a.mod(23):  Reading MODEL --  Model from alignment file /export/projects/compbio/experiments/casp4/t101/T0101.t2k_2.a2m
Command line option(48): internal_weight has already been set. Using 0.
Reading parameter file /projects/compbio/lib/stiff-gap5.regularizer
/projects/compbio/lib/stiff-gap5.regularizer(1):  Reading REGULARIZER: gap5.  stiff regularizer, gaps averge 5, matches average 10
SAM: buildmodel v3.1b (February 24, 1999) compiled 04/18/00_11:43:59
-1138.73  -31.67  -431.92 347.68  13 0 401 


@@@@ hmmscore tmp_3-b -i tmp_3-b.mod -fimtrans -1\
    	-fimstrength 1\
        -ins_jump_conf 1 \
	-match_jump_conf 1 \
	-del_jump_conf 1 \
	-binary_output 1\
	-prior_library /projects/compbio/lib/recode3.20comp \
	-a2mdots 0 \
	-a protein \
        -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\
    	    -dpstyle 0 \
	    -subtract_null 4 -sort 2 \
	-db_size 509169 \
	-db m0.a2m -db tmp_3-a.sel \
	-select_score 4 \
	-select_seq 4 \
	-simple_threshold -24.0482905410188 -Emax 0.001 \
	-select_mdalign 4 -select_md 4 \
	-adpstyle 1 \
	-Motifcutoff 0.05 \
	-align_short 5	-mdEmax 0.001 -constraints tmp_3-a.train.cst -constraints_out /export/projects/compbio/experiments/casp4/t101/T0101.t2k_3.cst
Reading parameter file tmp_3-b.mod
tmp_3-b.mod(20):  Reading MODEL --  Final model for run tmp_3-b
SAM: hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -369.807159
Database has 12 sequences with 6340 residues.


@@@@ cp -f tmp_3-b.mult /export/projects/compbio/experiments/casp4/t101/T0101.t2k_3.a2m
# About to count sequences in prefilter_4.fa


@@@@ modelfromalign tmp_4-a -alignfile /export/projects/compbio/experiments/casp4/t101/T0101.t2k_3.a2m \
		-insert /projects/compbio/lib/fssp-trained.regularizer \
		-aweight_bits 0.5\
		-fimtrans -1\
    	-fimstrength 1\
        -ins_jump_conf 1 \
	-match_jump_conf 1 \
	-del_jump_conf 1 \
	-binary_output 1\
	-prior_library /projects/compbio/lib/recode3.20comp \
	-a2mdots 0 \
	-a protein \
        -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \
    	-aweight_method 1\
	-aweight_exponent 10 -constraints /export/projects/compbio/experiments/casp4/t101/T0101.t2k_3.cst -constraints_out tmp_4-a.cst
Reading parameter file /projects/compbio/lib/fssp-trained.regularizer
/projects/compbio/lib/fssp-trained.regularizer(1):  Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP
SAM: modelfromalign v3.1b (February 24, 1999) compiled 04/18/00_11:44:13
Reading alignment file /export/projects/compbio/experiments/casp4/t101/T0101.t2k_3.a2m (9 sequences, 400 columns) as A2M alignment.


@@@@ hmmscore tmp_4-a -i tmp_4-a.mod -fimtrans -1\
    	-fimstrength 1\
        -ins_jump_conf 1 \
	-match_jump_conf 1 \
	-del_jump_conf 1 \
	-binary_output 1\
	-prior_library /projects/compbio/lib/recode3.20comp \
	-a2mdots 0 \
	-a protein \
        -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\
    	    -dpstyle 0 \
	    -subtract_null 4 -sort 2 \
	-db_size 509169 \
	-simple_threshold -22.4388526207288 -Emax 0.005 \
    	-adpstyle 1 \
	-align_short 0	-mdEmax 0.005\
	-select_score 4 \
	-select_seq 4 \
	 -select_mdalign 4 -select_md 4 -Motifcutoff 0.05 -db prefilter_4.fa -constraints tmp_4-a.cst -constraints_out tmp_4-a-md.cst
Reading parameter file tmp_4-a.mod
tmp_4-a.mod(23):  Reading MODEL --  Model from alignment file /export/projects/compbio/experiments/casp4/t101/T0101.t2k_3.a2m
SAM: hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -18.293762
Database has 859 sequences with 481916 residues.


@@@@ sortseq tmp_4-a-sort -alignfile tmp_4-a.mult \
    		-NLLfile tmp_4-a.mstat -a2mdots 0
SAM: sortseq v3.1b (February 24, 1999) compiled 04/18/00_11:44:38
Reading alignment file tmp_4-a.mult (13 sequences, 400 columns) as A2M alignment.
Reading scores from file tmp_4-a.mstat
Writing sequence output to tmp_4-a-sort.a2m.


@@@@ cat m0.a2m tmp_4-a-sort.a2m > tmp_4-a.train.seq


@@@@ cat m0.cst tmp_4-a-md.cst > tmp_4-a.train.cst
# About to count sequences in tmp_4-a.train.seq
# num_seqs=14 nll_thresh=-18.4388526207288 frac_id=0.999998475363401


@@@@ uniqueseq thinned_tmp -alignfile tmp_4-a.train.seq -a protein \
        -percent_id 0.999998475363401 -a2mdots 0
SAM: uniqueseq v3.1b (February 24, 1999) compiled 04/18/00_11:44:50
Reading alignment file tmp_4-a.train.seq (14 sequences, 400 columns) as A2M alignment.
Writing sequence output to thinned_tmp.a2m.
Dropping 1 (of 14) duplicate sequences with differing IDs
13 sequences left after dropping 1 of 14 sequences.


@@@@ modelfromalign junk_for_weights \
    		-alignfile tmp_4-a.train.seq \
		-aweight_bits 0.5\
    		-fimtrans -1\
    	-fimstrength 1\
        -ins_jump_conf 1 \
	-match_jump_conf 1 \
	-del_jump_conf 1 \
	-binary_output 1\
	-prior_library /projects/compbio/lib/recode3.20comp \
	-a2mdots 0 \
	-a protein \
        -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \
    	-aweight_method 1\
	-aweight_exponent 10
SAM: modelfromalign v3.1b (February 24, 1999) compiled 04/18/00_11:44:13
Reading alignment file tmp_4-a.train.seq (13 sequences, 400 columns) as A2M alignment.


@@@@ buildmodel tmp_4-b -insert tmp_4-a.mod\
	 -fimtrans -1\
    	-fimstrength 1\
        -ins_jump_conf 1 \
	-match_jump_conf 1 \
	-del_jump_conf 1 \
	-binary_output 1\
	-prior_library /projects/compbio/lib/recode3.20comp \
	-a2mdots 0 \
	-a protein \
        -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\
	    -modellength 0 \
	    -internal_weight 0 \
	    -anneal_length 2 \
	    -many_files 1 \
	    -Nseq 20000\
	    -nsurgery 0 \
	    -fracinsert 0.2 \
	    -cutinsert 0.25 -cutmatch 0.2 -initial_noise 0.0001 -anneal_noise 0.000001 \
	    	-internal_weight 0 \
		-train tmp_4-a.train.seq \
		-nmodels 1\
		-insert /projects/compbio/lib/fssp-trained.regularizer -sequence_weights tmp_4-a.w -constraints tmp_4-a.train.cst
Reading parameter file tmp_4-a.mod
tmp_4-a.mod(23):  Reading MODEL --  Model from alignment file /export/projects/compbio/experiments/casp4/t101/T0101.t2k_3.a2m
Command line option(48): internal_weight has already been set. Using 0.
Reading parameter file /projects/compbio/lib/fssp-trained.regularizer
/projects/compbio/lib/fssp-trained.regularizer(1):  Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP
SAM: buildmodel v3.1b (February 24, 1999) compiled 04/18/00_11:43:59
-1139.48  -11.09  -324.99 284.84  15 0 401 


@@@@ hmmscore tmp_4-b -i tmp_4-b.mod -fimtrans -1\
    	-fimstrength 1\
        -ins_jump_conf 1 \
	-match_jump_conf 1 \
	-del_jump_conf 1 \
	-binary_output 1\
	-prior_library /projects/compbio/lib/recode3.20comp \
	-a2mdots 0 \
	-a protein \
        -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\
    	    -dpstyle 0 \
	    -subtract_null 4 -sort 2 \
	-db_size 509169 \
	-db m0.a2m -db tmp_4-a.sel \
	-select_score 4 \
	-select_seq 4 \
	-simple_threshold -22.4388526207288 -Emax 0.005 \
	-select_mdalign 4 -select_md 4 \
	-adpstyle 1 \
	-Motifcutoff 0.05 \
	-align_short 5	-mdEmax 0.005 -constraints tmp_4-a.train.cst -constraints_out /export/projects/compbio/experiments/casp4/t101/T0101.t2k_4.cst
Reading parameter file tmp_4-b.mod
tmp_4-b.mod(20):  Reading MODEL --  Final model for run tmp_4-b
SAM: hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -312.597046
Database has 16 sequences with 9157 residues.


@@@@ cp -f tmp_4-b.mult /export/projects/compbio/experiments/casp4/t101/T0101.t2k_4.a2m


@@@@ modelfromalign tmp_5-a -alignfile /export/projects/compbio/experiments/casp4/t101/T0101.t2k_4.a2m \
		-insert /projects/compbio/lib/fssp-trained.regularizer \
		-aweight_bits 0.5\
		-fimtrans -1\
    	-fimstrength 1\
        -ins_jump_conf 1 \
	-match_jump_conf 1 \
	-del_jump_conf 1 \
	-binary_output 1\
	-prior_library /projects/compbio/lib/recode3.20comp \
	-a2mdots 0 \
	-a protein \
        -sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \
    	-aweight_method 1\
	-aweight_exponent 10 -constraints /export/projects/compbio/experiments/casp4/t101/T0101.t2k_4.cst -constraints_out tmp_5-a.cst
Reading parameter file /projects/compbio/lib/fssp-trained.regularizer
/projects/compbio/lib/fssp-trained.regularizer(1):  Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP
SAM: modelfromalign v3.1b (February 24, 1999) compiled 04/18/00_11:44:13
Reading alignment file /export/projects/compbio/experiments/casp4/t101/T0101.t2k_4.a2m (14 sequences, 400 columns) as A2M alignment.


@@@@ hmmscore tmp_5-a -i tmp_5-a.mod -fimtrans -1\
    	-fimstrength 1\
        -ins_jump_conf 1 \
	-match_jump_conf 1 \
	-del_jump_conf 1 \
	-binary_output 1\
	-prior_library /projects/compbio/lib/recode3.20comp \
	-a2mdots 0 \
	-a protein \
        -sw 2 -jump_in_prob 0.2 -jump_out_prob 1\
    	    -dpstyle 0 \
	    -subtract_null 4 -sort 2 \
	-db_size 509169 \
	-simple_threshold -22.4388526207288 -Emax 0.005 \
    	-adpstyle 5 \
	-align_short 0	-mdEmax 0.005\
	-select_score 4 \
	-select_seq 4 \
	 -select_mdalign 4 -select_md 4 -Motifcutoff 0.05 -db prefilter_4.fa -constraints tmp_5-a.cst -constraints_out tmp_5-a-md.cst
Reading parameter file tmp_5-a.mod
tmp_5-a.mod(23):  Reading MODEL --  Model from alignment file /export/projects/compbio/experiments/casp4/t101/T0101.t2k_4.a2m
SAM: hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -19.481041
Database has 859 sequences with 481916 residues.


@@@@ sortseq tmp_5-a-sort -alignfile tmp_5-a.mult \
    		-NLLfile tmp_5-a.mstat -a2mdots 0
SAM: sortseq v3.1b (February 24, 1999) compiled 04/18/00_11:44:38
Reading alignment file tmp_5-a.mult (12 sequences, 400 columns) as A2M alignment.
Reading scores from file tmp_5-a.mstat
Writing sequence output to tmp_5-a-sort.a2m.


@@@@ cat m0.a2m tmp_5-a-sort.a2m > tmp_5-a.train.seq


@@@@ cat m0.cst tmp_5-a-md.cst > tmp_5-a.train.cst


@@@@ cp tmp_5-a.train.seq /export/projects/compbio/experiments/casp4/t101/T0101.t2k.a2m


@@@@ cp tmp_5-a.train.cst /export/projects/compbio/experiments/casp4/t101/T0101.t2k.cst


@@@@ rm -rf /projects/compbio/tmp/target2k-beta-9448 < /dev/null
gzip -f T0101.t2k.a2m T0101.t2k_*.a2m
prettyalign T0101.t2k.a2m.gz -m8 -i -n -L3333 > T0101.t2k.pa
SAM: prettyalign v3.1b (February 24, 1999) compiled 04/18/00_11:44:15
gunzip -c T0101.t2k.a2m.gz > tmp.a2m
a2m2html -a2m_in tmp.a2m -retrieve > T0101.t2k.pa.html
SAM: /projects/compbio/bin/alpha/prettyalign v3.1b (February 24, 1999) compiled 04/18/00_11:44:15
rm tmp.a2m
echo ReadNeuralNet /projects/compbio/usr/karplus/predict-2nd/testing/networks/overrep-2500-IDaa13-5-9-7-10-5-10-11-ehl2-seeded4-stride-trained.net > tmp.script
echo ReadA2M T0101.t2k.a2m.gz >> tmp.script
echo PrintPrediction T0101.t2k.2d 3670-4530-6947 >> tmp.script
echo PrintPredictionFasta T0101.t2k.2d.seq >> tmp.script
echo PrintRDB T0101.t2k.2d.rdb >> tmp.script
predict-2nd < tmp.script
# command:# Neural network set to overrep-2500-IDaa13-5-9-7-10-5-10-11-ehl2-seeded4-stride-trained.net
# command:# Reading A2M format from T0101.t2k.a2m.gz
# Using SequenceWeight EntropyWeight(1.4, 10)
# Using regularizer /projects/compbio/lib/recode3.20comp for sequence weight regularizer.
# T0101.t2k.a2m with 13 sequences, total weight= 10.0589 avg weight= 0.773759 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.4 bits/position, saving 1.28683 bits.
Regularizing alignment for T0101.t2k.a2m.gz
# After reading T0101.t2k.a2m.gz, have 400 columns in 1 chains
# command:# Initializing Gain for FinalLayer
# Initializing Gain for ordering_layer
# Initializing Gain for SecondLayer
# Initializing Gain for FirstLayer
# Network initialization done
# Printing prediction to T0101.t2k.2d
# command:# Network initialization done
# Printing prediction  in FASTA format to T0101.t2k.2d.seq
# command:# Network initialization done
# Printing prediction to T0101.t2k.2d.rdb
# command:rm tmp.script
gunzip -f T0101.t2k.a2m.gz
/projects/compbio/usr/karplus/src/phytree/phytree -o -i -r flat T0101.t2k T0101.t2k.a2m /projects/compbio/lib/recode2.20comp
Prior library /projects/compbio/lib/recode2.20comp read.
Reading alignment file T0101.t2k.a2m (13 sequences) as A2M alignment.
Alignment T0101.t2k.a2m read.
Adding sequences:0 10 
One dot for every 10 merges:
.
Merges done.
CPU = user   0: 0:15    system   0: 0: 0
gzip -f T0101.t2k.a2m
gzip -f T0101.t2k_sorted.a2m
rm T0101.t2k.phytrace T0101.t2k.tree_weight
prettyalign T0101.t2k_sorted.a2m.gz -m8 -i -n -L3333 > T0101.t2k_sorted.pa
SAM: prettyalign v3.1b (February 24, 1999) compiled 04/18/00_11:44:15
/projects/compbio/usr/karplus/src/phytree/dg T0101.t2k.tree
/projects/compbio/usr/karplus/src/phytree/dtree T0101.t2k.tree
make[1]: Leaving directory `/export/projects/compbio/experiments/casp4/t101'
/projects/compbio/experiments/models.97/scripts99/score-target -alignment T0101.t2k.a2m.gz -build w0.5 \
	-db /projects/compbio/data/pdb/all-protein \
	-Emax 40.0 \
	-viterbi 0 -sw_score 2 \
	-output T0101.t2k-w0.5-pdb.rdb
PATH=.:/projects/compbio/experiments/models.97/scripts99:/projects/compbio/bin:/projects/compbio/bin/alpha:/projects/compbio/bin/hmmscripts:/projects/compbio/bin/scripts:/sbin:/usr/sbin:/bin:/usr/bin:/usr/local/gnu/bin:/usr/local/share/request/bin:/usr/local/bin


@@@@ mkdir /projects/compbio/tmp/score-target-14554


@@@@ mkdir /projects/compbio/tmp/score-target-14554/for-scorescript


@@@@ /projects/compbio/experiments/models.97/scripts99/score-mods-vs-seqs.pl -root_tmp /projects/compbio/tmp/score-target-14554/for-scorescript  -a2msfile /projects/compbio/tmp/score-target-14554/score-target.a2m \
        -buildscript /projects/compbio/bin/scripts/w0.5 -seqfile /projects/compbio/data/pdb/all-protein -Emax 40.0 -viterbi 0 \
        -sw_score 2 -output /projects/compbio/tmp/score-target-14554/score-target.op


@@@@ chgrp protein /projects/compbio/tmp/score-target-14554/for-scorescript/split-tmp


@@@@ chgrp protein /projects/compbio/tmp/score-target-14554/for-scorescript/split-tmp


@@@@ /projects/compbio/bin/scripts/w0.5 /export/projects/compbio/experiments/casp4/t101/T0101.t2k.a2m.gz /projects/compbio/tmp/score-target-14554/for-scorescript/split-tmp/beta-28802/T0101.t2k.mod
Reading /projects/compbio/bin/scripts/sam-t99.conf

@@@@ chgrp protein /projects/compbio/tmp/tmp-build-weighted-model-beta-5279


@@@@ uniqueseq /projects/compbio/tmp/tmp-build-weighted-model-beta-5279/tmp -alignfile /export/projects/compbio/experiments/casp4/t101/T0101.t2k.a2m.gz \
    		-a protein -percent_id 0.8
SAM: uniqueseq v3.1b (February 24, 1999) compiled 04/18/00_11:44:50
Reading alignment file /export/projects/compbio/experiments/casp4/t101/T0101.t2k.a2m.gz (13 sequences, 400 columns) as A2M alignment.
Writing sequence output to /projects/compbio/tmp/tmp-build-weighted-model-beta-5279/tmp.a2m.
Dropping 1 (of 13) duplicate sequences with differing IDs
Dropping 4 (of 13) sequences with > 80.0% id
8 sequences left after dropping 5 of 13 sequences.


@@@@ modelfromalign /projects/compbio/tmp/tmp-build-weighted-model-beta-5279/tmp -alignfile /projects/compbio/tmp/tmp-build-weighted-model-beta-5279/tmp.a2m \
		-insert /projects/compbio/lib/fssp-trained.regularizer \
		-ins_jump_conf 1 \
		-match_jump_conf 1 \
		-del_jump_conf 1 \
		-prior_library /projects/compbio/lib/recode3.20comp \
		-binary_output 1  -a protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10
Reading parameter file /projects/compbio/lib/fssp-trained.regularizer
/projects/compbio/lib/fssp-trained.regularizer(1):  Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP
SAM: modelfromalign v3.1b (February 24, 1999) compiled 04/18/00_11:44:13
Reading alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-5279/tmp.a2m (8 sequences, 400 columns) as A2M alignment.


@@@@ cp -f /projects/compbio/tmp/tmp-build-weighted-model-beta-5279/tmp.mod /projects/compbio/tmp/score-target-14554/for-scorescript/split-tmp/beta-28802/T0101.t2k.mod


@@@@ rm -rf /projects/compbio/tmp/tmp-build-weighted-model-beta-5279 </dev/null
Reading /projects/compbio/bin/scripts/sam-t99.conf

@@@@ hmmscore /projects/compbio/tmp/score-target-14554/for-scorescript/split-tmp/beta-28802/tmp28802 -i /projects/compbio/tmp/score-target-14554/for-scorescript/split-tmp/beta-28802/T0101.t2k.mod -db /projects/compbio/data/pdb/all-protein -SW_score 2 -viterbi 0 -select_score 4 -Emax 40.0
Reading parameter file /projects/compbio/tmp/score-target-14554/for-scorescript/split-tmp/beta-28802/T0101.t2k.mod
/projects/compbio/tmp/score-target-14554/for-scorescript/split-tmp/beta-28802/T0101.t2k.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-5279/tmp.a2m
SAM: hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.......................
Average NLL-Simple NULL score:        -10.892010
Database has 22487 sequences with 4854320 residues.


@@@@ mv /projects/compbio/tmp/score-target-14554/for-scorescript/split-tmp/beta-28802/op_temp28802 /projects/compbio/tmp/score-target-14554/score-target.op


@@@@  rm -rf /projects/compbio/tmp/score-target-14554/for-scorescript/split-tmp/beta-28802 < /dev/null


@@@@ rm -rf /projects/compbio/tmp/score-target-14554
/projects/compbio/bin/scripts/score-lib-t99 \
-targetseq T0101.seq \
-db "PDB and SCOP domains" \
	-evalue 40.0 \
	-hitsout T0101-t99.rdb
Process ID: 12084
Command line args:
targetseq: T0101.seq
targeta2m: 
hitsoutfile: T0101-t99.rdb
evalue: 40.0
db_option_str: PDB and SCOP domains
    db_ids_file: /projects/compbio/experiments/models.97/indexes/t99.ids
    db_seqfiles_list_ref: /projects/compbio/data/pdb/all-protein:/projects/compbio/experiments/test-set/fold-recognition-test/chothia-test/domains/domains.seqs
    db_aligndirs_list_ref: /projects/compbio/experiments/models.97/pdb:/projects/compbio4/experiments/models.97/domains
entering get_template_model_for_db_search: template_id: 2aaa_1
id: 2aaa_1   alignment found: /projects/compbio4/experiments/models.97/domains/2a/2aaa_1/nostruct-align/2aaa_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2a/2aaa_1/nostruct-align/2aaa_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2a/2aaa_1/nostruct-align/2aaa_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13259/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.870605
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1abrB_1
id: 1abrB_1   alignment found: /projects/compbio4/experiments/models.97/domains/1a/1abrB_1/nostruct-align/1abrB_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1abrB_1/nostruct-align/1abrB_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1a/1abrB_1/nostruct-align/1abrB_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8127/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.904541
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1adn
id: 1adn   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1adn/nostruct-align/1adn.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1adn/nostruct-align/1adn.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1adn/nostruct-align/1adn.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5701/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.195557
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1adr
id: 1adr   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1adr/nostruct-align/1adr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1adr/nostruct-align/1adr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1adr/nostruct-align/1adr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20841/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.900635
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aizA
id: 1aizA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aizA/nostruct-align/1aizA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aizA/nostruct-align/1aizA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aizA/nostruct-align/1aizA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16671/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.977539
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1afp
id: 1afp   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1afp/nostruct-align/1afp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1afp/nostruct-align/1afp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1afp/nostruct-align/1afp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1412/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.027588
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ans
id: 1ans   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ans/nostruct-align/1ans.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ans/nostruct-align/1ans.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ans/nostruct-align/1ans.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27342/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.270630
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1acp
id: 1acp   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1acp/nostruct-align/1acp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1acp/nostruct-align/1acp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1acp/nostruct-align/1acp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27722/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.485596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aca
id: 1aca   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aca/nostruct-align/1aca.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aca/nostruct-align/1aca.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aca/nostruct-align/1aca.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30976/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.453613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1abrB_2
id: 1abrB_2   alignment found: /projects/compbio4/experiments/models.97/domains/1a/1abrB_2/nostruct-align/1abrB_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1abrB_2/nostruct-align/1abrB_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1a/1abrB_2/nostruct-align/1abrB_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6930/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.514526
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 193l
id: 193l   alignment found: /projects/compbio/experiments/models.97/pdb/19/193l/nostruct-align/193l.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/19/193l/nostruct-align/193l.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/19/193l/nostruct-align/193l.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29135/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.490601
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1acf
id: 1acf   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1acf/nostruct-align/1acf.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1acf/nostruct-align/1acf.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1acf/nostruct-align/1acf.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24789/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.704590
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1add
id: 1add   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1add/nostruct-align/1add.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1add/nostruct-align/1add.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1add/nostruct-align/1add.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26170/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.441528
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 119l
id: 119l   alignment found: /projects/compbio/experiments/models.97/pdb/11/119l/nostruct-align/119l.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/11/119l/nostruct-align/119l.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/11/119l/nostruct-align/119l.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file ./tmp/tmp-build-weighted-model-titanic-28907/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.635620
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1apa
id: 1apa   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apa/nostruct-align/1apa.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apa/nostruct-align/1apa.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1apa/nostruct-align/1apa.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file ./tmp/tmp-build-weighted-model-titanic-29216/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.970581
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1apo
id: 1apo   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apo/nostruct-align/1apo.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apo/nostruct-align/1apo.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1apo/nostruct-align/1apo.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31402/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.077637
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aab
id: 1aab   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aab/nostruct-align/1aab.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aab/nostruct-align/1aab.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aab/nostruct-align/1aab.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24719/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.952515
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ard
id: 1ard   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ard/nostruct-align/1ard.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ard/nostruct-align/1ard.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ard/nostruct-align/1ard.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16080/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.894653
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aep
id: 1aep   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aep/nostruct-align/1aep.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aep/nostruct-align/1aep.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aep/nostruct-align/1aep.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file ./tmp/tmp-build-weighted-model-titanic-22676/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.837646
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aps
id: 1aps   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aps/nostruct-align/1aps.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aps/nostruct-align/1aps.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aps/nostruct-align/1aps.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-26746/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.674561
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aba
id: 1aba   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aba/nostruct-align/1aba.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aba/nostruct-align/1aba.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aba/nostruct-align/1aba.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14430/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.900635
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aky
id: 1aky   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aky/nostruct-align/1aky.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aky/nostruct-align/1aky.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aky/nostruct-align/1aky.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file ./tmp/tmp-build-weighted-model-titanic-29691/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.416626
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aco_1
id: 1aco_1   alignment found: /projects/compbio4/experiments/models.97/domains/1a/1aco_1/nostruct-align/1aco_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1aco_1/nostruct-align/1aco_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1a/1aco_1/nostruct-align/1aco_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31243/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.668701
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aaf
id: 1aaf   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aaf/nostruct-align/1aaf.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aaf/nostruct-align/1aaf.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aaf/nostruct-align/1aaf.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-9090/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.710571
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gd1O_1
id: 1gd1O_1   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gd1O_1/nostruct-align/1gd1O_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gd1O_1/nostruct-align/1gd1O_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1gd1O_1/nostruct-align/1gd1O_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6794/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.033691
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1oacA_3
id: 1oacA_3   alignment found: /projects/compbio4/experiments/models.97/domains/1o/1oacA_3/nostruct-align/1oacA_3.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1o/1oacA_3/nostruct-align/1oacA_3.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1o/1oacA_3/nostruct-align/1oacA_3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9589/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.983643
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1amp
id: 1amp   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amp/nostruct-align/1amp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amp/nostruct-align/1amp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1amp/nostruct-align/1amp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1908/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.505615
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ash
id: 1ash   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ash/nostruct-align/1ash.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ash/nostruct-align/1ash.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ash/nostruct-align/1ash.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8232/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.578613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aaj
id: 1aaj   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aaj/nostruct-align/1aaj.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aaj/nostruct-align/1aaj.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aaj/nostruct-align/1aaj.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-3219/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.209595
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bco_1
id: 1bco_1   alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bco_1/nostruct-align/1bco_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bco_1/nostruct-align/1bco_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1b/1bco_1/nostruct-align/1bco_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16972/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.774658
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ast
id: 1ast   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ast/nostruct-align/1ast.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ast/nostruct-align/1ast.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ast/nostruct-align/1ast.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19215/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.659668
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1yua_2
id: 1yua_2   alignment found: /projects/compbio4/experiments/models.97/domains/1y/1yua_2/nostruct-align/1yua_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1y/1yua_2/nostruct-align/1yua_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1y/1yua_2/nostruct-align/1yua_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22366/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.912598
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1arb
id: 1arb   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1arb/nostruct-align/1arb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1arb/nostruct-align/1arb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1arb/nostruct-align/1arb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25982/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -20.204590
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1admA
id: 1admA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1admA/nostruct-align/1admA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1admA/nostruct-align/1admA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1admA/nostruct-align/1admA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-25908/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.185547
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gal_2
id: 1gal_2   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gal_2/nostruct-align/1gal_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gal_2/nostruct-align/1gal_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1gal_2/nostruct-align/1gal_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11377/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.561646
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1adeA
id: 1adeA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1adeA/nostruct-align/1adeA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1adeA/nostruct-align/1adeA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1adeA/nostruct-align/1adeA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-729/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.129639
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1oacA_2
id: 1oacA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1o/1oacA_2/nostruct-align/1oacA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1o/1oacA_2/nostruct-align/1oacA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1o/1oacA_2/nostruct-align/1oacA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24668/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.670654
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1asu
id: 1asu   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1asu/nostruct-align/1asu.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1asu/nostruct-align/1asu.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1asu/nostruct-align/1asu.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7184/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.483643
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bbo_2
id: 1bbo_2   alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bbo_2/nostruct-align/1bbo_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bbo_2/nostruct-align/1bbo_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1b/1bbo_2/nostruct-align/1bbo_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31489/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.480591
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 9api_1a1
id: 9api_1a1   alignment found: /projects/compbio4/experiments/models.97/domains/9a/9api_1a1/nostruct-align/9api_1a1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/9a/9api_1a1/nostruct-align/9api_1a1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/9a/9api_1a1/nostruct-align/9api_1a1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19423/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.192627
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1yua_1
id: 1yua_1   alignment found: /projects/compbio4/experiments/models.97/domains/1y/1yua_1/nostruct-align/1yua_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1y/1yua_1/nostruct-align/1yua_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1y/1yua_1/nostruct-align/1yua_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-548/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.540649
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1abrA
id: 1abrA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1abrA/nostruct-align/1abrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1abrA/nostruct-align/1abrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1abrA/nostruct-align/1abrA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15213/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.571533
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 6rlx_1a1
id: 6rlx_1a1   alignment found: /projects/compbio4/experiments/models.97/domains/6r/6rlx_1a1/nostruct-align/6rlx_1a1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/6r/6rlx_1a1/nostruct-align/6rlx_1a1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/6r/6rlx_1a1/nostruct-align/6rlx_1a1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11290/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.408569
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bcfA
id: 1bcfA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bcfA/nostruct-align/1bcfA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bcfA/nostruct-align/1bcfA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bcfA/nostruct-align/1bcfA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4825/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.695557
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bds
id: 1bds   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bds/nostruct-align/1bds.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bds/nostruct-align/1bds.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bds/nostruct-align/1bds.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16370/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.988647
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bfmA
id: 1bfmA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bfmA/nostruct-align/1bfmA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bfmA/nostruct-align/1bfmA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bfmA/nostruct-align/1bfmA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20922/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.854614
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bam
id: 1bam   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bam/nostruct-align/1bam.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bam/nostruct-align/1bam.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bam/nostruct-align/1bam.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10736/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.680542
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bal
id: 1bal   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bal/nostruct-align/1bal.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bal/nostruct-align/1bal.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bal/nostruct-align/1bal.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21134/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.804688
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bgh
id: 1bgh   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bgh/nostruct-align/1bgh.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bgh/nostruct-align/1bgh.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bgh/nostruct-align/1bgh.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30048/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.103638
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bbhA
id: 1bbhA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bbhA/nostruct-align/1bbhA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bbhA/nostruct-align/1bbhA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bbhA/nostruct-align/1bbhA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8051/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.857544
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bhp
id: 1bhp   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhp/nostruct-align/1bhp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhp/nostruct-align/1bhp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bhp/nostruct-align/1bhp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4771/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.373535
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bet
id: 1bet   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bet/nostruct-align/1bet.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bet/nostruct-align/1bet.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bet/nostruct-align/1bet.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1568/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.391602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1atx
id: 1atx   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1atx/nostruct-align/1atx.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1atx/nostruct-align/1atx.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1atx/nostruct-align/1atx.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8668/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.412598
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bnb
id: 1bnb   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bnb/nostruct-align/1bnb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bnb/nostruct-align/1bnb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bnb/nostruct-align/1bnb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2485/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.948608
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bovA
id: 1bovA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bovA/nostruct-align/1bovA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bovA/nostruct-align/1bovA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bovA/nostruct-align/1bovA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1391/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.113647
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bip
id: 1bip   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bip/nostruct-align/1bip.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bip/nostruct-align/1bip.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bip/nostruct-align/1bip.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5326/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.635620
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aak
id: 1aak   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aak/nostruct-align/1aak.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aak/nostruct-align/1aak.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aak/nostruct-align/1aak.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8716/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.139526
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bgc
id: 1bgc   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bgc/nostruct-align/1bgc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bgc/nostruct-align/1bgc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bgc/nostruct-align/1bgc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26182/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.966675
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1babA
id: 1babA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1babA/nostruct-align/1babA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1babA/nostruct-align/1babA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1babA/nostruct-align/1babA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15943/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.458496
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1brd
id: 1brd   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brd/nostruct-align/1brd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brd/nostruct-align/1brd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1brd/nostruct-align/1brd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16005/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.424683
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bn21
id: 1bn21   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bn21/nostruct-align/1bn21.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bn21/nostruct-align/1bn21.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bn21/nostruct-align/1bn21.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16102/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.338623
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bmv1
id: 1bmv1   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bmv1/nostruct-align/1bmv1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bmv1/nostruct-align/1bmv1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bmv1/nostruct-align/1bmv1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23883/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.937622
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bbpA
id: 1bbpA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bbpA/nostruct-align/1bbpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bbpA/nostruct-align/1bbpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bbpA/nostruct-align/1bbpA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14215/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.908569
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1btn
id: 1btn   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1btn/nostruct-align/1btn.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1btn/nostruct-align/1btn.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1btn/nostruct-align/1btn.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7971/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.856689
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bbt3
id: 1bbt3   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bbt3/nostruct-align/1bbt3.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bbt3/nostruct-align/1bbt3.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bbt3/nostruct-align/1bbt3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1523/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.806519
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bw3
id: 1bw3   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bw3/nostruct-align/1bw3.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bw3/nostruct-align/1bw3.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bw3/nostruct-align/1bw3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10313/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.425659
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bmv2
id: 1bmv2   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bmv2/nostruct-align/1bmv2.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bmv2/nostruct-align/1bmv2.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bmv2/nostruct-align/1bmv2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29332/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.769531
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1brlA
id: 1brlA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brlA/nostruct-align/1brlA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brlA/nostruct-align/1brlA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1brlA/nostruct-align/1brlA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27872/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.859619
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1brsD
id: 1brsD   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brsD/nostruct-align/1brsD.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brsD/nostruct-align/1brsD.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1brsD/nostruct-align/1brsD.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16147/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.523682
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bunB
id: 1bunB   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bunB/nostruct-align/1bunB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bunB/nostruct-align/1bunB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bunB/nostruct-align/1bunB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9123/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.849609
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c5a
id: 1c5a   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c5a/nostruct-align/1c5a.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c5a/nostruct-align/1c5a.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c5a/nostruct-align/1c5a.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-2823/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.551636
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cc5
id: 1cc5   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cc5/nostruct-align/1cc5.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cc5/nostruct-align/1cc5.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cc5/nostruct-align/1cc5.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5459/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.560669
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cbp
id: 1cbp   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cbp/nostruct-align/1cbp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cbp/nostruct-align/1cbp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cbp/nostruct-align/1cbp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18202/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.926514
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bpi
id: 1bpi   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bpi/nostruct-align/1bpi.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bpi/nostruct-align/1bpi.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bpi/nostruct-align/1bpi.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10080/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.879517
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cbh
id: 1cbh   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cbh/nostruct-align/1cbh.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cbh/nostruct-align/1cbh.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cbh/nostruct-align/1cbh.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18023/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.609619
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cdcB
id: 1cdcB   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdcB/nostruct-align/1cdcB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdcB/nostruct-align/1cdcB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cdcB/nostruct-align/1cdcB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22765/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.261597
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gal_1
id: 1gal_1   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gal_1/nostruct-align/1gal_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gal_1/nostruct-align/1gal_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1gal_1/nostruct-align/1gal_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18984/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.228516
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1art
id: 1art   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1art/nostruct-align/1art.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1art/nostruct-align/1art.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1art/nostruct-align/1art.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4132/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.487549
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1atlA
id: 1atlA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1atlA/nostruct-align/1atlA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1atlA/nostruct-align/1atlA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1atlA/nostruct-align/1atlA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30665/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.594604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 5rubA_2
id: 5rubA_2   alignment found: /projects/compbio4/experiments/models.97/domains/5r/5rubA_2/nostruct-align/5rubA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/5r/5rubA_2/nostruct-align/5rubA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/5r/5rubA_2/nostruct-align/5rubA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-433/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.049561
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cgo
id: 1cgo   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cgo/nostruct-align/1cgo.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cgo/nostruct-align/1cgo.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cgo/nostruct-align/1cgo.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31018/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.658569
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1chl
id: 1chl   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1chl/nostruct-align/1chl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1chl/nostruct-align/1chl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1chl/nostruct-align/1chl.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16478/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.280518
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1chd
id: 1chd   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1chd/nostruct-align/1chd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1chd/nostruct-align/1chd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1chd/nostruct-align/1chd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2692/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.610596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1brnL
id: 1brnL   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brnL/nostruct-align/1brnL.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brnL/nostruct-align/1brnL.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1brnL/nostruct-align/1brnL.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-487/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.150635
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1chc
id: 1chc   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1chc/nostruct-align/1chc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1chc/nostruct-align/1chc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1chc/nostruct-align/1chc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19220/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.413574
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cmbA
id: 1cmbA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cmbA/nostruct-align/1cmbA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cmbA/nostruct-align/1cmbA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cmbA/nostruct-align/1cmbA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28897/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.545654
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cnr
id: 1cnr   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cnr/nostruct-align/1cnr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cnr/nostruct-align/1cnr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cnr/nostruct-align/1cnr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31724/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.422607
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1btl
id: 1btl   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1btl/nostruct-align/1btl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1btl/nostruct-align/1btl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1btl/nostruct-align/1btl.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12816/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.166504
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1coaI
id: 1coaI   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1coaI/nostruct-align/1coaI.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1coaI/nostruct-align/1coaI.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1coaI/nostruct-align/1coaI.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20216/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.077637
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1brlB
id: 1brlB   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brlB/nostruct-align/1brlB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brlB/nostruct-align/1brlB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1brlB/nostruct-align/1brlB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4215/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.666626
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cdq
id: 1cdq   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdq/nostruct-align/1cdq.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdq/nostruct-align/1cdq.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cdq/nostruct-align/1cdq.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9093/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.252563
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1coo
id: 1coo   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1coo/nostruct-align/1coo.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1coo/nostruct-align/1coo.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1coo/nostruct-align/1coo.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12238/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.883545
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1copD
id: 1copD   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1copD/nostruct-align/1copD.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1copD/nostruct-align/1copD.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1copD/nostruct-align/1copD.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22343/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.887573
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cpcA
id: 1cpcA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cpcA/nostruct-align/1cpcA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cpcA/nostruct-align/1cpcA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cpcA/nostruct-align/1cpcA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8245/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.682617
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ata
id: 1ata   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ata/nostruct-align/1ata.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ata/nostruct-align/1ata.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ata/nostruct-align/1ata.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18154/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.818604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1celA
id: 1celA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1celA/nostruct-align/1celA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1celA/nostruct-align/1celA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1celA/nostruct-align/1celA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2441/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.217651
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ckaA
id: 1ckaA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ckaA/nostruct-align/1ckaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ckaA/nostruct-align/1ckaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1ckaA/nostruct-align/1ckaA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26720/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.250488
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1oacA_1
id: 1oacA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1o/1oacA_1/nostruct-align/1oacA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1o/1oacA_1/nostruct-align/1oacA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1o/1oacA_1/nostruct-align/1oacA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11734/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.351563
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1byb
id: 1byb   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1byb/nostruct-align/1byb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1byb/nostruct-align/1byb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1byb/nostruct-align/1byb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22858/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.540649
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bbo_1
id: 1bbo_1   alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bbo_1/nostruct-align/1bbo_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bbo_1/nostruct-align/1bbo_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1b/1bbo_1/nostruct-align/1bbo_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15944/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.351685
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cae
id: 1cae   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cae/nostruct-align/1cae.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cae/nostruct-align/1cae.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cae/nostruct-align/1cae.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-23584/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.909546
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ytbA_2
id: 1ytbA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1y/1ytbA_2/nostruct-align/1ytbA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1y/1ytbA_2/nostruct-align/1ytbA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1y/1ytbA_2/nostruct-align/1ytbA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29111/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.924561
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fnb_2
id: 1fnb_2   alignment found: /projects/compbio4/experiments/models.97/domains/1f/1fnb_2/nostruct-align/1fnb_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1f/1fnb_2/nostruct-align/1fnb_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1f/1fnb_2/nostruct-align/1fnb_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31999/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.341553
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nif_2
id: 1nif_2   alignment found: /projects/compbio4/experiments/models.97/domains/1n/1nif_2/nostruct-align/1nif_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1n/1nif_2/nostruct-align/1nif_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1n/1nif_2/nostruct-align/1nif_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30110/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.799561
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cseI
id: 1cseI   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cseI/nostruct-align/1cseI.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cseI/nostruct-align/1cseI.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cseI/nostruct-align/1cseI.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7982/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.011597
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1csmA
id: 1csmA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1csmA/nostruct-align/1csmA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1csmA/nostruct-align/1csmA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1csmA/nostruct-align/1csmA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22790/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.064575
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cskA
id: 1cskA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cskA/nostruct-align/1cskA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cskA/nostruct-align/1cskA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cskA/nostruct-align/1cskA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-24476/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.350586
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cwpA
id: 1cwpA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cwpA/nostruct-align/1cwpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cwpA/nostruct-align/1cwpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cwpA/nostruct-align/1cwpA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28663/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.144531
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aco_2
id: 1aco_2   alignment found: /projects/compbio4/experiments/models.97/domains/1a/1aco_2/nostruct-align/1aco_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1aco_2/nostruct-align/1aco_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1a/1aco_2/nostruct-align/1aco_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19094/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.690552
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cus
id: 1cus   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cus/nostruct-align/1cus.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cus/nostruct-align/1cus.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cus/nostruct-align/1cus.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7235/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.594604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ctf
id: 1ctf   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ctf/nostruct-align/1ctf.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ctf/nostruct-align/1ctf.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1ctf/nostruct-align/1ctf.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14236/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.784546
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cyi
id: 1cyi   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cyi/nostruct-align/1cyi.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cyi/nostruct-align/1cyi.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cyi/nostruct-align/1cyi.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6451/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.041626
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1amg_1
id: 1amg_1   alignment found: /projects/compbio4/experiments/models.97/domains/1a/1amg_1/nostruct-align/1amg_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1amg_1/nostruct-align/1amg_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1a/1amg_1/nostruct-align/1amg_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13304/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.657593
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dchA
id: 1dchA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dchA/nostruct-align/1dchA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dchA/nostruct-align/1dchA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dchA/nostruct-align/1dchA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21341/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.168579
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1daaA
id: 1daaA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1daaA/nostruct-align/1daaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1daaA/nostruct-align/1daaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1daaA/nostruct-align/1daaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6315/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.307617
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1deaA
id: 1deaA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1deaA/nostruct-align/1deaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1deaA/nostruct-align/1deaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1deaA/nostruct-align/1deaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5850/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.095581
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aru
id: 1aru   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aru/nostruct-align/1aru.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aru/nostruct-align/1aru.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aru/nostruct-align/1aru.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32250/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.818604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1colA
id: 1colA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1colA/nostruct-align/1colA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1colA/nostruct-align/1colA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1colA/nostruct-align/1colA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20869/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.002686
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dec
id: 1dec   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dec/nostruct-align/1dec.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dec/nostruct-align/1dec.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dec/nostruct-align/1dec.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14285/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.349609
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cpn
id: 1cpn   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cpn/nostruct-align/1cpn.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cpn/nostruct-align/1cpn.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cpn/nostruct-align/1cpn.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24682/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.801636
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1asyA_2
id: 1asyA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1a/1asyA_2/nostruct-align/1asyA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1asyA_2/nostruct-align/1asyA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1a/1asyA_2/nostruct-align/1asyA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30619/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.147583
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ytbA_1
id: 1ytbA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1y/1ytbA_1/nostruct-align/1ytbA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1y/1ytbA_1/nostruct-align/1ytbA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1y/1ytbA_1/nostruct-align/1ytbA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2988/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.805542
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bbt1
id: 1bbt1   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bbt1/nostruct-align/1bbt1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bbt1/nostruct-align/1bbt1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bbt1/nostruct-align/1bbt1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13468/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.456543
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dmaA
id: 1dmaA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dmaA/nostruct-align/1dmaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dmaA/nostruct-align/1dmaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dmaA/nostruct-align/1dmaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13945/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.518555
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dme
id: 1dme   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dme/nostruct-align/1dme.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dme/nostruct-align/1dme.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dme/nostruct-align/1dme.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17079/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.834595
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cyx
id: 1cyx   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cyx/nostruct-align/1cyx.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cyx/nostruct-align/1cyx.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cyx/nostruct-align/1cyx.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21772/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.509644
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dctA
id: 1dctA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dctA/nostruct-align/1dctA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dctA/nostruct-align/1dctA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dctA/nostruct-align/1dctA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31146/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.016602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fnb_1
id: 1fnb_1   alignment found: /projects/compbio4/experiments/models.97/domains/1f/1fnb_1/nostruct-align/1fnb_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1f/1fnb_1/nostruct-align/1fnb_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1f/1fnb_1/nostruct-align/1fnb_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11219/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.830566
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dfnA
id: 1dfnA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dfnA/nostruct-align/1dfnA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dfnA/nostruct-align/1dfnA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dfnA/nostruct-align/1dfnA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28265/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.764648
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dupA
id: 1dupA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dupA/nostruct-align/1dupA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dupA/nostruct-align/1dupA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dupA/nostruct-align/1dupA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31315/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.652588
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dvh
id: 1dvh   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dvh/nostruct-align/1dvh.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dvh/nostruct-align/1dvh.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dvh/nostruct-align/1dvh.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17182/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.102661
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cbg
id: 1cbg   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cbg/nostruct-align/1cbg.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cbg/nostruct-align/1cbg.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cbg/nostruct-align/1cbg.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5977/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.860596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dmc
id: 1dmc   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dmc/nostruct-align/1dmc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dmc/nostruct-align/1dmc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dmc/nostruct-align/1dmc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32496/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.667603
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dtx
id: 1dtx   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dtx/nostruct-align/1dtx.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dtx/nostruct-align/1dtx.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dtx/nostruct-align/1dtx.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21184/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.885620
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dhr
id: 1dhr   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dhr/nostruct-align/1dhr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dhr/nostruct-align/1dhr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dhr/nostruct-align/1dhr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3644/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.077637
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cec
id: 1cec   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cec/nostruct-align/1cec.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cec/nostruct-align/1cec.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cec/nostruct-align/1cec.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31869/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.086548
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nif_1
id: 1nif_1   alignment found: /projects/compbio4/experiments/models.97/domains/1n/1nif_1/nostruct-align/1nif_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1n/1nif_1/nostruct-align/1nif_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1n/1nif_1/nostruct-align/1nif_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4725/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.472656
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dynA
id: 1dynA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dynA/nostruct-align/1dynA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dynA/nostruct-align/1dynA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dynA/nostruct-align/1dynA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8602/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.112671
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dts
id: 1dts   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dts/nostruct-align/1dts.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dts/nostruct-align/1dts.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dts/nostruct-align/1dts.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21739/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.574585
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1asyA_1
id: 1asyA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1a/1asyA_1/nostruct-align/1asyA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1asyA_1/nostruct-align/1asyA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1a/1asyA_1/nostruct-align/1asyA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4662/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.264648
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cpcB
id: 1cpcB   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cpcB/nostruct-align/1cpcB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cpcB/nostruct-align/1cpcB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cpcB/nostruct-align/1cpcB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28938/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.820679
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 5rubA_1
id: 5rubA_1   alignment found: /projects/compbio4/experiments/models.97/domains/5r/5rubA_1/nostruct-align/5rubA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/5r/5rubA_1/nostruct-align/5rubA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/5r/5rubA_1/nostruct-align/5rubA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4716/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.714600
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ego
id: 1ego   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ego/nostruct-align/1ego.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ego/nostruct-align/1ego.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1ego/nostruct-align/1ego.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4294/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.766602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ecmA
id: 1ecmA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ecmA/nostruct-align/1ecmA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ecmA/nostruct-align/1ecmA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1ecmA/nostruct-align/1ecmA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24209/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.090698
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cseE
id: 1cseE   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cseE/nostruct-align/1cseE.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cseE/nostruct-align/1cseE.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cseE/nostruct-align/1cseE.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9337/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -15.786621
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4gcr_2
id: 4gcr_2   alignment found: /projects/compbio4/experiments/models.97/domains/4g/4gcr_2/nostruct-align/4gcr_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/4g/4gcr_2/nostruct-align/4gcr_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/4g/4gcr_2/nostruct-align/4gcr_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8188/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.173584
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1csh
id: 1csh   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1csh/nostruct-align/1csh.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1csh/nostruct-align/1csh.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1csh/nostruct-align/1csh.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24820/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.678589
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1xrb_3
id: 1xrb_3   alignment found: /projects/compbio4/experiments/models.97/domains/1x/1xrb_3/nostruct-align/1xrb_3.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1x/1xrb_3/nostruct-align/1xrb_3.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1x/1xrb_3/nostruct-align/1xrb_3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18098/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.304688
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fcdC_2
id: 1fcdC_2   alignment found: /projects/compbio4/experiments/models.97/domains/1f/1fcdC_2/nostruct-align/1fcdC_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1f/1fcdC_2/nostruct-align/1fcdC_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1f/1fcdC_2/nostruct-align/1fcdC_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4503/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.487671
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4gcr_1
id: 4gcr_1   alignment found: /projects/compbio4/experiments/models.97/domains/4g/4gcr_1/nostruct-align/4gcr_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/4g/4gcr_1/nostruct-align/4gcr_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/4g/4gcr_1/nostruct-align/4gcr_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6141/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.397583
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1eng
id: 1eng   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eng/nostruct-align/1eng.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eng/nostruct-align/1eng.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1eng/nostruct-align/1eng.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10410/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.605713
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1eca
id: 1eca   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eca/nostruct-align/1eca.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eca/nostruct-align/1eca.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1eca/nostruct-align/1eca.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23933/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.353638
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1egf
id: 1egf   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1egf/nostruct-align/1egf.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1egf/nostruct-align/1egf.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1egf/nostruct-align/1egf.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6420/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.364624
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nhp_3
id: 1nhp_3   alignment found: /projects/compbio4/experiments/models.97/domains/1n/1nhp_3/nostruct-align/1nhp_3.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1n/1nhp_3/nostruct-align/1nhp_3.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1n/1nhp_3/nostruct-align/1nhp_3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20517/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.582642
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1eit
id: 1eit   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eit/nostruct-align/1eit.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eit/nostruct-align/1eit.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1eit/nostruct-align/1eit.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1651/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.141602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ecl
id: 1ecl   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ecl/nostruct-align/1ecl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ecl/nostruct-align/1ecl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1ecl/nostruct-align/1ecl.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15537/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.317627
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1epbA
id: 1epbA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1epbA/nostruct-align/1epbA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1epbA/nostruct-align/1epbA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1epbA/nostruct-align/1epbA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-25976/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.616577
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1edt
id: 1edt   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1edt/nostruct-align/1edt.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1edt/nostruct-align/1edt.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1edt/nostruct-align/1edt.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12210/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.336670
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dhx
id: 1dhx   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dhx/nostruct-align/1dhx.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dhx/nostruct-align/1dhx.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dhx/nostruct-align/1dhx.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2758/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.221558
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ede
id: 1ede   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ede/nostruct-align/1ede.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ede/nostruct-align/1ede.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1ede/nostruct-align/1ede.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28414/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.457642
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1erl
id: 1erl   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1erl/nostruct-align/1erl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1erl/nostruct-align/1erl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1erl/nostruct-align/1erl.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9847/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.373657
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1erd
id: 1erd   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1erd/nostruct-align/1erd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1erd/nostruct-align/1erd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1erd/nostruct-align/1erd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19566/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.644653
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1eriA
id: 1eriA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eriA/nostruct-align/1eriA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eriA/nostruct-align/1eriA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1eriA/nostruct-align/1eriA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7349/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.312622
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ehs
id: 1ehs   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ehs/nostruct-align/1ehs.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ehs/nostruct-align/1ehs.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1ehs/nostruct-align/1ehs.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4129/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.708618
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aozA_3
id: 1aozA_3   alignment found: /projects/compbio4/experiments/models.97/domains/1a/1aozA_3/nostruct-align/1aozA_3.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1aozA_3/nostruct-align/1aozA_3.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1a/1aozA_3/nostruct-align/1aozA_3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-779/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.245605
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1draA
id: 1draA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1draA/nostruct-align/1draA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1draA/nostruct-align/1draA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1draA/nostruct-align/1draA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20136/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.268555
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1erp
id: 1erp   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1erp/nostruct-align/1erp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1erp/nostruct-align/1erp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1erp/nostruct-align/1erp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23631/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.246582
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1xrb_2
id: 1xrb_2   alignment found: /projects/compbio4/experiments/models.97/domains/1x/1xrb_2/nostruct-align/1xrb_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1x/1xrb_2/nostruct-align/1xrb_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1x/1xrb_2/nostruct-align/1xrb_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30282/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.302612
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fcdC_1
id: 1fcdC_1   alignment found: /projects/compbio4/experiments/models.97/domains/1f/1fcdC_1/nostruct-align/1fcdC_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1f/1fcdC_1/nostruct-align/1fcdC_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1f/1fcdC_1/nostruct-align/1fcdC_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26242/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.147583
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1amg_2
id: 1amg_2   alignment found: /projects/compbio4/experiments/models.97/domains/1a/1amg_2/nostruct-align/1amg_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1amg_2/nostruct-align/1amg_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1a/1amg_2/nostruct-align/1amg_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22758/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.562622
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nhp_2
id: 1nhp_2   alignment found: /projects/compbio4/experiments/models.97/domains/1n/1nhp_2/nostruct-align/1nhp_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1n/1nhp_2/nostruct-align/1nhp_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1n/1nhp_2/nostruct-align/1nhp_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2293/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.646606
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1amy_1
id: 1amy_1   alignment found: /projects/compbio4/experiments/models.97/domains/1a/1amy_1/nostruct-align/1amy_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1amy_1/nostruct-align/1amy_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1a/1amy_1/nostruct-align/1amy_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24652/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.186646
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fc2C
id: 1fc2C   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fc2C/nostruct-align/1fc2C.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fc2C/nostruct-align/1fc2C.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fc2C/nostruct-align/1fc2C.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16586/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.261597
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1eta1
id: 1eta1   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eta1/nostruct-align/1eta1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eta1/nostruct-align/1eta1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1eta1/nostruct-align/1eta1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20766/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.866577
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3rubL_2
id: 3rubL_2   alignment found: /projects/compbio4/experiments/models.97/domains/3r/3rubL_2/nostruct-align/3rubL_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/3r/3rubL_2/nostruct-align/3rubL_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/3r/3rubL_2/nostruct-align/3rubL_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24243/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.608643
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fca
id: 1fca   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fca/nostruct-align/1fca.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fca/nostruct-align/1fca.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fca/nostruct-align/1fca.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6742/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.250610
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1exg
id: 1exg   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1exg/nostruct-align/1exg.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1exg/nostruct-align/1exg.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1exg/nostruct-align/1exg.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28695/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.342651
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fd2
id: 1fd2   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fd2/nostruct-align/1fd2.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fd2/nostruct-align/1fd2.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fd2/nostruct-align/1fd2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3131/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.394653
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fipA
id: 1fipA   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fipA/nostruct-align/1fipA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fipA/nostruct-align/1fipA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fipA/nostruct-align/1fipA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24095/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.151611
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aozA_2
id: 1aozA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1a/1aozA_2/nostruct-align/1aozA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1aozA_2/nostruct-align/1aozA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1a/1aozA_2/nostruct-align/1aozA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9900/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.969604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1xrb_1
id: 1xrb_1   alignment found: /projects/compbio4/experiments/models.97/domains/1x/1xrb_1/nostruct-align/1xrb_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1x/1xrb_1/nostruct-align/1xrb_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1x/1xrb_1/nostruct-align/1xrb_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19832/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.392700
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fcdA_3
id: 1fcdA_3   alignment found: /projects/compbio4/experiments/models.97/domains/1f/1fcdA_3/nostruct-align/1fcdA_3.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1f/1fcdA_3/nostruct-align/1fcdA_3.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1f/1fcdA_3/nostruct-align/1fcdA_3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16814/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.217651
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fkd
id: 1fkd   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fkd/nostruct-align/1fkd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fkd/nostruct-align/1fkd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fkd/nostruct-align/1fkd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23169/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.262573
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fliA
id: 1fliA   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fliA/nostruct-align/1fliA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fliA/nostruct-align/1fliA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fliA/nostruct-align/1fliA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11092/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.439575
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1flp
id: 1flp   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1flp/nostruct-align/1flp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1flp/nostruct-align/1flp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1flp/nostruct-align/1flp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13562/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.012573
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bnh
id: 1bnh   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bnh/nostruct-align/1bnh.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bnh/nostruct-align/1bnh.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bnh/nostruct-align/1bnh.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25448/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.990601
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fna
id: 1fna   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fna/nostruct-align/1fna.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fna/nostruct-align/1fna.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fna/nostruct-align/1fna.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11909/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.940552
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fosE
id: 1fosE   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fosE/nostruct-align/1fosE.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fosE/nostruct-align/1fosE.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fosE/nostruct-align/1fosE.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13579/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.357666
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1enh
id: 1enh   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1enh/nostruct-align/1enh.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1enh/nostruct-align/1enh.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1enh/nostruct-align/1enh.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18241/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.717529
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gatA
id: 1gatA   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gatA/nostruct-align/1gatA.t99.a2m.gz
ScoreLibT99::make_wt_model: model file older than alignment: building /projects/compbio/experiments/models.97/pdb/1g/1gatA/nostruct-align/1gatA.t99-w0.5.mod from file /projects/compbio/experiments/models.97/pdb/1g/1gatA/nostruct-align/1gatA.t99.a2m.gz
Reading /projects/compbio/bin/scripts/sam-t99.conf

@@@@ chgrp protein /projects/compbio/tmp/tmp-build-weighted-model-beta-26553


@@@@ uniqueseq /projects/compbio/tmp/tmp-build-weighted-model-beta-26553/tmp -alignfile /projects/compbio/experiments/models.97/pdb/1g/1gatA/nostruct-align/1gatA.t99.a2m.gz \
    		-a protein -percent_id 0.8
SAM: uniqueseq v3.1b (February 24, 1999) compiled 04/18/00_11:44:50
Reading alignment file /projects/compbio/experiments/models.97/pdb/1g/1gatA/nostruct-align/1gatA.t99.a2m.gz (228 sequences, 60 columns) as A2M alignment.
Writing sequence output to /projects/compbio/tmp/tmp-build-weighted-model-beta-26553/tmp.a2m.
Dropping 38 (of 228) duplicate sequences with differing IDs
Dropping 135 (of 228) sequences with > 80.0% id
55 sequences left after dropping 173 of 228 sequences.


@@@@ modelfromalign /projects/compbio/tmp/tmp-build-weighted-model-beta-26553/tmp -alignfile /projects/compbio/tmp/tmp-build-weighted-model-beta-26553/tmp.a2m \
		-insert /projects/compbio/lib/fssp-trained.regularizer \
		-ins_jump_conf 1 \
		-match_jump_conf 1 \
		-del_jump_conf 1 \
		-prior_library /projects/compbio/lib/recode3.20comp \
		-binary_output 1  -a protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10
Reading parameter file /projects/compbio/lib/fssp-trained.regularizer
/projects/compbio/lib/fssp-trained.regularizer(1):  Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP
SAM: modelfromalign v3.1b (February 24, 1999) compiled 04/18/00_11:44:13
Reading alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-26553/tmp.a2m (55 sequences, 60 columns) as A2M alignment.


@@@@ cp -f /projects/compbio/tmp/tmp-build-weighted-model-beta-26553/tmp.mod /projects/compbio/experiments/models.97/pdb/1g/1gatA/nostruct-align/1gatA.t99-w0.5.mod


@@@@ rm -rf /projects/compbio/tmp/tmp-build-weighted-model-beta-26553 </dev/null
Reading /projects/compbio/bin/scripts/sam-t99.confReading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gatA/nostruct-align/1gatA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gatA/nostruct-align/1gatA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-26553/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.826660
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fxrA
id: 1fxrA   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fxrA/nostruct-align/1fxrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fxrA/nostruct-align/1fxrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fxrA/nostruct-align/1fxrA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27933/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.814575
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1frd
id: 1frd   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1frd/nostruct-align/1frd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1frd/nostruct-align/1frd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1frd/nostruct-align/1frd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31807/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.851685
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nhp_1
id: 1nhp_1   alignment found: /projects/compbio4/experiments/models.97/domains/1n/1nhp_1/nostruct-align/1nhp_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1n/1nhp_1/nostruct-align/1nhp_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1n/1nhp_1/nostruct-align/1nhp_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20855/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.353638
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fivA
id: 1fivA   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fivA/nostruct-align/1fivA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fivA/nostruct-align/1fivA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fivA/nostruct-align/1fivA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24575/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.282593
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dppA
id: 1dppA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dppA/nostruct-align/1dppA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dppA/nostruct-align/1dppA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dppA/nostruct-align/1dppA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18299/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.314697
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gbs
id: 1gbs   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gbs/nostruct-align/1gbs.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gbs/nostruct-align/1gbs.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gbs/nostruct-align/1gbs.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5417/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.792603
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1garA
id: 1garA   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1garA/nostruct-align/1garA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1garA/nostruct-align/1garA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1garA/nostruct-align/1garA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19801/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.122559
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aozA_1
id: 1aozA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1a/1aozA_1/nostruct-align/1aozA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1aozA_1/nostruct-align/1aozA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1a/1aozA_1/nostruct-align/1aozA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16410/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.029663
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fosF
id: 1fosF   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fosF/nostruct-align/1fosF.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fosF/nostruct-align/1fosF.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fosF/nostruct-align/1fosF.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29502/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.378540
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1csn
id: 1csn   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1csn/nostruct-align/1csn.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1csn/nostruct-align/1csn.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1csn/nostruct-align/1csn.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21490/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.474609
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1esc
id: 1esc   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1esc/nostruct-align/1esc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1esc/nostruct-align/1esc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1esc/nostruct-align/1esc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4790/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.836670
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gmpA
id: 1gmpA   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gmpA/nostruct-align/1gmpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gmpA/nostruct-align/1gmpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gmpA/nostruct-align/1gmpA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10632/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.324585
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gca
id: 1gca   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gca/nostruct-align/1gca.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gca/nostruct-align/1gca.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gca/nostruct-align/1gca.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23956/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.699585
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gp1A
id: 1gp1A   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gp1A/nostruct-align/1gp1A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gp1A/nostruct-align/1gp1A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gp1A/nostruct-align/1gp1A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6718/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.636597
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ftt
id: 1ftt   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1ftt/nostruct-align/1ftt.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1ftt/nostruct-align/1ftt.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1ftt/nostruct-align/1ftt.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11203/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.856689
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1glaF
id: 1glaF   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1glaF/nostruct-align/1glaF.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1glaF/nostruct-align/1glaF.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1glaF/nostruct-align/1glaF.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12133/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.839600
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gmfA
id: 1gmfA   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gmfA/nostruct-align/1gmfA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gmfA/nostruct-align/1gmfA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gmfA/nostruct-align/1gmfA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-24047/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.694580
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gtqA
id: 1gtqA   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gtqA/nostruct-align/1gtqA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gtqA/nostruct-align/1gtqA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gtqA/nostruct-align/1gtqA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18328/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.200684
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gpc
id: 1gpc   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gpc/nostruct-align/1gpc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gpc/nostruct-align/1gpc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gpc/nostruct-align/1gpc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12060/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.129639
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gps
id: 1gps   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gps/nostruct-align/1gps.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gps/nostruct-align/1gps.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gps/nostruct-align/1gps.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6088/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.427612
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fps
id: 1fps   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fps/nostruct-align/1fps.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fps/nostruct-align/1fps.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fps/nostruct-align/1fps.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11868/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.423584
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gpr
id: 1gpr   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gpr/nostruct-align/1gpr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gpr/nostruct-align/1gpr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gpr/nostruct-align/1gpr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12938/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.812622
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hcnA
id: 1hcnA   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hcnA/nostruct-align/1hcnA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hcnA/nostruct-align/1hcnA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hcnA/nostruct-align/1hcnA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9647/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.600586
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hcd
id: 1hcd   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hcd/nostruct-align/1hcd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hcd/nostruct-align/1hcd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hcd/nostruct-align/1hcd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-590/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.519653
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1eps
id: 1eps   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eps/nostruct-align/1eps.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eps/nostruct-align/1eps.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1eps/nostruct-align/1eps.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30107/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.569580
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hcnB
id: 1hcnB   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hcnB/nostruct-align/1hcnB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hcnB/nostruct-align/1hcnB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hcnB/nostruct-align/1hcnB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8311/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.369629
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hcgB
id: 1hcgB   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hcgB/nostruct-align/1hcgB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hcgB/nostruct-align/1hcgB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hcgB/nostruct-align/1hcgB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13189/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.495605
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hcrA
id: 1hcrA   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hcrA/nostruct-align/1hcrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hcrA/nostruct-align/1hcrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hcrA/nostruct-align/1hcrA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16334/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.220581
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gky
id: 1gky   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gky/nostruct-align/1gky.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gky/nostruct-align/1gky.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gky/nostruct-align/1gky.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26439/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.177612
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1amy_2
id: 1amy_2   alignment found: /projects/compbio4/experiments/models.97/domains/1a/1amy_2/nostruct-align/1amy_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1amy_2/nostruct-align/1amy_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1a/1amy_2/nostruct-align/1amy_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12341/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.373535
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hcc
id: 1hcc   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hcc/nostruct-align/1hcc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hcc/nostruct-align/1hcc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hcc/nostruct-align/1hcc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26057/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.056641
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1glm
id: 1glm   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1glm/nostruct-align/1glm.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1glm/nostruct-align/1glm.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1glm/nostruct-align/1glm.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9925/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.516602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hbp
id: 1hbp   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hbp/nostruct-align/1hbp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hbp/nostruct-align/1hbp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hbp/nostruct-align/1hbp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18611/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.746704
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1eaf
id: 1eaf   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eaf/nostruct-align/1eaf.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eaf/nostruct-align/1eaf.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1eaf/nostruct-align/1eaf.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28150/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.616577
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hbg
id: 1hbg   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hbg/nostruct-align/1hbg.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hbg/nostruct-align/1hbg.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hbg/nostruct-align/1hbg.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26954/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.911621
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hfc
id: 1hfc   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hfc/nostruct-align/1hfc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hfc/nostruct-align/1hfc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hfc/nostruct-align/1hfc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20040/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.703613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1eny
id: 1eny   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eny/nostruct-align/1eny.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eny/nostruct-align/1eny.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1eny/nostruct-align/1eny.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9615/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.024658
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gcb
id: 1gcb   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gcb/nostruct-align/1gcb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gcb/nostruct-align/1gcb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gcb/nostruct-align/1gcb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12613/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.918579
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3rubL_1
id: 3rubL_1   alignment found: /projects/compbio4/experiments/models.97/domains/3r/3rubL_1/nostruct-align/3rubL_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/3r/3rubL_1/nostruct-align/3rubL_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/3r/3rubL_1/nostruct-align/3rubL_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26336/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.655640
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1wht_1a1
id: 1wht_1a1   alignment found: /projects/compbio4/experiments/models.97/domains/1w/1wht_1a1/nostruct-align/1wht_1a1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1w/1wht_1a1/nostruct-align/1wht_1a1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1w/1wht_1a1/nostruct-align/1wht_1a1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30521/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.356689
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3pmgA_4
id: 3pmgA_4   alignment found: /projects/compbio4/experiments/models.97/domains/3p/3pmgA_4/nostruct-align/3pmgA_4.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/3p/3pmgA_4/nostruct-align/3pmgA_4.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/3p/3pmgA_4/nostruct-align/3pmgA_4.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7628/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.534668
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fcdA_2
id: 1fcdA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1f/1fcdA_2/nostruct-align/1fcdA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1f/1fcdA_2/nostruct-align/1fcdA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1f/1fcdA_2/nostruct-align/1fcdA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10296/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.539673
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3pmgA_3
id: 3pmgA_3   alignment found: /projects/compbio4/experiments/models.97/domains/3p/3pmgA_3/nostruct-align/3pmgA_3.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/3p/3pmgA_3/nostruct-align/3pmgA_3.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/3p/3pmgA_3/nostruct-align/3pmgA_3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17890/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.995605
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aorA_1
id: 1aorA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1a/1aorA_1/nostruct-align/1aorA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1aorA_1/nostruct-align/1aorA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1a/1aorA_1/nostruct-align/1aorA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20749/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.050659
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ncfA_3
id: 1ncfA_3   alignment found: /projects/compbio4/experiments/models.97/domains/1n/1ncfA_3/nostruct-align/1ncfA_3.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1n/1ncfA_3/nostruct-align/1ncfA_3.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1n/1ncfA_3/nostruct-align/1ncfA_3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22187/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.486572
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hmcA
id: 1hmcA   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hmcA/nostruct-align/1hmcA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hmcA/nostruct-align/1hmcA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hmcA/nostruct-align/1hmcA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5553/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.026611
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3pmgA_2
id: 3pmgA_2   alignment found: /projects/compbio4/experiments/models.97/domains/3p/3pmgA_2/nostruct-align/3pmgA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/3p/3pmgA_2/nostruct-align/3pmgA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/3p/3pmgA_2/nostruct-align/3pmgA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3370/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.514648
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hmpA
id: 1hmpA   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hmpA/nostruct-align/1hmpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hmpA/nostruct-align/1hmpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hmpA/nostruct-align/1hmpA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-24360/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.929565
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fbaA
id: 1fbaA   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fbaA/nostruct-align/1fbaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fbaA/nostruct-align/1fbaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fbaA/nostruct-align/1fbaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18643/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.903564
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hnr
id: 1hnr   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hnr/nostruct-align/1hnr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hnr/nostruct-align/1hnr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hnr/nostruct-align/1hnr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11144/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.426514
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hfi
id: 1hfi   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hfi/nostruct-align/1hfi.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hfi/nostruct-align/1hfi.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hfi/nostruct-align/1hfi.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20636/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.971680
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hcqA
id: 1hcqA   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hcqA/nostruct-align/1hcqA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hcqA/nostruct-align/1hcqA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hcqA/nostruct-align/1hcqA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8167/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.581543
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3pmgA_1
id: 3pmgA_1   alignment found: /projects/compbio4/experiments/models.97/domains/3p/3pmgA_1/nostruct-align/3pmgA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/3p/3pmgA_1/nostruct-align/3pmgA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/3p/3pmgA_1/nostruct-align/3pmgA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6975/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.078613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hms
id: 1hms   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hms/nostruct-align/1hms.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hms/nostruct-align/1hms.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hms/nostruct-align/1hms.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-27231/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.370605
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ghr
id: 1ghr   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1ghr/nostruct-align/1ghr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1ghr/nostruct-align/1ghr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1ghr/nostruct-align/1ghr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-240/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.758667
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hjrA
id: 1hjrA   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hjrA/nostruct-align/1hjrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hjrA/nostruct-align/1hjrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hjrA/nostruct-align/1hjrA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4320/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.156616
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hdcA
id: 1hdcA   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hdcA/nostruct-align/1hdcA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hdcA/nostruct-align/1hdcA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hdcA/nostruct-align/1hdcA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31069/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.439575
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3ins_1a1
id: 3ins_1a1   alignment found: /projects/compbio4/experiments/models.97/domains/3i/3ins_1a1/nostruct-align/3ins_1a1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/3i/3ins_1a1/nostruct-align/3ins_1a1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/3i/3ins_1a1/nostruct-align/3ins_1a1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4305/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.917603
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bco_2
id: 1bco_2   alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bco_2/nostruct-align/1bco_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bco_2/nostruct-align/1bco_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1b/1bco_2/nostruct-align/1bco_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23235/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.251587
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hma
id: 1hma   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hma/nostruct-align/1hma.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hma/nostruct-align/1hma.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hma/nostruct-align/1hma.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13804/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.935669
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bdmA_1
id: 1bdmA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bdmA_1/nostruct-align/1bdmA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bdmA_1/nostruct-align/1bdmA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1b/1bdmA_1/nostruct-align/1bdmA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23881/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.228638
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3hhrB_2
id: 3hhrB_2   alignment found: /projects/compbio4/experiments/models.97/domains/3h/3hhrB_2/nostruct-align/3hhrB_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/3h/3hhrB_2/nostruct-align/3hhrB_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/3h/3hhrB_2/nostruct-align/3hhrB_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21085/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.872559
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1wgtA_4
id: 1wgtA_4   alignment found: /projects/compbio4/experiments/models.97/domains/1w/1wgtA_4/nostruct-align/1wgtA_4.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1w/1wgtA_4/nostruct-align/1wgtA_4.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1w/1wgtA_4/nostruct-align/1wgtA_4.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30998/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.496582
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3hhrB_1
id: 3hhrB_1   alignment found: /projects/compbio4/experiments/models.97/domains/3h/3hhrB_1/nostruct-align/3hhrB_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/3h/3hhrB_1/nostruct-align/3hhrB_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/3h/3hhrB_1/nostruct-align/3hhrB_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2595/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.826538
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hmy
id: 1hmy   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hmy/nostruct-align/1hmy.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hmy/nostruct-align/1hmy.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hmy/nostruct-align/1hmy.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21224/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.253662
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bdmA_2
id: 1bdmA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bdmA_2/nostruct-align/1bdmA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bdmA_2/nostruct-align/1bdmA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1b/1bdmA_2/nostruct-align/1bdmA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3581/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.018555
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3dpa_2
id: 3dpa_2   alignment found: /projects/compbio4/experiments/models.97/domains/3d/3dpa_2/nostruct-align/3dpa_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/3d/3dpa_2/nostruct-align/3dpa_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/3d/3dpa_2/nostruct-align/3dpa_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6883/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.711548
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bglA_1
id: 1bglA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bglA_1/nostruct-align/1bglA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bglA_1/nostruct-align/1bglA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1b/1bglA_1/nostruct-align/1bglA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26958/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.343628
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3dpa_1
id: 3dpa_1   alignment found: /projects/compbio4/experiments/models.97/domains/3d/3dpa_1/nostruct-align/3dpa_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/3d/3dpa_1/nostruct-align/3dpa_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/3d/3dpa_1/nostruct-align/3dpa_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25792/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.329590
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bglA_2
id: 1bglA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bglA_2/nostruct-align/1bglA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bglA_2/nostruct-align/1bglA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1b/1bglA_2/nostruct-align/1bglA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15593/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.828491
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3cd4_2
id: 3cd4_2   alignment found: /projects/compbio4/experiments/models.97/domains/3c/3cd4_2/nostruct-align/3cd4_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/3c/3cd4_2/nostruct-align/3cd4_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/3c/3cd4_2/nostruct-align/3cd4_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24167/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.269531
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hrq
id: 1hrq   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hrq/nostruct-align/1hrq.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hrq/nostruct-align/1hrq.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hrq/nostruct-align/1hrq.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28909/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.471558
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hoe
id: 1hoe   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hoe/nostruct-align/1hoe.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hoe/nostruct-align/1hoe.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hoe/nostruct-align/1hoe.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25128/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.739624
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1htp
id: 1htp   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1htp/nostruct-align/1htp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1htp/nostruct-align/1htp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1htp/nostruct-align/1htp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30090/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.363647
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hulA
id: 1hulA   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hulA/nostruct-align/1hulA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hulA/nostruct-align/1hulA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hulA/nostruct-align/1hulA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-282/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.927612
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fcdA_1
id: 1fcdA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1f/1fcdA_1/nostruct-align/1fcdA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1f/1fcdA_1/nostruct-align/1fcdA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1f/1fcdA_1/nostruct-align/1fcdA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30732/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.525635
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hryA
id: 1hryA   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hryA/nostruct-align/1hryA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hryA/nostruct-align/1hryA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hryA/nostruct-align/1hryA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29580/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.859619
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hsq
id: 1hsq   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hsq/nostruct-align/1hsq.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hsq/nostruct-align/1hsq.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hsq/nostruct-align/1hsq.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28460/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.239624
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hpi
id: 1hpi   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hpi/nostruct-align/1hpi.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hpi/nostruct-align/1hpi.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hpi/nostruct-align/1hpi.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15477/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.988525
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hueA
id: 1hueA   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hueA/nostruct-align/1hueA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hueA/nostruct-align/1hueA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hueA/nostruct-align/1hueA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20035/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.021484
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1epnE
id: 1epnE   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1epnE/nostruct-align/1epnE.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1epnE/nostruct-align/1epnE.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1epnE/nostruct-align/1epnE.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-6542/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.941650
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ncfA_2
id: 1ncfA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1n/1ncfA_2/nostruct-align/1ncfA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1n/1ncfA_2/nostruct-align/1ncfA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1n/1ncfA_2/nostruct-align/1ncfA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9996/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.532593
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hstA
id: 1hstA   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hstA/nostruct-align/1hstA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hstA/nostruct-align/1hstA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hstA/nostruct-align/1hstA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32411/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.689575
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bglA_3
id: 1bglA_3   alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bglA_3/nostruct-align/1bglA_3.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bglA_3/nostruct-align/1bglA_3.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1b/1bglA_3/nostruct-align/1bglA_3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27271/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.655640
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3cd4_1
id: 3cd4_1   alignment found: /projects/compbio4/experiments/models.97/domains/3c/3cd4_1/nostruct-align/3cd4_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/3c/3cd4_1/nostruct-align/3cd4_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/3c/3cd4_1/nostruct-align/3cd4_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7271/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.420532
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2mnr_2
id: 2mnr_2   alignment found: /projects/compbio4/experiments/models.97/domains/2m/2mnr_2/nostruct-align/2mnr_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2m/2mnr_2/nostruct-align/2mnr_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2m/2mnr_2/nostruct-align/2mnr_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3867/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.237671
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2yhx_2
id: 2yhx_2   alignment found: /projects/compbio4/experiments/models.97/domains/2y/2yhx_2/nostruct-align/2yhx_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2y/2yhx_2/nostruct-align/2yhx_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2y/2yhx_2/nostruct-align/2yhx_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24027/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.416626
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1humA
id: 1humA   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1humA/nostruct-align/1humA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1humA/nostruct-align/1humA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1humA/nostruct-align/1humA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14391/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.187622
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hvd
id: 1hvd   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hvd/nostruct-align/1hvd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hvd/nostruct-align/1hvd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hvd/nostruct-align/1hvd.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-27124/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.588623
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hvm
id: 1hvm   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hvm/nostruct-align/1hvm.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hvm/nostruct-align/1hvm.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hvm/nostruct-align/1hvm.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3176/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.090576
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2yhx_1
id: 2yhx_1   alignment found: /projects/compbio4/experiments/models.97/domains/2y/2yhx_1/nostruct-align/2yhx_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2y/2yhx_1/nostruct-align/2yhx_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2y/2yhx_1/nostruct-align/2yhx_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11151/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.518555
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ts1_2
id: 2ts1_2   alignment found: /projects/compbio4/experiments/models.97/domains/2t/2ts1_2/nostruct-align/2ts1_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2t/2ts1_2/nostruct-align/2ts1_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2t/2ts1_2/nostruct-align/2ts1_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31099/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.456665
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1htmB
id: 1htmB   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1htmB/nostruct-align/1htmB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1htmB/nostruct-align/1htmB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1htmB/nostruct-align/1htmB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23752/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.700684
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cpt
id: 1cpt   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cpt/nostruct-align/1cpt.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cpt/nostruct-align/1cpt.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cpt/nostruct-align/1cpt.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20895/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.016602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ts1_1
id: 2ts1_1   alignment found: /projects/compbio4/experiments/models.97/domains/2t/2ts1_1/nostruct-align/2ts1_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2t/2ts1_1/nostruct-align/2ts1_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2t/2ts1_1/nostruct-align/2ts1_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27852/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.260620
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hyp
id: 1hyp   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hyp/nostruct-align/1hyp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hyp/nostruct-align/1hyp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hyp/nostruct-align/1hyp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21020/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.968628
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1i1b
id: 1i1b   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1i1b/nostruct-align/1i1b.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1i1b/nostruct-align/1i1b.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1i1b/nostruct-align/1i1b.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-21163/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.331665
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2tprA_3
id: 2tprA_3   alignment found: /projects/compbio4/experiments/models.97/domains/2t/2tprA_3/nostruct-align/2tprA_3.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2t/2tprA_3/nostruct-align/2tprA_3.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2t/2tprA_3/nostruct-align/2tprA_3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14521/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.928589
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1grl_2
id: 1grl_2   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1grl_2/nostruct-align/1grl_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1grl_2/nostruct-align/1grl_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1grl_2/nostruct-align/1grl_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11573/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.316650
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ifj
id: 1ifj   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ifj/nostruct-align/1ifj.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ifj/nostruct-align/1ifj.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1ifj/nostruct-align/1ifj.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21992/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.897583
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2tprA_2
id: 2tprA_2   alignment found: /projects/compbio4/experiments/models.97/domains/2t/2tprA_2/nostruct-align/2tprA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2t/2tprA_2/nostruct-align/2tprA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2t/2tprA_2/nostruct-align/2tprA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23950/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.326660
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ifl
id: 1ifl   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ifl/nostruct-align/1ifl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ifl/nostruct-align/1ifl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1ifl/nostruct-align/1ifl.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27727/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.011597
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hxn
id: 1hxn   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hxn/nostruct-align/1hxn.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hxn/nostruct-align/1hxn.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hxn/nostruct-align/1hxn.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23394/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.294556
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ica
id: 1ica   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ica/nostruct-align/1ica.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ica/nostruct-align/1ica.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1ica/nostruct-align/1ica.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30338/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.367554
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ifm
id: 1ifm   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ifm/nostruct-align/1ifm.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ifm/nostruct-align/1ifm.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1ifm/nostruct-align/1ifm.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26854/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.154663
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1igd
id: 1igd   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1igd/nostruct-align/1igd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1igd/nostruct-align/1igd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1igd/nostruct-align/1igd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6389/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.185669
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1igl
id: 1igl   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1igl/nostruct-align/1igl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1igl/nostruct-align/1igl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1igl/nostruct-align/1igl.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28748/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.353638
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hurA
id: 1hurA   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hurA/nostruct-align/1hurA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hurA/nostruct-align/1hurA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hurA/nostruct-align/1hurA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20682/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.417603
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bglA_4
id: 1bglA_4   alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bglA_4/nostruct-align/1bglA_4.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bglA_4/nostruct-align/1bglA_4.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1b/1bglA_4/nostruct-align/1bglA_4.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24862/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.843628
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1huw
id: 1huw   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1huw/nostruct-align/1huw.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1huw/nostruct-align/1huw.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1huw/nostruct-align/1huw.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28339/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.135620
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ilk
id: 1ilk   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ilk/nostruct-align/1ilk.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ilk/nostruct-align/1ilk.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1ilk/nostruct-align/1ilk.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10838/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.008667
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ifc
id: 1ifc   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ifc/nostruct-align/1ifc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ifc/nostruct-align/1ifc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1ifc/nostruct-align/1ifc.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10482/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.353638
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ilr1
id: 1ilr1   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ilr1/nostruct-align/1ilr1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ilr1/nostruct-align/1ilr1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1ilr1/nostruct-align/1ilr1.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-27321/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.899658
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1isuA
id: 1isuA   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1isuA/nostruct-align/1isuA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1isuA/nostruct-align/1isuA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1isuA/nostruct-align/1isuA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28191/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.141602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1poxA_3
id: 1poxA_3   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1poxA_3/nostruct-align/1poxA_3.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1poxA_3/nostruct-align/1poxA_3.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1poxA_3/nostruct-align/1poxA_3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13996/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.346680
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1inp
id: 1inp   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1inp/nostruct-align/1inp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1inp/nostruct-align/1inp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1inp/nostruct-align/1inp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23928/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.600708
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2tprA_1
id: 2tprA_1   alignment found: /projects/compbio4/experiments/models.97/domains/2t/2tprA_1/nostruct-align/2tprA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2t/2tprA_1/nostruct-align/2tprA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2t/2tprA_1/nostruct-align/2tprA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20910/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.588623
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1kanA
id: 1kanA   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kanA/nostruct-align/1kanA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kanA/nostruct-align/1kanA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1kanA/nostruct-align/1kanA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27265/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.650635
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1iva
id: 1iva   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iva/nostruct-align/1iva.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iva/nostruct-align/1iva.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1iva/nostruct-align/1iva.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/experiments/models.97/pdb/1i/1iva/nostruct-align/1iva.t99.a2m.gz
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.303589
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cfb_2
id: 1cfb_2   alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cfb_2/nostruct-align/1cfb_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cfb_2/nostruct-align/1cfb_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1c/1cfb_2/nostruct-align/1cfb_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13622/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.473633
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bglA_5
id: 1bglA_5   alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bglA_5/nostruct-align/1bglA_5.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bglA_5/nostruct-align/1bglA_5.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1b/1bglA_5/nostruct-align/1bglA_5.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5868/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.695679
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1kal
id: 1kal   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kal/nostruct-align/1kal.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kal/nostruct-align/1kal.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1kal/nostruct-align/1kal.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23191/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.941650
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bi6H_1
id: 1bi6H_1   alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bi6H_1/nostruct-align/1bi6H_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bi6H_1/nostruct-align/1bi6H_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1b/1bi6H_1/nostruct-align/1bi6H_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22039/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.645630
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bia_1
id: 1bia_1   alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bia_1/nostruct-align/1bia_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bia_1/nostruct-align/1bia_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1b/1bia_1/nostruct-align/1bia_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1148/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.149658
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bia_2
id: 1bia_2   alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bia_2/nostruct-align/1bia_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bia_2/nostruct-align/1bia_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1b/1bia_2/nostruct-align/1bia_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2863/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.998657
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2mnr_1
id: 2mnr_1   alignment found: /projects/compbio4/experiments/models.97/domains/2m/2mnr_1/nostruct-align/2mnr_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2m/2mnr_1/nostruct-align/2mnr_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2m/2mnr_1/nostruct-align/2mnr_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25300/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.283691
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1knb
id: 1knb   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1knb/nostruct-align/1knb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1knb/nostruct-align/1knb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1knb/nostruct-align/1knb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17916/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.860596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ithA
id: 1ithA   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ithA/nostruct-align/1ithA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ithA/nostruct-align/1ithA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1ithA/nostruct-align/1ithA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23119/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.349609
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2tmdA_3
id: 2tmdA_3   alignment found: /projects/compbio4/experiments/models.97/domains/2t/2tmdA_3/nostruct-align/2tmdA_3.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2t/2tmdA_3/nostruct-align/2tmdA_3.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2t/2tmdA_3/nostruct-align/2tmdA_3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7317/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.526611
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2tmdA_2
id: 2tmdA_2   alignment found: /projects/compbio4/experiments/models.97/domains/2t/2tmdA_2/nostruct-align/2tmdA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2t/2tmdA_2/nostruct-align/2tmdA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2t/2tmdA_2/nostruct-align/2tmdA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15196/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.686523
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hlb
id: 1hlb   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hlb/nostruct-align/1hlb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hlb/nostruct-align/1hlb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hlb/nostruct-align/1hlb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29046/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.192505
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bia_3
id: 1bia_3   alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bia_3/nostruct-align/1bia_3.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bia_3/nostruct-align/1bia_3.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1b/1bia_3/nostruct-align/1bia_3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19958/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.059692
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1itg
id: 1itg   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1itg/nostruct-align/1itg.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1itg/nostruct-align/1itg.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1itg/nostruct-align/1itg.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21631/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.855591
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bmtA_1
id: 1bmtA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bmtA_1/nostruct-align/1bmtA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bmtA_1/nostruct-align/1bmtA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1b/1bmtA_1/nostruct-align/1bmtA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18879/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.368530
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2tmdA_1
id: 2tmdA_1   alignment found: /projects/compbio4/experiments/models.97/domains/2t/2tmdA_1/nostruct-align/2tmdA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2t/2tmdA_1/nostruct-align/2tmdA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2t/2tmdA_1/nostruct-align/2tmdA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29444/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.725586
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hre
id: 1hre   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hre/nostruct-align/1hre.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hre/nostruct-align/1hre.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hre/nostruct-align/1hre.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19034/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.701538
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bmtA_2
id: 1bmtA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bmtA_2/nostruct-align/1bmtA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bmtA_2/nostruct-align/1bmtA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1b/1bmtA_2/nostruct-align/1bmtA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19545/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.915527
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2sblB_2
id: 2sblB_2   alignment found: /projects/compbio4/experiments/models.97/domains/2s/2sblB_2/nostruct-align/2sblB_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2s/2sblB_2/nostruct-align/2sblB_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2s/2sblB_2/nostruct-align/2sblB_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2191/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.086548
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1idm
id: 1idm   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1idm/nostruct-align/1idm.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1idm/nostruct-align/1idm.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1idm/nostruct-align/1idm.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5960/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.726562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bncA_1
id: 1bncA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bncA_1/nostruct-align/1bncA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bncA_1/nostruct-align/1bncA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1b/1bncA_1/nostruct-align/1bncA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29553/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.018677
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lba
id: 1lba   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lba/nostruct-align/1lba.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lba/nostruct-align/1lba.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lba/nostruct-align/1lba.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28586/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.385620
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1grl_1
id: 1grl_1   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1grl_1/nostruct-align/1grl_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1grl_1/nostruct-align/1grl_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1grl_1/nostruct-align/1grl_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26923/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.583618
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lab
id: 1lab   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lab/nostruct-align/1lab.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lab/nostruct-align/1lab.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lab/nostruct-align/1lab.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29230/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.871582
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1knt
id: 1knt   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1knt/nostruct-align/1knt.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1knt/nostruct-align/1knt.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1knt/nostruct-align/1knt.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-26537/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.814575
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lea
id: 1lea   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lea/nostruct-align/1lea.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lea/nostruct-align/1lea.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lea/nostruct-align/1lea.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14688/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.868530
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lfb
id: 1lfb   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lfb/nostruct-align/1lfb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lfb/nostruct-align/1lfb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lfb/nostruct-align/1lfb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10932/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.224609
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1kptA
id: 1kptA   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kptA/nostruct-align/1kptA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kptA/nostruct-align/1kptA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1kptA/nostruct-align/1kptA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1999/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.982666
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bncA_2
id: 1bncA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bncA_2/nostruct-align/1bncA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bncA_2/nostruct-align/1bncA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1b/1bncA_2/nostruct-align/1bncA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27483/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.336548
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1idaA
id: 1idaA   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1idaA/nostruct-align/1idaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1idaA/nostruct-align/1idaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1idaA/nostruct-align/1idaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28757/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.816528
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lccA
id: 1lccA   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lccA/nostruct-align/1lccA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lccA/nostruct-align/1lccA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lccA/nostruct-align/1lccA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4238/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.400635
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1har
id: 1har   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1har/nostruct-align/1har.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1har/nostruct-align/1har.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1har/nostruct-align/1har.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20542/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.619507
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hgeA
id: 1hgeA   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hgeA/nostruct-align/1hgeA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hgeA/nostruct-align/1hgeA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hgeA/nostruct-align/1hgeA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8035/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.646606
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ldl
id: 1ldl   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1ldl/nostruct-align/1ldl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1ldl/nostruct-align/1ldl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1ldl/nostruct-align/1ldl.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4291/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.269653
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ltsD
id: 1ltsD   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1ltsD/nostruct-align/1ltsD.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1ltsD/nostruct-align/1ltsD.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1ltsD/nostruct-align/1ltsD.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17741/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.023560
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1poxA_2
id: 1poxA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1poxA_2/nostruct-align/1poxA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1poxA_2/nostruct-align/1poxA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1poxA_2/nostruct-align/1poxA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20944/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.737671
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lis
id: 1lis   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lis/nostruct-align/1lis.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lis/nostruct-align/1lis.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lis/nostruct-align/1lis.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12896/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.941528
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lki
id: 1lki   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lki/nostruct-align/1lki.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lki/nostruct-align/1lki.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lki/nostruct-align/1lki.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19695/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.099609
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lliA
id: 1lliA   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lliA/nostruct-align/1lliA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lliA/nostruct-align/1lliA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lliA/nostruct-align/1lliA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18293/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.418579
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lpt
id: 1lpt   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lpt/nostruct-align/1lpt.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lpt/nostruct-align/1lpt.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lpt/nostruct-align/1lpt.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9479/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.679688
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lh1
id: 1lh1   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lh1/nostruct-align/1lh1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lh1/nostruct-align/1lh1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lh1/nostruct-align/1lh1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24389/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.899536
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lfaA
id: 1lfaA   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lfaA/nostruct-align/1lfaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lfaA/nostruct-align/1lfaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lfaA/nostruct-align/1lfaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11712/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.676514
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lst
id: 1lst   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lst/nostruct-align/1lst.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lst/nostruct-align/1lst.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lst/nostruct-align/1lst.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4970/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.758545
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cfb_1
id: 1cfb_1   alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cfb_1/nostruct-align/1cfb_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cfb_1/nostruct-align/1cfb_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1c/1cfb_1/nostruct-align/1cfb_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16029/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.191650
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mctI
id: 1mctI   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mctI/nostruct-align/1mctI.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mctI/nostruct-align/1mctI.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mctI/nostruct-align/1mctI.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11258/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.563599
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lgr
id: 1lgr   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lgr/nostruct-align/1lgr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lgr/nostruct-align/1lgr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lgr/nostruct-align/1lgr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26537/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.648560
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lpe
id: 1lpe   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lpe/nostruct-align/1lpe.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lpe/nostruct-align/1lpe.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lpe/nostruct-align/1lpe.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23383/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.415527
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mat
id: 1mat   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mat/nostruct-align/1mat.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mat/nostruct-align/1mat.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mat/nostruct-align/1mat.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29828/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.020508
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bncA_3
id: 1bncA_3   alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bncA_3/nostruct-align/1bncA_3.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bncA_3/nostruct-align/1bncA_3.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1b/1bncA_3/nostruct-align/1bncA_3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9898/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.086670
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hylA
id: 1hylA   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hylA/nostruct-align/1hylA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hylA/nostruct-align/1hylA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hylA/nostruct-align/1hylA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-10790/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.149658
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mba
id: 1mba   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mba/nostruct-align/1mba.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mba/nostruct-align/1mba.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mba/nostruct-align/1mba.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3822/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.684570
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mli
id: 1mli   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mli/nostruct-align/1mli.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mli/nostruct-align/1mli.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mli/nostruct-align/1mli.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24734/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.480591
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mdiA
id: 1mdiA   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mdiA/nostruct-align/1mdiA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mdiA/nostruct-align/1mdiA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mdiA/nostruct-align/1mdiA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12352/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.879517
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mjc
id: 1mjc   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mjc/nostruct-align/1mjc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mjc/nostruct-align/1mjc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mjc/nostruct-align/1mjc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23205/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.087524
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ldr
id: 1ldr   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1ldr/nostruct-align/1ldr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1ldr/nostruct-align/1ldr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1ldr/nostruct-align/1ldr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12198/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.241577
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2kauC_2
id: 2kauC_2   alignment found: /projects/compbio4/experiments/models.97/domains/2k/2kauC_2/nostruct-align/2kauC_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2k/2kauC_2/nostruct-align/2kauC_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2k/2kauC_2/nostruct-align/2kauC_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18163/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.128662
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bom_1a1
id: 1bom_1a1   alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bom_1a1/nostruct-align/1bom_1a1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bom_1a1/nostruct-align/1bom_1a1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1b/1bom_1a1/nostruct-align/1bom_1a1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25203/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.781616
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mea
id: 1mea   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mea/nostruct-align/1mea.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mea/nostruct-align/1mea.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mea/nostruct-align/1mea.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5545/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.103638
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mdyA
id: 1mdyA   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mdyA/nostruct-align/1mdyA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mdyA/nostruct-align/1mdyA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mdyA/nostruct-align/1mdyA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4887/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.526611
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1grj_2
id: 1grj_2   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1grj_2/nostruct-align/1grj_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1grj_2/nostruct-align/1grj_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1grj_2/nostruct-align/1grj_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14357/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.693604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mdc
id: 1mdc   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mdc/nostruct-align/1mdc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mdc/nostruct-align/1mdc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mdc/nostruct-align/1mdc.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-194/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.096558
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bucA_1
id: 1bucA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bucA_1/nostruct-align/1bucA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bucA_1/nostruct-align/1bucA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1b/1bucA_1/nostruct-align/1bucA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6997/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.916626
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2sblB_1
id: 2sblB_1   alignment found: /projects/compbio4/experiments/models.97/domains/2s/2sblB_1/nostruct-align/2sblB_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2s/2sblB_1/nostruct-align/2sblB_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2s/2sblB_1/nostruct-align/2sblB_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5380/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.598633
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lct
id: 1lct   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lct/nostruct-align/1lct.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lct/nostruct-align/1lct.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lct/nostruct-align/1lct.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17227/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.554565
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1molA
id: 1molA   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1molA/nostruct-align/1molA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1molA/nostruct-align/1molA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1molA/nostruct-align/1molA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19024/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.840576
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mntA
id: 1mntA   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mntA/nostruct-align/1mntA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mntA/nostruct-align/1mntA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mntA/nostruct-align/1mntA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18719/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.675537
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lxa
id: 1lxa   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lxa/nostruct-align/1lxa.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lxa/nostruct-align/1lxa.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lxa/nostruct-align/1lxa.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15668/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.893677
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2reb_2
id: 2reb_2   alignment found: /projects/compbio4/experiments/models.97/domains/2r/2reb_2/nostruct-align/2reb_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2r/2reb_2/nostruct-align/2reb_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2r/2reb_2/nostruct-align/2reb_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18927/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.719604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1poxA_1
id: 1poxA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1poxA_1/nostruct-align/1poxA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1poxA_1/nostruct-align/1poxA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1poxA_1/nostruct-align/1poxA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10951/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.175537
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bucA_2
id: 1bucA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bucA_2/nostruct-align/1bucA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bucA_2/nostruct-align/1bucA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1b/1bucA_2/nostruct-align/1bucA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3266/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.725586
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mal
id: 1mal   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mal/nostruct-align/1mal.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mal/nostruct-align/1mal.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mal/nostruct-align/1mal.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4306/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.722534
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bvp1_1
id: 1bvp1_1   alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bvp1_1/nostruct-align/1bvp1_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bvp1_1/nostruct-align/1bvp1_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1b/1bvp1_1/nostruct-align/1bvp1_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2783/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.109619
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bvp1_2
id: 1bvp1_2   alignment found: /projects/compbio4/experiments/models.97/domains/1b/1bvp1_2/nostruct-align/1bvp1_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1b/1bvp1_2/nostruct-align/1bvp1_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1b/1bvp1_2/nostruct-align/1bvp1_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5775/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.402588
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1minA
id: 1minA   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1minA/nostruct-align/1minA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1minA/nostruct-align/1minA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1minA/nostruct-align/1minA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-11622/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.472656
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cdg_1
id: 1cdg_1   alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cdg_1/nostruct-align/1cdg_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cdg_1/nostruct-align/1cdg_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1c/1cdg_1/nostruct-align/1cdg_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6722/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.026611
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1msaA
id: 1msaA   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1msaA/nostruct-align/1msaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1msaA/nostruct-align/1msaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1msaA/nostruct-align/1msaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17862/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.233643
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2reb_1
id: 2reb_1   alignment found: /projects/compbio4/experiments/models.97/domains/2r/2reb_1/nostruct-align/2reb_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2r/2reb_1/nostruct-align/2reb_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2r/2reb_1/nostruct-align/2reb_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26273/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.398560
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mup
id: 1mup   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mup/nostruct-align/1mup.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mup/nostruct-align/1mup.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mup/nostruct-align/1mup.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31492/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.489624
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cdg_2
id: 1cdg_2   alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cdg_2/nostruct-align/1cdg_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cdg_2/nostruct-align/1cdg_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1c/1cdg_2/nostruct-align/1cdg_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21082/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.837646
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2polA_3
id: 2polA_3   alignment found: /projects/compbio4/experiments/models.97/domains/2p/2polA_3/nostruct-align/2polA_3.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2p/2polA_3/nostruct-align/2polA_3.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2p/2polA_3/nostruct-align/2polA_3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21593/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.273682
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1apmE
id: 1apmE   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apmE/nostruct-align/1apmE.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apmE/nostruct-align/1apmE.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1apmE/nostruct-align/1apmE.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4239/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.343628
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mmoG
id: 1mmoG   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mmoG/nostruct-align/1mmoG.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mmoG/nostruct-align/1mmoG.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mmoG/nostruct-align/1mmoG.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8008/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.204590
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2polA_2
id: 2polA_2   alignment found: /projects/compbio4/experiments/models.97/domains/2p/2polA_2/nostruct-align/2polA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2p/2polA_2/nostruct-align/2polA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2p/2polA_2/nostruct-align/2polA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31601/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.592651
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cdg_3
id: 1cdg_3   alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cdg_3/nostruct-align/1cdg_3.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cdg_3/nostruct-align/1cdg_3.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1c/1cdg_3/nostruct-align/1cdg_3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30634/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.696655
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1kst
id: 1kst   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kst/nostruct-align/1kst.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kst/nostruct-align/1kst.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1kst/nostruct-align/1kst.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28971/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.877563
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mykA
id: 1mykA   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mykA/nostruct-align/1mykA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mykA/nostruct-align/1mykA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mykA/nostruct-align/1mykA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31278/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.061646
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mut
id: 1mut   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mut/nostruct-align/1mut.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mut/nostruct-align/1mut.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mut/nostruct-align/1mut.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1942/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.206543
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2polA_1
id: 2polA_1   alignment found: /projects/compbio4/experiments/models.97/domains/2p/2polA_1/nostruct-align/2polA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2p/2polA_1/nostruct-align/2polA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2p/2polA_1/nostruct-align/2polA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28276/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.351562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2pia_3
id: 2pia_3   alignment found: /projects/compbio4/experiments/models.97/domains/2p/2pia_3/nostruct-align/2pia_3.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2p/2pia_3/nostruct-align/2pia_3.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2p/2pia_3/nostruct-align/2pia_3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12980/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.974609
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2pia_2
id: 2pia_2   alignment found: /projects/compbio4/experiments/models.97/domains/2p/2pia_2/nostruct-align/2pia_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2p/2pia_2/nostruct-align/2pia_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2p/2pia_2/nostruct-align/2pia_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4047/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.579590
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2pia_1
id: 2pia_1   alignment found: /projects/compbio4/experiments/models.97/domains/2p/2pia_1/nostruct-align/2pia_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2p/2pia_1/nostruct-align/2pia_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2p/2pia_1/nostruct-align/2pia_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29531/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.007690
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2pgd_2
id: 2pgd_2   alignment found: /projects/compbio4/experiments/models.97/domains/2p/2pgd_2/nostruct-align/2pgd_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2p/2pgd_2/nostruct-align/2pgd_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2p/2pgd_2/nostruct-align/2pgd_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30805/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.510620
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1minB
id: 1minB   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1minB/nostruct-align/1minB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1minB/nostruct-align/1minB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1minB/nostruct-align/1minB.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-10511/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.519531
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2pgd_1
id: 2pgd_1   alignment found: /projects/compbio4/experiments/models.97/domains/2p/2pgd_1/nostruct-align/2pgd_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2p/2pgd_1/nostruct-align/2pgd_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2p/2pgd_1/nostruct-align/2pgd_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22590/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.205566
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mmoB
id: 1mmoB   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mmoB/nostruct-align/1mmoB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mmoB/nostruct-align/1mmoB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mmoB/nostruct-align/1mmoB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16865/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.631714
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mpp
id: 1mpp   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mpp/nostruct-align/1mpp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mpp/nostruct-align/1mpp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mpp/nostruct-align/1mpp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6339/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.308594
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mrj
id: 1mrj   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mrj/nostruct-align/1mrj.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mrj/nostruct-align/1mrj.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mrj/nostruct-align/1mrj.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15247/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.510620
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ohxA_2
id: 2ohxA_2   alignment found: /projects/compbio4/experiments/models.97/domains/2o/2ohxA_2/nostruct-align/2ohxA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2o/2ohxA_2/nostruct-align/2ohxA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2o/2ohxA_2/nostruct-align/2ohxA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4220/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.257568
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ohxA_1
id: 2ohxA_1   alignment found: /projects/compbio4/experiments/models.97/domains/2o/2ohxA_1/nostruct-align/2ohxA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2o/2ohxA_1/nostruct-align/2ohxA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2o/2ohxA_1/nostruct-align/2ohxA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5935/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.863647
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mpb
id: 1mpb   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mpb/nostruct-align/1mpb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mpb/nostruct-align/1mpb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mpb/nostruct-align/1mpb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29915/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -15.141602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cdg_4
id: 1cdg_4   alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cdg_4/nostruct-align/1cdg_4.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cdg_4/nostruct-align/1cdg_4.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1c/1cdg_4/nostruct-align/1cdg_4.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7233/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.856567
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2nacA_2
id: 2nacA_2   alignment found: /projects/compbio4/experiments/models.97/domains/2n/2nacA_2/nostruct-align/2nacA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2n/2nacA_2/nostruct-align/2nacA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2n/2nacA_2/nostruct-align/2nacA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24596/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.149536
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2nacA_1
id: 2nacA_1   alignment found: /projects/compbio4/experiments/models.97/domains/2n/2nacA_1/nostruct-align/2nacA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2n/2nacA_1/nostruct-align/2nacA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2n/2nacA_1/nostruct-align/2nacA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29876/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.156616
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mbd
id: 1mbd   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mbd/nostruct-align/1mbd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mbd/nostruct-align/1mbd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mbd/nostruct-align/1mbd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29840/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.517700
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1neq
id: 1neq   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1neq/nostruct-align/1neq.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1neq/nostruct-align/1neq.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1neq/nostruct-align/1neq.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25222/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.607666
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1npk
id: 1npk   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1npk/nostruct-align/1npk.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1npk/nostruct-align/1npk.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1npk/nostruct-align/1npk.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21373/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.118530
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1omc
id: 1omc   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1omc/nostruct-align/1omc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1omc/nostruct-align/1omc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1omc/nostruct-align/1omc.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-9679/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.503662
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1olgA
id: 1olgA   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1olgA/nostruct-align/1olgA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1olgA/nostruct-align/1olgA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1olgA/nostruct-align/1olgA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20548/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.365601
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1noa
id: 1noa   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1noa/nostruct-align/1noa.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1noa/nostruct-align/1noa.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1noa/nostruct-align/1noa.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27086/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.619629
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1napA
id: 1napA   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1napA/nostruct-align/1napA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1napA/nostruct-align/1napA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1napA/nostruct-align/1napA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-16707/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.954590
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1omn
id: 1omn   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1omn/nostruct-align/1omn.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1omn/nostruct-align/1omn.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1omn/nostruct-align/1omn.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-11627/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.588501
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nfp
id: 1nfp   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nfp/nostruct-align/1nfp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nfp/nostruct-align/1nfp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nfp/nostruct-align/1nfp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7687/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.968628
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1otgA
id: 1otgA   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1otgA/nostruct-align/1otgA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1otgA/nostruct-align/1otgA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1otgA/nostruct-align/1otgA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26841/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.294678
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1onc
id: 1onc   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1onc/nostruct-align/1onc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1onc/nostruct-align/1onc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1onc/nostruct-align/1onc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14679/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.809570
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2kauC_1
id: 2kauC_1   alignment found: /projects/compbio4/experiments/models.97/domains/2k/2kauC_1/nostruct-align/2kauC_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2k/2kauC_1/nostruct-align/2kauC_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2k/2kauC_1/nostruct-align/2kauC_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31391/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.127563
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1otfA
id: 1otfA   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1otfA/nostruct-align/1otfA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1otfA/nostruct-align/1otfA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1otfA/nostruct-align/1otfA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12173/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.805542
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2hft_2
id: 2hft_2   alignment found: /projects/compbio4/experiments/models.97/domains/2h/2hft_2/nostruct-align/2hft_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2h/2hft_2/nostruct-align/2hft_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2h/2hft_2/nostruct-align/2hft_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9200/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.489502
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1paa
id: 1paa   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1paa/nostruct-align/1paa.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1paa/nostruct-align/1paa.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1paa/nostruct-align/1paa.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18365/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.211548
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1grj_1
id: 1grj_1   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1grj_1/nostruct-align/1grj_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1grj_1/nostruct-align/1grj_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1grj_1/nostruct-align/1grj_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2461/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.115601
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2hft_1
id: 2hft_1   alignment found: /projects/compbio4/experiments/models.97/domains/2h/2hft_1/nostruct-align/2hft_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2h/2hft_1/nostruct-align/2hft_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2h/2hft_1/nostruct-align/2hft_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23683/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.134521
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pba
id: 1pba   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pba/nostruct-align/1pba.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pba/nostruct-align/1pba.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pba/nostruct-align/1pba.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28996/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.613647
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1opr
id: 1opr   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1opr/nostruct-align/1opr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1opr/nostruct-align/1opr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1opr/nostruct-align/1opr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6700/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.738525
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2gstA_2
id: 2gstA_2   alignment found: /projects/compbio4/experiments/models.97/domains/2g/2gstA_2/nostruct-align/2gstA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2g/2gstA_2/nostruct-align/2gstA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2g/2gstA_2/nostruct-align/2gstA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31903/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.420654
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nal1
id: 1nal1   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nal1/nostruct-align/1nal1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nal1/nostruct-align/1nal1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nal1/nostruct-align/1nal1.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-8260/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.035522
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ntr
id: 1ntr   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1ntr/nostruct-align/1ntr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1ntr/nostruct-align/1ntr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1ntr/nostruct-align/1ntr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21205/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.703613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2gstA_1
id: 2gstA_1   alignment found: /projects/compbio4/experiments/models.97/domains/2g/2gstA_1/nostruct-align/2gstA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2g/2gstA_1/nostruct-align/2gstA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2g/2gstA_1/nostruct-align/2gstA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15812/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.715698
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cgpA_1
id: 1cgpA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cgpA_1/nostruct-align/1cgpA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cgpA_1/nostruct-align/1cgpA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1c/1cgpA_1/nostruct-align/1cgpA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14419/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.016602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pbn
id: 1pbn   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pbn/nostruct-align/1pbn.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pbn/nostruct-align/1pbn.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pbn/nostruct-align/1pbn.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32579/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.249634
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pce
id: 1pce   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pce/nostruct-align/1pce.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pce/nostruct-align/1pce.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pce/nostruct-align/1pce.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27944/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.780640
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2glt_2
id: 2glt_2   alignment found: /projects/compbio4/experiments/models.97/domains/2g/2glt_2/nostruct-align/2glt_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2g/2glt_2/nostruct-align/2glt_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2g/2glt_2/nostruct-align/2glt_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21459/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.376587
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mmoD
id: 1mmoD   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mmoD/nostruct-align/1mmoD.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mmoD/nostruct-align/1mmoD.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mmoD/nostruct-align/1mmoD.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23230/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.094604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pdc
id: 1pdc   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pdc/nostruct-align/1pdc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pdc/nostruct-align/1pdc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pdc/nostruct-align/1pdc.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22375/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.882568
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2glt_1
id: 2glt_1   alignment found: /projects/compbio4/experiments/models.97/domains/2g/2glt_1/nostruct-align/2glt_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2g/2glt_1/nostruct-align/2glt_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2g/2glt_1/nostruct-align/2glt_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20850/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.235596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pdgA
id: 1pdgA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pdgA/nostruct-align/1pdgA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pdgA/nostruct-align/1pdgA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pdgA/nostruct-align/1pdgA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9382/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.458618
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pbp
id: 1pbp   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pbp/nostruct-align/1pbp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pbp/nostruct-align/1pbp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pbp/nostruct-align/1pbp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19256/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -15.713623
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2drpA_2
id: 2drpA_2   alignment found: /projects/compbio4/experiments/models.97/domains/2d/2drpA_2/nostruct-align/2drpA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2d/2drpA_2/nostruct-align/2drpA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2d/2drpA_2/nostruct-align/2drpA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23399/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.627686
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nar
id: 1nar   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nar/nostruct-align/1nar.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nar/nostruct-align/1nar.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nar/nostruct-align/1nar.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12534/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.218628
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pdnC
id: 1pdnC   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pdnC/nostruct-align/1pdnC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pdnC/nostruct-align/1pdnC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pdnC/nostruct-align/1pdnC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19556/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.896606
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cgpA_2
id: 1cgpA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cgpA_2/nostruct-align/1cgpA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cgpA_2/nostruct-align/1cgpA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1c/1cgpA_2/nostruct-align/1cgpA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-79/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.011597
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1osa
id: 1osa   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1osa/nostruct-align/1osa.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1osa/nostruct-align/1osa.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1osa/nostruct-align/1osa.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24813/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.566650
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2drpA_1
id: 2drpA_1   alignment found: /projects/compbio4/experiments/models.97/domains/2d/2drpA_1/nostruct-align/2drpA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2d/2drpA_1/nostruct-align/2drpA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2d/2drpA_1/nostruct-align/2drpA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29298/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.249634
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1oya
id: 1oya   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1oya/nostruct-align/1oya.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1oya/nostruct-align/1oya.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1oya/nostruct-align/1oya.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15688/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.298584
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1chmA_1
id: 1chmA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1c/1chmA_1/nostruct-align/1chmA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1chmA_1/nostruct-align/1chmA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1c/1chmA_1/nostruct-align/1chmA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31669/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.241577
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pcl
id: 1pcl   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pcl/nostruct-align/1pcl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pcl/nostruct-align/1pcl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pcl/nostruct-align/1pcl.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17926/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.273682
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ovaA
id: 1ovaA   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1ovaA/nostruct-align/1ovaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1ovaA/nostruct-align/1ovaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1ovaA/nostruct-align/1ovaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-706/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.887573
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2dln_2
id: 2dln_2   alignment found: /projects/compbio4/experiments/models.97/domains/2d/2dln_2/nostruct-align/2dln_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2d/2dln_2/nostruct-align/2dln_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2d/2dln_2/nostruct-align/2dln_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21329/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.902588
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2dln_1
id: 2dln_1   alignment found: /projects/compbio4/experiments/models.97/domains/2d/2dln_1/nostruct-align/2dln_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2d/2dln_1/nostruct-align/2dln_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2d/2dln_1/nostruct-align/2dln_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6756/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.623535
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pea
id: 1pea   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pea/nostruct-align/1pea.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pea/nostruct-align/1pea.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pea/nostruct-align/1pea.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18963/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.768555
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pht
id: 1pht   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pht/nostruct-align/1pht.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pht/nostruct-align/1pht.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pht/nostruct-align/1pht.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-8327/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.448608
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2dldA_2
id: 2dldA_2   alignment found: /projects/compbio4/experiments/models.97/domains/2d/2dldA_2/nostruct-align/2dldA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2d/2dldA_2/nostruct-align/2dldA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2d/2dldA_2/nostruct-align/2dldA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10623/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.233521
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nscA
id: 1nscA   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nscA/nostruct-align/1nscA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nscA/nostruct-align/1nscA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nscA/nostruct-align/1nscA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19960/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.909668
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pfkA
id: 1pfkA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pfkA/nostruct-align/1pfkA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pfkA/nostruct-align/1pfkA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pfkA/nostruct-align/1pfkA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17776/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.939697
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2dldA_1
id: 2dldA_1   alignment found: /projects/compbio4/experiments/models.97/domains/2d/2dldA_1/nostruct-align/2dldA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2d/2dldA_1/nostruct-align/2dldA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2d/2dldA_1/nostruct-align/2dldA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10921/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.880615
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1phr
id: 1phr   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1phr/nostruct-align/1phr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1phr/nostruct-align/1phr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1phr/nostruct-align/1phr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-130/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.387573
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pk4
id: 1pk4   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pk4/nostruct-align/1pk4.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pk4/nostruct-align/1pk4.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pk4/nostruct-align/1pk4.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30139/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.092651
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2cnd_2
id: 2cnd_2   alignment found: /projects/compbio4/experiments/models.97/domains/2c/2cnd_2/nostruct-align/2cnd_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2c/2cnd_2/nostruct-align/2cnd_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2c/2cnd_2/nostruct-align/2cnd_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19169/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.600586
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pil
id: 1pil   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pil/nostruct-align/1pil.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pil/nostruct-align/1pil.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pil/nostruct-align/1pil.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1102/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.782593
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2cnd_1
id: 2cnd_1   alignment found: /projects/compbio4/experiments/models.97/domains/2c/2cnd_1/nostruct-align/2cnd_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2c/2cnd_1/nostruct-align/2cnd_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2c/2cnd_1/nostruct-align/2cnd_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17745/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.911621
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mysB
id: 1mysB   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mysB/nostruct-align/1mysB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mysB/nostruct-align/1mysB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mysB/nostruct-align/1mysB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16635/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.162598
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1chmA_2
id: 1chmA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1c/1chmA_2/nostruct-align/1chmA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1chmA_2/nostruct-align/1chmA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1c/1chmA_2/nostruct-align/1chmA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12087/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.923584
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2cmd_2
id: 2cmd_2   alignment found: /projects/compbio4/experiments/models.97/domains/2c/2cmd_2/nostruct-align/2cmd_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2c/2cmd_2/nostruct-align/2cmd_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2c/2cmd_2/nostruct-align/2cmd_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4475/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.882568
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cid_1
id: 1cid_1   alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cid_1/nostruct-align/1cid_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cid_1/nostruct-align/1cid_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1c/1cid_1/nostruct-align/1cid_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7983/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.310547
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cid_2
id: 1cid_2   alignment found: /projects/compbio4/experiments/models.97/domains/1c/1cid_2/nostruct-align/1cid_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1cid_2/nostruct-align/1cid_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1c/1cid_2/nostruct-align/1cid_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18117/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.175659
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2cmd_1
id: 2cmd_1   alignment found: /projects/compbio4/experiments/models.97/domains/2c/2cmd_1/nostruct-align/2cmd_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2c/2cmd_1/nostruct-align/2cmd_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2c/2cmd_1/nostruct-align/2cmd_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32363/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.716553
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2chr_2
id: 2chr_2   alignment found: /projects/compbio4/experiments/models.97/domains/2c/2chr_2/nostruct-align/2chr_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2c/2chr_2/nostruct-align/2chr_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2c/2chr_2/nostruct-align/2chr_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24022/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.541626
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pnrA_2
id: 1pnrA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pnrA_2/nostruct-align/1pnrA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pnrA_2/nostruct-align/1pnrA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1pnrA_2/nostruct-align/1pnrA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2378/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.150635
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gpmA_3
id: 1gpmA_3   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gpmA_3/nostruct-align/1gpmA_3.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gpmA_3/nostruct-align/1gpmA_3.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1gpmA_3/nostruct-align/1gpmA_3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3449/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.999512
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nipA
id: 1nipA   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nipA/nostruct-align/1nipA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nipA/nostruct-align/1nipA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nipA/nostruct-align/1nipA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32692/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.282715
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2chr_1
id: 2chr_1   alignment found: /projects/compbio4/experiments/models.97/domains/2c/2chr_1/nostruct-align/2chr_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2c/2chr_1/nostruct-align/2chr_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2c/2chr_1/nostruct-align/2chr_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28136/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.103638
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pnrA_1
id: 1pnrA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pnrA_1/nostruct-align/1pnrA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pnrA_1/nostruct-align/1pnrA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1pnrA_1/nostruct-align/1pnrA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32222/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.360596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1php
id: 1php   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1php/nostruct-align/1php.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1php/nostruct-align/1php.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1php/nostruct-align/1php.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29345/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.439575
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2btfA_2
id: 2btfA_2   alignment found: /projects/compbio4/experiments/models.97/domains/2b/2btfA_2/nostruct-align/2btfA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2b/2btfA_2/nostruct-align/2btfA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2b/2btfA_2/nostruct-align/2btfA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1796/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.228638
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2btfA_1
id: 2btfA_1   alignment found: /projects/compbio4/experiments/models.97/domains/2b/2btfA_1/nostruct-align/2btfA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2b/2btfA_1/nostruct-align/2btfA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2b/2btfA_1/nostruct-align/2btfA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24154/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.419556
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2bb2_2
id: 2bb2_2   alignment found: /projects/compbio4/experiments/models.97/domains/2b/2bb2_2/nostruct-align/2bb2_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2b/2bb2_2/nostruct-align/2bb2_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2b/2bb2_2/nostruct-align/2bb2_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24665/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.757568
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2bb2_1
id: 2bb2_1   alignment found: /projects/compbio4/experiments/models.97/domains/2b/2bb2_1/nostruct-align/2bb2_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2b/2bb2_1/nostruct-align/2bb2_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2b/2bb2_1/nostruct-align/2bb2_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5038/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.321533
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1oxa
id: 1oxa   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1oxa/nostruct-align/1oxa.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1oxa/nostruct-align/1oxa.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1oxa/nostruct-align/1oxa.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30228/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.248657
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gpmA_2
id: 1gpmA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gpmA_2/nostruct-align/1gpmA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gpmA_2/nostruct-align/1gpmA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1gpmA_2/nostruct-align/1gpmA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13272/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.293701
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nciA
id: 1nciA   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nciA/nostruct-align/1nciA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nciA/nostruct-align/1nciA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nciA/nostruct-align/1nciA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18130/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.701660
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nbaA
id: 1nbaA   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nbaA/nostruct-align/1nbaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nbaA/nostruct-align/1nbaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nbaA/nostruct-align/1nbaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4523/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.296509
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1plq_2
id: 1plq_2   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1plq_2/nostruct-align/1plq_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1plq_2/nostruct-align/1plq_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1plq_2/nostruct-align/1plq_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28943/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.377686
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gpmA_1
id: 1gpmA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gpmA_1/nostruct-align/1gpmA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gpmA_1/nostruct-align/1gpmA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1gpmA_1/nostruct-align/1gpmA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2657/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.794678
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ach_1a1
id: 2ach_1a1   alignment found: /projects/compbio4/experiments/models.97/domains/2a/2ach_1a1/nostruct-align/2ach_1a1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2a/2ach_1a1/nostruct-align/2ach_1a1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2a/2ach_1a1/nostruct-align/2ach_1a1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22576/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.226563
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pnh
id: 1pnh   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pnh/nostruct-align/1pnh.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pnh/nostruct-align/1pnh.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pnh/nostruct-align/1pnh.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12644/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.605591
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1prtD
id: 1prtD   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1prtD/nostruct-align/1prtD.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1prtD/nostruct-align/1prtD.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1prtD/nostruct-align/1prtD.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16196/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.330566
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1prtF
id: 1prtF   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1prtF/nostruct-align/1prtF.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1prtF/nostruct-align/1prtF.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1prtF/nostruct-align/1prtF.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17296/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.170654
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pse
id: 1pse   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pse/nostruct-align/1pse.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pse/nostruct-align/1pse.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pse/nostruct-align/1pse.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32456/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.125610
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1plc
id: 1plc   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1plc/nostruct-align/1plc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1plc/nostruct-align/1plc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1plc/nostruct-align/1plc.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10086/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.586670
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1plq_1
id: 1plq_1   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1plq_1/nostruct-align/1plq_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1plq_1/nostruct-align/1plq_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1plq_1/nostruct-align/1plq_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32161/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.103638
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1poa
id: 1poa   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1poa/nostruct-align/1poa.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1poa/nostruct-align/1poa.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1poa/nostruct-align/1poa.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23304/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.838623
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pls
id: 1pls   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pls/nostruct-align/1pls.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pls/nostruct-align/1pls.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pls/nostruct-align/1pls.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29367/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.242554
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pmc
id: 1pmc   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pmc/nostruct-align/1pmc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pmc/nostruct-align/1pmc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pmc/nostruct-align/1pmc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14738/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.386719
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1prn
id: 1prn   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1prn/nostruct-align/1prn.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1prn/nostruct-align/1prn.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1prn/nostruct-align/1prn.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1613/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -25.383545
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1poh
id: 1poh   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1poh/nostruct-align/1poh.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1poh/nostruct-align/1poh.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1poh/nostruct-align/1poh.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15919/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.357666
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1prtA
id: 1prtA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1prtA/nostruct-align/1prtA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1prtA/nostruct-align/1prtA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1prtA/nostruct-align/1prtA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-4755/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.722656
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pne
id: 1pne   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pne/nostruct-align/1pne.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pne/nostruct-align/1pne.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pne/nostruct-align/1pne.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23764/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.840576
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ptf
id: 1ptf   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1ptf/nostruct-align/1ptf.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1ptf/nostruct-align/1ptf.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1ptf/nostruct-align/1ptf.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27929/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.855591
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pvuA
id: 1pvuA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pvuA/nostruct-align/1pvuA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pvuA/nostruct-align/1pvuA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pvuA/nostruct-align/1pvuA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-705/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.950684
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pta
id: 1pta   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pta/nostruct-align/1pta.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pta/nostruct-align/1pta.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pta/nostruct-align/1pta.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3255/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.717651
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1put
id: 1put   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1put/nostruct-align/1put.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1put/nostruct-align/1put.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1put/nostruct-align/1put.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6552/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.286621
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pyp
id: 1pyp   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pyp/nostruct-align/1pyp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pyp/nostruct-align/1pyp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pyp/nostruct-align/1pyp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10614/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.333618
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ptq
id: 1ptq   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1ptq/nostruct-align/1ptq.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1ptq/nostruct-align/1ptq.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1ptq/nostruct-align/1ptq.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10391/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.204590
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gph1_2
id: 1gph1_2   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gph1_2/nostruct-align/1gph1_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gph1_2/nostruct-align/1gph1_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1gph1_2/nostruct-align/1gph1_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4264/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.294678
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1clc_1
id: 1clc_1   alignment found: /projects/compbio4/experiments/models.97/domains/1c/1clc_1/nostruct-align/1clc_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1clc_1/nostruct-align/1clc_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1c/1clc_1/nostruct-align/1clc_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6264/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.325562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1r69
id: 1r69   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1r69/nostruct-align/1r69.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1r69/nostruct-align/1r69.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1r69/nostruct-align/1r69.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16997/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.112549
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1prcC
id: 1prcC   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1prcC/nostruct-align/1prcC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1prcC/nostruct-align/1prcC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1prcC/nostruct-align/1prcC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16557/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.920532
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1clc_2
id: 1clc_2   alignment found: /projects/compbio4/experiments/models.97/domains/1c/1clc_2/nostruct-align/1clc_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1clc_2/nostruct-align/1clc_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1c/1clc_2/nostruct-align/1clc_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6347/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.092651
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pkyA_3
id: 1pkyA_3   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pkyA_3/nostruct-align/1pkyA_3.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pkyA_3/nostruct-align/1pkyA_3.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1pkyA_3/nostruct-align/1pkyA_3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32106/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.506592
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2aaa_2
id: 2aaa_2   alignment found: /projects/compbio4/experiments/models.97/domains/2a/2aaa_2/nostruct-align/2aaa_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/2a/2aaa_2/nostruct-align/2aaa_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/2a/2aaa_2/nostruct-align/2aaa_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15458/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.562622
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1wgtA_3
id: 1wgtA_3   alignment found: /projects/compbio4/experiments/models.97/domains/1w/1wgtA_3/nostruct-align/1wgtA_3.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1w/1wgtA_3/nostruct-align/1wgtA_3.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1w/1wgtA_3/nostruct-align/1wgtA_3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24711/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.515625
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gph1_1
id: 1gph1_1   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gph1_1/nostruct-align/1gph1_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gph1_1/nostruct-align/1gph1_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1gph1_1/nostruct-align/1gph1_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1802/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.937622
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rcd
id: 1rcd   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rcd/nostruct-align/1rcd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rcd/nostruct-align/1rcd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rcd/nostruct-align/1rcd.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-11754/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.356567
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1wgtA_2
id: 1wgtA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1w/1wgtA_2/nostruct-align/1wgtA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1w/1wgtA_2/nostruct-align/1wgtA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1w/1wgtA_2/nostruct-align/1wgtA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21554/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.106567
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1wgtA_1
id: 1wgtA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1w/1wgtA_1/nostruct-align/1wgtA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1w/1wgtA_1/nostruct-align/1wgtA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1w/1wgtA_1/nostruct-align/1wgtA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12962/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.945557
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pvc3
id: 1pvc3   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pvc3/nostruct-align/1pvc3.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pvc3/nostruct-align/1pvc3.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pvc3/nostruct-align/1pvc3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24791/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.953613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gpb
id: 1gpb   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gpb/nostruct-align/1gpb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gpb/nostruct-align/1gpb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gpb/nostruct-align/1gpb.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16823/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.434570
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1coy_1
id: 1coy_1   alignment found: /projects/compbio4/experiments/models.97/domains/1c/1coy_1/nostruct-align/1coy_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1coy_1/nostruct-align/1coy_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1c/1coy_1/nostruct-align/1coy_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4752/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.056519
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pkyA_2
id: 1pkyA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pkyA_2/nostruct-align/1pkyA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pkyA_2/nostruct-align/1pkyA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1pkyA_2/nostruct-align/1pkyA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13530/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.746582
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vcaA_2
id: 1vcaA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1v/1vcaA_2/nostruct-align/1vcaA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1v/1vcaA_2/nostruct-align/1vcaA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1v/1vcaA_2/nostruct-align/1vcaA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4681/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.915649
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1coy_2
id: 1coy_2   alignment found: /projects/compbio4/experiments/models.97/domains/1c/1coy_2/nostruct-align/1coy_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1coy_2/nostruct-align/1coy_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1c/1coy_2/nostruct-align/1coy_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23681/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.759521
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vcaA_1
id: 1vcaA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1v/1vcaA_1/nostruct-align/1vcaA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1v/1vcaA_1/nostruct-align/1vcaA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1v/1vcaA_1/nostruct-align/1vcaA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18925/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.728638
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tssA_2
id: 1tssA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1t/1tssA_2/nostruct-align/1tssA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1t/1tssA_2/nostruct-align/1tssA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1t/1tssA_2/nostruct-align/1tssA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26701/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.469604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ctl_1
id: 1ctl_1   alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctl_1/nostruct-align/1ctl_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctl_1/nostruct-align/1ctl_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1c/1ctl_1/nostruct-align/1ctl_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24843/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.224609
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tssA_1
id: 1tssA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1t/1tssA_1/nostruct-align/1tssA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1t/1tssA_1/nostruct-align/1tssA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1t/1tssA_1/nostruct-align/1tssA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15046/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.284668
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ctl_2
id: 1ctl_2   alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctl_2/nostruct-align/1ctl_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctl_2/nostruct-align/1ctl_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1c/1ctl_2/nostruct-align/1ctl_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7934/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.932617
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pmy
id: 1pmy   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pmy/nostruct-align/1pmy.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pmy/nostruct-align/1pmy.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pmy/nostruct-align/1pmy.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9444/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.126587
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1trkA_3
id: 1trkA_3   alignment found: /projects/compbio4/experiments/models.97/domains/1t/1trkA_3/nostruct-align/1trkA_3.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1t/1trkA_3/nostruct-align/1trkA_3.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1t/1trkA_3/nostruct-align/1trkA_3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22420/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.400513
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ctm_1
id: 1ctm_1   alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctm_1/nostruct-align/1ctm_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctm_1/nostruct-align/1ctm_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1c/1ctm_1/nostruct-align/1ctm_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27635/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.439575
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1trkA_2
id: 1trkA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1t/1trkA_2/nostruct-align/1trkA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1t/1trkA_2/nostruct-align/1trkA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1t/1trkA_2/nostruct-align/1trkA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3039/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.331665
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ctm_2
id: 1ctm_2   alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctm_2/nostruct-align/1ctm_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctm_2/nostruct-align/1ctm_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1c/1ctm_2/nostruct-align/1ctm_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19289/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.762695
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ctn_1
id: 1ctn_1   alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctn_1/nostruct-align/1ctn_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctn_1/nostruct-align/1ctn_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1c/1ctn_1/nostruct-align/1ctn_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31062/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.090576
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gof_3
id: 1gof_3   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gof_3/nostruct-align/1gof_3.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gof_3/nostruct-align/1gof_3.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1gof_3/nostruct-align/1gof_3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12549/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.412598
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1poc
id: 1poc   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1poc/nostruct-align/1poc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1poc/nostruct-align/1poc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1poc/nostruct-align/1poc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19594/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.069580
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1phb
id: 1phb   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1phb/nostruct-align/1phb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1phb/nostruct-align/1phb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1phb/nostruct-align/1phb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13481/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.299561
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pkyA_1
id: 1pkyA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pkyA_1/nostruct-align/1pkyA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pkyA_1/nostruct-align/1pkyA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1pkyA_1/nostruct-align/1pkyA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9802/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.629517
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1trkA_1
id: 1trkA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1t/1trkA_1/nostruct-align/1trkA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1t/1trkA_1/nostruct-align/1trkA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1t/1trkA_1/nostruct-align/1trkA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5762/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.769653
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1res
id: 1res   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1res/nostruct-align/1res.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1res/nostruct-align/1res.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1res/nostruct-align/1res.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2278/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.675659
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tpg_2
id: 1tpg_2   alignment found: /projects/compbio4/experiments/models.97/domains/1t/1tpg_2/nostruct-align/1tpg_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1t/1tpg_2/nostruct-align/1tpg_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1t/1tpg_2/nostruct-align/1tpg_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28130/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.476685
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ris
id: 1ris   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1ris/nostruct-align/1ris.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1ris/nostruct-align/1ris.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1ris/nostruct-align/1ris.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30989/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.871582
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rvaA
id: 1rvaA   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rvaA/nostruct-align/1rvaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rvaA/nostruct-align/1rvaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rvaA/nostruct-align/1rvaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32427/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.074585
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tpg_1
id: 1tpg_1   alignment found: /projects/compbio4/experiments/models.97/domains/1t/1tpg_1/nostruct-align/1tpg_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1t/1tpg_1/nostruct-align/1tpg_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1t/1tpg_1/nostruct-align/1tpg_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15793/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.147705
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rfbA
id: 1rfbA   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rfbA/nostruct-align/1rfbA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rfbA/nostruct-align/1rfbA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rfbA/nostruct-align/1rfbA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13610/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.191528
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tde_2
id: 1tde_2   alignment found: /projects/compbio4/experiments/models.97/domains/1t/1tde_2/nostruct-align/1tde_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1t/1tde_2/nostruct-align/1tde_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1t/1tde_2/nostruct-align/1tde_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9959/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.897583
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1regX
id: 1regX   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1regX/nostruct-align/1regX.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1regX/nostruct-align/1regX.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1regX/nostruct-align/1regX.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24415/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.020630
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rpl
id: 1rpl   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rpl/nostruct-align/1rpl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rpl/nostruct-align/1rpl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rpl/nostruct-align/1rpl.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-4181/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.342529
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rsy
id: 1rsy   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rsy/nostruct-align/1rsy.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rsy/nostruct-align/1rsy.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rsy/nostruct-align/1rsy.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30876/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.120605
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rro
id: 1rro   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rro/nostruct-align/1rro.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rro/nostruct-align/1rro.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rro/nostruct-align/1rro.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18407/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.286621
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pvc1
id: 1pvc1   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pvc1/nostruct-align/1pvc1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pvc1/nostruct-align/1pvc1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pvc1/nostruct-align/1pvc1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17215/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.826538
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ctn_2
id: 1ctn_2   alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctn_2/nostruct-align/1ctn_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctn_2/nostruct-align/1ctn_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1c/1ctn_2/nostruct-align/1ctn_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10081/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.778687
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sceA
id: 1sceA   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sceA/nostruct-align/1sceA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sceA/nostruct-align/1sceA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sceA/nostruct-align/1sceA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-10396/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.533569
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tde_1
id: 1tde_1   alignment found: /projects/compbio4/experiments/models.97/domains/1t/1tde_1/nostruct-align/1tde_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1t/1tde_1/nostruct-align/1tde_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1t/1tde_1/nostruct-align/1tde_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2882/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.552612
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ctn_3
id: 1ctn_3   alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctn_3/nostruct-align/1ctn_3.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctn_3/nostruct-align/1ctn_3.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1c/1ctn_3/nostruct-align/1ctn_3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31691/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.377563
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rmi
id: 1rmi   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rmi/nostruct-align/1rmi.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rmi/nostruct-align/1rmi.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rmi/nostruct-align/1rmi.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9644/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.455566
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sbp
id: 1sbp   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sbp/nostruct-align/1sbp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sbp/nostruct-align/1sbp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sbp/nostruct-align/1sbp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21812/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.251587
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rec
id: 1rec   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rec/nostruct-align/1rec.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rec/nostruct-align/1rec.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rec/nostruct-align/1rec.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30200/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.978516
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hpm_1
id: 1hpm_1   alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hpm_1/nostruct-align/1hpm_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hpm_1/nostruct-align/1hpm_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1h/1hpm_1/nostruct-align/1hpm_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17095/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.465576
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1semA
id: 1semA   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1semA/nostruct-align/1semA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1semA/nostruct-align/1semA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1semA/nostruct-align/1semA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7621/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.735596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1scs
id: 1scs   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1scs/nostruct-align/1scs.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1scs/nostruct-align/1scs.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1scs/nostruct-align/1scs.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1952/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.946533
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ctt_1
id: 1ctt_1   alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctt_1/nostruct-align/1ctt_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctt_1/nostruct-align/1ctt_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1c/1ctt_1/nostruct-align/1ctt_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13821/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.888550
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tadA_2
id: 1tadA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1t/1tadA_2/nostruct-align/1tadA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1t/1tadA_2/nostruct-align/1tadA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1t/1tadA_2/nostruct-align/1tadA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17123/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.693604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sgc
id: 1sgc   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sgc/nostruct-align/1sgc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sgc/nostruct-align/1sgc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sgc/nostruct-align/1sgc.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-9644/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.205566
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sgpI
id: 1sgpI   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sgpI/nostruct-align/1sgpI.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sgpI/nostruct-align/1sgpI.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sgpI/nostruct-align/1sgpI.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26294/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.965576
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rip
id: 1rip   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rip/nostruct-align/1rip.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rip/nostruct-align/1rip.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rip/nostruct-align/1rip.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19393/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.031616
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sh1
id: 1sh1   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sh1/nostruct-align/1sh1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sh1/nostruct-align/1sh1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sh1/nostruct-align/1sh1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8066/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.613647
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1scmB
id: 1scmB   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1scmB/nostruct-align/1scmB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1scmB/nostruct-align/1scmB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1scmB/nostruct-align/1scmB.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-11767/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.384644
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sacA
id: 1sacA   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sacA/nostruct-align/1sacA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sacA/nostruct-align/1sacA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sacA/nostruct-align/1sacA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16009/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.632568
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ctt_2
id: 1ctt_2   alignment found: /projects/compbio4/experiments/models.97/domains/1c/1ctt_2/nostruct-align/1ctt_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1c/1ctt_2/nostruct-align/1ctt_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1c/1ctt_2/nostruct-align/1ctt_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21328/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.539673
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tadA_1
id: 1tadA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1t/1tadA_1/nostruct-align/1tadA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1t/1tadA_1/nostruct-align/1tadA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1t/1tadA_1/nostruct-align/1tadA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8512/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.946655
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rpa
id: 1rpa   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rpa/nostruct-align/1rpa.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rpa/nostruct-align/1rpa.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rpa/nostruct-align/1rpa.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21159/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.157715
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d66A_1
id: 1d66A_1   alignment found: /projects/compbio4/experiments/models.97/domains/1d/1d66A_1/nostruct-align/1d66A_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1d66A_1/nostruct-align/1d66A_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1d/1d66A_1/nostruct-align/1d66A_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29596/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.760620
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rpo
id: 1rpo   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rpo/nostruct-align/1rpo.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rpo/nostruct-align/1rpo.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rpo/nostruct-align/1rpo.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21811/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.455566
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pvdA_2
id: 1pvdA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pvdA_2/nostruct-align/1pvdA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pvdA_2/nostruct-align/1pvdA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1pvdA_2/nostruct-align/1pvdA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28664/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.638672
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ribA
id: 1ribA   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1ribA/nostruct-align/1ribA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1ribA/nostruct-align/1ribA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1ribA/nostruct-align/1ribA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-10447/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.013550
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ddt_1
id: 1ddt_1   alignment found: /projects/compbio4/experiments/models.97/domains/1d/1ddt_1/nostruct-align/1ddt_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1ddt_1/nostruct-align/1ddt_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1d/1ddt_1/nostruct-align/1ddt_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21675/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.429688
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ddt_2
id: 1ddt_2   alignment found: /projects/compbio4/experiments/models.97/domains/1d/1ddt_2/nostruct-align/1ddt_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1ddt_2/nostruct-align/1ddt_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1d/1ddt_2/nostruct-align/1ddt_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21210/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.131592
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mml
id: 1mml   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mml/nostruct-align/1mml.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mml/nostruct-align/1mml.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mml/nostruct-align/1mml.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14842/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.570679
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ddt_3
id: 1ddt_3   alignment found: /projects/compbio4/experiments/models.97/domains/1d/1ddt_3/nostruct-align/1ddt_3.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1ddt_3/nostruct-align/1ddt_3.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1d/1ddt_3/nostruct-align/1ddt_3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3461/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.872681
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1smpI
id: 1smpI   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1smpI/nostruct-align/1smpI.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1smpI/nostruct-align/1smpI.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1smpI/nostruct-align/1smpI.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8027/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.154663
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1stfI
id: 1stfI   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1stfI/nostruct-align/1stfI.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1stfI/nostruct-align/1stfI.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1stfI/nostruct-align/1stfI.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9295/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.855591
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1stu
id: 1stu   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1stu/nostruct-align/1stu.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1stu/nostruct-align/1stu.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1stu/nostruct-align/1stu.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13211/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.799561
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sty
id: 1sty   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sty/nostruct-align/1sty.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sty/nostruct-align/1sty.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sty/nostruct-align/1sty.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-12382/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.648560
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1std
id: 1std   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1std/nostruct-align/1std.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1std/nostruct-align/1std.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1std/nostruct-align/1std.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29116/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.001587
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sriA
id: 1sriA   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sriA/nostruct-align/1sriA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sriA/nostruct-align/1sriA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sriA/nostruct-align/1sriA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18516/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.636597
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sso
id: 1sso   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sso/nostruct-align/1sso.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sso/nostruct-align/1sso.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sso/nostruct-align/1sso.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28493/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.497681
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hplA_2
id: 1hplA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hplA_2/nostruct-align/1hplA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hplA_2/nostruct-align/1hplA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1h/1hplA_2/nostruct-align/1hplA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26546/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.948486
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dih_1
id: 1dih_1   alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dih_1/nostruct-align/1dih_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dih_1/nostruct-align/1dih_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1d/1dih_1/nostruct-align/1dih_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31553/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.918579
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1shfA
id: 1shfA   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1shfA/nostruct-align/1shfA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1shfA/nostruct-align/1shfA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1shfA/nostruct-align/1shfA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13591/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.904663
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tabI
id: 1tabI   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tabI/nostruct-align/1tabI.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tabI/nostruct-align/1tabI.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tabI/nostruct-align/1tabI.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1263/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.879517
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1svq
id: 1svq   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1svq/nostruct-align/1svq.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1svq/nostruct-align/1svq.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1svq/nostruct-align/1svq.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26836/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.803589
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1spbP
id: 1spbP   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1spbP/nostruct-align/1spbP.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1spbP/nostruct-align/1spbP.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1spbP/nostruct-align/1spbP.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24103/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.246582
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pspA_2
id: 1pspA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pspA_2/nostruct-align/1pspA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pspA_2/nostruct-align/1pspA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1pspA_2/nostruct-align/1pspA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8601/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.622681
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tca
id: 1tca   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tca/nostruct-align/1tca.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tca/nostruct-align/1tca.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tca/nostruct-align/1tca.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12624/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.732666
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1shg
id: 1shg   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1shg/nostruct-align/1shg.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1shg/nostruct-align/1shg.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1shg/nostruct-align/1shg.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27217/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.758545
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dih_2
id: 1dih_2   alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dih_2/nostruct-align/1dih_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dih_2/nostruct-align/1dih_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1d/1dih_2/nostruct-align/1dih_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13952/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.136597
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tfi
id: 1tfi   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tfi/nostruct-align/1tfi.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tfi/nostruct-align/1tfi.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tfi/nostruct-align/1tfi.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6085/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.320557
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tap
id: 1tap   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tap/nostruct-align/1tap.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tap/nostruct-align/1tap.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tap/nostruct-align/1tap.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31379/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.458618
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sra
id: 1sra   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sra/nostruct-align/1sra.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sra/nostruct-align/1sra.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sra/nostruct-align/1sra.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31866/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.659546
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1setA_2
id: 1setA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1s/1setA_2/nostruct-align/1setA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1s/1setA_2/nostruct-align/1setA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1s/1setA_2/nostruct-align/1setA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1256/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.443604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1smvA
id: 1smvA   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1smvA/nostruct-align/1smvA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1smvA/nostruct-align/1smvA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1smvA/nostruct-align/1smvA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6408/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.289551
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sxl
id: 1sxl   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sxl/nostruct-align/1sxl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sxl/nostruct-align/1sxl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sxl/nostruct-align/1sxl.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24042/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.018555
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hplA_1
id: 1hplA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hplA_1/nostruct-align/1hplA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hplA_1/nostruct-align/1hplA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1h/1hplA_1/nostruct-align/1hplA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3888/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.020630
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tgxA
id: 1tgxA   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tgxA/nostruct-align/1tgxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tgxA/nostruct-align/1tgxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tgxA/nostruct-align/1tgxA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4661/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.557495
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pvc2
id: 1pvc2   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pvc2/nostruct-align/1pvc2.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pvc2/nostruct-align/1pvc2.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pvc2/nostruct-align/1pvc2.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-8553/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.479614
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tfg
id: 1tfg   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tfg/nostruct-align/1tfg.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tfg/nostruct-align/1tfg.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tfg/nostruct-align/1tfg.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26543/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.811523
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tif
id: 1tif   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tif/nostruct-align/1tif.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tif/nostruct-align/1tif.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tif/nostruct-align/1tif.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20142/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.243530
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1thtA
id: 1thtA   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1thtA/nostruct-align/1thtA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1thtA/nostruct-align/1thtA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1thtA/nostruct-align/1thtA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6253/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.824585
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tgsI
id: 1tgsI   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tgsI/nostruct-align/1tgsI.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tgsI/nostruct-align/1tgsI.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tgsI/nostruct-align/1tgsI.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22735/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.672607
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pspA_1
id: 1pspA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pspA_1/nostruct-align/1pspA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pspA_1/nostruct-align/1pspA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1pspA_1/nostruct-align/1pspA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19589/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.760620
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rcf
id: 1rcf   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rcf/nostruct-align/1rcf.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rcf/nostruct-align/1rcf.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rcf/nostruct-align/1rcf.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12342/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.015503
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tie
id: 1tie   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tie/nostruct-align/1tie.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tie/nostruct-align/1tie.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tie/nostruct-align/1tie.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-12319/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -16.690674
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ten
id: 1ten   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1ten/nostruct-align/1ten.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1ten/nostruct-align/1ten.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1ten/nostruct-align/1ten.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16298/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.814575
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tig
id: 1tig   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tig/nostruct-align/1tig.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tig/nostruct-align/1tig.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tig/nostruct-align/1tig.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14346/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.435547
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tin
id: 1tin   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tin/nostruct-align/1tin.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tin/nostruct-align/1tin.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tin/nostruct-align/1tin.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-7167/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.766602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tns
id: 1tns   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tns/nostruct-align/1tns.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tns/nostruct-align/1tns.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tns/nostruct-align/1tns.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8816/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.477661
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1setA_1
id: 1setA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1s/1setA_1/nostruct-align/1setA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1s/1setA_1/nostruct-align/1setA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1s/1setA_1/nostruct-align/1setA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32471/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.160645
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1shaA
id: 1shaA   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1shaA/nostruct-align/1shaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1shaA/nostruct-align/1shaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1shaA/nostruct-align/1shaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15166/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.336548
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tahB
id: 1tahB   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tahB/nostruct-align/1tahB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tahB/nostruct-align/1tahB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tahB/nostruct-align/1tahB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30892/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.099609
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1se2_2
id: 1se2_2   alignment found: /projects/compbio4/experiments/models.97/domains/1s/1se2_2/nostruct-align/1se2_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1s/1se2_2/nostruct-align/1se2_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1s/1se2_2/nostruct-align/1se2_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6741/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.767700
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1se2_1
id: 1se2_1   alignment found: /projects/compbio4/experiments/models.97/domains/1s/1se2_1/nostruct-align/1se2_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1s/1se2_1/nostruct-align/1se2_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1s/1se2_1/nostruct-align/1se2_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24502/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.262573
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tml
id: 1tml   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tml/nostruct-align/1tml.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tml/nostruct-align/1tml.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tml/nostruct-align/1tml.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15434/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.557617
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tnfA
id: 1tnfA   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tnfA/nostruct-align/1tnfA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tnfA/nostruct-align/1tnfA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tnfA/nostruct-align/1tnfA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-11989/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.129639
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1thw
id: 1thw   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1thw/nostruct-align/1thw.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1thw/nostruct-align/1thw.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1thw/nostruct-align/1thw.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8673/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.186646
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tpfA
id: 1tpfA   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tpfA/nostruct-align/1tpfA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tpfA/nostruct-align/1tpfA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tpfA/nostruct-align/1tpfA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16474/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.181641
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tsp
id: 1tsp   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tsp/nostruct-align/1tsp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tsp/nostruct-align/1tsp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tsp/nostruct-align/1tsp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4800/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -16.146606
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1scuB_2
id: 1scuB_2   alignment found: /projects/compbio4/experiments/models.97/domains/1s/1scuB_2/nostruct-align/1scuB_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1s/1scuB_2/nostruct-align/1scuB_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1s/1scuB_2/nostruct-align/1scuB_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15966/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.284668
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tlk
id: 1tlk   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tlk/nostruct-align/1tlk.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tlk/nostruct-align/1tlk.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tlk/nostruct-align/1tlk.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9343/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.909546
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1scuB_1
id: 1scuB_1   alignment found: /projects/compbio4/experiments/models.97/domains/1s/1scuB_1/nostruct-align/1scuB_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1s/1scuB_1/nostruct-align/1scuB_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1s/1scuB_1/nostruct-align/1scuB_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2446/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.575562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tib
id: 1tib   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tib/nostruct-align/1tib.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tib/nostruct-align/1tib.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tib/nostruct-align/1tib.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1486/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.577637
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1scuA_2
id: 1scuA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1s/1scuA_2/nostruct-align/1scuA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1s/1scuA_2/nostruct-align/1scuA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1s/1scuA_2/nostruct-align/1scuA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27510/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.761597
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1slaA
id: 1slaA   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1slaA/nostruct-align/1slaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1slaA/nostruct-align/1slaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1slaA/nostruct-align/1slaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28064/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.166626
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hlpA_2
id: 1hlpA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hlpA_2/nostruct-align/1hlpA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hlpA_2/nostruct-align/1hlpA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1h/1hlpA_2/nostruct-align/1hlpA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14855/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.420532
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tlfA
id: 1tlfA   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tlfA/nostruct-align/1tlfA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tlfA/nostruct-align/1tlfA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tlfA/nostruct-align/1tlfA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1241/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.249634
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tys
id: 1tys   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tys/nostruct-align/1tys.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tys/nostruct-align/1tys.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tys/nostruct-align/1tys.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21847/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.931519
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1scuA_1
id: 1scuA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1s/1scuA_1/nostruct-align/1scuA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1s/1scuA_1/nostruct-align/1scuA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1s/1scuA_1/nostruct-align/1scuA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5791/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.173584
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1psdA_3
id: 1psdA_3   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1psdA_3/nostruct-align/1psdA_3.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1psdA_3/nostruct-align/1psdA_3.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1psdA_3/nostruct-align/1psdA_3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19341/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.123657
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rtm1_1
id: 1rtm1_1   alignment found: /projects/compbio4/experiments/models.97/domains/1r/1rtm1_1/nostruct-align/1rtm1_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1r/1rtm1_1/nostruct-align/1rtm1_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1r/1rtm1_1/nostruct-align/1rtm1_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16368/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.206665
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1raaB_2
id: 1raaB_2   alignment found: /projects/compbio4/experiments/models.97/domains/1r/1raaB_2/nostruct-align/1raaB_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1r/1raaB_2/nostruct-align/1raaB_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1r/1raaB_2/nostruct-align/1raaB_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25533/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.473511
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tupA
id: 1tupA   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tupA/nostruct-align/1tupA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tupA/nostruct-align/1tupA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tupA/nostruct-align/1tupA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9707/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.264648
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1raaB_1
id: 1raaB_1   alignment found: /projects/compbio4/experiments/models.97/domains/1r/1raaB_1/nostruct-align/1raaB_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1r/1raaB_1/nostruct-align/1raaB_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1r/1raaB_1/nostruct-align/1raaB_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30851/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.580566
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hlpA_1
id: 1hlpA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hlpA_1/nostruct-align/1hlpA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hlpA_1/nostruct-align/1hlpA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1h/1hlpA_1/nostruct-align/1hlpA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3396/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.502563
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dik_1
id: 1dik_1   alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dik_1/nostruct-align/1dik_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dik_1/nostruct-align/1dik_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1d/1dik_1/nostruct-align/1dik_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13868/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.677612
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1raaA_2
id: 1raaA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1r/1raaA_2/nostruct-align/1raaA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1r/1raaA_2/nostruct-align/1raaA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1r/1raaA_2/nostruct-align/1raaA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6303/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.248657
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1raaA_1
id: 1raaA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1r/1raaA_1/nostruct-align/1raaA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1r/1raaA_1/nostruct-align/1raaA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1r/1raaA_1/nostruct-align/1raaA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10598/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.672485
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dik_2
id: 1dik_2   alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dik_2/nostruct-align/1dik_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dik_2/nostruct-align/1dik_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1d/1dik_2/nostruct-align/1dik_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28373/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.998535
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qorA_2
id: 1qorA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1q/1qorA_2/nostruct-align/1qorA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1q/1qorA_2/nostruct-align/1qorA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1q/1qorA_2/nostruct-align/1qorA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22980/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.734619
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1psdA_2
id: 1psdA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1psdA_2/nostruct-align/1psdA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1psdA_2/nostruct-align/1psdA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1psdA_2/nostruct-align/1psdA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21587/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.963501
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1smnA
id: 1smnA   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1smnA/nostruct-align/1smnA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1smnA/nostruct-align/1smnA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1smnA/nostruct-align/1smnA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6979/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.375610
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tplA
id: 1tplA   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tplA/nostruct-align/1tplA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tplA/nostruct-align/1tplA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tplA/nostruct-align/1tplA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2344/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.280640
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dik_3
id: 1dik_3   alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dik_3/nostruct-align/1dik_3.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dik_3/nostruct-align/1dik_3.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1d/1dik_3/nostruct-align/1dik_3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28627/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.567627
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vhh
id: 1vhh   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vhh/nostruct-align/1vhh.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vhh/nostruct-align/1vhh.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vhh/nostruct-align/1vhh.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30398/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.728638
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vig
id: 1vig   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vig/nostruct-align/1vig.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vig/nostruct-align/1vig.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vig/nostruct-align/1vig.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-153/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.340576
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vmoA
id: 1vmoA   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vmoA/nostruct-align/1vmoA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vmoA/nostruct-align/1vmoA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vmoA/nostruct-align/1vmoA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5513/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.226685
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tme1
id: 1tme1   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tme1/nostruct-align/1tme1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tme1/nostruct-align/1tme1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tme1/nostruct-align/1tme1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25265/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.608643
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1udiI
id: 1udiI   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1udiI/nostruct-align/1udiI.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1udiI/nostruct-align/1udiI.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1udiI/nostruct-align/1udiI.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16755/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.493652
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qorA_1
id: 1qorA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1q/1qorA_1/nostruct-align/1qorA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1q/1qorA_1/nostruct-align/1qorA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1q/1qorA_1/nostruct-align/1qorA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28434/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.480591
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tnm
id: 1tnm   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tnm/nostruct-align/1tnm.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tnm/nostruct-align/1tnm.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tnm/nostruct-align/1tnm.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-31041/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.399536
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pyi_1a1
id: 1pyi_1a1   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pyi_1a1/nostruct-align/1pyi_1a1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pyi_1a1/nostruct-align/1pyi_1a1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1pyi_1a1/nostruct-align/1pyi_1a1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7182/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.673584
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tnrA
id: 1tnrA   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tnrA/nostruct-align/1tnrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tnrA/nostruct-align/1tnrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tnrA/nostruct-align/1tnrA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26137/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.396606
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pyiA_1
id: 1pyiA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pyiA_1/nostruct-align/1pyiA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pyiA_1/nostruct-align/1pyiA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1pyiA_1/nostruct-align/1pyiA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24583/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.847534
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1utg
id: 1utg   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1utg/nostruct-align/1utg.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1utg/nostruct-align/1utg.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1utg/nostruct-align/1utg.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19769/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.124512
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dlc_1
id: 1dlc_1   alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dlc_1/nostruct-align/1dlc_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dlc_1/nostruct-align/1dlc_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1d/1dlc_1/nostruct-align/1dlc_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16910/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.809570
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pya_1a1
id: 1pya_1a1   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pya_1a1/nostruct-align/1pya_1a1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pya_1a1/nostruct-align/1pya_1a1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1pya_1a1/nostruct-align/1pya_1a1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24023/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.118530
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pxtA_2
id: 1pxtA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pxtA_2/nostruct-align/1pxtA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pxtA_2/nostruct-align/1pxtA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1pxtA_2/nostruct-align/1pxtA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23942/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.224609
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ukz
id: 1ukz   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1ukz/nostruct-align/1ukz.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1ukz/nostruct-align/1ukz.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1ukz/nostruct-align/1ukz.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24961/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.177612
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1udg
id: 1udg   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1udg/nostruct-align/1udg.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1udg/nostruct-align/1udg.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1udg/nostruct-align/1udg.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17189/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.830566
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vil
id: 1vil   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vil/nostruct-align/1vil.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vil/nostruct-align/1vil.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vil/nostruct-align/1vil.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15909/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.266602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hle_1a1
id: 1hle_1a1   alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hle_1a1/nostruct-align/1hle_1a1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hle_1a1/nostruct-align/1hle_1a1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1h/1hle_1a1/nostruct-align/1hle_1a1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19494/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.594604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dlc_2
id: 1dlc_2   alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dlc_2/nostruct-align/1dlc_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dlc_2/nostruct-align/1dlc_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1d/1dlc_2/nostruct-align/1dlc_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2587/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.012573
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1psdA_1
id: 1psdA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1psdA_1/nostruct-align/1psdA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1psdA_1/nostruct-align/1psdA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1psdA_1/nostruct-align/1psdA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7410/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.337524
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1urnA
id: 1urnA   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1urnA/nostruct-align/1urnA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1urnA/nostruct-align/1urnA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1urnA/nostruct-align/1urnA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22963/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.362671
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pxtA_1
id: 1pxtA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pxtA_1/nostruct-align/1pxtA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pxtA_1/nostruct-align/1pxtA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1pxtA_1/nostruct-align/1pxtA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13056/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.904663
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tpt
id: 1tpt   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tpt/nostruct-align/1tpt.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tpt/nostruct-align/1tpt.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tpt/nostruct-align/1tpt.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16532/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.745605
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vcc
id: 1vcc   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vcc/nostruct-align/1vcc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vcc/nostruct-align/1vcc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vcc/nostruct-align/1vcc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7416/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.362549
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pvdA_3
id: 1pvdA_3   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pvdA_3/nostruct-align/1pvdA_3.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pvdA_3/nostruct-align/1pvdA_3.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1pvdA_3/nostruct-align/1pvdA_3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30766/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.818604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1prtB_2
id: 1prtB_2   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1prtB_2/nostruct-align/1prtB_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1prtB_2/nostruct-align/1prtB_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1prtB_2/nostruct-align/1prtB_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23671/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.104614
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1prtB_1
id: 1prtB_1   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1prtB_1/nostruct-align/1prtB_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1prtB_1/nostruct-align/1prtB_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1prtB_1/nostruct-align/1prtB_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28549/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.384521
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dlc_3
id: 1dlc_3   alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dlc_3/nostruct-align/1dlc_3.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dlc_3/nostruct-align/1dlc_3.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1d/1dlc_3/nostruct-align/1dlc_3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30357/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.103638
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1prr_2
id: 1prr_2   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1prr_2/nostruct-align/1prr_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1prr_2/nostruct-align/1prr_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1prr_2/nostruct-align/1prr_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6921/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.165527
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1prr_1
id: 1prr_1   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1prr_1/nostruct-align/1prr_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1prr_1/nostruct-align/1prr_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1prr_1/nostruct-align/1prr_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21641/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.198608
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1prhA_2
id: 1prhA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1prhA_2/nostruct-align/1prhA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1prhA_2/nostruct-align/1prhA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1prhA_2/nostruct-align/1prhA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25632/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.734619
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hc2_2
id: 1hc2_2   alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hc2_2/nostruct-align/1hc2_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hc2_2/nostruct-align/1hc2_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1h/1hc2_2/nostruct-align/1hc2_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19876/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.373657
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1udpA
id: 1udpA   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1udpA/nostruct-align/1udpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1udpA/nostruct-align/1udpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1udpA/nostruct-align/1udpA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30204/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.571655
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dlhA_1
id: 1dlhA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dlhA_1/nostruct-align/1dlhA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dlhA_1/nostruct-align/1dlhA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1d/1dlhA_1/nostruct-align/1dlhA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19071/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.645630
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1prhA_1
id: 1prhA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1prhA_1/nostruct-align/1prhA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1prhA_1/nostruct-align/1prhA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1prhA_1/nostruct-align/1prhA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32089/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.703613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1prc_1l1
id: 1prc_1l1   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1prc_1l1/nostruct-align/1prc_1l1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1prc_1l1/nostruct-align/1prc_1l1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1prc_1l1/nostruct-align/1prc_1l1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18304/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.692627
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dpgA_1
id: 1dpgA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dpgA_1/nostruct-align/1dpgA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dpgA_1/nostruct-align/1dpgA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1d/1dpgA_1/nostruct-align/1dpgA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6848/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.343628
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1prcH_1
id: 1prcH_1   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1prcH_1/nostruct-align/1prcH_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1prcH_1/nostruct-align/1prcH_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1prcH_1/nostruct-align/1prcH_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27833/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.226685
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ubi
id: 1ubi   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1ubi/nostruct-align/1ubi.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1ubi/nostruct-align/1ubi.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1ubi/nostruct-align/1ubi.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24885/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.376709
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hc2_1
id: 1hc2_1   alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hc2_1/nostruct-align/1hc2_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hc2_1/nostruct-align/1hc2_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1h/1hc2_1/nostruct-align/1hc2_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22076/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.615601
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vtmP
id: 1vtmP   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vtmP/nostruct-align/1vtmP.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vtmP/nostruct-align/1vtmP.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vtmP/nostruct-align/1vtmP.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17657/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.717651
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 256bA
id: 256bA   alignment found: /projects/compbio/experiments/models.97/pdb/25/256bA/nostruct-align/256bA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/25/256bA/nostruct-align/256bA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/25/256bA/nostruct-align/256bA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3614/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.930542
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1yrnA
id: 1yrnA   alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yrnA/nostruct-align/1yrnA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yrnA/nostruct-align/1yrnA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1y/1yrnA/nostruct-align/1yrnA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14140/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.938599
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1xxaA
id: 1xxaA   alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xxaA/nostruct-align/1xxaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xxaA/nostruct-align/1xxaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1x/1xxaA/nostruct-align/1xxaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24721/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.146606
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1znf
id: 1znf   alignment found: /projects/compbio/experiments/models.97/pdb/1z/1znf/nostruct-align/1znf.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1znf/nostruct-align/1znf.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1z/1znf/nostruct-align/1znf.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30498/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.915527
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1wapA
id: 1wapA   alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wapA/nostruct-align/1wapA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wapA/nostruct-align/1wapA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1w/1wapA/nostruct-align/1wapA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2950/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.303589
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1wsyA
id: 1wsyA   alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wsyA/nostruct-align/1wsyA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wsyA/nostruct-align/1wsyA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1w/1wsyA/nostruct-align/1wsyA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13825/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.433594
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1xnb
id: 1xnb   alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xnb/nostruct-align/1xnb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xnb/nostruct-align/1xnb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1x/1xnb/nostruct-align/1xnb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19572/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.620605
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1xyzA
id: 1xyzA   alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xyzA/nostruct-align/1xyzA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xyzA/nostruct-align/1xyzA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1x/1xyzA/nostruct-align/1xyzA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26847/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.929565
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2bbkL
id: 2bbkL   alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bbkL/nostruct-align/2bbkL.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bbkL/nostruct-align/2bbkL.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2b/2bbkL/nostruct-align/2bbkL.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14904/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.226562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1yrnB
id: 1yrnB   alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yrnB/nostruct-align/1yrnB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yrnB/nostruct-align/1yrnB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1y/1yrnB/nostruct-align/1yrnB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30760/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.642578
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2bbkH
id: 2bbkH   alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bbkH/nostruct-align/2bbkH.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bbkH/nostruct-align/2bbkH.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2b/2bbkH/nostruct-align/2bbkH.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6719/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.010620
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1wsyB
id: 1wsyB   alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wsyB/nostruct-align/1wsyB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wsyB/nostruct-align/1wsyB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1w/1wsyB/nostruct-align/1wsyB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11875/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.513672
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2aviA
id: 2aviA   alignment found: /projects/compbio/experiments/models.97/pdb/2a/2aviA/nostruct-align/2aviA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2aviA/nostruct-align/2aviA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2a/2aviA/nostruct-align/2aviA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28716/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.365601
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1zaaC
id: 1zaaC   get_template_model_for_db_search: no alignment found
entering get_template_model_for_db_search: template_id: 1dpgA_2
id: 1dpgA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dpgA_2/nostruct-align/1dpgA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dpgA_2/nostruct-align/1dpgA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1d/1dpgA_2/nostruct-align/1dpgA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13146/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.564575
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2alp
id: 2alp   alignment found: /projects/compbio/experiments/models.97/pdb/2a/2alp/nostruct-align/2alp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2alp/nostruct-align/2alp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2a/2alp/nostruct-align/2alp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19629/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.589600
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2abk
id: 2abk   alignment found: /projects/compbio/experiments/models.97/pdb/2a/2abk/nostruct-align/2abk.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2abk/nostruct-align/2abk.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2a/2abk/nostruct-align/2abk.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17377/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.174561
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1yptA
id: 1yptA   alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yptA/nostruct-align/1yptA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yptA/nostruct-align/1yptA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1y/1yptA/nostruct-align/1yptA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15781/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.467651
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dprA_1
id: 1dprA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dprA_1/nostruct-align/1dprA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dprA_1/nostruct-align/1dprA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1d/1dprA_1/nostruct-align/1dprA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14428/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.997681
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dpr_1a1
id: 1dpr_1a1   alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dpr_1a1/nostruct-align/1dpr_1a1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dpr_1a1/nostruct-align/1dpr_1a1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1d/1dpr_1a1/nostruct-align/1dpr_1a1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29712/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.749634
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ppi_2
id: 1ppi_2   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1ppi_2/nostruct-align/1ppi_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1ppi_2/nostruct-align/1ppi_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1ppi_2/nostruct-align/1ppi_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8083/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.793579
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2baa
id: 2baa   alignment found: /projects/compbio/experiments/models.97/pdb/2b/2baa/nostruct-align/2baa.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2baa/nostruct-align/2baa.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2b/2baa/nostruct-align/2baa.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27406/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -19.556641
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dsbA_1
id: 1dsbA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dsbA_1/nostruct-align/1dsbA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dsbA_1/nostruct-align/1dsbA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1d/1dsbA_1/nostruct-align/1dsbA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32085/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.103638
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ppi_1
id: 1ppi_1   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1ppi_1/nostruct-align/1ppi_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1ppi_1/nostruct-align/1ppi_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1ppi_1/nostruct-align/1ppi_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25145/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.478516
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2act
id: 2act   alignment found: /projects/compbio/experiments/models.97/pdb/2a/2act/nostruct-align/2act.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2act/nostruct-align/2act.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2a/2act/nostruct-align/2act.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17274/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.524658
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pkp_2
id: 1pkp_2   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pkp_2/nostruct-align/1pkp_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pkp_2/nostruct-align/1pkp_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1pkp_2/nostruct-align/1pkp_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2588/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.841553
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dsbA_2
id: 1dsbA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1d/1dsbA_2/nostruct-align/1dsbA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1d/1dsbA_2/nostruct-align/1dsbA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1d/1dsbA_2/nostruct-align/1dsbA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2611/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.201538
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pkp_1
id: 1pkp_1   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pkp_1/nostruct-align/1pkp_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pkp_1/nostruct-align/1pkp_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1pkp_1/nostruct-align/1pkp_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23546/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.570679
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2anhA
id: 2anhA   alignment found: /projects/compbio/experiments/models.97/pdb/2a/2anhA/nostruct-align/2anhA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2anhA/nostruct-align/2anhA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2a/2anhA/nostruct-align/2anhA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32191/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.508545
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1xsoA
id: 1xsoA   alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xsoA/nostruct-align/1xsoA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xsoA/nostruct-align/1xsoA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1x/1xsoA/nostruct-align/1xsoA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3534/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.543701
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pii_2
id: 1pii_2   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pii_2/nostruct-align/1pii_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pii_2/nostruct-align/1pii_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1pii_2/nostruct-align/1pii_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8427/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.140503
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2bpa2
id: 2bpa2   alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bpa2/nostruct-align/2bpa2.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bpa2/nostruct-align/2bpa2.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2b/2bpa2/nostruct-align/2bpa2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27070/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.275513
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2at2A
id: 2at2A   alignment found: /projects/compbio/experiments/models.97/pdb/2a/2at2A/nostruct-align/2at2A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2at2A/nostruct-align/2at2A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2a/2at2A/nostruct-align/2at2A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13513/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.918701
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2crd
id: 2crd   alignment found: /projects/compbio/experiments/models.97/pdb/2c/2crd/nostruct-align/2crd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2crd/nostruct-align/2crd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2c/2crd/nostruct-align/2crd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8422/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.897583
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ebhA_1
id: 1ebhA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1e/1ebhA_1/nostruct-align/1ebhA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1ebhA_1/nostruct-align/1ebhA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1e/1ebhA_1/nostruct-align/1ebhA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1506/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.507568
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2bgu
id: 2bgu   alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bgu/nostruct-align/2bgu.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bgu/nostruct-align/2bgu.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2b/2bgu/nostruct-align/2bgu.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4365/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.999634
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2cy3
id: 2cy3   alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cy3/nostruct-align/2cy3.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cy3/nostruct-align/2cy3.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2c/2cy3/nostruct-align/2cy3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5803/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.287598
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2bpa1
id: 2bpa1   alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bpa1/nostruct-align/2bpa1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bpa1/nostruct-align/2bpa1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2b/2bpa1/nostruct-align/2bpa1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21937/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.113525
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2acr
id: 2acr   alignment found: /projects/compbio/experiments/models.97/pdb/2a/2acr/nostruct-align/2acr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2acr/nostruct-align/2acr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2a/2acr/nostruct-align/2acr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19754/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.715698
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pii_1
id: 1pii_1   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pii_1/nostruct-align/1pii_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pii_1/nostruct-align/1pii_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1pii_1/nostruct-align/1pii_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16103/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.104614
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2chsA
id: 2chsA   alignment found: /projects/compbio/experiments/models.97/pdb/2c/2chsA/nostruct-align/2chsA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2chsA/nostruct-align/2chsA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2c/2chsA/nostruct-align/2chsA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30559/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.133545
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2bopA
id: 2bopA   alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bopA/nostruct-align/2bopA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bopA/nostruct-align/2bopA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2b/2bopA/nostruct-align/2bopA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27528/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.486694
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2cba
id: 2cba   alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cba/nostruct-align/2cba.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cba/nostruct-align/2cba.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2c/2cba/nostruct-align/2cba.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4252/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.014526
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pgs_2
id: 1pgs_2   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pgs_2/nostruct-align/1pgs_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pgs_2/nostruct-align/1pgs_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1pgs_2/nostruct-align/1pgs_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24551/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.543579
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ebhA_2
id: 1ebhA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1e/1ebhA_2/nostruct-align/1ebhA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1ebhA_2/nostruct-align/1ebhA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1e/1ebhA_2/nostruct-align/1ebhA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23359/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.266602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ccyA
id: 2ccyA   alignment found: /projects/compbio/experiments/models.97/pdb/2c/2ccyA/nostruct-align/2ccyA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2ccyA/nostruct-align/2ccyA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2c/2ccyA/nostruct-align/2ccyA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16225/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.589600
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pgs_1
id: 1pgs_1   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pgs_1/nostruct-align/1pgs_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pgs_1/nostruct-align/1pgs_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1pgs_1/nostruct-align/1pgs_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16624/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.883667
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pda_2
id: 1pda_2   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pda_2/nostruct-align/1pda_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pda_2/nostruct-align/1pda_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1pda_2/nostruct-align/1pda_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9026/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.809692
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2fgf
id: 2fgf   alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fgf/nostruct-align/2fgf.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fgf/nostruct-align/2fgf.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2f/2fgf/nostruct-align/2fgf.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5067/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.659546
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2fxb
id: 2fxb   alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fxb/nostruct-align/2fxb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fxb/nostruct-align/2fxb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2f/2fxb/nostruct-align/2fxb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15788/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.415527
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2bbvA
id: 2bbvA   alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bbvA/nostruct-align/2bbvA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bbvA/nostruct-align/2bbvA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2b/2bbvA/nostruct-align/2bbvA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27956/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.057617
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2fx2
id: 2fx2   alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fx2/nostruct-align/2fx2.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fx2/nostruct-align/2fx2.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2f/2fx2/nostruct-align/2fx2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31215/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.184570
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pda_1
id: 1pda_1   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pda_1/nostruct-align/1pda_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pda_1/nostruct-align/1pda_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1pda_1/nostruct-align/1pda_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23239/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.822632
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2end
id: 2end   alignment found: /projects/compbio/experiments/models.97/pdb/2e/2end/nostruct-align/2end.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2end/nostruct-align/2end.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2e/2end/nostruct-align/2end.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13765/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.150635
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pbe_2
id: 1pbe_2   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pbe_2/nostruct-align/1pbe_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pbe_2/nostruct-align/1pbe_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1pbe_2/nostruct-align/1pbe_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8096/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.088623
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1efgA_1
id: 1efgA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1e/1efgA_1/nostruct-align/1efgA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1efgA_1/nostruct-align/1efgA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1e/1efgA_1/nostruct-align/1efgA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19965/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.171631
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2bltA
id: 2bltA   alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bltA/nostruct-align/2bltA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bltA/nostruct-align/2bltA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2b/2bltA/nostruct-align/2bltA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27170/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.672607
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2dnjA
id: 2dnjA   alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dnjA/nostruct-align/2dnjA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dnjA/nostruct-align/2dnjA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2d/2dnjA/nostruct-align/2dnjA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10574/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.249634
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hbt_1l1
id: 1hbt_1l1   alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hbt_1l1/nostruct-align/1hbt_1l1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hbt_1l1/nostruct-align/1hbt_1l1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1h/1hbt_1l1/nostruct-align/1hbt_1l1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3002/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.673584
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2dri
id: 2dri   alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dri/nostruct-align/2dri.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dri/nostruct-align/2dri.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2d/2dri/nostruct-align/2dri.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24100/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.502563
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pbe_1
id: 1pbe_1   alignment found: /projects/compbio4/experiments/models.97/domains/1p/1pbe_1/nostruct-align/1pbe_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1p/1pbe_1/nostruct-align/1pbe_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1p/1pbe_1/nostruct-align/1pbe_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7154/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.412598
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ctb
id: 2ctb   alignment found: /projects/compbio/experiments/models.97/pdb/2c/2ctb/nostruct-align/2ctb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2ctb/nostruct-align/2ctb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2c/2ctb/nostruct-align/2ctb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21255/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.285645
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1han_2
id: 1han_2   alignment found: /projects/compbio4/experiments/models.97/domains/1h/1han_2/nostruct-align/1han_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1han_2/nostruct-align/1han_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1h/1han_2/nostruct-align/1han_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7225/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.599487
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2hhmA
id: 2hhmA   alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hhmA/nostruct-align/2hhmA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hhmA/nostruct-align/2hhmA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2h/2hhmA/nostruct-align/2hhmA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-11641/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.542603
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ordA_3
id: 1ordA_3   alignment found: /projects/compbio4/experiments/models.97/domains/1o/1ordA_3/nostruct-align/1ordA_3.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1o/1ordA_3/nostruct-align/1ordA_3.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1o/1ordA_3/nostruct-align/1ordA_3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18659/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.663574
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1han_1
id: 1han_1   alignment found: /projects/compbio4/experiments/models.97/domains/1h/1han_1/nostruct-align/1han_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1han_1/nostruct-align/1han_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1h/1han_1/nostruct-align/1han_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16036/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.571533
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ebn
id: 2ebn   alignment found: /projects/compbio/experiments/models.97/pdb/2e/2ebn/nostruct-align/2ebn.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2ebn/nostruct-align/2ebn.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2e/2ebn/nostruct-align/2ebn.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7698/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.787598
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ordA_2
id: 1ordA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1o/1ordA_2/nostruct-align/1ordA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1o/1ordA_2/nostruct-align/1ordA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1o/1ordA_2/nostruct-align/1ordA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5565/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.006592
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ordA_1
id: 1ordA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1o/1ordA_1/nostruct-align/1ordA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1o/1ordA_1/nostruct-align/1ordA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1o/1ordA_1/nostruct-align/1ordA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8616/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.060669
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ora_2
id: 1ora_2   alignment found: /projects/compbio4/experiments/models.97/domains/1o/1ora_2/nostruct-align/1ora_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1o/1ora_2/nostruct-align/1ora_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1o/1ora_2/nostruct-align/1ora_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21101/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.949585
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ora_1
id: 1ora_1   alignment found: /projects/compbio4/experiments/models.97/domains/1o/1ora_1/nostruct-align/1ora_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1o/1ora_1/nostruct-align/1ora_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1o/1ora_1/nostruct-align/1ora_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27357/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.160522
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1octC_2
id: 1octC_2   alignment found: /projects/compbio4/experiments/models.97/domains/1o/1octC_2/nostruct-align/1octC_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1o/1octC_2/nostruct-align/1octC_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1o/1octC_2/nostruct-align/1octC_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18657/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.285645
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gtrA_2
id: 1gtrA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gtrA_2/nostruct-align/1gtrA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gtrA_2/nostruct-align/1gtrA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1gtrA_2/nostruct-align/1gtrA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21484/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.987549
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1octC_1
id: 1octC_1   alignment found: /projects/compbio4/experiments/models.97/domains/1o/1octC_1/nostruct-align/1octC_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1o/1octC_1/nostruct-align/1octC_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1o/1octC_1/nostruct-align/1octC_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5594/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.611572
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2dkb
id: 2dkb   alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dkb/nostruct-align/2dkb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dkb/nostruct-align/2dkb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2d/2dkb/nostruct-align/2dkb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1834/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.552612
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2kauA
id: 2kauA   alignment found: /projects/compbio/experiments/models.97/pdb/2k/2kauA/nostruct-align/2kauA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2k/2kauA/nostruct-align/2kauA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2k/2kauA/nostruct-align/2kauA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21989/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.766602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2int
id: 2int   alignment found: /projects/compbio/experiments/models.97/pdb/2i/2int/nostruct-align/2int.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2i/2int/nostruct-align/2int.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2i/2int/nostruct-align/2int.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28982/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.468628
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2cyp
id: 2cyp   alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cyp/nostruct-align/2cyp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cyp/nostruct-align/2cyp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2c/2cyp/nostruct-align/2cyp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21228/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.498657
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1oacA_4
id: 1oacA_4   alignment found: /projects/compbio4/experiments/models.97/domains/1o/1oacA_4/nostruct-align/1oacA_4.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1o/1oacA_4/nostruct-align/1oacA_4.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1o/1oacA_4/nostruct-align/1oacA_4.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5783/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.707642
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2hts
id: 2hts   alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hts/nostruct-align/2hts.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hts/nostruct-align/2hts.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2h/2hts/nostruct-align/2hts.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17790/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.648682
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gtrA_1
id: 1gtrA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gtrA_1/nostruct-align/1gtrA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gtrA_1/nostruct-align/1gtrA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1gtrA_1/nostruct-align/1gtrA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16105/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.679565
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ncfA_1
id: 1ncfA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1n/1ncfA_1/nostruct-align/1ncfA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1n/1ncfA_1/nostruct-align/1ncfA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1n/1ncfA_1/nostruct-align/1ncfA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29567/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.840576
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ligA
id: 2ligA   alignment found: /projects/compbio/experiments/models.97/pdb/2l/2ligA/nostruct-align/2ligA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2ligA/nostruct-align/2ligA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2l/2ligA/nostruct-align/2ligA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7892/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.893677
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mysA_2
id: 1mysA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1m/1mysA_2/nostruct-align/1mysA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1m/1mysA_2/nostruct-align/1mysA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1m/1mysA_2/nostruct-align/1mysA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19994/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.897705
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2kauB
id: 2kauB   alignment found: /projects/compbio/experiments/models.97/pdb/2k/2kauB/nostruct-align/2kauB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2k/2kauB/nostruct-align/2kauB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2k/2kauB/nostruct-align/2kauB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-876/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.601562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2hipA
id: 2hipA   alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hipA/nostruct-align/2hipA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hipA/nostruct-align/2hipA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2h/2hipA/nostruct-align/2hipA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4116/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.164673
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mysA_1
id: 1mysA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1m/1mysA_1/nostruct-align/1mysA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1m/1mysA_1/nostruct-align/1mysA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1m/1mysA_1/nostruct-align/1mysA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7460/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.987671
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2lbp
id: 2lbp   alignment found: /projects/compbio/experiments/models.97/pdb/2l/2lbp/nostruct-align/2lbp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2lbp/nostruct-align/2lbp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2l/2lbp/nostruct-align/2lbp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4987/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.881592
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2hmqA
id: 2hmqA   alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hmqA/nostruct-align/2hmqA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hmqA/nostruct-align/2hmqA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2h/2hmqA/nostruct-align/2hmqA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4742/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.720581
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gseA_2
id: 1gseA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gseA_2/nostruct-align/1gseA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gseA_2/nostruct-align/1gseA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1gseA_2/nostruct-align/1gseA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17621/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.252563
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ifo
id: 2ifo   alignment found: /projects/compbio/experiments/models.97/pdb/2i/2ifo/nostruct-align/2ifo.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2i/2ifo/nostruct-align/2ifo.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2i/2ifo/nostruct-align/2ifo.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32090/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.961670
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mseC_2
id: 1mseC_2   alignment found: /projects/compbio4/experiments/models.97/domains/1m/1mseC_2/nostruct-align/1mseC_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1m/1mseC_2/nostruct-align/1mseC_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1m/1mseC_2/nostruct-align/1mseC_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3293/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.560547
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ila
id: 2ila   alignment found: /projects/compbio/experiments/models.97/pdb/2i/2ila/nostruct-align/2ila.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2i/2ila/nostruct-align/2ila.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2i/2ila/nostruct-align/2ila.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1007/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.177612
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mseC_1
id: 1mseC_1   alignment found: /projects/compbio4/experiments/models.97/domains/1m/1mseC_1/nostruct-align/1mseC_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1m/1mseC_1/nostruct-align/1mseC_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1m/1mseC_1/nostruct-align/1mseC_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21668/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.684570
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mngA_2
id: 1mngA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1m/1mngA_2/nostruct-align/1mngA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1m/1mngA_2/nostruct-align/1mngA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1m/1mngA_2/nostruct-align/1mngA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29123/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.116577
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gseA_1
id: 1gseA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gseA_1/nostruct-align/1gseA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gseA_1/nostruct-align/1gseA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1gseA_1/nostruct-align/1gseA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20277/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.129639
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mngA_1
id: 1mngA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1m/1mngA_1/nostruct-align/1mngA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1m/1mngA_1/nostruct-align/1mngA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1m/1mngA_1/nostruct-align/1mngA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13970/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.381592
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mla_2
id: 1mla_2   alignment found: /projects/compbio4/experiments/models.97/domains/1m/1mla_2/nostruct-align/1mla_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1m/1mla_2/nostruct-align/1mla_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1m/1mla_2/nostruct-align/1mla_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1379/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.729492
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2mev1
id: 2mev1   alignment found: /projects/compbio/experiments/models.97/pdb/2m/2mev1/nostruct-align/2mev1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2mev1/nostruct-align/2mev1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2m/2mev1/nostruct-align/2mev1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14619/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.388550
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1efgA_2
id: 1efgA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1e/1efgA_2/nostruct-align/1efgA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1efgA_2/nostruct-align/1efgA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1e/1efgA_2/nostruct-align/1efgA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1832/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.244507
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2cpl
id: 2cpl   alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cpl/nostruct-align/2cpl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cpl/nostruct-align/2cpl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2c/2cpl/nostruct-align/2cpl.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6080/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.186646
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1grl_3
id: 1grl_3   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1grl_3/nostruct-align/1grl_3.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1grl_3/nostruct-align/1grl_3.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1grl_3/nostruct-align/1grl_3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2857/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.307617
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1efgA_3
id: 1efgA_3   alignment found: /projects/compbio4/experiments/models.97/domains/1e/1efgA_3/nostruct-align/1efgA_3.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1efgA_3/nostruct-align/1efgA_3.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1e/1efgA_3/nostruct-align/1efgA_3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20995/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.579590
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1efgA_4
id: 1efgA_4   alignment found: /projects/compbio4/experiments/models.97/domains/1e/1efgA_4/nostruct-align/1efgA_4.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1efgA_4/nostruct-align/1efgA_4.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1e/1efgA_4/nostruct-align/1efgA_4.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29344/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.920654
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1eft_1
id: 1eft_1   alignment found: /projects/compbio4/experiments/models.97/domains/1e/1eft_1/nostruct-align/1eft_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1eft_1/nostruct-align/1eft_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1e/1eft_1/nostruct-align/1eft_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12169/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.825562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mla_1
id: 1mla_1   alignment found: /projects/compbio4/experiments/models.97/domains/1m/1mla_1/nostruct-align/1mla_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1m/1mla_1/nostruct-align/1mla_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1m/1mla_1/nostruct-align/1mla_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26470/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.039673
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2hnp
id: 2hnp   alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hnp/nostruct-align/2hnp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hnp/nostruct-align/2hnp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2h/2hnp/nostruct-align/2hnp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25074/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.599609
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4cpaI
id: 4cpaI   alignment found: /projects/compbio/experiments/models.97/pdb/4c/4cpaI/nostruct-align/4cpaI.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/4c/4cpaI/nostruct-align/4cpaI.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/4c/4cpaI/nostruct-align/4cpaI.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7833/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.049683
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4sgbI
id: 4sgbI   alignment found: /projects/compbio/experiments/models.97/pdb/4s/4sgbI/nostruct-align/4sgbI.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/4s/4sgbI/nostruct-align/4sgbI.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/4s/4sgbI/nostruct-align/4sgbI.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20521/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.150635
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gesA_1
id: 1gesA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gesA_1/nostruct-align/1gesA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gesA_1/nostruct-align/1gesA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1gesA_1/nostruct-align/1gesA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15366/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.937622
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4icb
id: 4icb   alignment found: /projects/compbio/experiments/models.97/pdb/4i/4icb/nostruct-align/4icb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/4i/4icb/nostruct-align/4icb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/4i/4icb/nostruct-align/4icb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8496/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.616699
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1eft_2
id: 1eft_2   alignment found: /projects/compbio4/experiments/models.97/domains/1e/1eft_2/nostruct-align/1eft_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1eft_2/nostruct-align/1eft_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1e/1eft_2/nostruct-align/1eft_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13466/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.066650
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3sdhA
id: 3sdhA   alignment found: /projects/compbio/experiments/models.97/pdb/3s/3sdhA/nostruct-align/3sdhA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3s/3sdhA/nostruct-align/3sdhA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3s/3sdhA/nostruct-align/3sdhA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14758/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.416626
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3rubS
id: 3rubS   alignment found: /projects/compbio/experiments/models.97/pdb/3r/3rubS/nostruct-align/3rubS.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3r/3rubS/nostruct-align/3rubS.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3r/3rubS/nostruct-align/3rubS.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30990/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.193604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4fxn
id: 4fxn   alignment found: /projects/compbio/experiments/models.97/pdb/4f/4fxn/nostruct-align/4fxn.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/4f/4fxn/nostruct-align/4fxn.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/4f/4fxn/nostruct-align/4fxn.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20626/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.178589
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 9rnt
id: 9rnt   alignment found: /projects/compbio/experiments/models.97/pdb/9r/9rnt/nostruct-align/9rnt.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/9r/9rnt/nostruct-align/9rnt.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/9r/9rnt/nostruct-align/9rnt.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31867/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.228638
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 5cytR
id: 5cytR   alignment found: /projects/compbio/experiments/models.97/pdb/5c/5cytR/nostruct-align/5cytR.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/5c/5cytR/nostruct-align/5cytR.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/5c/5cytR/nostruct-align/5cytR.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10859/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.498657
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3tgl
id: 3tgl   alignment found: /projects/compbio/experiments/models.97/pdb/3t/3tgl/nostruct-align/3tgl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3t/3tgl/nostruct-align/3tgl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3t/3tgl/nostruct-align/3tgl.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5401/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.285645
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 8dfr
id: 8dfr   alignment found: /projects/compbio/experiments/models.97/pdb/8d/8dfr/nostruct-align/8dfr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/8d/8dfr/nostruct-align/8dfr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/8d/8dfr/nostruct-align/8dfr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14801/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.972656
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gdhA_2
id: 1gdhA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gdhA_2/nostruct-align/1gdhA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gdhA_2/nostruct-align/1gdhA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1gdhA_2/nostruct-align/1gdhA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-51/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.004517
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mhl_1a1
id: 1mhl_1a1   alignment found: /projects/compbio4/experiments/models.97/domains/1m/1mhl_1a1/nostruct-align/1mhl_1a1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1m/1mhl_1a1/nostruct-align/1mhl_1a1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1m/1mhl_1a1/nostruct-align/1mhl_1a1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7510/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.523560
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 8rxnA
id: 8rxnA   alignment found: /projects/compbio/experiments/models.97/pdb/8r/8rxnA/nostruct-align/8rxnA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/8r/8rxnA/nostruct-align/8rxnA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/8r/8rxnA/nostruct-align/8rxnA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21765/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.234497
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4mt2
id: 4mt2   alignment found: /projects/compbio/experiments/models.97/pdb/4m/4mt2/nostruct-align/4mt2.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/4m/4mt2/nostruct-align/4mt2.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/4m/4mt2/nostruct-align/4mt2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28810/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.601562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3inkC
id: 3inkC   alignment found: /projects/compbio/experiments/models.97/pdb/3i/3inkC/nostruct-align/3inkC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3i/3inkC/nostruct-align/3inkC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3i/3inkC/nostruct-align/3inkC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1841/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.576538
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3pgm
id: 3pgm   alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pgm/nostruct-align/3pgm.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pgm/nostruct-align/3pgm.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3p/3pgm/nostruct-align/3pgm.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21457/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.143555
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gdhA_1
id: 1gdhA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gdhA_1/nostruct-align/1gdhA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gdhA_1/nostruct-align/1gdhA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1gdhA_1/nostruct-align/1gdhA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32082/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.399536
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3pga1
id: 3pga1   alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pga1/nostruct-align/3pga1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pga1/nostruct-align/3pga1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3p/3pga1/nostruct-align/3pga1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2577/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.948608
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3bcl
id: 3bcl   alignment found: /projects/compbio/experiments/models.97/pdb/3b/3bcl/nostruct-align/3bcl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3b/3bcl/nostruct-align/3bcl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3b/3bcl/nostruct-align/3bcl.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18714/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.973633
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 351c
id: 351c   alignment found: /projects/compbio/experiments/models.97/pdb/35/351c/nostruct-align/351c.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/35/351c/nostruct-align/351c.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/35/351c/nostruct-align/351c.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16396/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.618530
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4ptp
id: 4ptp   alignment found: /projects/compbio/experiments/models.97/pdb/4p/4ptp/nostruct-align/4ptp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/4p/4ptp/nostruct-align/4ptp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/4p/4ptp/nostruct-align/4ptp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15244/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.607544
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ztaA
id: 2ztaA   alignment found: /projects/compbio/experiments/models.97/pdb/2z/2ztaA/nostruct-align/2ztaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2z/2ztaA/nostruct-align/2ztaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2z/2ztaA/nostruct-align/2ztaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14124/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.593506
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3cla
id: 3cla   alignment found: /projects/compbio/experiments/models.97/pdb/3c/3cla/nostruct-align/3cla.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3cla/nostruct-align/3cla.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3c/3cla/nostruct-align/3cla.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31845/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.017578
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 5znf
id: 5znf   alignment found: /projects/compbio/experiments/models.97/pdb/5z/5znf/nostruct-align/5znf.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/5z/5znf/nostruct-align/5znf.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/5z/5znf/nostruct-align/5znf.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5699/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.783569
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 8abp
id: 8abp   alignment found: /projects/compbio/experiments/models.97/pdb/8a/8abp/nostruct-align/8abp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/8a/8abp/nostruct-align/8abp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/8a/8abp/nostruct-align/8abp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5394/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.853638
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3b5c
id: 3b5c   alignment found: /projects/compbio/experiments/models.97/pdb/3b/3b5c/nostruct-align/3b5c.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3b/3b5c/nostruct-align/3b5c.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3b/3b5c/nostruct-align/3b5c.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28428/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.028564
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3rp2A
id: 3rp2A   alignment found: /projects/compbio/experiments/models.97/pdb/3r/3rp2A/nostruct-align/3rp2A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3r/3rp2A/nostruct-align/3rp2A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3r/3rp2A/nostruct-align/3rp2A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11612/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.558594
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1irk
id: 1irk   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1irk/nostruct-align/1irk.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1irk/nostruct-align/1irk.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1irk/nostruct-align/1irk.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12935/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.199585
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vsgA
id: 1vsgA   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vsgA/nostruct-align/1vsgA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vsgA/nostruct-align/1vsgA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vsgA/nostruct-align/1vsgA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23446/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.868530
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3dfr
id: 3dfr   alignment found: /projects/compbio/experiments/models.97/pdb/3d/3dfr/nostruct-align/3dfr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3d/3dfr/nostruct-align/3dfr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3d/3dfr/nostruct-align/3dfr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22299/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.780518
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gd1O_2
id: 1gd1O_2   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gd1O_2/nostruct-align/1gd1O_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gd1O_2/nostruct-align/1gd1O_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1gd1O_2/nostruct-align/1gd1O_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9691/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.169556
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2lhb
id: 2lhb   alignment found: /projects/compbio/experiments/models.97/pdb/2l/2lhb/nostruct-align/2lhb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2lhb/nostruct-align/2lhb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2l/2lhb/nostruct-align/2lhb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10828/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.931519
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2pdd
id: 2pdd   alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pdd/nostruct-align/2pdd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pdd/nostruct-align/2pdd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2p/2pdd/nostruct-align/2pdd.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-9413/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.988525
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2mtaC
id: 2mtaC   alignment found: /projects/compbio/experiments/models.97/pdb/2m/2mtaC/nostruct-align/2mtaC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2mtaC/nostruct-align/2mtaC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2m/2mtaC/nostruct-align/2mtaC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14151/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.791504
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3pte
id: 3pte   alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pte/nostruct-align/3pte.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pte/nostruct-align/3pte.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3p/3pte/nostruct-align/3pte.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-53/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.940552
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lylA_2
id: 1lylA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lylA_2/nostruct-align/1lylA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lylA_2/nostruct-align/1lylA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1l/1lylA_2/nostruct-align/1lylA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20219/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.426636
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 7rsa
id: 7rsa   alignment found: /projects/compbio/experiments/models.97/pdb/7r/7rsa/nostruct-align/7rsa.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/7r/7rsa/nostruct-align/7rsa.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/7r/7rsa/nostruct-align/7rsa.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7142/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.958618
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ptl
id: 2ptl   alignment found: /projects/compbio/experiments/models.97/pdb/2p/2ptl/nostruct-align/2ptl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2ptl/nostruct-align/2ptl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2p/2ptl/nostruct-align/2ptl.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11335/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.252563
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2wrpR
id: 2wrpR   alignment found: /projects/compbio/experiments/models.97/pdb/2w/2wrpR/nostruct-align/2wrpR.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2w/2wrpR/nostruct-align/2wrpR.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2w/2wrpR/nostruct-align/2wrpR.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4138/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.697632
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2pna
id: 2pna   alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pna/nostruct-align/2pna.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pna/nostruct-align/2pna.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2p/2pna/nostruct-align/2pna.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23490/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.584717
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fbr_2
id: 1fbr_2   alignment found: /projects/compbio4/experiments/models.97/domains/1f/1fbr_2/nostruct-align/1fbr_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1f/1fbr_2/nostruct-align/1fbr_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1f/1fbr_2/nostruct-align/1fbr_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30095/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.270630
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2prd
id: 2prd   alignment found: /projects/compbio/experiments/models.97/pdb/2p/2prd/nostruct-align/2prd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2prd/nostruct-align/2prd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2p/2prd/nostruct-align/2prd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25872/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.744629
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3cbh
id: 3cbh   alignment found: /projects/compbio/experiments/models.97/pdb/3c/3cbh/nostruct-align/3cbh.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3cbh/nostruct-align/3cbh.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3c/3cbh/nostruct-align/3cbh.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8956/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.121582
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lylA_1
id: 1lylA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lylA_1/nostruct-align/1lylA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lylA_1/nostruct-align/1lylA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1l/1lylA_1/nostruct-align/1lylA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11604/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.451538
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ms2A
id: 2ms2A   alignment found: /projects/compbio/experiments/models.97/pdb/2m/2ms2A/nostruct-align/2ms2A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2ms2A/nostruct-align/2ms2A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2m/2ms2A/nostruct-align/2ms2A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1988/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.308594
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2sicI
id: 2sicI   alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sicI/nostruct-align/2sicI.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sicI/nostruct-align/2sicI.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2s/2sicI/nostruct-align/2sicI.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4497/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.224609
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2pec
id: 2pec   alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pec/nostruct-align/2pec.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pec/nostruct-align/2pec.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2p/2pec/nostruct-align/2pec.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27565/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.793701
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fbr_1
id: 1fbr_1   alignment found: /projects/compbio4/experiments/models.97/domains/1f/1fbr_1/nostruct-align/1fbr_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1f/1fbr_1/nostruct-align/1fbr_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1f/1fbr_1/nostruct-align/1fbr_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18106/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.196533
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2tgf
id: 2tgf   alignment found: /projects/compbio/experiments/models.97/pdb/2t/2tgf/nostruct-align/2tgf.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2tgf/nostruct-align/2tgf.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2t/2tgf/nostruct-align/2tgf.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32704/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.351685
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2hmx
id: 2hmx   alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hmx/nostruct-align/2hmx.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hmx/nostruct-align/2hmx.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2h/2hmx/nostruct-align/2hmx.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29166/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.803589
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2rn2
id: 2rn2   alignment found: /projects/compbio/experiments/models.97/pdb/2r/2rn2/nostruct-align/2rn2.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2r/2rn2/nostruct-align/2rn2.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2r/2rn2/nostruct-align/2rn2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17523/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.186523
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2tbvA
id: 2tbvA   alignment found: /projects/compbio/experiments/models.97/pdb/2t/2tbvA/nostruct-align/2tbvA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2tbvA/nostruct-align/2tbvA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2t/2tbvA/nostruct-align/2tbvA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-594/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.179688
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2rslA
id: 2rslA   alignment found: /projects/compbio/experiments/models.97/pdb/2r/2rslA/nostruct-align/2rslA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2r/2rslA/nostruct-align/2rslA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2r/2rslA/nostruct-align/2rslA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13503/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.196533
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lvl_3
id: 1lvl_3   alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lvl_3/nostruct-align/1lvl_3.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lvl_3/nostruct-align/1lvl_3.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1l/1lvl_3/nostruct-align/1lvl_3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29668/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.967529
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2spcA
id: 2spcA   alignment found: /projects/compbio/experiments/models.97/pdb/2s/2spcA/nostruct-align/2spcA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2spcA/nostruct-align/2spcA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2s/2spcA/nostruct-align/2spcA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13320/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.105591
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ezm_2
id: 1ezm_2   alignment found: /projects/compbio4/experiments/models.97/domains/1e/1ezm_2/nostruct-align/1ezm_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1ezm_2/nostruct-align/1ezm_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1e/1ezm_2/nostruct-align/1ezm_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12981/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.338623
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2sn3
id: 2sn3   alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sn3/nostruct-align/2sn3.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sn3/nostruct-align/2sn3.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2s/2sn3/nostruct-align/2sn3.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15309/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.113647
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2snv
id: 2snv   alignment found: /projects/compbio/experiments/models.97/pdb/2s/2snv/nostruct-align/2snv.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2snv/nostruct-align/2snv.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2s/2snv/nostruct-align/2snv.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22497/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.555664
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2sas
id: 2sas   alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sas/nostruct-align/2sas.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sas/nostruct-align/2sas.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2s/2sas/nostruct-align/2sas.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22261/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.734497
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2por
id: 2por   alignment found: /projects/compbio/experiments/models.97/pdb/2p/2por/nostruct-align/2por.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2por/nostruct-align/2por.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2p/2por/nostruct-align/2por.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29556/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -25.510620
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lvl_2
id: 1lvl_2   alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lvl_2/nostruct-align/1lvl_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lvl_2/nostruct-align/1lvl_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1l/1lvl_2/nostruct-align/1lvl_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11225/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.559570
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 5p21
id: 5p21   alignment found: /projects/compbio/experiments/models.97/pdb/5p/5p21/nostruct-align/5p21.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/5p/5p21/nostruct-align/5p21.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/5p/5p21/nostruct-align/5p21.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2410/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.184570
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2tct
id: 2tct   alignment found: /projects/compbio/experiments/models.97/pdb/2t/2tct/nostruct-align/2tct.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2tct/nostruct-align/2tct.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2t/2tct/nostruct-align/2tct.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8855/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.703613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3aahA
id: 3aahA   alignment found: /projects/compbio/experiments/models.97/pdb/3a/3aahA/nostruct-align/3aahA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3a/3aahA/nostruct-align/3aahA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3a/3aahA/nostruct-align/3aahA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20571/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.871582
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2trxA
id: 2trxA   alignment found: /projects/compbio/experiments/models.97/pdb/2t/2trxA/nostruct-align/2trxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2trxA/nostruct-align/2trxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2t/2trxA/nostruct-align/2trxA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13873/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.097656
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ezm_1
id: 1ezm_1   alignment found: /projects/compbio4/experiments/models.97/domains/1e/1ezm_1/nostruct-align/1ezm_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1ezm_1/nostruct-align/1ezm_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1e/1ezm_1/nostruct-align/1ezm_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22114/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.228638
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1eft_3
id: 1eft_3   alignment found: /projects/compbio4/experiments/models.97/domains/1e/1eft_3/nostruct-align/1eft_3.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1eft_3/nostruct-align/1eft_3.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1e/1eft_3/nostruct-align/1eft_3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26369/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.597656
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2phy
id: 2phy   alignment found: /projects/compbio/experiments/models.97/pdb/2p/2phy/nostruct-align/2phy.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2phy/nostruct-align/2phy.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2p/2phy/nostruct-align/2phy.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19650/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.467529
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lvl_1
id: 1lvl_1   alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lvl_1/nostruct-align/1lvl_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lvl_1/nostruct-align/1lvl_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1l/1lvl_1/nostruct-align/1lvl_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18797/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.878662
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lts_1a1
id: 1lts_1a1   alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lts_1a1/nostruct-align/1lts_1a1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lts_1a1/nostruct-align/1lts_1a1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1l/1lts_1a1/nostruct-align/1lts_1a1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28555/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.995605
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lpbA_2
id: 1lpbA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lpbA_2/nostruct-align/1lpbA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lpbA_2/nostruct-align/1lpbA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1l/1lpbA_2/nostruct-align/1lpbA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6990/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.088623
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1esl_2
id: 1esl_2   alignment found: /projects/compbio4/experiments/models.97/domains/1e/1esl_2/nostruct-align/1esl_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1esl_2/nostruct-align/1esl_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1e/1esl_2/nostruct-align/1esl_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2770/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.081665
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2pcdA
id: 2pcdA   alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pcdA/nostruct-align/2pcdA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pcdA/nostruct-align/2pcdA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2p/2pcdA/nostruct-align/2pcdA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19039/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.606567
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2pldA
id: 2pldA   alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pldA/nostruct-align/2pldA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pldA/nostruct-align/2pldA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2p/2pldA/nostruct-align/2pldA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18929/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.991699
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lpbA_1
id: 1lpbA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lpbA_1/nostruct-align/1lpbA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lpbA_1/nostruct-align/1lpbA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1l/1lpbA_1/nostruct-align/1lpbA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24158/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.406616
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3nn9
id: 3nn9   alignment found: /projects/compbio/experiments/models.97/pdb/3n/3nn9/nostruct-align/3nn9.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3n/3nn9/nostruct-align/3nn9.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3n/3nn9/nostruct-align/3nn9.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-18828/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.550659
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 5fbpA
id: 5fbpA   alignment found: /projects/compbio/experiments/models.97/pdb/5f/5fbpA/nostruct-align/5fbpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/5f/5fbpA/nostruct-align/5fbpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/5f/5fbpA/nostruct-align/5fbpA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10638/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.453613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2pcdM
id: 2pcdM   alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pcdM/nostruct-align/2pcdM.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pcdM/nostruct-align/2pcdM.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2p/2pcdM/nostruct-align/2pcdM.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9678/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.291504
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lldA_2
id: 1lldA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lldA_2/nostruct-align/1lldA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lldA_2/nostruct-align/1lldA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1l/1lldA_2/nostruct-align/1lldA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2934/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.560669
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1esl_1
id: 1esl_1   alignment found: /projects/compbio4/experiments/models.97/domains/1e/1esl_1/nostruct-align/1esl_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1e/1esl_1/nostruct-align/1esl_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1e/1esl_1/nostruct-align/1esl_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20284/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.908691
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2stv
id: 2stv   alignment found: /projects/compbio/experiments/models.97/pdb/2s/2stv/nostruct-align/2stv.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2stv/nostruct-align/2stv.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2s/2stv/nostruct-align/2stv.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30865/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.984619
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2scpA
id: 2scpA   alignment found: /projects/compbio/experiments/models.97/pdb/2s/2scpA/nostruct-align/2scpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2scpA/nostruct-align/2scpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2s/2scpA/nostruct-align/2scpA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3874/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.191650
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2sil
id: 2sil   alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sil/nostruct-align/2sil.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sil/nostruct-align/2sil.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2s/2sil/nostruct-align/2sil.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9094/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -15.038574
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lldA_1
id: 1lldA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lldA_1/nostruct-align/1lldA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lldA_1/nostruct-align/1lldA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1l/1lldA_1/nostruct-align/1lldA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19969/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.556519
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3chy
id: 3chy   alignment found: /projects/compbio/experiments/models.97/pdb/3c/3chy/nostruct-align/3chy.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3chy/nostruct-align/3chy.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3c/3chy/nostruct-align/3chy.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13587/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.932617
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gesA_2
id: 1gesA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gesA_2/nostruct-align/1gesA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gesA_2/nostruct-align/1gesA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1gesA_2/nostruct-align/1gesA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-223/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.570557
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2rspA
id: 2rspA   alignment found: /projects/compbio/experiments/models.97/pdb/2r/2rspA/nostruct-align/2rspA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2r/2rspA/nostruct-align/2rspA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2r/2rspA/nostruct-align/2rspA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21048/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.449585
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lla_2
id: 1lla_2   alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lla_2/nostruct-align/1lla_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lla_2/nostruct-align/1lla_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1l/1lla_2/nostruct-align/1lla_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4136/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.458496
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gesA_3
id: 1gesA_3   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gesA_3/nostruct-align/1gesA_3.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gesA_3/nostruct-align/1gesA_3.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1gesA_3/nostruct-align/1gesA_3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12863/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.997559
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2omf
id: 2omf   alignment found: /projects/compbio/experiments/models.97/pdb/2o/2omf/nostruct-align/2omf.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2omf/nostruct-align/2omf.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2o/2omf/nostruct-align/2omf.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18019/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -21.782593
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ggtA_1
id: 1ggtA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1ggtA_1/nostruct-align/1ggtA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1ggtA_1/nostruct-align/1ggtA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1ggtA_1/nostruct-align/1ggtA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2092/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.019653
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2xis
id: 2xis   alignment found: /projects/compbio/experiments/models.97/pdb/2x/2xis/nostruct-align/2xis.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2x/2xis/nostruct-align/2xis.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2x/2xis/nostruct-align/2xis.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22262/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.116699
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ggtA_2
id: 1ggtA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1ggtA_2/nostruct-align/1ggtA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1ggtA_2/nostruct-align/1ggtA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1ggtA_2/nostruct-align/1ggtA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19290/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.264526
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ggtA_3
id: 1ggtA_3   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1ggtA_3/nostruct-align/1ggtA_3.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1ggtA_3/nostruct-align/1ggtA_3.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1ggtA_3/nostruct-align/1ggtA_3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15494/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.960571
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2bmhA
id: 2bmhA   alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bmhA/nostruct-align/2bmhA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bmhA/nostruct-align/2bmhA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2b/2bmhA/nostruct-align/2bmhA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22470/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.313599
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3dpvA
id: 3dpvA   alignment found: /projects/compbio/experiments/models.97/pdb/3d/3dpvA/nostruct-align/3dpvA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3d/3dpvA/nostruct-align/3dpvA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3d/3dpvA/nostruct-align/3dpvA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10656/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.915527
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lla_1
id: 1lla_1   alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lla_1/nostruct-align/1lla_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lla_1/nostruct-align/1lla_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1l/1lla_1/nostruct-align/1lla_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23366/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.435669
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2olbA
id: 2olbA   alignment found: /projects/compbio/experiments/models.97/pdb/2o/2olbA/nostruct-align/2olbA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2olbA/nostruct-align/2olbA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2o/2olbA/nostruct-align/2olbA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22203/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.642578
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ggtA_4
id: 1ggtA_4   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1ggtA_4/nostruct-align/1ggtA_4.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1ggtA_4/nostruct-align/1ggtA_4.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1ggtA_4/nostruct-align/1ggtA_4.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15564/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.621582
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ldm_2
id: 1ldm_2   alignment found: /projects/compbio4/experiments/models.97/domains/1l/1ldm_2/nostruct-align/1ldm_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1ldm_2/nostruct-align/1ldm_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1l/1ldm_2/nostruct-align/1ldm_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25578/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.769653
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ldm_1
id: 1ldm_1   alignment found: /projects/compbio4/experiments/models.97/domains/1l/1ldm_1/nostruct-align/1ldm_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1ldm_1/nostruct-align/1ldm_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1l/1ldm_1/nostruct-align/1ldm_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26773/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.380615
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1glaG_1
id: 1glaG_1   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1glaG_1/nostruct-align/1glaG_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1glaG_1/nostruct-align/1glaG_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1glaG_1/nostruct-align/1glaG_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32256/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.304565
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ldb_2
id: 1ldb_2   alignment found: /projects/compbio4/experiments/models.97/domains/1l/1ldb_2/nostruct-align/1ldb_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1ldb_2/nostruct-align/1ldb_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1l/1ldb_2/nostruct-align/1ldb_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18841/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.703613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2phlA
id: 2phlA   alignment found: /projects/compbio/experiments/models.97/pdb/2p/2phlA/nostruct-align/2phlA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2phlA/nostruct-align/2phlA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2p/2phlA/nostruct-align/2phlA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14528/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.489624
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1glaG_2
id: 1glaG_2   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1glaG_2/nostruct-align/1glaG_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1glaG_2/nostruct-align/1glaG_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1glaG_2/nostruct-align/1glaG_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14260/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.267578
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 7icd
id: 7icd   alignment found: /projects/compbio/experiments/models.97/pdb/7i/7icd/nostruct-align/7icd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/7i/7icd/nostruct-align/7icd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/7i/7icd/nostruct-align/7icd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9704/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.834595
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ldb_1
id: 1ldb_1   alignment found: /projects/compbio4/experiments/models.97/domains/1l/1ldb_1/nostruct-align/1ldb_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1ldb_1/nostruct-align/1ldb_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1l/1ldb_1/nostruct-align/1ldb_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13790/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.553589
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gln_1
id: 1gln_1   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gln_1/nostruct-align/1gln_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gln_1/nostruct-align/1gln_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1gln_1/nostruct-align/1gln_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-364/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.522705
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gln_2
id: 1gln_2   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gln_2/nostruct-align/1gln_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gln_2/nostruct-align/1gln_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1gln_2/nostruct-align/1gln_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25511/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.306641
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lam_2
id: 1lam_2   alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lam_2/nostruct-align/1lam_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lam_2/nostruct-align/1lam_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1l/1lam_2/nostruct-align/1lam_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30956/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.867554
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2mev2
id: 2mev2   alignment found: /projects/compbio/experiments/models.97/pdb/2m/2mev2/nostruct-align/2mev2.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2mev2/nostruct-align/2mev2.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2m/2mev2/nostruct-align/2mev2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6233/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.453613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lam_1
id: 1lam_1   alignment found: /projects/compbio4/experiments/models.97/domains/1l/1lam_1/nostruct-align/1lam_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1l/1lam_1/nostruct-align/1lam_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1l/1lam_1/nostruct-align/1lam_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19374/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.047607
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1glqA_1
id: 1glqA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1glqA_1/nostruct-align/1glqA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1glqA_1/nostruct-align/1glqA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1glqA_1/nostruct-align/1glqA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11796/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.022705
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1glqA_2
id: 1glqA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1glqA_2/nostruct-align/1glqA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1glqA_2/nostruct-align/1glqA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1glqA_2/nostruct-align/1glqA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27608/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.196655
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gof_1
id: 1gof_1   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gof_1/nostruct-align/1gof_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gof_1/nostruct-align/1gof_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1gof_1/nostruct-align/1gof_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-440/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.940674
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gof_2
id: 1gof_2   alignment found: /projects/compbio4/experiments/models.97/domains/1g/1gof_2/nostruct-align/1gof_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1g/1gof_2/nostruct-align/1gof_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1g/1gof_2/nostruct-align/1gof_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18859/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.403564
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1kfd_2
id: 1kfd_2   alignment found: /projects/compbio4/experiments/models.97/domains/1k/1kfd_2/nostruct-align/1kfd_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1k/1kfd_2/nostruct-align/1kfd_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1k/1kfd_2/nostruct-align/1kfd_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10511/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.235596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1thg
id: 1thg   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1thg/nostruct-align/1thg.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1thg/nostruct-align/1thg.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1thg/nostruct-align/1thg.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-527/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.631714
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1kfd_1
id: 1kfd_1   alignment found: /projects/compbio4/experiments/models.97/domains/1k/1kfd_1/nostruct-align/1kfd_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1k/1kfd_1/nostruct-align/1kfd_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1k/1kfd_1/nostruct-align/1kfd_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4144/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.699585
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hpm_2
id: 1hpm_2   alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hpm_2/nostruct-align/1hpm_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hpm_2/nostruct-align/1hpm_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1h/1hpm_2/nostruct-align/1hpm_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26980/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.639526
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1kapP_2
id: 1kapP_2   alignment found: /projects/compbio4/experiments/models.97/domains/1k/1kapP_2/nostruct-align/1kapP_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1k/1kapP_2/nostruct-align/1kapP_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1k/1kapP_2/nostruct-align/1kapP_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30532/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.739624
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vfbA
id: 1vfbA   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vfbA/nostruct-align/1vfbA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vfbA/nostruct-align/1vfbA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vfbA/nostruct-align/1vfbA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31632/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.842651
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1kapP_1
id: 1kapP_1   alignment found: /projects/compbio4/experiments/models.97/domains/1k/1kapP_1/nostruct-align/1kapP_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1k/1kapP_1/nostruct-align/1kapP_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1k/1kapP_1/nostruct-align/1kapP_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14024/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.738647
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1htr_1p1
id: 1htr_1p1   alignment found: /projects/compbio4/experiments/models.97/domains/1h/1htr_1p1/nostruct-align/1htr_1p1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1htr_1p1/nostruct-align/1htr_1p1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1h/1htr_1p1/nostruct-align/1htr_1p1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19787/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.213623
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ice_1a1
id: 1ice_1a1   alignment found: /projects/compbio4/experiments/models.97/domains/1i/1ice_1a1/nostruct-align/1ice_1a1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1i/1ice_1a1/nostruct-align/1ice_1a1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1i/1ice_1a1/nostruct-align/1ice_1a1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26797/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.433594
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hyhA_1
id: 1hyhA_1   alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hyhA_1/nostruct-align/1hyhA_1.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hyhA_1/nostruct-align/1hyhA_1.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1h/1hyhA_1/nostruct-align/1hyhA_1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24142/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.908569
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hyhA_2
id: 1hyhA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1h/1hyhA_2/nostruct-align/1hyhA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1h/1hyhA_2/nostruct-align/1hyhA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1h/1hyhA_2/nostruct-align/1hyhA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6857/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.790527
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aorA_2
id: 1aorA_2   alignment found: /projects/compbio4/experiments/models.97/domains/1a/1aorA_2/nostruct-align/1aorA_2.t99.a2m.gz
Reading parameter file /projects/compbio4/experiments/models.97/domains/1a/1aorA_2/nostruct-align/1aorA_2.t99-w0.5.mod
/projects/compbio4/experiments/models.97/domains/1a/1aorA_2/nostruct-align/1aorA_2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1404/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.952637
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bgeB
id: 1bgeB   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bgeB/nostruct-align/1bgeB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bgeB/nostruct-align/1bgeB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bgeB/nostruct-align/1bgeB.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-26492/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.152588
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c2rA
id: 1c2rA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c2rA/nostruct-align/1c2rA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c2rA/nostruct-align/1c2rA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c2rA/nostruct-align/1c2rA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19741/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.028564
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cid
id: 1cid   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cid/nostruct-align/1cid.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cid/nostruct-align/1cid.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cid/nostruct-align/1cid.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2756/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.670532
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cpcL
id: 1cpcL   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cpcL/nostruct-align/1cpcL.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cpcL/nostruct-align/1cpcL.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cpcL/nostruct-align/1cpcL.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4695/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.811523
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cauA
id: 1cauA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cauA/nostruct-align/1cauA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cauA/nostruct-align/1cauA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cauA/nostruct-align/1cauA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25294/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.516602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dbs
id: 1dbs   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dbs/nostruct-align/1dbs.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dbs/nostruct-align/1dbs.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dbs/nostruct-align/1dbs.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31665/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.446655
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dih
id: 1dih   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dih/nostruct-align/1dih.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dih/nostruct-align/1dih.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dih/nostruct-align/1dih.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13194/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.011597
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dsbA
id: 1dsbA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dsbA/nostruct-align/1dsbA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dsbA/nostruct-align/1dsbA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dsbA/nostruct-align/1dsbA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26379/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.710571
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cauB
id: 1cauB   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cauB/nostruct-align/1cauB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cauB/nostruct-align/1cauB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cauB/nostruct-align/1cauB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23282/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -15.737671
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dxtB
id: 1dxtB   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dxtB/nostruct-align/1dxtB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dxtB/nostruct-align/1dxtB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dxtB/nostruct-align/1dxtB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4649/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.727539
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1chrA
id: 1chrA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1chrA/nostruct-align/1chrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1chrA/nostruct-align/1chrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1chrA/nostruct-align/1chrA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28523/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.857666
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bfg
id: 1bfg   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bfg/nostruct-align/1bfg.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bfg/nostruct-align/1bfg.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bfg/nostruct-align/1bfg.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19568/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.496582
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bebA
id: 1bebA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bebA/nostruct-align/1bebA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bebA/nostruct-align/1bebA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bebA/nostruct-align/1bebA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10528/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.481567
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aac
id: 1aac   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aac/nostruct-align/1aac.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aac/nostruct-align/1aac.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aac/nostruct-align/1aac.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7660/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.366577
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1amm
id: 1amm   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amm/nostruct-align/1amm.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amm/nostruct-align/1amm.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1amm/nostruct-align/1amm.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25095/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.762573
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cpq
id: 1cpq   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cpq/nostruct-align/1cpq.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cpq/nostruct-align/1cpq.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cpq/nostruct-align/1cpq.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11481/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.457520
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bmdA
id: 1bmdA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bmdA/nostruct-align/1bmdA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bmdA/nostruct-align/1bmdA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bmdA/nostruct-align/1bmdA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32087/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.661499
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cyj
id: 1cyj   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cyj/nostruct-align/1cyj.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cyj/nostruct-align/1cyj.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cyj/nostruct-align/1cyj.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16031/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.241577
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cvl
id: 1cvl   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cvl/nostruct-align/1cvl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cvl/nostruct-align/1cvl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cvl/nostruct-align/1cvl.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29581/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.885620
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aa8A
id: 1aa8A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aa8A/nostruct-align/1aa8A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aa8A/nostruct-align/1aa8A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aa8A/nostruct-align/1aa8A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26608/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.200562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1din
id: 1din   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1din/nostruct-align/1din.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1din/nostruct-align/1din.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1din/nostruct-align/1din.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-151/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.890625
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dat
id: 1dat   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dat/nostruct-align/1dat.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dat/nostruct-align/1dat.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dat/nostruct-align/1dat.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19869/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.311523
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1drw
id: 1drw   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1drw/nostruct-align/1drw.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1drw/nostruct-align/1drw.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1drw/nostruct-align/1drw.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8323/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.046631
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dxy
id: 1dxy   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dxy/nostruct-align/1dxy.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dxy/nostruct-align/1dxy.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dxy/nostruct-align/1dxy.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13636/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.738647
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1epaA
id: 1epaA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1epaA/nostruct-align/1epaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1epaA/nostruct-align/1epaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1epaA/nostruct-align/1epaA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11074/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.481567
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ctn
id: 1ctn   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ctn/nostruct-align/1ctn.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ctn/nostruct-align/1ctn.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1ctn/nostruct-align/1ctn.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16543/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.333618
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cd8
id: 1cd8   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cd8/nostruct-align/1cd8.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cd8/nostruct-align/1cd8.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cd8/nostruct-align/1cd8.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20838/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.620605
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1broA
id: 1broA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1broA/nostruct-align/1broA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1broA/nostruct-align/1broA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1broA/nostruct-align/1broA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5845/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.324585
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1frpA
id: 1frpA   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1frpA/nostruct-align/1frpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1frpA/nostruct-align/1frpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1frpA/nostruct-align/1frpA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22803/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.567627
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cydA
id: 1cydA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cydA/nostruct-align/1cydA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cydA/nostruct-align/1cydA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cydA/nostruct-align/1cydA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10775/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.764648
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1eceA
id: 1eceA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eceA/nostruct-align/1eceA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eceA/nostruct-align/1eceA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1eceA/nostruct-align/1eceA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9969/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.016602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cfb
id: 1cfb   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cfb/nostruct-align/1cfb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cfb/nostruct-align/1cfb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cfb/nostruct-align/1cfb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31449/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.835571
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cdy
id: 1cdy   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdy/nostruct-align/1cdy.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdy/nostruct-align/1cdy.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cdy/nostruct-align/1cdy.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17303/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.862671
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1grx
id: 1grx   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1grx/nostruct-align/1grx.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1grx/nostruct-align/1grx.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1grx/nostruct-align/1grx.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23762/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.684570
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1efm
id: 1efm   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1efm/nostruct-align/1efm.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1efm/nostruct-align/1efm.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1efm/nostruct-align/1efm.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12101/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.398560
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hbq
id: 1hbq   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hbq/nostruct-align/1hbq.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hbq/nostruct-align/1hbq.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hbq/nostruct-align/1hbq.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9203/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.632690
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gnd
id: 1gnd   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gnd/nostruct-align/1gnd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gnd/nostruct-align/1gnd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gnd/nostruct-align/1gnd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17375/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.906616
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bjmA
id: 1bjmA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bjmA/nostruct-align/1bjmA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bjmA/nostruct-align/1bjmA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bjmA/nostruct-align/1bjmA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8694/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.018677
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bec
id: 1bec   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bec/nostruct-align/1bec.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bec/nostruct-align/1bec.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bec/nostruct-align/1bec.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6168/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.940552
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fc1A
id: 1fc1A   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fc1A/nostruct-align/1fc1A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fc1A/nostruct-align/1fc1A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fc1A/nostruct-align/1fc1A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22882/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.934570
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1imbA
id: 1imbA   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1imbA/nostruct-align/1imbA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1imbA/nostruct-align/1imbA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1imbA/nostruct-align/1imbA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17342/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.885620
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hnf
id: 1hnf   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hnf/nostruct-align/1hnf.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hnf/nostruct-align/1hnf.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hnf/nostruct-align/1hnf.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12961/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -15.168579
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1glcG
id: 1glcG   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1glcG/nostruct-align/1glcG.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1glcG/nostruct-align/1glcG.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1glcG/nostruct-align/1glcG.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18180/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.767578
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1kinA
id: 1kinA   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kinA/nostruct-align/1kinA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kinA/nostruct-align/1kinA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1kinA/nostruct-align/1kinA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7770/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.364502
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1kte
id: 1kte   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kte/nostruct-align/1kte.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kte/nostruct-align/1kte.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1kte/nostruct-align/1kte.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32288/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.519531
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gdhA
id: 1gdhA   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gdhA/nostruct-align/1gdhA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gdhA/nostruct-align/1gdhA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gdhA/nostruct-align/1gdhA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25327/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.002686
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hyhA
id: 1hyhA   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hyhA/nostruct-align/1hyhA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hyhA/nostruct-align/1hyhA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hyhA/nostruct-align/1hyhA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26002/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.772583
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lehA
id: 1lehA   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lehA/nostruct-align/1lehA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lehA/nostruct-align/1lehA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lehA/nostruct-align/1lehA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32111/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.312500
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1enp
id: 1enp   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1enp/nostruct-align/1enp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1enp/nostruct-align/1enp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1enp/nostruct-align/1enp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13239/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.986572
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gypA
id: 1gypA   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gypA/nostruct-align/1gypA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gypA/nostruct-align/1gypA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gypA/nostruct-align/1gypA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21552/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.034546
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gal
id: 1gal   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gal/nostruct-align/1gal.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gal/nostruct-align/1gal.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gal/nostruct-align/1gal.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8565/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.418579
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hrdA
id: 1hrdA   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hrdA/nostruct-align/1hrdA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hrdA/nostruct-align/1hrdA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hrdA/nostruct-align/1hrdA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32199/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.979492
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mtyB
id: 1mtyB   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mtyB/nostruct-align/1mtyB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mtyB/nostruct-align/1mtyB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mtyB/nostruct-align/1mtyB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15294/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.094604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mucA
id: 1mucA   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mucA/nostruct-align/1mucA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mucA/nostruct-align/1mucA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mucA/nostruct-align/1mucA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32106/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.954590
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1neu
id: 1neu   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1neu/nostruct-align/1neu.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1neu/nostruct-align/1neu.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1neu/nostruct-align/1neu.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27845/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.448608
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nfa
id: 1nfa   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nfa/nostruct-align/1nfa.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nfa/nostruct-align/1nfa.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nfa/nostruct-align/1nfa.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6053/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.576660
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cnv
id: 1cnv   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cnv/nostruct-align/1cnv.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cnv/nostruct-align/1cnv.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cnv/nostruct-align/1cnv.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28601/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.613647
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1kay
id: 1kay   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kay/nostruct-align/1kay.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kay/nostruct-align/1kay.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1kay/nostruct-align/1kay.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24139/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.174683
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1forL
id: 1forL   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1forL/nostruct-align/1forL.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1forL/nostruct-align/1forL.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1forL/nostruct-align/1forL.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14054/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.877563
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mhyD
id: 1mhyD   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mhyD/nostruct-align/1mhyD.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mhyD/nostruct-align/1mhyD.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mhyD/nostruct-align/1mhyD.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32243/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.031494
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ieaA
id: 1ieaA   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ieaA/nostruct-align/1ieaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ieaA/nostruct-align/1ieaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1ieaA/nostruct-align/1ieaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-728/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.876587
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nfkA
id: 1nfkA   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nfkA/nostruct-align/1nfkA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nfkA/nostruct-align/1nfkA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nfkA/nostruct-align/1nfkA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3452/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.521606
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hilB
id: 1hilB   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hilB/nostruct-align/1hilB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hilB/nostruct-align/1hilB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hilB/nostruct-align/1hilB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11153/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.181641
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1prs
id: 1prs   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1prs/nostruct-align/1prs.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1prs/nostruct-align/1prs.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1prs/nostruct-align/1prs.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.798584
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pmi
id: 1pmi   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pmi/nostruct-align/1pmi.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pmi/nostruct-align/1pmi.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pmi/nostruct-align/1pmi.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15036/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.747559
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1octC
id: 1octC   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1octC/nostruct-align/1octC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1octC/nostruct-align/1octC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1octC/nostruct-align/1octC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16179/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.076538
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pot
id: 1pot   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pot/nostruct-align/1pot.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pot/nostruct-align/1pot.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pot/nostruct-align/1pot.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1647/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.342529
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pov1
id: 1pov1   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pov1/nostruct-align/1pov1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pov1/nostruct-align/1pov1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pov1/nostruct-align/1pov1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12357/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.006592
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1omp
id: 1omp   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1omp/nostruct-align/1omp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1omp/nostruct-align/1omp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1omp/nostruct-align/1omp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1881/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.227661
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rcy
id: 1rcy   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rcy/nostruct-align/1rcy.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rcy/nostruct-align/1rcy.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rcy/nostruct-align/1rcy.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31459/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.817627
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1psdA
id: 1psdA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1psdA/nostruct-align/1psdA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1psdA/nostruct-align/1psdA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1psdA/nostruct-align/1psdA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11013/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.753662
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mlcB
id: 1mlcB   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mlcB/nostruct-align/1mlcB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mlcB/nostruct-align/1mlcB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mlcB/nostruct-align/1mlcB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21932/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.899658
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1svpA
id: 1svpA   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1svpA/nostruct-align/1svpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1svpA/nostruct-align/1svpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1svpA/nostruct-align/1svpA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20450/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.544556
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ryt
id: 1ryt   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1ryt/nostruct-align/1ryt.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1ryt/nostruct-align/1ryt.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1ryt/nostruct-align/1ryt.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22648/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.071533
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ptvA
id: 1ptvA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1ptvA/nostruct-align/1ptvA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1ptvA/nostruct-align/1ptvA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1ptvA/nostruct-align/1ptvA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-613/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.255493
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mfa
id: 1mfa   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mfa/nostruct-align/1mfa.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mfa/nostruct-align/1mfa.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mfa/nostruct-align/1mfa.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24719/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.352539
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tit
id: 1tit   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tit/nostruct-align/1tit.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tit/nostruct-align/1tit.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tit/nostruct-align/1tit.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28488/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.303589
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1thx
id: 1thx   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1thx/nostruct-align/1thx.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1thx/nostruct-align/1thx.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1thx/nostruct-align/1thx.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1152/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.116577
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pbe
id: 1pbe   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pbe/nostruct-align/1pbe.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pbe/nostruct-align/1pbe.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pbe/nostruct-align/1pbe.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23153/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.010620
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nhp
id: 1nhp   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nhp/nostruct-align/1nhp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nhp/nostruct-align/1nhp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nhp/nostruct-align/1nhp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25858/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.358643
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vhrA
id: 1vhrA   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vhrA/nostruct-align/1vhrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vhrA/nostruct-align/1vhrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vhrA/nostruct-align/1vhrA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3246/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.177612
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1wit
id: 1wit   alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wit/nostruct-align/1wit.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wit/nostruct-align/1wit.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1w/1wit/nostruct-align/1wit.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31207/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.651611
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1xel
id: 1xel   alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xel/nostruct-align/1xel.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xel/nostruct-align/1xel.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1x/1xel/nostruct-align/1xel.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25686/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.755615
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vcaA
id: 1vcaA   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vcaA/nostruct-align/1vcaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vcaA/nostruct-align/1vcaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vcaA/nostruct-align/1vcaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3563/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.276611
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qorA
id: 1qorA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qorA/nostruct-align/1qorA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qorA/nostruct-align/1qorA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qorA/nostruct-align/1qorA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27524/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.798584
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pbgA
id: 1pbgA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pbgA/nostruct-align/1pbgA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pbgA/nostruct-align/1pbgA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pbgA/nostruct-align/1pbgA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-13005/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.247559
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1yasA
id: 1yasA   alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yasA/nostruct-align/1yasA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yasA/nostruct-align/1yasA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1y/1yasA/nostruct-align/1yasA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30880/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.365601
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2azaA
id: 2azaA   alignment found: /projects/compbio/experiments/models.97/pdb/2a/2azaA/nostruct-align/2azaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2azaA/nostruct-align/2azaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2a/2azaA/nostruct-align/2azaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3577/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.045532
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ycc
id: 1ycc   alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ycc/nostruct-align/1ycc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ycc/nostruct-align/1ycc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1y/1ycc/nostruct-align/1ycc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9244/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.545654
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1trb
id: 1trb   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1trb/nostruct-align/1trb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1trb/nostruct-align/1trb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1trb/nostruct-align/1trb.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7104/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -16.326660
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ytw
id: 1ytw   alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ytw/nostruct-align/1ytw.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ytw/nostruct-align/1ytw.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1y/1ytw/nostruct-align/1ytw.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26194/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.370605
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1zin
id: 1zin   alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zin/nostruct-align/1zin.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zin/nostruct-align/1zin.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1z/1zin/nostruct-align/1zin.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31675/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.428589
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2bb2
id: 2bb2   alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bb2/nostruct-align/2bb2.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bb2/nostruct-align/2bb2.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2b/2bb2/nostruct-align/2bb2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28195/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.921631
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2i1b
id: 2i1b   alignment found: /projects/compbio/experiments/models.97/pdb/2i/2i1b/nostruct-align/2i1b.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2i/2i1b/nostruct-align/2i1b.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2i/2i1b/nostruct-align/2i1b.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-729/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.885620
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2cmd
id: 2cmd   alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cmd/nostruct-align/2cmd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cmd/nostruct-align/2cmd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2c/2cmd/nostruct-align/2cmd.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27004/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.715576
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2gdm
id: 2gdm   alignment found: /projects/compbio/experiments/models.97/pdb/2g/2gdm/nostruct-align/2gdm.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2g/2gdm/nostruct-align/2gdm.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2g/2gdm/nostruct-align/2gdm.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17312/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.917603
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2btfA
id: 2btfA   alignment found: /projects/compbio/experiments/models.97/pdb/2b/2btfA/nostruct-align/2btfA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2btfA/nostruct-align/2btfA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2b/2btfA/nostruct-align/2btfA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29181/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.137573
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2hbg
id: 2hbg   alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hbg/nostruct-align/2hbg.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hbg/nostruct-align/2hbg.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2h/2hbg/nostruct-align/2hbg.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3618/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.911621
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2myr
id: 2myr   alignment found: /projects/compbio/experiments/models.97/pdb/2m/2myr/nostruct-align/2myr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2myr/nostruct-align/2myr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2m/2myr/nostruct-align/2myr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19790/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.140503
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2mnr
id: 2mnr   alignment found: /projects/compbio/experiments/models.97/pdb/2m/2mnr/nostruct-align/2mnr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2mnr/nostruct-align/2mnr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2m/2mnr/nostruct-align/2mnr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12218/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.743652
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2pgd
id: 2pgd   alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pgd/nostruct-align/2pgd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pgd/nostruct-align/2pgd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2p/2pgd/nostruct-align/2pgd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-548/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.520508
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fds
id: 1fds   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fds/nostruct-align/1fds.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fds/nostruct-align/1fds.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fds/nostruct-align/1fds.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16370/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.799683
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2sga
id: 2sga   alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sga/nostruct-align/2sga.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sga/nostruct-align/2sga.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2s/2sga/nostruct-align/2sga.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23206/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.208618
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1try
id: 1try   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1try/nostruct-align/1try.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1try/nostruct-align/1try.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1try/nostruct-align/1try.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16441/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.924683
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2aaa
id: 2aaa   alignment found: /projects/compbio/experiments/models.97/pdb/2a/2aaa/nostruct-align/2aaa.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2aaa/nostruct-align/2aaa.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2a/2aaa/nostruct-align/2aaa.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16081/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -17.626587
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3hhrB
id: 3hhrB   alignment found: /projects/compbio/experiments/models.97/pdb/3h/3hhrB/nostruct-align/3hhrB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3h/3hhrB/nostruct-align/3hhrB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3h/3hhrB/nostruct-align/3hhrB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27875/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.698608
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4gcr
id: 4gcr   alignment found: /projects/compbio/experiments/models.97/pdb/4g/4gcr/nostruct-align/4gcr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/4g/4gcr/nostruct-align/4gcr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/4g/4gcr/nostruct-align/4gcr.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20294/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.009521
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fcdA
id: 1fcdA   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fcdA/nostruct-align/1fcdA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fcdA/nostruct-align/1fcdA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fcdA/nostruct-align/1fcdA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10836/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.756592
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aozA
id: 1aozA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aozA/nostruct-align/1aozA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aozA/nostruct-align/1aozA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aozA/nostruct-align/1aozA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12490/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -17.777588
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4enl
id: 4enl   alignment found: /projects/compbio/experiments/models.97/pdb/4e/4enl/nostruct-align/4enl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/4e/4enl/nostruct-align/4enl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/4e/4enl/nostruct-align/4enl.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3465/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.685669
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ohxA
id: 2ohxA   alignment found: /projects/compbio/experiments/models.97/pdb/2o/2ohxA/nostruct-align/2ohxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2ohxA/nostruct-align/2ohxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2o/2ohxA/nostruct-align/2ohxA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20147/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.277588
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3cox
id: 3cox   alignment found: /projects/compbio/experiments/models.97/pdb/3c/3cox/nostruct-align/3cox.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3cox/nostruct-align/3cox.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3c/3cox/nostruct-align/3cox.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3805/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.746582
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3ladA
id: 3ladA   alignment found: /projects/compbio/experiments/models.97/pdb/3l/3ladA/nostruct-align/3ladA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3l/3ladA/nostruct-align/3ladA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3l/3ladA/nostruct-align/3ladA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27873/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.979614
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3grs
id: 3grs   alignment found: /projects/compbio/experiments/models.97/pdb/3g/3grs/nostruct-align/3grs.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3g/3grs/nostruct-align/3grs.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3g/3grs/nostruct-align/3grs.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27030/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.800537
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ospL
id: 1ospL   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1ospL/nostruct-align/1ospL.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1ospL/nostruct-align/1ospL.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1ospL/nostruct-align/1ospL.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14810/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.880493
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mlbA
id: 1mlbA   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mlbA/nostruct-align/1mlbA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mlbA/nostruct-align/1mlbA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mlbA/nostruct-align/1mlbA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11050/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.886597
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tcrA
id: 1tcrA   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tcrA/nostruct-align/1tcrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tcrA/nostruct-align/1tcrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tcrA/nostruct-align/1tcrA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31205/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.448608
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tetL
id: 1tetL   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tetL/nostruct-align/1tetL.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tetL/nostruct-align/1tetL.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tetL/nostruct-align/1tetL.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5430/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.066650
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ospH
id: 1ospH   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1ospH/nostruct-align/1ospH.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1ospH/nostruct-align/1ospH.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1ospH/nostruct-align/1ospH.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30444/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.735596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2tmdA
id: 2tmdA   alignment found: /projects/compbio/experiments/models.97/pdb/2t/2tmdA/nostruct-align/2tmdA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2tmdA/nostruct-align/2tmdA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2t/2tmdA/nostruct-align/2tmdA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29306/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.998657
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 8fabB
id: 8fabB   alignment found: /projects/compbio/experiments/models.97/pdb/8f/8fabB/nostruct-align/8fabB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/8f/8fabB/nostruct-align/8fabB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/8f/8fabB/nostruct-align/8fabB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23390/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.704590
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rthA
id: 1rthA   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rthA/nostruct-align/1rthA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rthA/nostruct-align/1rthA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rthA/nostruct-align/1rthA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8211/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.608643
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gpl
id: 1gpl   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gpl/nostruct-align/1gpl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gpl/nostruct-align/1gpl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gpl/nostruct-align/1gpl.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25692/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.495605
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1kveA
id: 1kveA   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kveA/nostruct-align/1kveA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kveA/nostruct-align/1kveA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1kveA/nostruct-align/1kveA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21077/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.214600
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3chbD
id: 3chbD   alignment found: /projects/compbio/experiments/models.97/pdb/3c/3chbD/nostruct-align/3chbD.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3chbD/nostruct-align/3chbD.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3c/3chbD/nostruct-align/3chbD.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19815/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.118530
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3ebx
id: 3ebx   alignment found: /projects/compbio/experiments/models.97/pdb/3e/3ebx/nostruct-align/3ebx.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3e/3ebx/nostruct-align/3ebx.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3e/3ebx/nostruct-align/3ebx.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6852/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.622559
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1kveB
id: 1kveB   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kveB/nostruct-align/1kveB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kveB/nostruct-align/1kveB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1kveB/nostruct-align/1kveB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8791/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.505615
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2erl
id: 2erl   alignment found: /projects/compbio/experiments/models.97/pdb/2e/2erl/nostruct-align/2erl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2erl/nostruct-align/2erl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2e/2erl/nostruct-align/2erl.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29390/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.373657
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1kuh
id: 1kuh   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kuh/nostruct-align/1kuh.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kuh/nostruct-align/1kuh.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1kuh/nostruct-align/1kuh.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2993/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.328613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bteA
id: 1bteA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bteA/nostruct-align/1bteA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bteA/nostruct-align/1bteA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bteA/nostruct-align/1bteA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3219/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.487671
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c52
id: 1c52   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c52/nostruct-align/1c52.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c52/nostruct-align/1c52.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c52/nostruct-align/1c52.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30475/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.598633
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2utgA
id: 2utgA   alignment found: /projects/compbio/experiments/models.97/pdb/2u/2utgA/nostruct-align/2utgA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2u/2utgA/nostruct-align/2utgA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2u/2utgA/nostruct-align/2utgA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27378/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.124512
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1burS
id: 1burS   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1burS/nostruct-align/1burS.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1burS/nostruct-align/1burS.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1burS/nostruct-align/1burS.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8745/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.175659
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ilk
id: 2ilk   alignment found: /projects/compbio/experiments/models.97/pdb/2i/2ilk/nostruct-align/2ilk.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2i/2ilk/nostruct-align/2ilk.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2i/2ilk/nostruct-align/2ilk.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32619/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.062622
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1htrP
id: 1htrP   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1htrP/nostruct-align/1htrP.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1htrP/nostruct-align/1htrP.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1htrP/nostruct-align/1htrP.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23664/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.261597
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rb9
id: 1rb9   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rb9/nostruct-align/1rb9.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rb9/nostruct-align/1rb9.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rb9/nostruct-align/1rb9.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14624/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.136597
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1uroA
id: 1uroA   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uroA/nostruct-align/1uroA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uroA/nostruct-align/1uroA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1uroA/nostruct-align/1uroA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9632/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.148560
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 5icb
id: 5icb   alignment found: /projects/compbio/experiments/models.97/pdb/5i/5icb/nostruct-align/5icb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/5i/5icb/nostruct-align/5icb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/5i/5icb/nostruct-align/5icb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21580/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.636597
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ixh
id: 1ixh   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ixh/nostruct-align/1ixh.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ixh/nostruct-align/1ixh.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1ixh/nostruct-align/1ixh.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30536/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -15.175659
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pgtA
id: 1pgtA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pgtA/nostruct-align/1pgtA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pgtA/nostruct-align/1pgtA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pgtA/nostruct-align/1pgtA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3200/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.700684
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1thv
id: 1thv   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1thv/nostruct-align/1thv.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1thv/nostruct-align/1thv.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1thv/nostruct-align/1thv.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25201/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.178589
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 6cel
id: 6cel   alignment found: /projects/compbio/experiments/models.97/pdb/6c/6cel/nostruct-align/6cel.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/6c/6cel/nostruct-align/6cel.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/6c/6cel/nostruct-align/6cel.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4068/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.423584
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dxgA
id: 1dxgA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dxgA/nostruct-align/1dxgA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dxgA/nostruct-align/1dxgA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dxgA/nostruct-align/1dxgA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20488/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.292603
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bk7A
id: 1bk7A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bk7A/nostruct-align/1bk7A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bk7A/nostruct-align/1bk7A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bk7A/nostruct-align/1bk7A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20149/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.089600
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2pvb
id: 2pvb   alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pvb/nostruct-align/2pvb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pvb/nostruct-align/2pvb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2p/2pvb/nostruct-align/2pvb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22317/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.568604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1amf
id: 1amf   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amf/nostruct-align/1amf.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amf/nostruct-align/1amf.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1amf/nostruct-align/1amf.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28983/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.891602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1wfbA
id: 1wfbA   alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wfbA/nostruct-align/1wfbA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wfbA/nostruct-align/1wfbA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1w/1wfbA/nostruct-align/1wfbA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17452/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.889648
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gci
id: 1gci   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gci/nostruct-align/1gci.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gci/nostruct-align/1gci.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gci/nostruct-align/1gci.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3956/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -16.181519
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lam
id: 1lam   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lam/nostruct-align/1lam.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lam/nostruct-align/1lam.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lam/nostruct-align/1lam.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11838/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.276611
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a4iA
id: 1a4iA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a4iA/nostruct-align/1a4iA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a4iA/nostruct-align/1a4iA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a4iA/nostruct-align/1a4iA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32533/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.185547
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1orc
id: 1orc   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1orc/nostruct-align/1orc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1orc/nostruct-align/1orc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1orc/nostruct-align/1orc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16023/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.338623
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2pth
id: 2pth   alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pth/nostruct-align/2pth.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pth/nostruct-align/2pth.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2p/2pth/nostruct-align/2pth.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27739/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.508545
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nkd
id: 1nkd   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nkd/nostruct-align/1nkd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nkd/nostruct-align/1nkd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nkd/nostruct-align/1nkd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20233/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.400635
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nlr
id: 1nlr   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nlr/nostruct-align/1nlr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nlr/nostruct-align/1nlr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nlr/nostruct-align/1nlr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14065/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.464600
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a7s
id: 1a7s   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a7s/nostruct-align/1a7s.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a7s/nostruct-align/1a7s.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a7s/nostruct-align/1a7s.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7438/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.730591
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2tpsA
id: 2tpsA   alignment found: /projects/compbio/experiments/models.97/pdb/2t/2tpsA/nostruct-align/2tpsA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2tpsA/nostruct-align/2tpsA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2t/2tpsA/nostruct-align/2tpsA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-420/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.970581
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1edmB
id: 1edmB   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1edmB/nostruct-align/1edmB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1edmB/nostruct-align/1edmB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1edmB/nostruct-align/1edmB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25029/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.143555
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tph1
id: 1tph1   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tph1/nostruct-align/1tph1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tph1/nostruct-align/1tph1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tph1/nostruct-align/1tph1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18848/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.202637
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1koe
id: 1koe   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1koe/nostruct-align/1koe.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1koe/nostruct-align/1koe.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1koe/nostruct-align/1koe.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2432/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.540527
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3lzt
id: 3lzt   alignment found: /projects/compbio/experiments/models.97/pdb/3l/3lzt/nostruct-align/3lzt.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3l/3lzt/nostruct-align/3lzt.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3l/3lzt/nostruct-align/3lzt.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23912/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.490601
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cjwA
id: 1cjwA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cjwA/nostruct-align/1cjwA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cjwA/nostruct-align/1cjwA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cjwA/nostruct-align/1cjwA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30336/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.748535
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tyv
id: 1tyv   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tyv/nostruct-align/1tyv.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tyv/nostruct-align/1tyv.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tyv/nostruct-align/1tyv.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22469/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -16.315674
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sbwI
id: 1sbwI   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sbwI/nostruct-align/1sbwI.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sbwI/nostruct-align/1sbwI.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sbwI/nostruct-align/1sbwI.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14995/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -4.559570
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bd8
id: 1bd8   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bd8/nostruct-align/1bd8.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bd8/nostruct-align/1bd8.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bd8/nostruct-align/1bd8.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15482/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.567505
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bs9
id: 1bs9   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bs9/nostruct-align/1bs9.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bs9/nostruct-align/1bs9.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bs9/nostruct-align/1bs9.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17640/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.640625
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b8oA
id: 1b8oA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8oA/nostruct-align/1b8oA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8oA/nostruct-align/1b8oA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b8oA/nostruct-align/1b8oA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22792/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.507690
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2msbA
id: 2msbA   alignment found: /projects/compbio/experiments/models.97/pdb/2m/2msbA/nostruct-align/2msbA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2msbA/nostruct-align/2msbA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2m/2msbA/nostruct-align/2msbA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16542/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.085571
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b5eA
id: 1b5eA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b5eA/nostruct-align/1b5eA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b5eA/nostruct-align/1b5eA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b5eA/nostruct-align/1b5eA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4160/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.569580
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dcs
id: 1dcs   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dcs/nostruct-align/1dcs.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dcs/nostruct-align/1dcs.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dcs/nostruct-align/1dcs.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6378/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.771606
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1anf
id: 1anf   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1anf/nostruct-align/1anf.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1anf/nostruct-align/1anf.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1anf/nostruct-align/1anf.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22430/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.830566
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 9wgaA
id: 9wgaA   alignment found: /projects/compbio/experiments/models.97/pdb/9w/9wgaA/nostruct-align/9wgaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/9w/9wgaA/nostruct-align/9wgaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/9w/9wgaA/nostruct-align/9wgaA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22801/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.294678
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fehA
id: 1fehA   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fehA/nostruct-align/1fehA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fehA/nostruct-align/1fehA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fehA/nostruct-align/1fehA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20244/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.344604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qnf
id: 1qnf   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qnf/nostruct-align/1qnf.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qnf/nostruct-align/1qnf.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qnf/nostruct-align/1qnf.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8611/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.482666
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1awd
id: 1awd   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1awd/nostruct-align/1awd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1awd/nostruct-align/1awd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1awd/nostruct-align/1awd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17074/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.730591
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2eng
id: 2eng   alignment found: /projects/compbio/experiments/models.97/pdb/2e/2eng/nostruct-align/2eng.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2eng/nostruct-align/2eng.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2e/2eng/nostruct-align/2eng.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3479/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.588623
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1jhgA
id: 1jhgA   alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jhgA/nostruct-align/1jhgA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jhgA/nostruct-align/1jhgA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1j/1jhgA/nostruct-align/1jhgA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5117/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.664551
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3cyr
id: 3cyr   alignment found: /projects/compbio/experiments/models.97/pdb/3c/3cyr/nostruct-align/3cyr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3cyr/nostruct-align/3cyr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3c/3cyr/nostruct-align/3cyr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9386/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.848633
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a68
id: 1a68   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a68/nostruct-align/1a68.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a68/nostruct-align/1a68.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a68/nostruct-align/1a68.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22909/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.821655
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lcl
id: 1lcl   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lcl/nostruct-align/1lcl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lcl/nostruct-align/1lcl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lcl/nostruct-align/1lcl.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5396/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.057617
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lkkA
id: 1lkkA   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lkkA/nostruct-align/1lkkA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lkkA/nostruct-align/1lkkA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lkkA/nostruct-align/1lkkA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22507/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.413696
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4tsvA
id: 4tsvA   alignment found: /projects/compbio/experiments/models.97/pdb/4t/4tsvA/nostruct-align/4tsvA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/4t/4tsvA/nostruct-align/4tsvA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/4t/4tsvA/nostruct-align/4tsvA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7438/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.070679
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nls
id: 1nls   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nls/nostruct-align/1nls.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nls/nostruct-align/1nls.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nls/nostruct-align/1nls.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13945/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.914551
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b5fB
id: 1b5fB   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b5fB/nostruct-align/1b5fB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b5fB/nostruct-align/1b5fB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b5fB/nostruct-align/1b5fB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4179/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.940552
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tag
id: 1tag   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tag/nostruct-align/1tag.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tag/nostruct-align/1tag.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tag/nostruct-align/1tag.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29266/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.038696
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b5fA
id: 1b5fA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b5fA/nostruct-align/1b5fA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b5fA/nostruct-align/1b5fA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b5fA/nostruct-align/1b5fA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4322/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.520630
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2nacA
id: 2nacA   alignment found: /projects/compbio/experiments/models.97/pdb/2n/2nacA/nostruct-align/2nacA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2n/2nacA/nostruct-align/2nacA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2n/2nacA/nostruct-align/2nacA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9209/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.909546
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ceqA
id: 1ceqA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ceqA/nostruct-align/1ceqA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ceqA/nostruct-align/1ceqA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1ceqA/nostruct-align/1ceqA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4193/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.916626
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1uae
id: 1uae   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uae/nostruct-align/1uae.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uae/nostruct-align/1uae.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1uae/nostruct-align/1uae.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9861/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.313599
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a12A
id: 1a12A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a12A/nostruct-align/1a12A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a12A/nostruct-align/1a12A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a12A/nostruct-align/1a12A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15380/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.050659
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pidB
id: 1pidB   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pidB/nostruct-align/1pidB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pidB/nostruct-align/1pidB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pidB/nostruct-align/1pidB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18724/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.969604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pidA
id: 1pidA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pidA/nostruct-align/1pidA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pidA/nostruct-align/1pidA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pidA/nostruct-align/1pidA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16968/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -4.989624
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3vub
id: 3vub   alignment found: /projects/compbio/experiments/models.97/pdb/3v/3vub/nostruct-align/3vub.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3v/3vub/nostruct-align/3vub.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3v/3vub/nostruct-align/3vub.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11967/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.729614
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a2pA
id: 1a2pA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a2pA/nostruct-align/1a2pA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a2pA/nostruct-align/1a2pA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a2pA/nostruct-align/1a2pA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6792/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.287598
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1kpeA
id: 1kpeA   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kpeA/nostruct-align/1kpeA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kpeA/nostruct-align/1kpeA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1kpeA/nostruct-align/1kpeA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1442/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.152588
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rzl
id: 1rzl   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rzl/nostruct-align/1rzl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rzl/nostruct-align/1rzl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rzl/nostruct-align/1rzl.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14102/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.664673
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vqb
id: 1vqb   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vqb/nostruct-align/1vqb.t99.a2m.gz
ScoreLibT99::make_wt_model: model file older than alignment: building /projects/compbio/experiments/models.97/pdb/1v/1vqb/nostruct-align/1vqb.t99-w0.5.mod from file /projects/compbio/experiments/models.97/pdb/1v/1vqb/nostruct-align/1vqb.t99.a2m.gz
Reading /projects/compbio/bin/scripts/sam-t99.conf

@@@@ chgrp protein /projects/compbio/tmp/tmp-build-weighted-model-beta-24048


@@@@ uniqueseq /projects/compbio/tmp/tmp-build-weighted-model-beta-24048/tmp -alignfile /projects/compbio/experiments/models.97/pdb/1v/1vqb/nostruct-align/1vqb.t99.a2m.gz \
    		-a protein -percent_id 0.8
SAM: uniqueseq v3.1b (February 24, 1999) compiled 04/18/00_11:44:50
Reading alignment file /projects/compbio/experiments/models.97/pdb/1v/1vqb/nostruct-align/1vqb.t99.a2m.gz (22 sequences, 86 columns) as A2M alignment.
Writing sequence output to /projects/compbio/tmp/tmp-build-weighted-model-beta-24048/tmp.a2m.
Dropping 1 (of 22) duplicate sequences with differing IDs
Dropping 18 (of 22) sequences with > 80.0% id
3 sequences left after dropping 19 of 22 sequences.


@@@@ modelfromalign /projects/compbio/tmp/tmp-build-weighted-model-beta-24048/tmp -alignfile /projects/compbio/tmp/tmp-build-weighted-model-beta-24048/tmp.a2m \
		-insert /projects/compbio/lib/fssp-trained.regularizer \
		-ins_jump_conf 1 \
		-match_jump_conf 1 \
		-del_jump_conf 1 \
		-prior_library /projects/compbio/lib/recode3.20comp \
		-binary_output 1  -a protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10
Reading parameter file /projects/compbio/lib/fssp-trained.regularizer
/projects/compbio/lib/fssp-trained.regularizer(1):  Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP
SAM: modelfromalign v3.1b (February 24, 1999) compiled 04/18/00_11:44:13
Reading alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-24048/tmp.a2m (3 sequences, 86 columns) as A2M alignment.


@@@@ cp -f /projects/compbio/tmp/tmp-build-weighted-model-beta-24048/tmp.mod /projects/compbio/experiments/models.97/pdb/1v/1vqb/nostruct-align/1vqb.t99-w0.5.mod


@@@@ rm -rf /projects/compbio/tmp/tmp-build-weighted-model-beta-24048 </dev/null
Reading /projects/compbio/bin/scripts/sam-t99.confReading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vqb/nostruct-align/1vqb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vqb/nostruct-align/1vqb.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-24048/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.109497
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2acy
id: 2acy   alignment found: /projects/compbio/experiments/models.97/pdb/2a/2acy/nostruct-align/2acy.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2acy/nostruct-align/2acy.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2a/2acy/nostruct-align/2acy.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16215/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.413574
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1msi
id: 1msi   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1msi/nostruct-align/1msi.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1msi/nostruct-align/1msi.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1msi/nostruct-align/1msi.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22660/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.414551
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ttbA
id: 1ttbA   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1ttbA/nostruct-align/1ttbA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1ttbA/nostruct-align/1ttbA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1ttbA/nostruct-align/1ttbA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2730/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.746582
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1unkA
id: 1unkA   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1unkA/nostruct-align/1unkA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1unkA/nostruct-align/1unkA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1unkA/nostruct-align/1unkA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1880/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.904663
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bkjA
id: 1bkjA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkjA/nostruct-align/1bkjA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkjA/nostruct-align/1bkjA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bkjA/nostruct-align/1bkjA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12066/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.140625
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 6gsvA
id: 6gsvA   alignment found: /projects/compbio/experiments/models.97/pdb/6g/6gsvA/nostruct-align/6gsvA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/6g/6gsvA/nostruct-align/6gsvA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/6g/6gsvA/nostruct-align/6gsvA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24489/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.396606
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pdo
id: 1pdo   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pdo/nostruct-align/1pdo.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pdo/nostruct-align/1pdo.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pdo/nostruct-align/1pdo.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7308/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.901611
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1kid
id: 1kid   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kid/nostruct-align/1kid.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kid/nostruct-align/1kid.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1kid/nostruct-align/1kid.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3975/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.408569
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1kp6A
id: 1kp6A   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kp6A/nostruct-align/1kp6A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kp6A/nostruct-align/1kp6A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1kp6A/nostruct-align/1kp6A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26518/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.769653
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a8d
id: 1a8d   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8d/nostruct-align/1a8d.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8d/nostruct-align/1a8d.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a8d/nostruct-align/1a8d.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20084/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.938599
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aqb
id: 1aqb   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aqb/nostruct-align/1aqb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aqb/nostruct-align/1aqb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aqb/nostruct-align/1aqb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4788/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.577637
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a8e
id: 1a8e   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8e/nostruct-align/1a8e.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8e/nostruct-align/1a8e.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a8e/nostruct-align/1a8e.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28623/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.424683
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1avwB
id: 1avwB   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avwB/nostruct-align/1avwB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avwB/nostruct-align/1avwB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1avwB/nostruct-align/1avwB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21339/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.322510
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1afwA
id: 1afwA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1afwA/nostruct-align/1afwA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1afwA/nostruct-align/1afwA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1afwA/nostruct-align/1afwA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24269/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.127563
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1moq
id: 1moq   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1moq/nostruct-align/1moq.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1moq/nostruct-align/1moq.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1moq/nostruct-align/1moq.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-405/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.982544
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1atzA
id: 1atzA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1atzA/nostruct-align/1atzA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1atzA/nostruct-align/1atzA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1atzA/nostruct-align/1atzA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1233/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.292603
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sluA
id: 1sluA   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sluA/nostruct-align/1sluA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sluA/nostruct-align/1sluA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sluA/nostruct-align/1sluA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21068/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.225586
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gcmA
id: 1gcmA   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gcmA/nostruct-align/1gcmA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gcmA/nostruct-align/1gcmA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gcmA/nostruct-align/1gcmA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20877/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.594604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ahtL
id: 1ahtL   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ahtL/nostruct-align/1ahtL.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ahtL/nostruct-align/1ahtL.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ahtL/nostruct-align/1ahtL.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6916/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.684570
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2a0b
id: 2a0b   alignment found: /projects/compbio/experiments/models.97/pdb/2a/2a0b/nostruct-align/2a0b.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2a0b/nostruct-align/2a0b.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2a/2a0b/nostruct-align/2a0b.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30078/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.361572
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2tgi
id: 2tgi   alignment found: /projects/compbio/experiments/models.97/pdb/2t/2tgi/nostruct-align/2tgi.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2tgi/nostruct-align/2tgi.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2t/2tgi/nostruct-align/2tgi.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14410/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.785645
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1msk
id: 1msk   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1msk/nostruct-align/1msk.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1msk/nostruct-align/1msk.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1msk/nostruct-align/1msk.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31231/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.455566
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bm8
id: 1bm8   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bm8/nostruct-align/1bm8.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bm8/nostruct-align/1bm8.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bm8/nostruct-align/1bm8.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23756/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.207520
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4fiv
id: 4fiv   alignment found: /projects/compbio/experiments/models.97/pdb/4f/4fiv/nostruct-align/4fiv.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/4f/4fiv/nostruct-align/4fiv.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/4f/4fiv/nostruct-align/4fiv.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1002/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.249634
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a7w
id: 1a7w   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a7w/nostruct-align/1a7w.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a7w/nostruct-align/1a7w.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a7w/nostruct-align/1a7w.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2197/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.782593
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vfyA
id: 1vfyA   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vfyA/nostruct-align/1vfyA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vfyA/nostruct-align/1vfyA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vfyA/nostruct-align/1vfyA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-371/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.768677
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ako
id: 1ako   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ako/nostruct-align/1ako.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ako/nostruct-align/1ako.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ako/nostruct-align/1ako.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25977/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.262573
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ctc
id: 2ctc   alignment found: /projects/compbio/experiments/models.97/pdb/2c/2ctc/nostruct-align/2ctc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2ctc/nostruct-align/2ctc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2c/2ctc/nostruct-align/2ctc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12521/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.285645
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bu7A
id: 1bu7A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bu7A/nostruct-align/1bu7A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bu7A/nostruct-align/1bu7A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bu7A/nostruct-align/1bu7A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25461/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.267578
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2cuaA
id: 2cuaA   alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cuaA/nostruct-align/2cuaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cuaA/nostruct-align/2cuaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2c/2cuaA/nostruct-align/2cuaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25018/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.575562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qgwA
id: 1qgwA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qgwA/nostruct-align/1qgwA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qgwA/nostruct-align/1qgwA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qgwA/nostruct-align/1qgwA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15149/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.502686
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3ezmA
id: 3ezmA   alignment found: /projects/compbio/experiments/models.97/pdb/3e/3ezmA/nostruct-align/3ezmA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3e/3ezmA/nostruct-align/3ezmA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3e/3ezmA/nostruct-align/3ezmA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9608/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.008667
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2hlcA
id: 2hlcA   alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hlcA/nostruct-align/2hlcA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hlcA/nostruct-align/2hlcA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2h/2hlcA/nostruct-align/2hlcA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25062/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.636597
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3nul
id: 3nul   alignment found: /projects/compbio/experiments/models.97/pdb/3n/3nul/nostruct-align/3nul.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3n/3nul/nostruct-align/3nul.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3n/3nul/nostruct-align/3nul.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9522/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.982666
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vie
id: 1vie   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vie/nostruct-align/1vie.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vie/nostruct-align/1vie.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vie/nostruct-align/1vie.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29777/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.705566
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qgwC
id: 1qgwC   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qgwC/nostruct-align/1qgwC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qgwC/nostruct-align/1qgwC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qgwC/nostruct-align/1qgwC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25233/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.702637
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nwpA
id: 1nwpA   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nwpA/nostruct-align/1nwpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nwpA/nostruct-align/1nwpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nwpA/nostruct-align/1nwpA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25515/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.806519
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1wab
id: 1wab   alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wab/nostruct-align/1wab.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wab/nostruct-align/1wab.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1w/1wab/nostruct-align/1wab.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20527/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.806641
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a3aA
id: 1a3aA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a3aA/nostruct-align/1a3aA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a3aA/nostruct-align/1a3aA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a3aA/nostruct-align/1a3aA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23350/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.995605
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mugA
id: 1mugA   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mugA/nostruct-align/1mugA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mugA/nostruct-align/1mugA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mugA/nostruct-align/1mugA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18987/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.032593
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aohA
id: 1aohA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aohA/nostruct-align/1aohA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aohA/nostruct-align/1aohA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aohA/nostruct-align/1aohA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10698/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.146606
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1psrA
id: 1psrA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1psrA/nostruct-align/1psrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1psrA/nostruct-align/1psrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1psrA/nostruct-align/1psrA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4888/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.933594
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ltm
id: 1ltm   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1ltm/nostruct-align/1ltm.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1ltm/nostruct-align/1ltm.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1ltm/nostruct-align/1ltm.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5876/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.035645
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bg6
id: 1bg6   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bg6/nostruct-align/1bg6.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bg6/nostruct-align/1bg6.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bg6/nostruct-align/1bg6.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17607/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.074585
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qq4A
id: 1qq4A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qq4A/nostruct-align/1qq4A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qq4A/nostruct-align/1qq4A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qq4A/nostruct-align/1qq4A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23288/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.512573
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pda
id: 1pda   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pda/nostruct-align/1pda.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pda/nostruct-align/1pda.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pda/nostruct-align/1pda.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6906/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.131592
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rhs
id: 1rhs   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rhs/nostruct-align/1rhs.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rhs/nostruct-align/1rhs.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rhs/nostruct-align/1rhs.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6628/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.870605
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 5ptp
id: 5ptp   alignment found: /projects/compbio/experiments/models.97/pdb/5p/5ptp/nostruct-align/5ptp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/5p/5ptp/nostruct-align/5ptp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/5p/5ptp/nostruct-align/5ptp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11800/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.609619
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nzyA
id: 1nzyA   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nzyA/nostruct-align/1nzyA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nzyA/nostruct-align/1nzyA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nzyA/nostruct-align/1nzyA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24335/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.680664
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2qwc
id: 2qwc   alignment found: /projects/compbio/experiments/models.97/pdb/2q/2qwc/nostruct-align/2qwc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2q/2qwc/nostruct-align/2qwc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2q/2qwc/nostruct-align/2qwc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11845/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.123657
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b6g
id: 1b6g   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b6g/nostruct-align/1b6g.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b6g/nostruct-align/1b6g.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b6g/nostruct-align/1b6g.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27046/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.169556
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b4kA
id: 1b4kA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4kA/nostruct-align/1b4kA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4kA/nostruct-align/1b4kA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b4kA/nostruct-align/1b4kA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5257/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.525635
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rgeA
id: 1rgeA   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rgeA/nostruct-align/1rgeA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rgeA/nostruct-align/1rgeA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rgeA/nostruct-align/1rgeA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10871/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.738647
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lid
id: 1lid   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lid/nostruct-align/1lid.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lid/nostruct-align/1lid.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lid/nostruct-align/1lid.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24440/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.453613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bgf
id: 1bgf   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bgf/nostruct-align/1bgf.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bgf/nostruct-align/1bgf.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bgf/nostruct-align/1bgf.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15038/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.814575
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aie
id: 1aie   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aie/nostruct-align/1aie.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aie/nostruct-align/1aie.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aie/nostruct-align/1aie.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17561/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.829712
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qhfA
id: 1qhfA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qhfA/nostruct-align/1qhfA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qhfA/nostruct-align/1qhfA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qhfA/nostruct-align/1qhfA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9555/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.839600
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mtyG
id: 1mtyG   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mtyG/nostruct-align/1mtyG.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mtyG/nostruct-align/1mtyG.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mtyG/nostruct-align/1mtyG.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1776/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.204590
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fvkA
id: 1fvkA   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fvkA/nostruct-align/1fvkA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fvkA/nostruct-align/1fvkA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fvkA/nostruct-align/1fvkA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14006/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.836670
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b2pA
id: 1b2pA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b2pA/nostruct-align/1b2pA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b2pA/nostruct-align/1b2pA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b2pA/nostruct-align/1b2pA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7105/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.256592
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4xis
id: 4xis   alignment found: /projects/compbio/experiments/models.97/pdb/4x/4xis/nostruct-align/4xis.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/4x/4xis/nostruct-align/4xis.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/4x/4xis/nostruct-align/4xis.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23509/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.070679
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mtyD
id: 1mtyD   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mtyD/nostruct-align/1mtyD.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mtyD/nostruct-align/1mtyD.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mtyD/nostruct-align/1mtyD.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30229/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.094604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2pviA
id: 2pviA   alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pviA/nostruct-align/2pviA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pviA/nostruct-align/2pviA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2p/2pviA/nostruct-align/2pviA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13174/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.116577
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1smd
id: 1smd   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1smd/nostruct-align/1smd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1smd/nostruct-align/1smd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1smd/nostruct-align/1smd.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5000/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.809570
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2sak
id: 2sak   alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sak/nostruct-align/2sak.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sak/nostruct-align/2sak.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2s/2sak/nostruct-align/2sak.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30877/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.315552
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1byqA
id: 1byqA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1byqA/nostruct-align/1byqA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1byqA/nostruct-align/1byqA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1byqA/nostruct-align/1byqA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31735/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.916626
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1babB
id: 1babB   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1babB/nostruct-align/1babB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1babB/nostruct-align/1babB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1babB/nostruct-align/1babB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22166/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.740601
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1g3p
id: 1g3p   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1g3p/nostruct-align/1g3p.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1g3p/nostruct-align/1g3p.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1g3p/nostruct-align/1g3p.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5218/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -17.449585
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1xgsA
id: 1xgsA   alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xgsA/nostruct-align/1xgsA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xgsA/nostruct-align/1xgsA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1x/1xgsA/nostruct-align/1xgsA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22045/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.817627
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a3c
id: 1a3c   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a3c/nostruct-align/1a3c.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a3c/nostruct-align/1a3c.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a3c/nostruct-align/1a3c.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9470/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.544556
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cyo
id: 1cyo   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cyo/nostruct-align/1cyo.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cyo/nostruct-align/1cyo.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cyo/nostruct-align/1cyo.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6727/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.031616
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3pyp
id: 3pyp   alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pyp/nostruct-align/3pyp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pyp/nostruct-align/3pyp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3p/3pyp/nostruct-align/3pyp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24413/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.467529
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1jer
id: 1jer   alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jer/nostruct-align/1jer.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jer/nostruct-align/1jer.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1j/1jer/nostruct-align/1jer.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9387/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.497681
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vjs
id: 1vjs   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vjs/nostruct-align/1vjs.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vjs/nostruct-align/1vjs.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vjs/nostruct-align/1vjs.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8922/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -18.783691
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cex
id: 1cex   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cex/nostruct-align/1cex.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cex/nostruct-align/1cex.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cex/nostruct-align/1cex.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7014/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.564575
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bzpA
id: 1bzpA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bzpA/nostruct-align/1bzpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bzpA/nostruct-align/1bzpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bzpA/nostruct-align/1bzpA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-757/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.517700
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ctj
id: 1ctj   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ctj/nostruct-align/1ctj.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ctj/nostruct-align/1ctj.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1ctj/nostruct-align/1ctj.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8052/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.249634
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mroC
id: 1mroC   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mroC/nostruct-align/1mroC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mroC/nostruct-align/1mroC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mroC/nostruct-align/1mroC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22489/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.216553
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mroA
id: 1mroA   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mroA/nostruct-align/1mroA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mroA/nostruct-align/1mroA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mroA/nostruct-align/1mroA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3861/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.704590
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1udc
id: 1udc   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1udc/nostruct-align/1udc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1udc/nostruct-align/1udc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1udc/nostruct-align/1udc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20119/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.162598
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gpeA
id: 1gpeA   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gpeA/nostruct-align/1gpeA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gpeA/nostruct-align/1gpeA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gpeA/nostruct-align/1gpeA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31835/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -17.388672
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gof
id: 1gof   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gof/nostruct-align/1gof.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gof/nostruct-align/1gof.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gof/nostruct-align/1gof.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24329/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.601563
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mroB
id: 1mroB   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mroB/nostruct-align/1mroB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mroB/nostruct-align/1mroB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mroB/nostruct-align/1mroB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18161/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.604614
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a8i
id: 1a8i   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8i/nostruct-align/1a8i.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8i/nostruct-align/1a8i.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a8i/nostruct-align/1a8i.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11534/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.511597
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dciA
id: 1dciA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dciA/nostruct-align/1dciA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dciA/nostruct-align/1dciA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dciA/nostruct-align/1dciA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4516/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.240601
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ha1
id: 1ha1   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1ha1/nostruct-align/1ha1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1ha1/nostruct-align/1ha1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1ha1/nostruct-align/1ha1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29125/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.611572
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bk0
id: 1bk0   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bk0/nostruct-align/1bk0.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bk0/nostruct-align/1bk0.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bk0/nostruct-align/1bk0.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18847/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.005615
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 6rlxA
id: 6rlxA   alignment found: /projects/compbio/experiments/models.97/pdb/6r/6rlxA/nostruct-align/6rlxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/6r/6rlxA/nostruct-align/6rlxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/6r/6rlxA/nostruct-align/6rlxA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6528/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.273560
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ajsA
id: 1ajsA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ajsA/nostruct-align/1ajsA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ajsA/nostruct-align/1ajsA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ajsA/nostruct-align/1ajsA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28008/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.209595
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 6rlxB
id: 6rlxB   alignment found: /projects/compbio/experiments/models.97/pdb/6r/6rlxB/nostruct-align/6rlxB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/6r/6rlxB/nostruct-align/6rlxB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/6r/6rlxB/nostruct-align/6rlxB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1664/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.760620
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2fdn
id: 2fdn   alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fdn/nostruct-align/2fdn.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fdn/nostruct-align/2fdn.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2f/2fdn/nostruct-align/2fdn.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26565/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.246704
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mof
id: 1mof   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mof/nostruct-align/1mof.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mof/nostruct-align/1mof.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mof/nostruct-align/1mof.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19091/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.587524
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4pgaA
id: 4pgaA   alignment found: /projects/compbio/experiments/models.97/pdb/4p/4pgaA/nostruct-align/4pgaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/4p/4pgaA/nostruct-align/4pgaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/4p/4pgaA/nostruct-align/4pgaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21357/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.690552
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1toaA
id: 1toaA   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1toaA/nostruct-align/1toaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1toaA/nostruct-align/1toaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1toaA/nostruct-align/1toaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5433/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.786621
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1xjo
id: 1xjo   alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xjo/nostruct-align/1xjo.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xjo/nostruct-align/1xjo.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1x/1xjo/nostruct-align/1xjo.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15686/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.847534
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mrp
id: 1mrp   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mrp/nostruct-align/1mrp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mrp/nostruct-align/1mrp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mrp/nostruct-align/1mrp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30016/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.752563
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fdr
id: 1fdr   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fdr/nostruct-align/1fdr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fdr/nostruct-align/1fdr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fdr/nostruct-align/1fdr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-751/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.625610
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1agjA
id: 1agjA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agjA/nostruct-align/1agjA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agjA/nostruct-align/1agjA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1agjA/nostruct-align/1agjA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21522/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.127563
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ryc
id: 1ryc   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1ryc/nostruct-align/1ryc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1ryc/nostruct-align/1ryc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1ryc/nostruct-align/1ryc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9606/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.978516
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bfd
id: 1bfd   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bfd/nostruct-align/1bfd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bfd/nostruct-align/1bfd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bfd/nostruct-align/1bfd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5643/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.004517
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bdmA
id: 1bdmA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bdmA/nostruct-align/1bdmA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bdmA/nostruct-align/1bdmA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bdmA/nostruct-align/1bdmA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19040/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.359619
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 5rubA
id: 5rubA   alignment found: /projects/compbio/experiments/models.97/pdb/5r/5rubA/nostruct-align/5rubA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/5r/5rubA/nostruct-align/5rubA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/5r/5rubA/nostruct-align/5rubA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12707/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.056519
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fglB
id: 1fglB   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fglB/nostruct-align/1fglB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fglB/nostruct-align/1fglB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fglB/nostruct-align/1fglB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21170/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -4.861572
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1svfB
id: 1svfB   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1svfB/nostruct-align/1svfB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1svfB/nostruct-align/1svfB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1svfB/nostruct-align/1svfB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7575/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.185669
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2izhB
id: 2izhB   alignment found: /projects/compbio/experiments/models.97/pdb/2i/2izhB/nostruct-align/2izhB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2i/2izhB/nostruct-align/2izhB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2i/2izhB/nostruct-align/2izhB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9213/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.134644
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pcfA
id: 1pcfA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pcfA/nostruct-align/1pcfA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pcfA/nostruct-align/1pcfA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pcfA/nostruct-align/1pcfA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13482/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.402710
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1svfA
id: 1svfA   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1svfA/nostruct-align/1svfA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1svfA/nostruct-align/1svfA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1svfA/nostruct-align/1svfA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27005/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.988647
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bkpA
id: 1bkpA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkpA/nostruct-align/1bkpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkpA/nostruct-align/1bkpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bkpA/nostruct-align/1bkpA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9492/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.241577
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cb0A
id: 1cb0A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cb0A/nostruct-align/1cb0A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cb0A/nostruct-align/1cb0A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cb0A/nostruct-align/1cb0A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26603/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.923584
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cv8
id: 1cv8   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cv8/nostruct-align/1cv8.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cv8/nostruct-align/1cv8.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cv8/nostruct-align/1cv8.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-247/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.505615
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rie
id: 1rie   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rie/nostruct-align/1rie.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rie/nostruct-align/1rie.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rie/nostruct-align/1rie.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18041/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.112671
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qreA
id: 1qreA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qreA/nostruct-align/1qreA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qreA/nostruct-align/1qreA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qreA/nostruct-align/1qreA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8275/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.528564
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bdo
id: 1bdo   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bdo/nostruct-align/1bdo.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bdo/nostruct-align/1bdo.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bdo/nostruct-align/1bdo.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-594/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.820557
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3seb
id: 3seb   alignment found: /projects/compbio/experiments/models.97/pdb/3s/3seb/nostruct-align/3seb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3s/3seb/nostruct-align/3seb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3s/3seb/nostruct-align/3seb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8418/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.070557
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ftrA
id: 1ftrA   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1ftrA/nostruct-align/1ftrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1ftrA/nostruct-align/1ftrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1ftrA/nostruct-align/1ftrA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13305/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.915649
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1al3
id: 1al3   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1al3/nostruct-align/1al3.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1al3/nostruct-align/1al3.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1al3/nostruct-align/1al3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8289/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.958618
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4eugA
id: 4eugA   alignment found: /projects/compbio/experiments/models.97/pdb/4e/4eugA/nostruct-align/4eugA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/4e/4eugA/nostruct-align/4eugA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/4e/4eugA/nostruct-align/4eugA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13957/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.866699
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gdoA
id: 1gdoA   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gdoA/nostruct-align/1gdoA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gdoA/nostruct-align/1gdoA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gdoA/nostruct-align/1gdoA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19476/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.419678
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 16pk
id: 16pk   alignment found: /projects/compbio/experiments/models.97/pdb/16/16pk/nostruct-align/16pk.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/16/16pk/nostruct-align/16pk.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/16/16pk/nostruct-align/16pk.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22820/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.875610
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dlfL
id: 1dlfL   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dlfL/nostruct-align/1dlfL.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dlfL/nostruct-align/1dlfL.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dlfL/nostruct-align/1dlfL.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21064/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.418579
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lbu
id: 1lbu   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lbu/nostruct-align/1lbu.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lbu/nostruct-align/1lbu.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lbu/nostruct-align/1lbu.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16063/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.920654
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ads
id: 1ads   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ads/nostruct-align/1ads.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ads/nostruct-align/1ads.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ads/nostruct-align/1ads.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-2148/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.770630
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dosA
id: 1dosA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dosA/nostruct-align/1dosA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dosA/nostruct-align/1dosA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dosA/nostruct-align/1dosA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9823/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.262573
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ush
id: 1ush   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1ush/nostruct-align/1ush.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1ush/nostruct-align/1ush.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1ush/nostruct-align/1ush.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20602/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.880615
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qb7A
id: 1qb7A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qb7A/nostruct-align/1qb7A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qb7A/nostruct-align/1qb7A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qb7A/nostruct-align/1qb7A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11526/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.768677
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1avmA
id: 1avmA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avmA/nostruct-align/1avmA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avmA/nostruct-align/1avmA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1avmA/nostruct-align/1avmA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25598/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.120605
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1yveI
id: 1yveI   alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yveI/nostruct-align/1yveI.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yveI/nostruct-align/1yveI.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1y/1yveI/nostruct-align/1yveI.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6366/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.694580
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2mcm
id: 2mcm   alignment found: /projects/compbio/experiments/models.97/pdb/2m/2mcm/nostruct-align/2mcm.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2mcm/nostruct-align/2mcm.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2m/2mcm/nostruct-align/2mcm.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15185/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.837524
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a1yI
id: 1a1yI   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a1yI/nostruct-align/1a1yI.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a1yI/nostruct-align/1a1yI.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a1yI/nostruct-align/1a1yI.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3877/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.088623
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bw9A
id: 1bw9A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bw9A/nostruct-align/1bw9A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bw9A/nostruct-align/1bw9A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bw9A/nostruct-align/1bw9A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24875/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.289551
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bi5A
id: 1bi5A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bi5A/nostruct-align/1bi5A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bi5A/nostruct-align/1bi5A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bi5A/nostruct-align/1bi5A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27182/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.797607
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a9xB
id: 1a9xB   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a9xB/nostruct-align/1a9xB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a9xB/nostruct-align/1a9xB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a9xB/nostruct-align/1a9xB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13555/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.415649
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d2nA
id: 1d2nA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d2nA/nostruct-align/1d2nA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d2nA/nostruct-align/1d2nA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d2nA/nostruct-align/1d2nA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16894/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.949585
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a28A
id: 1a28A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a28A/nostruct-align/1a28A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a28A/nostruct-align/1a28A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a28A/nostruct-align/1a28A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12290/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.589600
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gd1O
id: 1gd1O   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gd1O/nostruct-align/1gd1O.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gd1O/nostruct-align/1gd1O.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gd1O/nostruct-align/1gd1O.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31826/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.798584
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1edg
id: 1edg   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1edg/nostruct-align/1edg.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1edg/nostruct-align/1edg.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1edg/nostruct-align/1edg.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23454/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.832520
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dlfH
id: 1dlfH   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dlfH/nostruct-align/1dlfH.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dlfH/nostruct-align/1dlfH.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dlfH/nostruct-align/1dlfH.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3528/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.105591
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a1iA
id: 1a1iA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a1iA/nostruct-align/1a1iA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a1iA/nostruct-align/1a1iA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a1iA/nostruct-align/1a1iA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14164/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.112549
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qfmA
id: 1qfmA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qfmA/nostruct-align/1qfmA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qfmA/nostruct-align/1qfmA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qfmA/nostruct-align/1qfmA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16634/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -16.049683
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cf9A
id: 1cf9A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cf9A/nostruct-align/1cf9A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cf9A/nostruct-align/1cf9A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cf9A/nostruct-align/1cf9A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28520/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.455566
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a9xA
id: 1a9xA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a9xA/nostruct-align/1a9xA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a9xA/nostruct-align/1a9xA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a9xA/nostruct-align/1a9xA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2969/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -16.309570
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3lck
id: 3lck   alignment found: /projects/compbio/experiments/models.97/pdb/3l/3lck/nostruct-align/3lck.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3l/3lck/nostruct-align/3lck.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3l/3lck/nostruct-align/3lck.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17045/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.076660
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hcl
id: 1hcl   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hcl/nostruct-align/1hcl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hcl/nostruct-align/1hcl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hcl/nostruct-align/1hcl.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2658/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.247559
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1whi
id: 1whi   alignment found: /projects/compbio/experiments/models.97/pdb/1w/1whi/nostruct-align/1whi.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1whi/nostruct-align/1whi.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1w/1whi/nostruct-align/1whi.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2038/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.513672
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2arcA
id: 2arcA   alignment found: /projects/compbio/experiments/models.97/pdb/2a/2arcA/nostruct-align/2arcA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2arcA/nostruct-align/2arcA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2a/2arcA/nostruct-align/2arcA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7879/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.575562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1iibA
id: 1iibA   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iibA/nostruct-align/1iibA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iibA/nostruct-align/1iibA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1iibA/nostruct-align/1iibA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24109/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.654663
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 451c
id: 451c   alignment found: /projects/compbio/experiments/models.97/pdb/45/451c/nostruct-align/451c.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/45/451c/nostruct-align/451c.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/45/451c/nostruct-align/451c.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22302/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.617554
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b0y
id: 1b0y   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b0y/nostruct-align/1b0y.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b0y/nostruct-align/1b0y.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b0y/nostruct-align/1b0y.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10809/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.522583
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qtsA
id: 1qtsA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qtsA/nostruct-align/1qtsA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qtsA/nostruct-align/1qtsA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qtsA/nostruct-align/1qtsA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14228/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.900513
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hka
id: 1hka   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hka/nostruct-align/1hka.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hka/nostruct-align/1hka.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hka/nostruct-align/1hka.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8146/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.404663
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fltV
id: 1fltV   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fltV/nostruct-align/1fltV.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fltV/nostruct-align/1fltV.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fltV/nostruct-align/1fltV.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26334/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.155640
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1svy
id: 1svy   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1svy/nostruct-align/1svy.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1svy/nostruct-align/1svy.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1svy/nostruct-align/1svy.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28384/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.002563
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1phnA
id: 1phnA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1phnA/nostruct-align/1phnA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1phnA/nostruct-align/1phnA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1phnA/nostruct-align/1phnA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32569/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.737671
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fus
id: 1fus   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fus/nostruct-align/1fus.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fus/nostruct-align/1fus.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fus/nostruct-align/1fus.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4345/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.147583
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fltX
id: 1fltX   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fltX/nostruct-align/1fltX.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fltX/nostruct-align/1fltX.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fltX/nostruct-align/1fltX.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-533/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.704712
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1iab
id: 1iab   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iab/nostruct-align/1iab.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iab/nostruct-align/1iab.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1iab/nostruct-align/1iab.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32374/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.659668
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bkrA
id: 1bkrA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkrA/nostruct-align/1bkrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkrA/nostruct-align/1bkrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bkrA/nostruct-align/1bkrA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21792/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.762573
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qddA
id: 1qddA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qddA/nostruct-align/1qddA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qddA/nostruct-align/1qddA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qddA/nostruct-align/1qddA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10705/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.433594
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 153l
id: 153l   alignment found: /projects/compbio/experiments/models.97/pdb/15/153l/nostruct-align/153l.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/15/153l/nostruct-align/153l.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/15/153l/nostruct-align/153l.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28748/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.876587
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 5hpgA
id: 5hpgA   alignment found: /projects/compbio/experiments/models.97/pdb/5h/5hpgA/nostruct-align/5hpgA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/5h/5hpgA/nostruct-align/5hpgA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/5h/5hpgA/nostruct-align/5hpgA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4936/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.600586
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mpgA
id: 1mpgA   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mpgA/nostruct-align/1mpgA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mpgA/nostruct-align/1mpgA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mpgA/nostruct-align/1mpgA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10445/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.408569
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dpsA
id: 1dpsA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dpsA/nostruct-align/1dpsA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dpsA/nostruct-align/1dpsA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dpsA/nostruct-align/1dpsA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25291/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.805542
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cem
id: 1cem   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cem/nostruct-align/1cem.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cem/nostruct-align/1cem.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cem/nostruct-align/1cem.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2306/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.710571
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lmb3
id: 1lmb3   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lmb3/nostruct-align/1lmb3.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lmb3/nostruct-align/1lmb3.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lmb3/nostruct-align/1lmb3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12462/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.388672
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qazA
id: 1qazA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qazA/nostruct-align/1qazA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qazA/nostruct-align/1qazA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qazA/nostruct-align/1qazA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7655/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.164551
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mun
id: 1mun   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mun/nostruct-align/1mun.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mun/nostruct-align/1mun.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mun/nostruct-align/1mun.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2134/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.252563
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ppn
id: 1ppn   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1ppn/nostruct-align/1ppn.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1ppn/nostruct-align/1ppn.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1ppn/nostruct-align/1ppn.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22954/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.744629
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cy5A
id: 1cy5A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cy5A/nostruct-align/1cy5A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cy5A/nostruct-align/1cy5A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cy5A/nostruct-align/1cy5A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3972/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.568604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1oneA
id: 1oneA   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1oneA/nostruct-align/1oneA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1oneA/nostruct-align/1oneA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1oneA/nostruct-align/1oneA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-893/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.783691
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bj7
id: 1bj7   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bj7/nostruct-align/1bj7.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bj7/nostruct-align/1bj7.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bj7/nostruct-align/1bj7.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7328/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.596558
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1yacA
id: 1yacA   alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yacA/nostruct-align/1yacA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yacA/nostruct-align/1yacA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1y/1yacA/nostruct-align/1yacA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12793/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.090576
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gai
id: 1gai   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gai/nostruct-align/1gai.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gai/nostruct-align/1gai.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gai/nostruct-align/1gai.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18460/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.111572
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ra9
id: 1ra9   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1ra9/nostruct-align/1ra9.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1ra9/nostruct-align/1ra9.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1ra9/nostruct-align/1ra9.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28833/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.044678
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cjcA
id: 1cjcA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cjcA/nostruct-align/1cjcA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cjcA/nostruct-align/1cjcA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cjcA/nostruct-align/1cjcA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16717/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.444580
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mfmA
id: 1mfmA   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mfmA/nostruct-align/1mfmA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mfmA/nostruct-align/1mfmA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mfmA/nostruct-align/1mfmA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11652/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.437622
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dptA
id: 1dptA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dptA/nostruct-align/1dptA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dptA/nostruct-align/1dptA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dptA/nostruct-align/1dptA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12175/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.408569
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cqwA
id: 1cqwA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cqwA/nostruct-align/1cqwA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cqwA/nostruct-align/1cqwA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cqwA/nostruct-align/1cqwA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8455/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.787598
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2igd
id: 2igd   alignment found: /projects/compbio/experiments/models.97/pdb/2i/2igd/nostruct-align/2igd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2i/2igd/nostruct-align/2igd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2i/2igd/nostruct-align/2igd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5286/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.185669
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3sil
id: 3sil   alignment found: /projects/compbio/experiments/models.97/pdb/3s/3sil/nostruct-align/3sil.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3s/3sil/nostruct-align/3sil.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3s/3sil/nostruct-align/3sil.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-403/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -16.406616
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vfrA
id: 1vfrA   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vfrA/nostruct-align/1vfrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vfrA/nostruct-align/1vfrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vfrA/nostruct-align/1vfrA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9516/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.164551
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sat
id: 1sat   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sat/nostruct-align/1sat.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sat/nostruct-align/1sat.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sat/nostruct-align/1sat.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13651/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -24.960571
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cnzA
id: 1cnzA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cnzA/nostruct-align/1cnzA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cnzA/nostruct-align/1cnzA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cnzA/nostruct-align/1cnzA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5872/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.598633
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qtwA
id: 1qtwA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qtwA/nostruct-align/1qtwA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qtwA/nostruct-align/1qtwA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qtwA/nostruct-align/1qtwA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18102/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.229614
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nox
id: 1nox   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nox/nostruct-align/1nox.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nox/nostruct-align/1nox.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nox/nostruct-align/1nox.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11201/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.989624
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ezm
id: 1ezm   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ezm/nostruct-align/1ezm.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ezm/nostruct-align/1ezm.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1ezm/nostruct-align/1ezm.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7502/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -19.265503
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tx4A
id: 1tx4A   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tx4A/nostruct-align/1tx4A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tx4A/nostruct-align/1tx4A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tx4A/nostruct-align/1tx4A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10163/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.210571
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pymA
id: 1pymA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pymA/nostruct-align/1pymA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pymA/nostruct-align/1pymA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pymA/nostruct-align/1pymA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17480/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.845581
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1oaa
id: 1oaa   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1oaa/nostruct-align/1oaa.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1oaa/nostruct-align/1oaa.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1oaa/nostruct-align/1oaa.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21603/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.103516
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1opd
id: 1opd   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1opd/nostruct-align/1opd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1opd/nostruct-align/1opd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1opd/nostruct-align/1opd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12088/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.485596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bueA
id: 1bueA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bueA/nostruct-align/1bueA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bueA/nostruct-align/1bueA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bueA/nostruct-align/1bueA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20962/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.730591
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ayh
id: 2ayh   alignment found: /projects/compbio/experiments/models.97/pdb/2a/2ayh/nostruct-align/2ayh.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2ayh/nostruct-align/2ayh.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2a/2ayh/nostruct-align/2ayh.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21404/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.684570
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nulA
id: 1nulA   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nulA/nostruct-align/1nulA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nulA/nostruct-align/1nulA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nulA/nostruct-align/1nulA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14867/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.114624
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ahjB
id: 2ahjB   alignment found: /projects/compbio/experiments/models.97/pdb/2a/2ahjB/nostruct-align/2ahjB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2ahjB/nostruct-align/2ahjB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2a/2ahjB/nostruct-align/2ahjB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27999/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.296631
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ahjA
id: 2ahjA   alignment found: /projects/compbio/experiments/models.97/pdb/2a/2ahjA/nostruct-align/2ahjA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2ahjA/nostruct-align/2ahjA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2a/2ahjA/nostruct-align/2ahjA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32633/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.698608
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1guqA
id: 1guqA   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1guqA/nostruct-align/1guqA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1guqA/nostruct-align/1guqA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1guqA/nostruct-align/1guqA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10530/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.795654
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 7a3hA
id: 7a3hA   alignment found: /projects/compbio/experiments/models.97/pdb/7a/7a3hA/nostruct-align/7a3hA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/7a/7a3hA/nostruct-align/7a3hA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/7a/7a3hA/nostruct-align/7a3hA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16156/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.443604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tvxA
id: 1tvxA   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tvxA/nostruct-align/1tvxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tvxA/nostruct-align/1tvxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tvxA/nostruct-align/1tvxA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10184/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.985596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nbcA
id: 1nbcA   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nbcA/nostruct-align/1nbcA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nbcA/nostruct-align/1nbcA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nbcA/nostruct-align/1nbcA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15964/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.008667
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1byi
id: 1byi   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1byi/nostruct-align/1byi.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1byi/nostruct-align/1byi.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1byi/nostruct-align/1byi.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17034/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.446655
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pgs
id: 1pgs   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pgs/nostruct-align/1pgs.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pgs/nostruct-align/1pgs.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pgs/nostruct-align/1pgs.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13743/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.296631
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aho
id: 1aho   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aho/nostruct-align/1aho.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aho/nostruct-align/1aho.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aho/nostruct-align/1aho.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32368/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.016602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bkf
id: 1bkf   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkf/nostruct-align/1bkf.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkf/nostruct-align/1bkf.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bkf/nostruct-align/1bkf.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19005/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.250610
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aop
id: 1aop   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aop/nostruct-align/1aop.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aop/nostruct-align/1aop.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aop/nostruct-align/1aop.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26307/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.439575
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 5pti
id: 5pti   alignment found: /projects/compbio/experiments/models.97/pdb/5p/5pti/nostruct-align/5pti.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/5p/5pti/nostruct-align/5pti.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/5p/5pti/nostruct-align/5pti.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19529/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.892700
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vns
id: 1vns   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vns/nostruct-align/1vns.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vns/nostruct-align/1vns.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vns/nostruct-align/1vns.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5425/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.699585
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1axn
id: 1axn   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1axn/nostruct-align/1axn.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1axn/nostruct-align/1axn.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1axn/nostruct-align/1axn.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19708/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.666626
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1atg
id: 1atg   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1atg/nostruct-align/1atg.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1atg/nostruct-align/1atg.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1atg/nostruct-align/1atg.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2665/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.243652
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lucA
id: 1lucA   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lucA/nostruct-align/1lucA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lucA/nostruct-align/1lucA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lucA/nostruct-align/1lucA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1389/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.430664
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mla
id: 1mla   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mla/nostruct-align/1mla.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mla/nostruct-align/1mla.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mla/nostruct-align/1mla.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29415/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.338623
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ayl
id: 1ayl   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ayl/nostruct-align/1ayl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ayl/nostruct-align/1ayl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ayl/nostruct-align/1ayl.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22350/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.602539
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c3d
id: 1c3d   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3d/nostruct-align/1c3d.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3d/nostruct-align/1c3d.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c3d/nostruct-align/1c3d.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6653/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.747559
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lucB
id: 1lucB   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lucB/nostruct-align/1lucB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lucB/nostruct-align/1lucB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lucB/nostruct-align/1lucB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20825/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.262573
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qbzA
id: 1qbzA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qbzA/nostruct-align/1qbzA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qbzA/nostruct-align/1qbzA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qbzA/nostruct-align/1qbzA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29851/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.236572
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nif
id: 1nif   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nif/nostruct-align/1nif.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nif/nostruct-align/1nif.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nif/nostruct-align/1nif.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3940/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.017578
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qsaA
id: 1qsaA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qsaA/nostruct-align/1qsaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qsaA/nostruct-align/1qsaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qsaA/nostruct-align/1qsaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18500/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.860596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dqsA
id: 1dqsA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dqsA/nostruct-align/1dqsA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dqsA/nostruct-align/1dqsA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dqsA/nostruct-align/1dqsA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10767/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.018677
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qcxA
id: 1qcxA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qcxA/nostruct-align/1qcxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qcxA/nostruct-align/1qcxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qcxA/nostruct-align/1qcxA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20881/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -15.759644
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cxqA
id: 1cxqA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cxqA/nostruct-align/1cxqA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cxqA/nostruct-align/1cxqA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cxqA/nostruct-align/1cxqA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13348/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.026611
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pamA
id: 1pamA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pamA/nostruct-align/1pamA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pamA/nostruct-align/1pamA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pamA/nostruct-align/1pamA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7079/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -22.391602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1yge
id: 1yge   alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yge/nostruct-align/1yge.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yge/nostruct-align/1yge.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1y/1yge/nostruct-align/1yge.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12524/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.372559
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bupA
id: 1bupA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bupA/nostruct-align/1bupA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bupA/nostruct-align/1bupA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bupA/nostruct-align/1bupA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20569/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.049561
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bqcA
id: 1bqcA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqcA/nostruct-align/1bqcA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqcA/nostruct-align/1bqcA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bqcA/nostruct-align/1bqcA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14721/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.035645
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bs0A
id: 1bs0A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bs0A/nostruct-align/1bs0A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bs0A/nostruct-align/1bs0A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bs0A/nostruct-align/1bs0A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22348/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.571533
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qksA
id: 1qksA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qksA/nostruct-align/1qksA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qksA/nostruct-align/1qksA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qksA/nostruct-align/1qksA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12577/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.892578
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3il8
id: 3il8   alignment found: /projects/compbio/experiments/models.97/pdb/3i/3il8/nostruct-align/3il8.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3i/3il8/nostruct-align/3il8.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3i/3il8/nostruct-align/3il8.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25115/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.281616
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b0nA
id: 1b0nA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b0nA/nostruct-align/1b0nA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b0nA/nostruct-align/1b0nA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b0nA/nostruct-align/1b0nA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29938/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.459595
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1u9aA
id: 1u9aA   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1u9aA/nostruct-align/1u9aA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1u9aA/nostruct-align/1u9aA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1u9aA/nostruct-align/1u9aA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9065/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.162598
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1doi
id: 1doi   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1doi/nostruct-align/1doi.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1doi/nostruct-align/1doi.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1doi/nostruct-align/1doi.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2816/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.832642
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bsg
id: 1bsg   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bsg/nostruct-align/1bsg.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bsg/nostruct-align/1bsg.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bsg/nostruct-align/1bsg.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6292/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.364624
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lopA
id: 1lopA   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lopA/nostruct-align/1lopA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lopA/nostruct-align/1lopA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lopA/nostruct-align/1lopA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9072/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.499634
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aoqA
id: 1aoqA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoqA/nostruct-align/1aoqA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoqA/nostruct-align/1aoqA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aoqA/nostruct-align/1aoqA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3544/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.377563
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b0nB
id: 1b0nB   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b0nB/nostruct-align/1b0nB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b0nB/nostruct-align/1b0nB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b0nB/nostruct-align/1b0nB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1865/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.962524
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vppX
id: 1vppX   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vppX/nostruct-align/1vppX.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vppX/nostruct-align/1vppX.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vppX/nostruct-align/1vppX.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19973/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.479614
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rtu
id: 1rtu   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rtu/nostruct-align/1rtu.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rtu/nostruct-align/1rtu.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rtu/nostruct-align/1rtu.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9059/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.090576
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cdcA
id: 1cdcA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdcA/nostruct-align/1cdcA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdcA/nostruct-align/1cdcA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cdcA/nostruct-align/1cdcA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27370/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.272583
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fjlA
id: 1fjlA   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fjlA/nostruct-align/1fjlA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fjlA/nostruct-align/1fjlA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fjlA/nostruct-align/1fjlA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9566/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.766602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1htrB
id: 1htrB   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1htrB/nostruct-align/1htrB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1htrB/nostruct-align/1htrB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1htrB/nostruct-align/1htrB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25271/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.653564
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1augA
id: 1augA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1augA/nostruct-align/1augA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1augA/nostruct-align/1augA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1augA/nostruct-align/1augA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11823/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.954590
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bzyA
id: 1bzyA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bzyA/nostruct-align/1bzyA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bzyA/nostruct-align/1bzyA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bzyA/nostruct-align/1bzyA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-361/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.110596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a8b
id: 1a8b   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8b/nostruct-align/1a8b.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8b/nostruct-align/1a8b.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a8b/nostruct-align/1a8b.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9015/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.644531
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aapA
id: 1aapA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aapA/nostruct-align/1aapA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aapA/nostruct-align/1aapA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aapA/nostruct-align/1aapA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31177/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.840576
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1amx
id: 1amx   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amx/nostruct-align/1amx.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amx/nostruct-align/1amx.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1amx/nostruct-align/1amx.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5456/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.044678
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vapA
id: 1vapA   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vapA/nostruct-align/1vapA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vapA/nostruct-align/1vapA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vapA/nostruct-align/1vapA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2984/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.900635
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1shkA
id: 1shkA   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1shkA/nostruct-align/1shkA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1shkA/nostruct-align/1shkA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1shkA/nostruct-align/1shkA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5559/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.670532
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sfp
id: 1sfp   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sfp/nostruct-align/1sfp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sfp/nostruct-align/1sfp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sfp/nostruct-align/1sfp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8655/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.018555
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rfs
id: 1rfs   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rfs/nostruct-align/1rfs.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rfs/nostruct-align/1rfs.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rfs/nostruct-align/1rfs.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29776/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.084595
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aq0A
id: 1aq0A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aq0A/nostruct-align/1aq0A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aq0A/nostruct-align/1aq0A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aq0A/nostruct-align/1aq0A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20400/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.047607
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dokA
id: 1dokA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dokA/nostruct-align/1dokA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dokA/nostruct-align/1dokA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dokA/nostruct-align/1dokA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27750/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.161621
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2hvm
id: 2hvm   alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hvm/nostruct-align/2hvm.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hvm/nostruct-align/2hvm.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2h/2hvm/nostruct-align/2hvm.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16776/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.080566
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a7cA
id: 1a7cA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a7cA/nostruct-align/1a7cA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a7cA/nostruct-align/1a7cA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a7cA/nostruct-align/1a7cA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24407/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.368530
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2knt
id: 2knt   alignment found: /projects/compbio/experiments/models.97/pdb/2k/2knt/nostruct-align/2knt.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2k/2knt/nostruct-align/2knt.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2k/2knt/nostruct-align/2knt.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12832/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.850586
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1oacA
id: 1oacA   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1oacA/nostruct-align/1oacA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1oacA/nostruct-align/1oacA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1oacA/nostruct-align/1oacA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22725/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.331665
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hleA
id: 1hleA   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hleA/nostruct-align/1hleA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hleA/nostruct-align/1hleA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hleA/nostruct-align/1hleA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27919/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.523560
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aqm
id: 1aqm   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aqm/nostruct-align/1aqm.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aqm/nostruct-align/1aqm.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aqm/nostruct-align/1aqm.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29488/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -16.709595
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1kapP
id: 1kapP   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kapP/nostruct-align/1kapP.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kapP/nostruct-align/1kapP.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1kapP/nostruct-align/1kapP.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30261/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -29.281616
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 8acn
id: 8acn   alignment found: /projects/compbio/experiments/models.97/pdb/8a/8acn/nostruct-align/8acn.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/8a/8acn/nostruct-align/8acn.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/8a/8acn/nostruct-align/8acn.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31757/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.109619
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mn1
id: 1mn1   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mn1/nostruct-align/1mn1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mn1/nostruct-align/1mn1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mn1/nostruct-align/1mn1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-162/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.778564
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cm4B
id: 1cm4B   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cm4B/nostruct-align/1cm4B.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cm4B/nostruct-align/1cm4B.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cm4B/nostruct-align/1cm4B.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17701/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.114624
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bkzA
id: 1bkzA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkzA/nostruct-align/1bkzA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkzA/nostruct-align/1bkzA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bkzA/nostruct-align/1bkzA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16707/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.673584
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aboA
id: 1aboA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aboA/nostruct-align/1aboA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aboA/nostruct-align/1aboA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aboA/nostruct-align/1aboA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23663/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.084717
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3c2c
id: 3c2c   alignment found: /projects/compbio/experiments/models.97/pdb/3c/3c2c/nostruct-align/3c2c.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3c2c/nostruct-align/3c2c.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3c/3c2c/nostruct-align/3c2c.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28091/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.398560
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sur
id: 1sur   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sur/nostruct-align/1sur.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sur/nostruct-align/1sur.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sur/nostruct-align/1sur.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17121/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.730591
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1uox
id: 1uox   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uox/nostruct-align/1uox.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uox/nostruct-align/1uox.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1uox/nostruct-align/1uox.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31822/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.575684
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1yaiA
id: 1yaiA   alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yaiA/nostruct-align/1yaiA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yaiA/nostruct-align/1yaiA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1y/1yaiA/nostruct-align/1yaiA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5360/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.801514
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1zpdA
id: 1zpdA   alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zpdA/nostruct-align/1zpdA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zpdA/nostruct-align/1zpdA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1z/1zpdA/nostruct-align/1zpdA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6339/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.968628
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vpsA
id: 1vpsA   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vpsA/nostruct-align/1vpsA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vpsA/nostruct-align/1vpsA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vpsA/nostruct-align/1vpsA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20747/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.048706
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3daaA
id: 3daaA   alignment found: /projects/compbio/experiments/models.97/pdb/3d/3daaA/nostruct-align/3daaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3d/3daaA/nostruct-align/3daaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3d/3daaA/nostruct-align/3daaA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27942/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.338623
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nseA
id: 1nseA   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nseA/nostruct-align/1nseA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nseA/nostruct-align/1nseA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nseA/nostruct-align/1nseA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.087646
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1wwcA
id: 1wwcA   alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wwcA/nostruct-align/1wwcA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wwcA/nostruct-align/1wwcA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1w/1wwcA/nostruct-align/1wwcA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25574/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.610596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lou
id: 1lou   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lou/nostruct-align/1lou.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lou/nostruct-align/1lou.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lou/nostruct-align/1lou.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7233/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.850586
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b7dA
id: 1b7dA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b7dA/nostruct-align/1b7dA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b7dA/nostruct-align/1b7dA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b7dA/nostruct-align/1b7dA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30315/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.017578
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4blmA
id: 4blmA   alignment found: /projects/compbio/experiments/models.97/pdb/4b/4blmA/nostruct-align/4blmA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/4b/4blmA/nostruct-align/4blmA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/4b/4blmA/nostruct-align/4blmA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24857/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.942627
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 7ahlA
id: 7ahlA   alignment found: /projects/compbio/experiments/models.97/pdb/7a/7ahlA/nostruct-align/7ahlA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/7a/7ahlA/nostruct-align/7ahlA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/7a/7ahlA/nostruct-align/7ahlA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11378/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.717651
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bn5
id: 1bn5   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bn5/nostruct-align/1bn5.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bn5/nostruct-align/1bn5.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bn5/nostruct-align/1bn5.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7018/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.449585
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a4mA
id: 1a4mA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a4mA/nostruct-align/1a4mA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a4mA/nostruct-align/1a4mA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a4mA/nostruct-align/1a4mA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14574/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.424561
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2mltA
id: 2mltA   alignment found: /projects/compbio/experiments/models.97/pdb/2m/2mltA/nostruct-align/2mltA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2mltA/nostruct-align/2mltA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2m/2mltA/nostruct-align/2mltA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31823/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.571655
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pnkA
id: 1pnkA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pnkA/nostruct-align/1pnkA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pnkA/nostruct-align/1pnkA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pnkA/nostruct-align/1pnkA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8483/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.693604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b2nB
id: 1b2nB   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b2nB/nostruct-align/1b2nB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b2nB/nostruct-align/1b2nB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b2nB/nostruct-align/1b2nB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19046/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.276611
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1huuA
id: 1huuA   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1huuA/nostruct-align/1huuA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1huuA/nostruct-align/1huuA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1huuA/nostruct-align/1huuA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3588/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.976562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cpo
id: 1cpo   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cpo/nostruct-align/1cpo.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cpo/nostruct-align/1cpo.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cpo/nostruct-align/1cpo.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15331/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.341675
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vid
id: 1vid   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vid/nostruct-align/1vid.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vid/nostruct-align/1vid.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vid/nostruct-align/1vid.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32757/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.259644
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pnkB
id: 1pnkB   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pnkB/nostruct-align/1pnkB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pnkB/nostruct-align/1pnkB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pnkB/nostruct-align/1pnkB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7989/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.206543
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ppfE
id: 1ppfE   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1ppfE/nostruct-align/1ppfE.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1ppfE/nostruct-align/1ppfE.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1ppfE/nostruct-align/1ppfE.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16039/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.647705
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qba
id: 1qba   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qba/nostruct-align/1qba.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qba/nostruct-align/1qba.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qba/nostruct-align/1qba.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32450/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.284546
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b2nA
id: 1b2nA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b2nA/nostruct-align/1b2nA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b2nA/nostruct-align/1b2nA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b2nA/nostruct-align/1b2nA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4609/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.745605
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sgpE
id: 1sgpE   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sgpE/nostruct-align/1sgpE.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sgpE/nostruct-align/1sgpE.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sgpE/nostruct-align/1sgpE.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10356/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.134644
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2vhbA
id: 2vhbA   alignment found: /projects/compbio/experiments/models.97/pdb/2v/2vhbA/nostruct-align/2vhbA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2v/2vhbA/nostruct-align/2vhbA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2v/2vhbA/nostruct-align/2vhbA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31542/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.248657
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hcz
id: 1hcz   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hcz/nostruct-align/1hcz.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hcz/nostruct-align/1hcz.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hcz/nostruct-align/1hcz.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27179/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.236572
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b8aA
id: 1b8aA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8aA/nostruct-align/1b8aA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8aA/nostruct-align/1b8aA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b8aA/nostruct-align/1b8aA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18890/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.485596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rh4
id: 1rh4   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rh4/nostruct-align/1rh4.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rh4/nostruct-align/1rh4.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rh4/nostruct-align/1rh4.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13080/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.838623
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rmg
id: 1rmg   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rmg/nostruct-align/1rmg.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rmg/nostruct-align/1rmg.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rmg/nostruct-align/1rmg.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14068/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -33.503540
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pscA
id: 1pscA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pscA/nostruct-align/1pscA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pscA/nostruct-align/1pscA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pscA/nostruct-align/1pscA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25799/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.102539
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pah
id: 1pah   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pah/nostruct-align/1pah.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pah/nostruct-align/1pah.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pah/nostruct-align/1pah.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31480/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.907715
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b8dA
id: 1b8dA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8dA/nostruct-align/1b8dA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8dA/nostruct-align/1b8dA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b8dA/nostruct-align/1b8dA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15098/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.680542
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1thm
id: 1thm   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1thm/nostruct-align/1thm.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1thm/nostruct-align/1thm.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1thm/nostruct-align/1thm.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13228/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -15.391602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1clxA
id: 1clxA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1clxA/nostruct-align/1clxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1clxA/nostruct-align/1clxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1clxA/nostruct-align/1clxA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19992/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.789551
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bhdA
id: 1bhdA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhdA/nostruct-align/1bhdA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhdA/nostruct-align/1bhdA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bhdA/nostruct-align/1bhdA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32527/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.016602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2atjA
id: 2atjA   alignment found: /projects/compbio/experiments/models.97/pdb/2a/2atjA/nostruct-align/2atjA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2atjA/nostruct-align/2atjA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2a/2atjA/nostruct-align/2atjA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20037/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.786621
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sftA
id: 1sftA   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sftA/nostruct-align/1sftA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sftA/nostruct-align/1sftA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sftA/nostruct-align/1sftA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6526/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.662598
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cgdA
id: 1cgdA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cgdA/nostruct-align/1cgdA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cgdA/nostruct-align/1cgdA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cgdA/nostruct-align/1cgdA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20496/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.514526
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aq6A
id: 1aq6A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aq6A/nostruct-align/1aq6A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aq6A/nostruct-align/1aq6A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aq6A/nostruct-align/1aq6A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7679/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.606567
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nsj
id: 1nsj   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nsj/nostruct-align/1nsj.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nsj/nostruct-align/1nsj.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nsj/nostruct-align/1nsj.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-204/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.247681
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1adoA
id: 1adoA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1adoA/nostruct-align/1adoA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1adoA/nostruct-align/1adoA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1adoA/nostruct-align/1adoA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10218/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.817627
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mdl
id: 1mdl   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mdl/nostruct-align/1mdl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mdl/nostruct-align/1mdl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mdl/nostruct-align/1mdl.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1354/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.913696
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2apr
id: 2apr   alignment found: /projects/compbio/experiments/models.97/pdb/2a/2apr/nostruct-align/2apr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2apr/nostruct-align/2apr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2a/2apr/nostruct-align/2apr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16896/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.122559
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ecfA
id: 1ecfA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ecfA/nostruct-align/1ecfA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ecfA/nostruct-align/1ecfA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1ecfA/nostruct-align/1ecfA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31454/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.756592
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1np1A
id: 1np1A   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1np1A/nostruct-align/1np1A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1np1A/nostruct-align/1np1A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1np1A/nostruct-align/1np1A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-736/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.482544
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bhe
id: 1bhe   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhe/nostruct-align/1bhe.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhe/nostruct-align/1bhe.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bhe/nostruct-align/1bhe.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4921/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -22.114624
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1latA
id: 1latA   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1latA/nostruct-align/1latA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1latA/nostruct-align/1latA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1latA/nostruct-align/1latA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28190/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.825562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ayfA
id: 1ayfA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ayfA/nostruct-align/1ayfA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ayfA/nostruct-align/1ayfA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ayfA/nostruct-align/1ayfA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3184/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.814697
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a34A
id: 1a34A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a34A/nostruct-align/1a34A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a34A/nostruct-align/1a34A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a34A/nostruct-align/1a34A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9169/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.056519
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cot
id: 1cot   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cot/nostruct-align/1cot.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cot/nostruct-align/1cot.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cot/nostruct-align/1cot.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1510/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.988647
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 8prkA
id: 8prkA   alignment found: /projects/compbio/experiments/models.97/pdb/8p/8prkA/nostruct-align/8prkA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/8p/8prkA/nostruct-align/8prkA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/8p/8prkA/nostruct-align/8prkA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18738/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.246704
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dmr
id: 1dmr   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dmr/nostruct-align/1dmr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dmr/nostruct-align/1dmr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dmr/nostruct-align/1dmr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6225/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.326660
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gsa
id: 1gsa   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gsa/nostruct-align/1gsa.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gsa/nostruct-align/1gsa.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gsa/nostruct-align/1gsa.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5633/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.851562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1wdnA
id: 1wdnA   alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wdnA/nostruct-align/1wdnA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wdnA/nostruct-align/1wdnA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1w/1wdnA/nostruct-align/1wdnA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32309/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.231689
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mfiA
id: 1mfiA   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mfiA/nostruct-align/1mfiA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mfiA/nostruct-align/1mfiA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mfiA/nostruct-align/1mfiA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6287/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.321533
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1danT
id: 1danT   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1danT/nostruct-align/1danT.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1danT/nostruct-align/1danT.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1danT/nostruct-align/1danT.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14919/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.104492
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1danU
id: 1danU   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1danU/nostruct-align/1danU.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1danU/nostruct-align/1danU.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1danU/nostruct-align/1danU.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32605/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.952637
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1jfrA
id: 1jfrA   alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jfrA/nostruct-align/1jfrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jfrA/nostruct-align/1jfrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1j/1jfrA/nostruct-align/1jfrA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17579/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.882690
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 7taa
id: 7taa   alignment found: /projects/compbio/experiments/models.97/pdb/7t/7taa/nostruct-align/7taa.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/7t/7taa/nostruct-align/7taa.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/7t/7taa/nostruct-align/7taa.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17114/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.193604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tf4A
id: 1tf4A   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tf4A/nostruct-align/1tf4A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tf4A/nostruct-align/1tf4A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tf4A/nostruct-align/1tf4A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7222/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -21.871582
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1co6A
id: 1co6A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1co6A/nostruct-align/1co6A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1co6A/nostruct-align/1co6A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1co6A/nostruct-align/1co6A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21051/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.790649
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b2sD
id: 1b2sD   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b2sD/nostruct-align/1b2sD.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b2sD/nostruct-align/1b2sD.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b2sD/nostruct-align/1b2sD.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-15426/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.431519
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1puc
id: 1puc   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1puc/nostruct-align/1puc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1puc/nostruct-align/1puc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1puc/nostruct-align/1puc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9226/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.626587
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sgt
id: 1sgt   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sgt/nostruct-align/1sgt.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sgt/nostruct-align/1sgt.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sgt/nostruct-align/1sgt.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10122/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.125610
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1apyB
id: 1apyB   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apyB/nostruct-align/1apyB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apyB/nostruct-align/1apyB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1apyB/nostruct-align/1apyB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31186/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.764648
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1danH
id: 1danH   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1danH/nostruct-align/1danH.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1danH/nostruct-align/1danH.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1danH/nostruct-align/1danH.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4203/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.564697
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1apyA
id: 1apyA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apyA/nostruct-align/1apyA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apyA/nostruct-align/1apyA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1apyA/nostruct-align/1apyA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21837/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.659546
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a44
id: 1a44   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a44/nostruct-align/1a44.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a44/nostruct-align/1a44.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a44/nostruct-align/1a44.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27687/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.820679
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fce
id: 1fce   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fce/nostruct-align/1fce.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fce/nostruct-align/1fce.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fce/nostruct-align/1fce.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27186/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.816650
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1jdw
id: 1jdw   alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jdw/nostruct-align/1jdw.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jdw/nostruct-align/1jdw.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1j/1jdw/nostruct-align/1jdw.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13085/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.369629
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fua
id: 1fua   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fua/nostruct-align/1fua.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fua/nostruct-align/1fua.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fua/nostruct-align/1fua.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28485/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.744629
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ir3A
id: 1ir3A   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ir3A/nostruct-align/1ir3A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ir3A/nostruct-align/1ir3A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1ir3A/nostruct-align/1ir3A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11760/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.156494
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2cthA
id: 2cthA   alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cthA/nostruct-align/2cthA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cthA/nostruct-align/2cthA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2c/2cthA/nostruct-align/2cthA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20372/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.791626
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pch
id: 1pch   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pch/nostruct-align/1pch.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pch/nostruct-align/1pch.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pch/nostruct-align/1pch.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16622/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.486572
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bif
id: 1bif   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bif/nostruct-align/1bif.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bif/nostruct-align/1bif.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bif/nostruct-align/1bif.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1103/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.023560
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3tss
id: 3tss   alignment found: /projects/compbio/experiments/models.97/pdb/3t/3tss/nostruct-align/3tss.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3t/3tss/nostruct-align/3tss.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3t/3tss/nostruct-align/3tss.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10531/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.178589
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dkzA
id: 1dkzA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dkzA/nostruct-align/1dkzA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dkzA/nostruct-align/1dkzA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dkzA/nostruct-align/1dkzA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21094/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.718628
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ihsI
id: 1ihsI   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ihsI/nostruct-align/1ihsI.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ihsI/nostruct-align/1ihsI.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1ihsI/nostruct-align/1ihsI.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18415/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.927612
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mkaA
id: 1mkaA   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mkaA/nostruct-align/1mkaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mkaA/nostruct-align/1mkaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mkaA/nostruct-align/1mkaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16513/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.930542
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pud
id: 1pud   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pud/nostruct-align/1pud.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pud/nostruct-align/1pud.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pud/nostruct-align/1pud.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20818/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.950562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1akeA
id: 1akeA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1akeA/nostruct-align/1akeA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1akeA/nostruct-align/1akeA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1akeA/nostruct-align/1akeA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24081/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.828491
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ltnA
id: 2ltnA   alignment found: /projects/compbio/experiments/models.97/pdb/2l/2ltnA/nostruct-align/2ltnA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2ltnA/nostruct-align/2ltnA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2l/2ltnA/nostruct-align/2ltnA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3730/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.982666
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a53
id: 1a53   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a53/nostruct-align/1a53.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a53/nostruct-align/1a53.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a53/nostruct-align/1a53.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-404/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.108521
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hgxA
id: 1hgxA   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hgxA/nostruct-align/1hgxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hgxA/nostruct-align/1hgxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hgxA/nostruct-align/1hgxA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15926/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.510620
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1brt
id: 1brt   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brt/nostruct-align/1brt.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brt/nostruct-align/1brt.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1brt/nostruct-align/1brt.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16512/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.675537
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a8l
id: 1a8l   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8l/nostruct-align/1a8l.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8l/nostruct-align/1a8l.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a8l/nostruct-align/1a8l.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16821/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.179688
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3cms
id: 3cms   alignment found: /projects/compbio/experiments/models.97/pdb/3c/3cms/nostruct-align/3cms.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3cms/nostruct-align/3cms.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3c/3cms/nostruct-align/3cms.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32532/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.623657
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1memA
id: 1memA   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1memA/nostruct-align/1memA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1memA/nostruct-align/1memA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1memA/nostruct-align/1memA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20899/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.939575
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b25A
id: 1b25A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b25A/nostruct-align/1b25A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b25A/nostruct-align/1b25A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b25A/nostruct-align/1b25A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29362/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.105591
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hml
id: 1hml   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hml/nostruct-align/1hml.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hml/nostruct-align/1hml.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hml/nostruct-align/1hml.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15767/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.394531
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ltnB
id: 2ltnB   alignment found: /projects/compbio/experiments/models.97/pdb/2l/2ltnB/nostruct-align/2ltnB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2ltnB/nostruct-align/2ltnB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2l/2ltnB/nostruct-align/2ltnB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17405/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.596680
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b2vA
id: 1b2vA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b2vA/nostruct-align/1b2vA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b2vA/nostruct-align/1b2vA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b2vA/nostruct-align/1b2vA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-389/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.392578
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ltsC
id: 1ltsC   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1ltsC/nostruct-align/1ltsC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1ltsC/nostruct-align/1ltsC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1ltsC/nostruct-align/1ltsC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26573/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.389648
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bd3A
id: 1bd3A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bd3A/nostruct-align/1bd3A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bd3A/nostruct-align/1bd3A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bd3A/nostruct-align/1bd3A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4202/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.728638
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ltsA
id: 1ltsA   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1ltsA/nostruct-align/1ltsA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1ltsA/nostruct-align/1ltsA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1ltsA/nostruct-align/1ltsA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10139/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.048584
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cbs
id: 1cbs   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cbs/nostruct-align/1cbs.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cbs/nostruct-align/1cbs.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cbs/nostruct-align/1cbs.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-412/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.230591
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2cxbA
id: 2cxbA   alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cxbA/nostruct-align/2cxbA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cxbA/nostruct-align/2cxbA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2c/2cxbA/nostruct-align/2cxbA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18769/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.395508
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lkfA
id: 1lkfA   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lkfA/nostruct-align/1lkfA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lkfA/nostruct-align/1lkfA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lkfA/nostruct-align/1lkfA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15444/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.957520
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2cbp
id: 2cbp   alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cbp/nostruct-align/2cbp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cbp/nostruct-align/2cbp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2c/2cbp/nostruct-align/2cbp.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13215/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.134644
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ntn
id: 1ntn   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1ntn/nostruct-align/1ntn.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1ntn/nostruct-align/1ntn.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1ntn/nostruct-align/1ntn.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24511/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.766602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ptd
id: 2ptd   alignment found: /projects/compbio/experiments/models.97/pdb/2p/2ptd/nostruct-align/2ptd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2ptd/nostruct-align/2ptd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2p/2ptd/nostruct-align/2ptd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6422/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.386597
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ail
id: 1ail   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ail/nostruct-align/1ail.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ail/nostruct-align/1ail.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ail/nostruct-align/1ail.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7292/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.263550
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 8tlnE
id: 8tlnE   alignment found: /projects/compbio/experiments/models.97/pdb/8t/8tlnE/nostruct-align/8tlnE.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/8t/8tlnE/nostruct-align/8tlnE.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/8t/8tlnE/nostruct-align/8tlnE.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22898/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.295654
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gseA
id: 1gseA   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gseA/nostruct-align/1gseA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gseA/nostruct-align/1gseA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gseA/nostruct-align/1gseA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9225/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.895630
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bkcE
id: 1bkcE   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkcE/nostruct-align/1bkcE.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkcE/nostruct-align/1bkcE.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bkcE/nostruct-align/1bkcE.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10835/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.540527
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cghA
id: 1cghA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cghA/nostruct-align/1cghA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cghA/nostruct-align/1cghA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cghA/nostruct-align/1cghA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5529/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.676514
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3tdt
id: 3tdt   alignment found: /projects/compbio/experiments/models.97/pdb/3t/3tdt/nostruct-align/3tdt.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3t/3tdt/nostruct-align/3tdt.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3t/3tdt/nostruct-align/3tdt.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1216/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.807617
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2dorA
id: 2dorA   alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dorA/nostruct-align/2dorA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dorA/nostruct-align/2dorA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2d/2dorA/nostruct-align/2dorA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-948/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.752686
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tux
id: 1tux   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tux/nostruct-align/1tux.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tux/nostruct-align/1tux.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tux/nostruct-align/1tux.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29160/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.060547
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dekA
id: 1dekA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dekA/nostruct-align/1dekA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dekA/nostruct-align/1dekA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dekA/nostruct-align/1dekA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30158/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.118530
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1zrn
id: 1zrn   alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zrn/nostruct-align/1zrn.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zrn/nostruct-align/1zrn.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1z/1zrn/nostruct-align/1zrn.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15751/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.297607
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1esl
id: 1esl   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1esl/nostruct-align/1esl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1esl/nostruct-align/1esl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1esl/nostruct-align/1esl.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9588/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.215576
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lldA
id: 1lldA   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lldA/nostruct-align/1lldA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lldA/nostruct-align/1lldA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lldA/nostruct-align/1lldA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17370/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.479614
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1blxA
id: 1blxA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1blxA/nostruct-align/1blxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1blxA/nostruct-align/1blxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1blxA/nostruct-align/1blxA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6156/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.417603
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1spgA
id: 1spgA   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1spgA/nostruct-align/1spgA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1spgA/nostruct-align/1spgA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1spgA/nostruct-align/1spgA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-12822/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.354614
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1spgB
id: 1spgB   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1spgB/nostruct-align/1spgB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1spgB/nostruct-align/1spgB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1spgB/nostruct-align/1spgB.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-13981/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.064575
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1yghA
id: 1yghA   alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yghA/nostruct-align/1yghA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yghA/nostruct-align/1yghA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1y/1yghA/nostruct-align/1yghA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6769/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.898560
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ax0
id: 1ax0   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ax0/nostruct-align/1ax0.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ax0/nostruct-align/1ax0.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ax0/nostruct-align/1ax0.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19165/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.073608
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bv1
id: 1bv1   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bv1/nostruct-align/1bv1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bv1/nostruct-align/1bv1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bv1/nostruct-align/1bv1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10465/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.534546
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1obpA
id: 1obpA   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1obpA/nostruct-align/1obpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1obpA/nostruct-align/1obpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1obpA/nostruct-align/1obpA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13292/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.284668
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 7fd1
id: 7fd1   alignment found: /projects/compbio/experiments/models.97/pdb/7f/7fd1/nostruct-align/7fd1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/7f/7fd1/nostruct-align/7fd1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/7f/7fd1/nostruct-align/7fd1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30170/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.509644
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2matA
id: 2matA   alignment found: /projects/compbio/experiments/models.97/pdb/2m/2matA/nostruct-align/2matA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2matA/nostruct-align/2matA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2m/2matA/nostruct-align/2matA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26410/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.076660
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1oyc
id: 1oyc   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1oyc/nostruct-align/1oyc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1oyc/nostruct-align/1oyc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1oyc/nostruct-align/1oyc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13530/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.249634
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1que
id: 1que   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1que/nostruct-align/1que.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1que/nostruct-align/1que.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1que/nostruct-align/1que.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4681/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.770508
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a48
id: 1a48   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a48/nostruct-align/1a48.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a48/nostruct-align/1a48.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a48/nostruct-align/1a48.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23681/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.390625
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ceo
id: 1ceo   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ceo/nostruct-align/1ceo.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ceo/nostruct-align/1ceo.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1ceo/nostruct-align/1ceo.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1858/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -16.036621
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bg0
id: 1bg0   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bg0/nostruct-align/1bg0.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bg0/nostruct-align/1bg0.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bg0/nostruct-align/1bg0.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28635/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.858643
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bxkA
id: 1bxkA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxkA/nostruct-align/1bxkA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxkA/nostruct-align/1bxkA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bxkA/nostruct-align/1bxkA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15762/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.487671
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aim
id: 1aim   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aim/nostruct-align/1aim.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aim/nostruct-align/1aim.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aim/nostruct-align/1aim.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16883/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.295532
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pprM
id: 1pprM   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pprM/nostruct-align/1pprM.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pprM/nostruct-align/1pprM.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pprM/nostruct-align/1pprM.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30391/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.943604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fwcA
id: 1fwcA   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fwcA/nostruct-align/1fwcA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fwcA/nostruct-align/1fwcA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fwcA/nostruct-align/1fwcA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16943/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.766602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4bcl
id: 4bcl   alignment found: /projects/compbio/experiments/models.97/pdb/4b/4bcl/nostruct-align/4bcl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/4b/4bcl/nostruct-align/4bcl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/4b/4bcl/nostruct-align/4bcl.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5481/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.241577
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a58
id: 1a58   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a58/nostruct-align/1a58.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a58/nostruct-align/1a58.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a58/nostruct-align/1a58.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14135/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.194580
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fwcB
id: 1fwcB   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fwcB/nostruct-align/1fwcB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fwcB/nostruct-align/1fwcB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fwcB/nostruct-align/1fwcB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3529/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.601562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aocA
id: 1aocA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aocA/nostruct-align/1aocA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aocA/nostruct-align/1aocA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aocA/nostruct-align/1aocA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10576/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.596680
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1btu
id: 1btu   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1btu/nostruct-align/1btu.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1btu/nostruct-align/1btu.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1btu/nostruct-align/1btu.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8104/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.841553
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1eso
id: 1eso   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eso/nostruct-align/1eso.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eso/nostruct-align/1eso.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1eso/nostruct-align/1eso.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32424/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.881592
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a4yB
id: 1a4yB   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a4yB/nostruct-align/1a4yB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a4yB/nostruct-align/1a4yB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a4yB/nostruct-align/1a4yB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14009/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.093506
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bgp
id: 1bgp   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bgp/nostruct-align/1bgp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bgp/nostruct-align/1bgp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bgp/nostruct-align/1bgp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23142/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.963623
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dun
id: 1dun   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dun/nostruct-align/1dun.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dun/nostruct-align/1dun.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dun/nostruct-align/1dun.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32370/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.953613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1who
id: 1who   alignment found: /projects/compbio/experiments/models.97/pdb/1w/1who/nostruct-align/1who.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1who/nostruct-align/1who.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1w/1who/nostruct-align/1who.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18760/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.505615
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tafA
id: 1tafA   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tafA/nostruct-align/1tafA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tafA/nostruct-align/1tafA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tafA/nostruct-align/1tafA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26948/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.836548
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tafB
id: 1tafB   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tafB/nostruct-align/1tafB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tafB/nostruct-align/1tafB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tafB/nostruct-align/1tafB.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17821/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.641602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1jkmB
id: 1jkmB   alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jkmB/nostruct-align/1jkmB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jkmB/nostruct-align/1jkmB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1j/1jkmB/nostruct-align/1jkmB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16336/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.941528
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a8q
id: 1a8q   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8q/nostruct-align/1a8q.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8q/nostruct-align/1a8q.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a8q/nostruct-align/1a8q.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20865/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.538574
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cb8A
id: 1cb8A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cb8A/nostruct-align/1cb8A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cb8A/nostruct-align/1cb8A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cb8A/nostruct-align/1cb8A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2719/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.568604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1xer
id: 1xer   alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xer/nostruct-align/1xer.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xer/nostruct-align/1xer.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1x/1xer/nostruct-align/1xer.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2482/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.438599
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1difA
id: 1difA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1difA/nostruct-align/1difA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1difA/nostruct-align/1difA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1difA/nostruct-align/1difA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10541/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.929565
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2prk
id: 2prk   alignment found: /projects/compbio/experiments/models.97/pdb/2p/2prk/nostruct-align/2prk.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2prk/nostruct-align/2prk.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2p/2prk/nostruct-align/2prk.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9784/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -15.400635
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ayoA
id: 1ayoA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ayoA/nostruct-align/1ayoA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ayoA/nostruct-align/1ayoA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ayoA/nostruct-align/1ayoA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25640/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.296509
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2shpA
id: 2shpA   alignment found: /projects/compbio/experiments/models.97/pdb/2s/2shpA/nostruct-align/2shpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2shpA/nostruct-align/2shpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2s/2shpA/nostruct-align/2shpA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1599/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.200562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1iscA
id: 1iscA   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iscA/nostruct-align/1iscA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iscA/nostruct-align/1iscA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1iscA/nostruct-align/1iscA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6755/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.935547
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bu5A
id: 1bu5A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bu5A/nostruct-align/1bu5A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bu5A/nostruct-align/1bu5A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bu5A/nostruct-align/1bu5A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28389/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.047607
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1af7
id: 1af7   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1af7/nostruct-align/1af7.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1af7/nostruct-align/1af7.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1af7/nostruct-align/1af7.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5516/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.381592
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fwcC
id: 1fwcC   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fwcC/nostruct-align/1fwcC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fwcC/nostruct-align/1fwcC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fwcC/nostruct-align/1fwcC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27320/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.387573
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a4yA
id: 1a4yA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a4yA/nostruct-align/1a4yA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a4yA/nostruct-align/1a4yA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a4yA/nostruct-align/1a4yA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11952/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.931641
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qqp4
id: 1qqp4   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qqp4/nostruct-align/1qqp4.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qqp4/nostruct-align/1qqp4.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qqp4/nostruct-align/1qqp4.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12392/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.540527
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3pcgA
id: 3pcgA   alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pcgA/nostruct-align/3pcgA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pcgA/nostruct-align/3pcgA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3p/3pcgA/nostruct-align/3pcgA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8937/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.606567
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ae9A
id: 1ae9A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ae9A/nostruct-align/1ae9A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ae9A/nostruct-align/1ae9A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ae9A/nostruct-align/1ae9A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8469/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.069702
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qqp1
id: 1qqp1   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qqp1/nostruct-align/1qqp1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qqp1/nostruct-align/1qqp1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qqp1/nostruct-align/1qqp1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15710/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.795654
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ecpA
id: 1ecpA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ecpA/nostruct-align/1ecpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ecpA/nostruct-align/1ecpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1ecpA/nostruct-align/1ecpA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29599/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.113525
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3pcgM
id: 3pcgM   alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pcgM/nostruct-align/3pcgM.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pcgM/nostruct-align/3pcgM.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3p/3pcgM/nostruct-align/3pcgM.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9833/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.653687
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qqp3
id: 1qqp3   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qqp3/nostruct-align/1qqp3.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qqp3/nostruct-align/1qqp3.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qqp3/nostruct-align/1qqp3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8557/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.543579
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a7tA
id: 1a7tA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a7tA/nostruct-align/1a7tA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a7tA/nostruct-align/1a7tA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a7tA/nostruct-align/1a7tA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18315/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.673584
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2kinA
id: 2kinA   alignment found: /projects/compbio/experiments/models.97/pdb/2k/2kinA/nostruct-align/2kinA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2k/2kinA/nostruct-align/2kinA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2k/2kinA/nostruct-align/2kinA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29518/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.099609
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2kinB
id: 2kinB   alignment found: /projects/compbio/experiments/models.97/pdb/2k/2kinB/nostruct-align/2kinB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2k/2kinB/nostruct-align/2kinB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2k/2kinB/nostruct-align/2kinB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13821/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.736572
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qqp2
id: 1qqp2   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qqp2/nostruct-align/1qqp2.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qqp2/nostruct-align/1qqp2.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qqp2/nostruct-align/1qqp2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27690/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.180664
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mho
id: 1mho   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mho/nostruct-align/1mho.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mho/nostruct-align/1mho.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mho/nostruct-align/1mho.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30236/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.787598
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nhkL
id: 1nhkL   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nhkL/nostruct-align/1nhkL.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nhkL/nostruct-align/1nhkL.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nhkL/nostruct-align/1nhkL.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10994/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.130615
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sltA
id: 1sltA   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sltA/nostruct-align/1sltA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sltA/nostruct-align/1sltA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sltA/nostruct-align/1sltA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13573/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.286621
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bf2
id: 1bf2   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bf2/nostruct-align/1bf2.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bf2/nostruct-align/1bf2.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bf2/nostruct-align/1bf2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12662/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -17.073608
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fxd
id: 1fxd   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fxd/nostruct-align/1fxd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fxd/nostruct-align/1fxd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fxd/nostruct-align/1fxd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26607/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.814697
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b65A
id: 1b65A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b65A/nostruct-align/1b65A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b65A/nostruct-align/1b65A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b65A/nostruct-align/1b65A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8527/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.687622
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1smrA
id: 1smrA   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1smrA/nostruct-align/1smrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1smrA/nostruct-align/1smrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1smrA/nostruct-align/1smrA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32509/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.892578
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1opy
id: 1opy   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1opy/nostruct-align/1opy.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1opy/nostruct-align/1opy.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1opy/nostruct-align/1opy.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1554/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.722534
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hmt
id: 1hmt   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hmt/nostruct-align/1hmt.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hmt/nostruct-align/1hmt.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hmt/nostruct-align/1hmt.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18799/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.499634
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fas
id: 1fas   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fas/nostruct-align/1fas.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fas/nostruct-align/1fas.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fas/nostruct-align/1fas.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32638/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.818604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3gcb
id: 3gcb   alignment found: /projects/compbio/experiments/models.97/pdb/3g/3gcb/nostruct-align/3gcb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3g/3gcb/nostruct-align/3gcb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3g/3gcb/nostruct-align/3gcb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22524/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.335571
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2tysB
id: 2tysB   alignment found: /projects/compbio/experiments/models.97/pdb/2t/2tysB/nostruct-align/2tysB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2tysB/nostruct-align/2tysB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2t/2tysB/nostruct-align/2tysB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22751/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.370605
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rom
id: 1rom   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rom/nostruct-align/1rom.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rom/nostruct-align/1rom.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rom/nostruct-align/1rom.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3894/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.195557
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1alkA
id: 1alkA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1alkA/nostruct-align/1alkA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1alkA/nostruct-align/1alkA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1alkA/nostruct-align/1alkA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32299/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.603638
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2tysA
id: 2tysA   alignment found: /projects/compbio/experiments/models.97/pdb/2t/2tysA/nostruct-align/2tysA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2tysA/nostruct-align/2tysA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2t/2tysA/nostruct-align/2tysA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24010/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.317627
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2pia
id: 2pia   alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pia/nostruct-align/2pia.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pia/nostruct-align/2pia.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2p/2pia/nostruct-align/2pia.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18200/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.296631
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aoeA
id: 1aoeA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoeA/nostruct-align/1aoeA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoeA/nostruct-align/1aoeA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aoeA/nostruct-align/1aoeA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19302/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.164673
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aj2
id: 1aj2   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aj2/nostruct-align/1aj2.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aj2/nostruct-align/1aj2.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aj2/nostruct-align/1aj2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13045/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.952515
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dhkB
id: 1dhkB   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dhkB/nostruct-align/1dhkB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dhkB/nostruct-align/1dhkB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dhkB/nostruct-align/1dhkB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20340/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.499634
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1han
id: 1han   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1han/nostruct-align/1han.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1han/nostruct-align/1han.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1han/nostruct-align/1han.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2009/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.030640
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bio
id: 1bio   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bio/nostruct-align/1bio.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bio/nostruct-align/1bio.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bio/nostruct-align/1bio.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16149/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.562622
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ddt
id: 1ddt   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1ddt/nostruct-align/1ddt.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1ddt/nostruct-align/1ddt.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1ddt/nostruct-align/1ddt.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32407/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.997681
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pjcA
id: 1pjcA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pjcA/nostruct-align/1pjcA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pjcA/nostruct-align/1pjcA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pjcA/nostruct-align/1pjcA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11355/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.962646
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1chmA
id: 1chmA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1chmA/nostruct-align/1chmA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1chmA/nostruct-align/1chmA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1chmA/nostruct-align/1chmA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20731/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.759644
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4sli
id: 4sli   alignment found: /projects/compbio/experiments/models.97/pdb/4s/4sli/nostruct-align/4sli.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/4s/4sli/nostruct-align/4sli.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/4s/4sli/nostruct-align/4sli.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9334/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -18.577515
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a78A
id: 1a78A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a78A/nostruct-align/1a78A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a78A/nostruct-align/1a78A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a78A/nostruct-align/1a78A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8571/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.261597
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1uag
id: 1uag   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uag/nostruct-align/1uag.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uag/nostruct-align/1uag.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1uag/nostruct-align/1uag.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23846/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.909668
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ahtH
id: 1ahtH   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ahtH/nostruct-align/1ahtH.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ahtH/nostruct-align/1ahtH.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ahtH/nostruct-align/1ahtH.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23056/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.092529
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1azqA
id: 1azqA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1azqA/nostruct-align/1azqA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1azqA/nostruct-align/1azqA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1azqA/nostruct-align/1azqA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31611/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.939697
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1obwA
id: 1obwA   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1obwA/nostruct-align/1obwA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1obwA/nostruct-align/1obwA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1obwA/nostruct-align/1obwA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17664/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.758667
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1yna
id: 1yna   alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yna/nostruct-align/1yna.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yna/nostruct-align/1yna.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1y/1yna/nostruct-align/1yna.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14707/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.091675
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1svb
id: 1svb   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1svb/nostruct-align/1svb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1svb/nostruct-align/1svb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1svb/nostruct-align/1svb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31565/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.728638
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ak1
id: 1ak1   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ak1/nostruct-align/1ak1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ak1/nostruct-align/1ak1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ak1/nostruct-align/1ak1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28519/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.889648
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2fha
id: 2fha   alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fha/nostruct-align/2fha.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fha/nostruct-align/2fha.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2f/2fha/nostruct-align/2fha.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1646/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.051514
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1xyn
id: 1xyn   alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xyn/nostruct-align/1xyn.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xyn/nostruct-align/1xyn.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1x/1xyn/nostruct-align/1xyn.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-673/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.279663
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1be9A
id: 1be9A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be9A/nostruct-align/1be9A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be9A/nostruct-align/1be9A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1be9A/nostruct-align/1be9A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19373/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.973633
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cdwA
id: 1cdwA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdwA/nostruct-align/1cdwA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdwA/nostruct-align/1cdwA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cdwA/nostruct-align/1cdwA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13494/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.570679
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a8vA
id: 1a8vA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8vA/nostruct-align/1a8vA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8vA/nostruct-align/1a8vA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a8vA/nostruct-align/1a8vA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13539/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.168579
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1by2
id: 1by2   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1by2/nostruct-align/1by2.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1by2/nostruct-align/1by2.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1by2/nostruct-align/1by2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10916/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.305542
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1scjB
id: 1scjB   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1scjB/nostruct-align/1scjB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1scjB/nostruct-align/1scjB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1scjB/nostruct-align/1scjB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17368/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.472656
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ema
id: 1ema   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ema/nostruct-align/1ema.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ema/nostruct-align/1ema.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1ema/nostruct-align/1ema.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15141/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.300537
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ag9A
id: 1ag9A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ag9A/nostruct-align/1ag9A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ag9A/nostruct-align/1ag9A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ag9A/nostruct-align/1ag9A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3371/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.290649
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ton
id: 1ton   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1ton/nostruct-align/1ton.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1ton/nostruct-align/1ton.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1ton/nostruct-align/1ton.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12007/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.820557
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1burA
id: 1burA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1burA/nostruct-align/1burA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1burA/nostruct-align/1burA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1burA/nostruct-align/1burA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12463/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.987549
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b93A
id: 1b93A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b93A/nostruct-align/1b93A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b93A/nostruct-align/1b93A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b93A/nostruct-align/1b93A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10348/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.594604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2dtr
id: 2dtr   alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dtr/nostruct-align/2dtr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dtr/nostruct-align/2dtr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2d/2dtr/nostruct-align/2dtr.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1793/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.381714
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1wba
id: 1wba   alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wba/nostruct-align/1wba.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wba/nostruct-align/1wba.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1w/1wba/nostruct-align/1wba.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32429/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.069580
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1whtA
id: 1whtA   alignment found: /projects/compbio/experiments/models.97/pdb/1w/1whtA/nostruct-align/1whtA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1whtA/nostruct-align/1whtA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1w/1whtA/nostruct-align/1whtA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29956/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.857544
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cewI
id: 1cewI   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cewI/nostruct-align/1cewI.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cewI/nostruct-align/1cewI.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cewI/nostruct-align/1cewI.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14792/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.137573
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1whtB
id: 1whtB   alignment found: /projects/compbio/experiments/models.97/pdb/1w/1whtB/nostruct-align/1whtB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1whtB/nostruct-align/1whtB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1w/1whtB/nostruct-align/1whtB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6187/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.770508
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1wad
id: 1wad   alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wad/nostruct-align/1wad.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wad/nostruct-align/1wad.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1w/1wad/nostruct-align/1wad.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27898/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.986572
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pbv
id: 1pbv   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pbv/nostruct-align/1pbv.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pbv/nostruct-align/1pbv.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pbv/nostruct-align/1pbv.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7016/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.741577
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2pspA
id: 2pspA   alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pspA/nostruct-align/2pspA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pspA/nostruct-align/2pspA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2p/2pspA/nostruct-align/2pspA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14233/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.834595
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aiu
id: 1aiu   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aiu/nostruct-align/1aiu.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aiu/nostruct-align/1aiu.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aiu/nostruct-align/1aiu.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28309/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.995605
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bhtA
id: 1bhtA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhtA/nostruct-align/1bhtA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhtA/nostruct-align/1bhtA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bhtA/nostruct-align/1bhtA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13922/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.509521
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1zfpE
id: 1zfpE   alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zfpE/nostruct-align/1zfpE.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zfpE/nostruct-align/1zfpE.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1z/1zfpE/nostruct-align/1zfpE.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13302/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.308594
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lml
id: 1lml   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lml/nostruct-align/1lml.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lml/nostruct-align/1lml.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lml/nostruct-align/1lml.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19143/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.091553
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1icjA
id: 1icjA   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1icjA/nostruct-align/1icjA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1icjA/nostruct-align/1icjA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1icjA/nostruct-align/1icjA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2605/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.508545
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mngA
id: 1mngA   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mngA/nostruct-align/1mngA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mngA/nostruct-align/1mngA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mngA/nostruct-align/1mngA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-798/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.587524
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1paz
id: 1paz   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1paz/nostruct-align/1paz.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1paz/nostruct-align/1paz.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1paz/nostruct-align/1paz.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22073/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.929565
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a88A
id: 1a88A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a88A/nostruct-align/1a88A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a88A/nostruct-align/1a88A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a88A/nostruct-align/1a88A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31764/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.957642
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gox
id: 1gox   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gox/nostruct-align/1gox.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gox/nostruct-align/1gox.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gox/nostruct-align/1gox.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28156/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.955566
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pbwA
id: 1pbwA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pbwA/nostruct-align/1pbwA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pbwA/nostruct-align/1pbwA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pbwA/nostruct-align/1pbwA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15966/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.040527
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1eur
id: 1eur   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eur/nostruct-align/1eur.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eur/nostruct-align/1eur.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1eur/nostruct-align/1eur.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27881/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -16.782593
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 5csmA
id: 5csmA   alignment found: /projects/compbio/experiments/models.97/pdb/5c/5csmA/nostruct-align/5csmA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/5c/5csmA/nostruct-align/5csmA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/5c/5csmA/nostruct-align/5csmA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8053/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.064575
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pii
id: 1pii   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pii/nostruct-align/1pii.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pii/nostruct-align/1pii.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pii/nostruct-align/1pii.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16736/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.902588
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bxvA
id: 1bxvA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxvA/nostruct-align/1bxvA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxvA/nostruct-align/1bxvA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bxvA/nostruct-align/1bxvA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12874/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.585693
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1llp
id: 1llp   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1llp/nostruct-align/1llp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1llp/nostruct-align/1llp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1llp/nostruct-align/1llp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2264/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.658569
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bgvA
id: 1bgvA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bgvA/nostruct-align/1bgvA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bgvA/nostruct-align/1bgvA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bgvA/nostruct-align/1bgvA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10443/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.941650
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2mhr
id: 2mhr   alignment found: /projects/compbio/experiments/models.97/pdb/2m/2mhr/nostruct-align/2mhr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2mhr/nostruct-align/2mhr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2m/2mhr/nostruct-align/2mhr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3434/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.953613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1phm
id: 1phm   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1phm/nostruct-align/1phm.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1phm/nostruct-align/1phm.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1phm/nostruct-align/1phm.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17442/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.789551
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1prxA
id: 1prxA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1prxA/nostruct-align/1prxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1prxA/nostruct-align/1prxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1prxA/nostruct-align/1prxA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2731/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.507568
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1shdA
id: 1shdA   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1shdA/nostruct-align/1shdA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1shdA/nostruct-align/1shdA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1shdA/nostruct-align/1shdA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26469/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.461548
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vjw
id: 1vjw   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vjw/nostruct-align/1vjw.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vjw/nostruct-align/1vjw.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vjw/nostruct-align/1vjw.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4891/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.651611
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vls
id: 1vls   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vls/nostruct-align/1vls.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vls/nostruct-align/1vls.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vls/nostruct-align/1vls.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10134/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.659668
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2fcr
id: 2fcr   alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fcr/nostruct-align/2fcr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fcr/nostruct-align/2fcr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2f/2fcr/nostruct-align/2fcr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3700/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.020630
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 5pal
id: 5pal   alignment found: /projects/compbio/experiments/models.97/pdb/5p/5pal/nostruct-align/5pal.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/5p/5pal/nostruct-align/5pal.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/5p/5pal/nostruct-align/5pal.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21172/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.536621
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vsd
id: 1vsd   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vsd/nostruct-align/1vsd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vsd/nostruct-align/1vsd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vsd/nostruct-align/1vsd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29104/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.433594
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3csuA
id: 3csuA   alignment found: /projects/compbio/experiments/models.97/pdb/3c/3csuA/nostruct-align/3csuA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3csuA/nostruct-align/3csuA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3c/3csuA/nostruct-align/3csuA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20444/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.869629
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2nsyA
id: 2nsyA   alignment found: /projects/compbio/experiments/models.97/pdb/2n/2nsyA/nostruct-align/2nsyA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2n/2nsyA/nostruct-align/2nsyA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2n/2nsyA/nostruct-align/2nsyA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11405/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.288696
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2plc
id: 2plc   alignment found: /projects/compbio/experiments/models.97/pdb/2p/2plc/nostruct-align/2plc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2plc/nostruct-align/2plc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2p/2plc/nostruct-align/2plc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17632/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.256592
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aj8A
id: 1aj8A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aj8A/nostruct-align/1aj8A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aj8A/nostruct-align/1aj8A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aj8A/nostruct-align/1aj8A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11613/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.410645
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tvdA
id: 1tvdA   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tvdA/nostruct-align/1tvdA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tvdA/nostruct-align/1tvdA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tvdA/nostruct-align/1tvdA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27427/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.523560
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1myt
id: 1myt   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1myt/nostruct-align/1myt.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1myt/nostruct-align/1myt.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1myt/nostruct-align/1myt.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27387/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.647583
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fmb
id: 1fmb   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fmb/nostruct-align/1fmb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fmb/nostruct-align/1fmb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fmb/nostruct-align/1fmb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30495/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.335571
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2pii
id: 2pii   alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pii/nostruct-align/2pii.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pii/nostruct-align/2pii.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2p/2pii/nostruct-align/2pii.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8203/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.782593
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1jdc
id: 1jdc   alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jdc/nostruct-align/1jdc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jdc/nostruct-align/1jdc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1j/1jdc/nostruct-align/1jdc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-998/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -16.569580
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ayx
id: 1ayx   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ayx/nostruct-align/1ayx.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ayx/nostruct-align/1ayx.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ayx/nostruct-align/1ayx.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15425/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.087524
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fleI
id: 1fleI   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fleI/nostruct-align/1fleI.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fleI/nostruct-align/1fleI.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fleI/nostruct-align/1fleI.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5739/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.060547
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1opbA
id: 1opbA   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1opbA/nostruct-align/1opbA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1opbA/nostruct-align/1opbA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1opbA/nostruct-align/1opbA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2835/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.150635
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1udh
id: 1udh   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1udh/nostruct-align/1udh.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1udh/nostruct-align/1udh.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1udh/nostruct-align/1udh.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5264/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.786621
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bdb
id: 1bdb   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bdb/nostruct-align/1bdb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bdb/nostruct-align/1bdb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bdb/nostruct-align/1bdb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24884/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.355591
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tmy
id: 1tmy   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tmy/nostruct-align/1tmy.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tmy/nostruct-align/1tmy.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tmy/nostruct-align/1tmy.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17498/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.799561
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ak3A
id: 2ak3A   alignment found: /projects/compbio/experiments/models.97/pdb/2a/2ak3A/nostruct-align/2ak3A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2ak3A/nostruct-align/2ak3A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2a/2ak3A/nostruct-align/2ak3A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20195/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.120605
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cleA
id: 1cleA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cleA/nostruct-align/1cleA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cleA/nostruct-align/1cleA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cleA/nostruct-align/1cleA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22723/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.010620
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gctA
id: 1gctA   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gctA/nostruct-align/1gctA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gctA/nostruct-align/1gctA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gctA/nostruct-align/1gctA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8133/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.784668
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1msc
id: 1msc   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1msc/nostruct-align/1msc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1msc/nostruct-align/1msc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1msc/nostruct-align/1msc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8846/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.329712
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vom
id: 1vom   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vom/nostruct-align/1vom.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vom/nostruct-align/1vom.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vom/nostruct-align/1vom.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25251/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.175537
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1trkA
id: 1trkA   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1trkA/nostruct-align/1trkA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1trkA/nostruct-align/1trkA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1trkA/nostruct-align/1trkA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8456/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.376587
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bea
id: 1bea   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bea/nostruct-align/1bea.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bea/nostruct-align/1bea.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bea/nostruct-align/1bea.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2206/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.686646
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1wdcA
id: 1wdcA   alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wdcA/nostruct-align/1wdcA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wdcA/nostruct-align/1wdcA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1w/1wdcA/nostruct-align/1wdcA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22592/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.931641
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dyr
id: 1dyr   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dyr/nostruct-align/1dyr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dyr/nostruct-align/1dyr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dyr/nostruct-align/1dyr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32226/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.856567
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a3h
id: 1a3h   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a3h/nostruct-align/1a3h.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a3h/nostruct-align/1a3h.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a3h/nostruct-align/1a3h.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6922/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.456665
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1apmI
id: 1apmI   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apmI/nostruct-align/1apmI.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apmI/nostruct-align/1apmI.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1apmI/nostruct-align/1apmI.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11901/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.792603
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1wdcC
id: 1wdcC   alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wdcC/nostruct-align/1wdcC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wdcC/nostruct-align/1wdcC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1w/1wdcC/nostruct-align/1wdcC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31271/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.212646
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 5nul
id: 5nul   alignment found: /projects/compbio/experiments/models.97/pdb/5n/5nul/nostruct-align/5nul.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/5n/5nul/nostruct-align/5nul.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/5n/5nul/nostruct-align/5nul.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23524/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.967651
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1soxA
id: 1soxA   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1soxA/nostruct-align/1soxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1soxA/nostruct-align/1soxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1soxA/nostruct-align/1soxA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7176/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.431641
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1uok
id: 1uok   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uok/nostruct-align/1uok.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uok/nostruct-align/1uok.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1uok/nostruct-align/1uok.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6837/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -15.783569
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1furA
id: 1furA   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1furA/nostruct-align/1furA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1furA/nostruct-align/1furA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1furA/nostruct-align/1furA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9005/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.599609
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fnc
id: 1fnc   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fnc/nostruct-align/1fnc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fnc/nostruct-align/1fnc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fnc/nostruct-align/1fnc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15671/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.724609
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1f3z
id: 1f3z   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1f3z/nostruct-align/1f3z.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1f3z/nostruct-align/1f3z.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1f3z/nostruct-align/1f3z.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6334/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.971680
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1wdcB
id: 1wdcB   alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wdcB/nostruct-align/1wdcB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wdcB/nostruct-align/1wdcB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1w/1wdcB/nostruct-align/1wdcB.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20619/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.684570
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2dhqA
id: 2dhqA   alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dhqA/nostruct-align/2dhqA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dhqA/nostruct-align/2dhqA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2d/2dhqA/nostruct-align/2dhqA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10416/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.922607
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1iow
id: 1iow   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iow/nostruct-align/1iow.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iow/nostruct-align/1iow.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1iow/nostruct-align/1iow.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1069/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.304565
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1iso
id: 1iso   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iso/nostruct-align/1iso.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iso/nostruct-align/1iso.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1iso/nostruct-align/1iso.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19355/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.773682
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cojA
id: 1cojA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cojA/nostruct-align/1cojA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cojA/nostruct-align/1cojA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cojA/nostruct-align/1cojA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32505/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.703613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1theA
id: 1theA   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1theA/nostruct-align/1theA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1theA/nostruct-align/1theA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1theA/nostruct-align/1theA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25980/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.576538
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cl1A
id: 1cl1A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cl1A/nostruct-align/1cl1A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cl1A/nostruct-align/1cl1A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cl1A/nostruct-align/1cl1A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-913/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.249634
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1alvA
id: 1alvA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1alvA/nostruct-align/1alvA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1alvA/nostruct-align/1alvA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1alvA/nostruct-align/1alvA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22546/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.131592
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vfaB
id: 1vfaB   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vfaB/nostruct-align/1vfaB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vfaB/nostruct-align/1vfaB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vfaB/nostruct-align/1vfaB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4335/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.932495
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3prn
id: 3prn   alignment found: /projects/compbio/experiments/models.97/pdb/3p/3prn/nostruct-align/3prn.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3prn/nostruct-align/3prn.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3p/3prn/nostruct-align/3prn.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14564/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -25.419556
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 7aatA
id: 7aatA   alignment found: /projects/compbio/experiments/models.97/pdb/7a/7aatA/nostruct-align/7aatA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/7a/7aatA/nostruct-align/7aatA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/7a/7aatA/nostruct-align/7aatA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16864/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.492554
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1kao
id: 1kao   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kao/nostruct-align/1kao.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kao/nostruct-align/1kao.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1kao/nostruct-align/1kao.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21801/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.919556
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2rhe
id: 2rhe   alignment found: /projects/compbio/experiments/models.97/pdb/2r/2rhe/nostruct-align/2rhe.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2r/2rhe/nostruct-align/2rhe.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2r/2rhe/nostruct-align/2rhe.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22191/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.983521
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dpe
id: 1dpe   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dpe/nostruct-align/1dpe.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dpe/nostruct-align/1dpe.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dpe/nostruct-align/1dpe.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6849/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.258545
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pty
id: 1pty   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pty/nostruct-align/1pty.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pty/nostruct-align/1pty.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pty/nostruct-align/1pty.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-773/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.000610
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1alo
id: 1alo   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1alo/nostruct-align/1alo.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1alo/nostruct-align/1alo.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1alo/nostruct-align/1alo.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30467/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.514526
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3crd
id: 3crd   alignment found: /projects/compbio/experiments/models.97/pdb/3c/3crd/nostruct-align/3crd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3crd/nostruct-align/3crd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3c/3crd/nostruct-align/3crd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30513/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.486572
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aty
id: 1aty   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aty/nostruct-align/1aty.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aty/nostruct-align/1aty.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aty/nostruct-align/1aty.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10408/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.076660
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2nmbA
id: 2nmbA   alignment found: /projects/compbio/experiments/models.97/pdb/2n/2nmbA/nostruct-align/2nmbA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2n/2nmbA/nostruct-align/2nmbA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2n/2nmbA/nostruct-align/2nmbA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29558/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.460571
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mkcA
id: 1mkcA   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mkcA/nostruct-align/1mkcA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mkcA/nostruct-align/1mkcA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mkcA/nostruct-align/1mkcA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18377/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.937500
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ark
id: 1ark   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ark/nostruct-align/1ark.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ark/nostruct-align/1ark.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ark/nostruct-align/1ark.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23529/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.841675
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2pac
id: 2pac   alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pac/nostruct-align/2pac.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pac/nostruct-align/2pac.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2p/2pac/nostruct-align/2pac.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16145/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.617554
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mknA
id: 1mknA   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mknA/nostruct-align/1mknA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mknA/nostruct-align/1mknA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mknA/nostruct-align/1mknA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8106/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.778564
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2hfh
id: 2hfh   alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hfh/nostruct-align/2hfh.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hfh/nostruct-align/2hfh.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2h/2hfh/nostruct-align/2hfh.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10155/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.948608
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bvh
id: 1bvh   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bvh/nostruct-align/1bvh.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvh/nostruct-align/1bvh.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bvh/nostruct-align/1bvh.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31528/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.358521
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ap0
id: 1ap0   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ap0/nostruct-align/1ap0.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ap0/nostruct-align/1ap0.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ap0/nostruct-align/1ap0.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6126/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.559570
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3bbg
id: 3bbg   alignment found: /projects/compbio/experiments/models.97/pdb/3b/3bbg/nostruct-align/3bbg.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3b/3bbg/nostruct-align/3bbg.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3b/3bbg/nostruct-align/3bbg.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32117/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.868530
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1apf
id: 1apf   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apf/nostruct-align/1apf.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apf/nostruct-align/1apf.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1apf/nostruct-align/1apf.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22983/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.488525
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2vik
id: 2vik   alignment found: /projects/compbio/experiments/models.97/pdb/2v/2vik/nostruct-align/2vik.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2v/2vik/nostruct-align/2vik.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2v/2vik/nostruct-align/2vik.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6078/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.139526
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1shcA
id: 1shcA   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1shcA/nostruct-align/1shcA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1shcA/nostruct-align/1shcA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1shcA/nostruct-align/1shcA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16536/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.217651
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1apj
id: 1apj   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apj/nostruct-align/1apj.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apj/nostruct-align/1apj.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1apj/nostruct-align/1apj.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15916/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.040527
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1roo
id: 1roo   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1roo/nostruct-align/1roo.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1roo/nostruct-align/1roo.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1roo/nostruct-align/1roo.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8351/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.977661
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ce3A
id: 1ce3A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ce3A/nostruct-align/1ce3A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ce3A/nostruct-align/1ce3A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1ce3A/nostruct-align/1ce3A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12646/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.561646
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ap8
id: 1ap8   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ap8/nostruct-align/1ap8.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ap8/nostruct-align/1ap8.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ap8/nostruct-align/1ap8.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30421/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.380615
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1svr
id: 1svr   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1svr/nostruct-align/1svr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1svr/nostruct-align/1svr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1svr/nostruct-align/1svr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5304/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.946655
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tiu
id: 1tiu   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tiu/nostruct-align/1tiu.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tiu/nostruct-align/1tiu.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tiu/nostruct-align/1tiu.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32457/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.976685
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1jwe
id: 1jwe   alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jwe/nostruct-align/1jwe.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jwe/nostruct-align/1jwe.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1j/1jwe/nostruct-align/1jwe.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8460/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.375610
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tiv
id: 1tiv   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tiv/nostruct-align/1tiv.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tiv/nostruct-align/1tiv.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tiv/nostruct-align/1tiv.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30642/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.606567
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cfh
id: 1cfh   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cfh/nostruct-align/1cfh.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cfh/nostruct-align/1cfh.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cfh/nostruct-align/1cfh.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21249/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.408569
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aoy
id: 1aoy   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoy/nostruct-align/1aoy.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoy/nostruct-align/1aoy.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aoy/nostruct-align/1aoy.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15570/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.427612
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nct
id: 1nct   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nct/nostruct-align/1nct.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nct/nostruct-align/1nct.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nct/nostruct-align/1nct.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13715/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.537598
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tfb
id: 1tfb   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tfb/nostruct-align/1tfb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tfb/nostruct-align/1tfb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tfb/nostruct-align/1tfb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19328/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.146606
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tbn
id: 1tbn   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tbn/nostruct-align/1tbn.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tbn/nostruct-align/1tbn.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tbn/nostruct-align/1tbn.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6938/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.456665
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1jvr
id: 1jvr   alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jvr/nostruct-align/1jvr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jvr/nostruct-align/1jvr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1j/1jvr/nostruct-align/1jvr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23546/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.422607
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tle
id: 1tle   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tle/nostruct-align/1tle.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tle/nostruct-align/1tle.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tle/nostruct-align/1tle.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7902/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.783569
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1krs
id: 1krs   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1krs/nostruct-align/1krs.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4860/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.927612
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ksr
id: 1ksr   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1ksr/nostruct-align/1ksr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1ksr/nostruct-align/1ksr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1ksr/nostruct-align/1ksr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20153/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.669678
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1be1
id: 1be1   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be1/nostruct-align/1be1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be1/nostruct-align/1be1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1be1/nostruct-align/1be1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13828/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.729614
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bct
id: 1bct   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bct/nostruct-align/1bct.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bct/nostruct-align/1bct.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bct/nostruct-align/1bct.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28965/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.945557
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pfsA
id: 1pfsA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pfsA/nostruct-align/1pfsA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pfsA/nostruct-align/1pfsA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pfsA/nostruct-align/1pfsA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5841/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.944580
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pyc
id: 1pyc   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pyc/nostruct-align/1pyc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pyc/nostruct-align/1pyc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pyc/nostruct-align/1pyc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18229/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.791626
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2hqi
id: 2hqi   alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hqi/nostruct-align/2hqi.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hqi/nostruct-align/2hqi.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2h/2hqi/nostruct-align/2hqi.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26279/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.001587
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pij
id: 1pij   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pij/nostruct-align/1pij.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pij/nostruct-align/1pij.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pij/nostruct-align/1pij.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10316/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.667603
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pou
id: 1pou   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pou/nostruct-align/1pou.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pou/nostruct-align/1pou.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pou/nostruct-align/1pou.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1948/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.286621
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bak
id: 1bak   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bak/nostruct-align/1bak.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bak/nostruct-align/1bak.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bak/nostruct-align/1bak.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28179/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.749634
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1baq
id: 1baq   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1baq/nostruct-align/1baq.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1baq/nostruct-align/1baq.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1baq/nostruct-align/1baq.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19754/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.175537
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bf8
id: 1bf8   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bf8/nostruct-align/1bf8.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bf8/nostruct-align/1bf8.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bf8/nostruct-align/1bf8.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16226/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.807617
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ngr
id: 1ngr   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1ngr/nostruct-align/1ngr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1ngr/nostruct-align/1ngr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1ngr/nostruct-align/1ngr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22413/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.484497
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pnbB
id: 1pnbB   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pnbB/nostruct-align/1pnbB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pnbB/nostruct-align/1pnbB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pnbB/nostruct-align/1pnbB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19440/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.558594
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pft
id: 1pft   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pft/nostruct-align/1pft.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pft/nostruct-align/1pft.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pft/nostruct-align/1pft.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28605/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.805542
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2lfb
id: 2lfb   alignment found: /projects/compbio/experiments/models.97/pdb/2l/2lfb/nostruct-align/2lfb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2lfb/nostruct-align/2lfb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2l/2lfb/nostruct-align/2lfb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12701/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.417603
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tam
id: 1tam   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tam/nostruct-align/1tam.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tam/nostruct-align/1tam.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tam/nostruct-align/1tam.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16225/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.551636
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2fsp
id: 2fsp   alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fsp/nostruct-align/2fsp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fsp/nostruct-align/2fsp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2f/2fsp/nostruct-align/2fsp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10471/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.752563
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qfqB
id: 1qfqB   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qfqB/nostruct-align/1qfqB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qfqB/nostruct-align/1qfqB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qfqB/nostruct-align/1qfqB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18401/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.129639
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2hgf
id: 2hgf   alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hgf/nostruct-align/2hgf.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hgf/nostruct-align/2hgf.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2h/2hgf/nostruct-align/2hgf.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21410/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.069702
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3mefA
id: 3mefA   alignment found: /projects/compbio/experiments/models.97/pdb/3m/3mefA/nostruct-align/3mefA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3m/3mefA/nostruct-align/3mefA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3m/3mefA/nostruct-align/3mefA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26093/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.088501
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bhb
id: 1bhb   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhb/nostruct-align/1bhb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhb/nostruct-align/1bhb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bhb/nostruct-align/1bhb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9805/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.948608
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2hp8
id: 2hp8   alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hp8/nostruct-align/2hp8.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hp8/nostruct-align/2hp8.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2h/2hp8/nostruct-align/2hp8.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27680/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.071655
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qyp
id: 1qyp   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qyp/nostruct-align/1qyp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qyp/nostruct-align/1qyp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qyp/nostruct-align/1qyp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20310/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.543579
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ap7
id: 1ap7   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ap7/nostruct-align/1ap7.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ap7/nostruct-align/1ap7.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ap7/nostruct-align/1ap7.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6344/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.850586
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bkq
id: 1bkq   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkq/nostruct-align/1bkq.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkq/nostruct-align/1bkq.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bkq/nostruct-align/1bkq.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3251/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.922607
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bc4
id: 1bc4   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bc4/nostruct-align/1bc4.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bc4/nostruct-align/1bc4.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bc4/nostruct-align/1bc4.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28942/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.860596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ret
id: 1ret   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1ret/nostruct-align/1ret.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1ret/nostruct-align/1ret.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1ret/nostruct-align/1ret.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28430/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.001709
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1auz
id: 1auz   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auz/nostruct-align/1auz.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auz/nostruct-align/1auz.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1auz/nostruct-align/1auz.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20458/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.512573
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2new
id: 2new   alignment found: /projects/compbio/experiments/models.97/pdb/2n/2new/nostruct-align/2new.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2n/2new/nostruct-align/2new.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2n/2new/nostruct-align/2new.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11594/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.468628
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qcrF
id: 1qcrF   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qcrF/nostruct-align/1qcrF.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qcrF/nostruct-align/1qcrF.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qcrF/nostruct-align/1qcrF.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10319/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.629639
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2lefA
id: 2lefA   alignment found: /projects/compbio/experiments/models.97/pdb/2l/2lefA/nostruct-align/2lefA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2lefA/nostruct-align/2lefA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2l/2lefA/nostruct-align/2lefA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19072/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.000488
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nkl
id: 1nkl   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nkl/nostruct-align/1nkl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nkl/nostruct-align/1nkl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nkl/nostruct-align/1nkl.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12842/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.590698
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b8qA
id: 1b8qA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8qA/nostruct-align/1b8qA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8qA/nostruct-align/1b8qA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b8qA/nostruct-align/1b8qA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5662/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.438599
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3gatA
id: 3gatA   alignment found: /projects/compbio/experiments/models.97/pdb/3g/3gatA/nostruct-align/3gatA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3g/3gatA/nostruct-align/3gatA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3g/3gatA/nostruct-align/3gatA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13424/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.953613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bj8
id: 1bj8   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bj8/nostruct-align/1bj8.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bj8/nostruct-align/1bj8.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bj8/nostruct-align/1bj8.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19409/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.529541
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qcrG
id: 1qcrG   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qcrG/nostruct-align/1qcrG.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qcrG/nostruct-align/1qcrG.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qcrG/nostruct-align/1qcrG.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11750/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.680542
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qcrK
id: 1qcrK   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qcrK/nostruct-align/1qcrK.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qcrK/nostruct-align/1qcrK.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qcrK/nostruct-align/1qcrK.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28978/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.868530
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1awj
id: 1awj   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1awj/nostruct-align/1awj.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1awj/nostruct-align/1awj.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1awj/nostruct-align/1awj.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31603/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.639648
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1awo
id: 1awo   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1awo/nostruct-align/1awo.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1awo/nostruct-align/1awo.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1awo/nostruct-align/1awo.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25943/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.971558
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qcrH
id: 1qcrH   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qcrH/nostruct-align/1qcrH.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qcrH/nostruct-align/1qcrH.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qcrH/nostruct-align/1qcrH.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18159/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.524536
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hce
id: 1hce   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hce/nostruct-align/1hce.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hce/nostruct-align/1hce.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hce/nostruct-align/1hce.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6071/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.519653
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qcrJ
id: 1qcrJ   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qcrJ/nostruct-align/1qcrJ.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qcrJ/nostruct-align/1qcrJ.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qcrJ/nostruct-align/1qcrJ.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7709/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.989624
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cfe
id: 1cfe   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cfe/nostruct-align/1cfe.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cfe/nostruct-align/1cfe.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cfe/nostruct-align/1cfe.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16086/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.591553
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2abd
id: 2abd   alignment found: /projects/compbio/experiments/models.97/pdb/2a/2abd/nostruct-align/2abd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2abd/nostruct-align/2abd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2a/2abd/nostruct-align/2abd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17666/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.453613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2nef
id: 2nef   alignment found: /projects/compbio/experiments/models.97/pdb/2n/2nef/nostruct-align/2nef.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2n/2nef/nostruct-align/2nef.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2n/2nef/nostruct-align/2nef.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27822/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.945557
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1eal
id: 1eal   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eal/nostruct-align/1eal.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eal/nostruct-align/1eal.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1eal/nostruct-align/1eal.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23015/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.406616
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2adx
id: 2adx   alignment found: /projects/compbio/experiments/models.97/pdb/2a/2adx/nostruct-align/2adx.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2adx/nostruct-align/2adx.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2a/2adx/nostruct-align/2adx.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17494/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.457520
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a5j
id: 1a5j   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a5j/nostruct-align/1a5j.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a5j/nostruct-align/1a5j.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a5j/nostruct-align/1a5j.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13982/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.435547
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2rgf
id: 2rgf   alignment found: /projects/compbio/experiments/models.97/pdb/2r/2rgf/nostruct-align/2rgf.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2r/2rgf/nostruct-align/2rgf.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2r/2rgf/nostruct-align/2rgf.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9051/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.331543
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1zwa
id: 1zwa   alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zwa/nostruct-align/1zwa.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zwa/nostruct-align/1zwa.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1z/1zwa/nostruct-align/1zwa.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11981/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.931641
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bbo
id: 1bbo   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bbo/nostruct-align/1bbo.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bbo/nostruct-align/1bbo.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bbo/nostruct-align/1bbo.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20885/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.538574
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hdp
id: 1hdp   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hdp/nostruct-align/1hdp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hdp/nostruct-align/1hdp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hdp/nostruct-align/1hdp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21713/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.841553
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1zaq
id: 1zaq   alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zaq/nostruct-align/1zaq.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zaq/nostruct-align/1zaq.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1z/1zaq/nostruct-align/1zaq.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8780/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.158569
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gya
id: 1gya   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gya/nostruct-align/1gya.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gya/nostruct-align/1gya.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gya/nostruct-align/1gya.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8589/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.302612
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dfd
id: 1dfd   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dfd/nostruct-align/1dfd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dfd/nostruct-align/1dfd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dfd/nostruct-align/1dfd.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-29352/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.922607
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1zug
id: 1zug   alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zug/nostruct-align/1zug.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zug/nostruct-align/1zug.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1z/1zug/nostruct-align/1zug.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3825/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.135498
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hmcB
id: 1hmcB   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hmcB/nostruct-align/1hmcB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hmcB/nostruct-align/1hmcB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hmcB/nostruct-align/1hmcB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15638/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.040649
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hev
id: 1hev   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hev/nostruct-align/1hev.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hev/nostruct-align/1hev.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hev/nostruct-align/1hev.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21376/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.721558
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hsm
id: 1hsm   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hsm/nostruct-align/1hsm.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hsm/nostruct-align/1hsm.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hsm/nostruct-align/1hsm.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18768/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.900635
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ezi
id: 2ezi   alignment found: /projects/compbio/experiments/models.97/pdb/2e/2ezi/nostruct-align/2ezi.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2ezi/nostruct-align/2ezi.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2e/2ezi/nostruct-align/2ezi.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21967/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.700562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4ull
id: 4ull   alignment found: /projects/compbio/experiments/models.97/pdb/4u/4ull/nostruct-align/4ull.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/4u/4ull/nostruct-align/4ull.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/4u/4ull/nostruct-align/4ull.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20107/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.113647
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qcrA
id: 1qcrA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qcrA/nostruct-align/1qcrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qcrA/nostruct-align/1qcrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qcrA/nostruct-align/1qcrA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28296/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.424683
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hqi
id: 1hqi   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hqi/nostruct-align/1hqi.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hqi/nostruct-align/1hqi.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hqi/nostruct-align/1hqi.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10878/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.924561
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ech
id: 2ech   alignment found: /projects/compbio/experiments/models.97/pdb/2e/2ech/nostruct-align/2ech.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2ech/nostruct-align/2ech.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2e/2ech/nostruct-align/2ech.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17968/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.574585
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1def
id: 1def   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1def/nostruct-align/1def.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1def/nostruct-align/1def.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1def/nostruct-align/1def.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6606/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.493652
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gcf
id: 1gcf   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gcf/nostruct-align/1gcf.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gcf/nostruct-align/1gcf.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gcf/nostruct-align/1gcf.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24967/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.244629
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hrzA
id: 1hrzA   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hrzA/nostruct-align/1hrzA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hrzA/nostruct-align/1hrzA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hrzA/nostruct-align/1hrzA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18804/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.815552
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fyc
id: 1fyc   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fyc/nostruct-align/1fyc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fyc/nostruct-align/1fyc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fyc/nostruct-align/1fyc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26586/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.188599
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1faq
id: 1faq   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1faq/nostruct-align/1faq.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1faq/nostruct-align/1faq.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1faq/nostruct-align/1faq.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18423/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.274658
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1skyE
id: 1skyE   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1skyE/nostruct-align/1skyE.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1skyE/nostruct-align/1skyE.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1skyE/nostruct-align/1skyE.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28979/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.687622
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2brz
id: 2brz   alignment found: /projects/compbio/experiments/models.97/pdb/2b/2brz/nostruct-align/2brz.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2brz/nostruct-align/2brz.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2b/2brz/nostruct-align/2brz.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22125/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.256592
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fdm
id: 1fdm   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fdm/nostruct-align/1fdm.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fdm/nostruct-align/1fdm.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fdm/nostruct-align/1fdm.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-476/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.897583
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fht
id: 1fht   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fht/nostruct-align/1fht.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fht/nostruct-align/1fht.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fht/nostruct-align/1fht.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19223/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.156616
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2cdx
id: 2cdx   alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cdx/nostruct-align/2cdx.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cdx/nostruct-align/2cdx.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2c/2cdx/nostruct-align/2cdx.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28693/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.622559
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2bds
id: 2bds   alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bds/nostruct-align/2bds.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bds/nostruct-align/2bds.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2b/2bds/nostruct-align/2bds.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17384/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.988647
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2tbd
id: 2tbd   alignment found: /projects/compbio/experiments/models.97/pdb/2t/2tbd/nostruct-align/2tbd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2tbd/nostruct-align/2tbd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2t/2tbd/nostruct-align/2tbd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21333/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.037598
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1zac
id: 1zac   alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zac/nostruct-align/1zac.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zac/nostruct-align/1zac.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1z/1zac/nostruct-align/1zac.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3725/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.616577
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a1d
id: 1a1d   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a1d/nostruct-align/1a1d.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a1d/nostruct-align/1a1d.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a1d/nostruct-align/1a1d.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9253/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.143555
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fbr
id: 1fbr   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fbr/nostruct-align/1fbr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fbr/nostruct-align/1fbr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fbr/nostruct-align/1fbr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8181/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.330566
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2bb8
id: 2bb8   alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bb8/nostruct-align/2bb8.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bb8/nostruct-align/2bb8.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2b/2bb8/nostruct-align/2bb8.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4273/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.020630
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1egr
id: 1egr   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1egr/nostruct-align/1egr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1egr/nostruct-align/1egr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1egr/nostruct-align/1egr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3022/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.802490
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2bby
id: 2bby   alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bby/nostruct-align/2bby.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bby/nostruct-align/2bby.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2b/2bby/nostruct-align/2bby.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8412/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.636597
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ezl
id: 2ezl   alignment found: /projects/compbio/experiments/models.97/pdb/2e/2ezl/nostruct-align/2ezl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2ezl/nostruct-align/2ezl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2e/2ezl/nostruct-align/2ezl.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11825/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.513672
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2bjxA
id: 2bjxA   alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bjxA/nostruct-align/2bjxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bjxA/nostruct-align/2bjxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2b/2bjxA/nostruct-align/2bjxA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18999/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.481689
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2bi6H
id: 2bi6H   alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bi6H/nostruct-align/2bi6H.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bi6H/nostruct-align/2bi6H.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2b/2bi6H/nostruct-align/2bi6H.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5953/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.703613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1itm
id: 1itm   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1itm/nostruct-align/1itm.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1itm/nostruct-align/1itm.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1itm/nostruct-align/1itm.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1483/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.300659
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1irl
id: 1irl   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1irl/nostruct-align/1irl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1irl/nostruct-align/1irl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1irl/nostruct-align/1irl.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26329/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.741577
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ah9
id: 1ah9   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ah9/nostruct-align/1ah9.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ah9/nostruct-align/1ah9.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ah9/nostruct-align/1ah9.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21198/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.861572
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2fn2
id: 2fn2   alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fn2/nostruct-align/2fn2.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fn2/nostruct-align/2fn2.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2f/2fn2/nostruct-align/2fn2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14817/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.274536
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ce4A
id: 1ce4A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ce4A/nostruct-align/1ce4A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ce4A/nostruct-align/1ce4A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1ce4A/nostruct-align/1ce4A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20294/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.091553
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a1w
id: 1a1w   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a1w/nostruct-align/1a1w.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a1w/nostruct-align/1a1w.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a1w/nostruct-align/1a1w.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26789/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.879639
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gks
id: 1gks   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gks/nostruct-align/1gks.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gks/nostruct-align/1gks.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gks/nostruct-align/1gks.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31602/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.264648
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1irsA
id: 1irsA   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1irsA/nostruct-align/1irsA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1irsA/nostruct-align/1irsA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1irsA/nostruct-align/1irsA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4280/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.186646
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2sxl
id: 2sxl   alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sxl/nostruct-align/2sxl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sxl/nostruct-align/2sxl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2s/2sxl/nostruct-align/2sxl.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23225/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.906616
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1itf
id: 1itf   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1itf/nostruct-align/1itf.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1itf/nostruct-align/1itf.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1itf/nostruct-align/1itf.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16900/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.748657
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1uxd
id: 1uxd   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uxd/nostruct-align/1uxd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uxd/nostruct-align/1uxd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1uxd/nostruct-align/1uxd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30147/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.771606
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1uwoA
id: 1uwoA   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uwoA/nostruct-align/1uwoA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uwoA/nostruct-align/1uwoA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1uwoA/nostruct-align/1uwoA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26822/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.775635
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ah1
id: 1ah1   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ah1/nostruct-align/1ah1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ah1/nostruct-align/1ah1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ah1/nostruct-align/1ah1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30246/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.199585
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1jli
id: 1jli   alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jli/nostruct-align/1jli.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jli/nostruct-align/1jli.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1j/1jli/nostruct-align/1jli.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28142/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.859619
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1imt
id: 1imt   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1imt/nostruct-align/1imt.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1imt/nostruct-align/1imt.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1imt/nostruct-align/1imt.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11017/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.050659
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2fow
id: 2fow   alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fow/nostruct-align/2fow.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fow/nostruct-align/2fow.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2f/2fow/nostruct-align/2fow.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25698/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.478638
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tum
id: 1tum   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tum/nostruct-align/1tum.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tum/nostruct-align/1tum.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tum/nostruct-align/1tum.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26503/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.368530
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1acz
id: 1acz   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1acz/nostruct-align/1acz.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1acz/nostruct-align/1acz.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1acz/nostruct-align/1acz.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25009/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.598633
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tsg
id: 1tsg   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tsg/nostruct-align/1tsg.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tsg/nostruct-align/1tsg.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tsg/nostruct-align/1tsg.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9012/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.431641
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ulp
id: 1ulp   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1ulp/nostruct-align/1ulp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1ulp/nostruct-align/1ulp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1ulp/nostruct-align/1ulp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2321/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.909668
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ezxA
id: 2ezxA   alignment found: /projects/compbio/experiments/models.97/pdb/2e/2ezxA/nostruct-align/2ezxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2ezxA/nostruct-align/2ezxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2e/2ezxA/nostruct-align/2ezxA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6045/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.488525
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ahm
id: 1ahm   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ahm/nostruct-align/1ahm.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ahm/nostruct-align/1ahm.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ahm/nostruct-align/1ahm.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16906/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.202515
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1txm
id: 1txm   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1txm/nostruct-align/1txm.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1txm/nostruct-align/1txm.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1txm/nostruct-align/1txm.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-44/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.907593
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tpm
id: 1tpm   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tpm/nostruct-align/1tpm.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tpm/nostruct-align/1tpm.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tpm/nostruct-align/1tpm.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20214/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.476685
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2vgh
id: 2vgh   alignment found: /projects/compbio/experiments/models.97/pdb/2v/2vgh/nostruct-align/2vgh.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2v/2vgh/nostruct-align/2vgh.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2v/2vgh/nostruct-align/2vgh.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17242/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.557617
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ajyA
id: 1ajyA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ajyA/nostruct-align/1ajyA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ajyA/nostruct-align/1ajyA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ajyA/nostruct-align/1ajyA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13446/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.992676
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1abv
id: 1abv   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1abv/nostruct-align/1abv.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1abv/nostruct-align/1abv.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1abv/nostruct-align/1abv.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20422/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.643555
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ab3
id: 1ab3   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ab3/nostruct-align/1ab3.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ab3/nostruct-align/1ab3.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ab3/nostruct-align/1ab3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4560/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.033569
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ag4
id: 1ag4   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ag4/nostruct-align/1ag4.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ag4/nostruct-align/1ag4.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ag4/nostruct-align/1ag4.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30164/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.190674
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aj3
id: 1aj3   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aj3/nostruct-align/1aj3.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aj3/nostruct-align/1aj3.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aj3/nostruct-align/1aj3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-581/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.988525
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1agg
id: 1agg   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agg/nostruct-align/1agg.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agg/nostruct-align/1agg.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1agg/nostruct-align/1agg.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/experiments/models.97/pdb/1a/1agg/nostruct-align/1agg.t99.a2m.gz
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.295532
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1wkt
id: 1wkt   alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wkt/nostruct-align/1wkt.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wkt/nostruct-align/1wkt.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1w/1wkt/nostruct-align/1wkt.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13741/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.429688
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2pleA
id: 2pleA   alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pleA/nostruct-align/2pleA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pleA/nostruct-align/2pleA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2p/2pleA/nostruct-align/2pleA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21569/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.033569
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ddf
id: 1ddf   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1ddf/nostruct-align/1ddf.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1ddf/nostruct-align/1ddf.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1ddf/nostruct-align/1ddf.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9773/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.791626
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4tgf
id: 4tgf   alignment found: /projects/compbio/experiments/models.97/pdb/4t/4tgf/nostruct-align/4tgf.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/4t/4tgf/nostruct-align/4tgf.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/4t/4tgf/nostruct-align/4tgf.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11657/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.362671
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1wjbA
id: 1wjbA   alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wjbA/nostruct-align/1wjbA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wjbA/nostruct-align/1wjbA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1w/1wjbA/nostruct-align/1wjbA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11408/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.930664
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mak
id: 1mak   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mak/nostruct-align/1mak.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mak/nostruct-align/1mak.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mak/nostruct-align/1mak.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28910/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.281616
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1iieA
id: 1iieA   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iieA/nostruct-align/1iieA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iieA/nostruct-align/1iieA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1iieA/nostruct-align/1iieA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29529/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.350586
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cur
id: 1cur   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cur/nostruct-align/1cur.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cur/nostruct-align/1cur.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cur/nostruct-align/1cur.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32558/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.073608
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vtx
id: 1vtx   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vtx/nostruct-align/1vtx.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vtx/nostruct-align/1vtx.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vtx/nostruct-align/1vtx.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28108/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.304688
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mypA
id: 1mypA   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mypA/nostruct-align/1mypA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mypA/nostruct-align/1mypA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mypA/nostruct-align/1mypA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29948/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.788574
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vih
id: 1vih   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vih/nostruct-align/1vih.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vih/nostruct-align/1vih.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vih/nostruct-align/1vih.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3872/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.340576
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1if1A
id: 1if1A   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1if1A/nostruct-align/1if1A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1if1A/nostruct-align/1if1A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1if1A/nostruct-align/1if1A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-293/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.126587
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ystH
id: 1ystH   alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ystH/nostruct-align/1ystH.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ystH/nostruct-align/1ystH.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1y/1ystH/nostruct-align/1ystH.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9937/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.523560
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gumA
id: 1gumA   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gumA/nostruct-align/1gumA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gumA/nostruct-align/1gumA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gumA/nostruct-align/1gumA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-31324/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.682617
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bp7A
id: 1bp7A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bp7A/nostruct-align/1bp7A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bp7A/nostruct-align/1bp7A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bp7A/nostruct-align/1bp7A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30375/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.945557
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ctl
id: 1ctl   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ctl/nostruct-align/1ctl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ctl/nostruct-align/1ctl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1ctl/nostruct-align/1ctl.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14412/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.231567
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gnhA
id: 1gnhA   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gnhA/nostruct-align/1gnhA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gnhA/nostruct-align/1gnhA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gnhA/nostruct-align/1gnhA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6044/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.740601
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1be3D
id: 1be3D   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3D/nostruct-align/1be3D.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3D/nostruct-align/1be3D.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1be3D/nostruct-align/1be3D.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32275/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.807617
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bvsB
id: 1bvsB   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bvsB/nostruct-align/1bvsB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvsB/nostruct-align/1bvsB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bvsB/nostruct-align/1bvsB.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-28136/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.655640
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gylA
id: 1gylA   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gylA/nostruct-align/1gylA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gylA/nostruct-align/1gylA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gylA/nostruct-align/1gylA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18024/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.969604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rhi3
id: 1rhi3   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rhi3/nostruct-align/1rhi3.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rhi3/nostruct-align/1rhi3.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rhi3/nostruct-align/1rhi3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26509/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.518555
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b6u
id: 1b6u   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b6u/nostruct-align/1b6u.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b6u/nostruct-align/1b6u.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b6u/nostruct-align/1b6u.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23536/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.709595
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pdgC
id: 1pdgC   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pdgC/nostruct-align/1pdgC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pdgC/nostruct-align/1pdgC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pdgC/nostruct-align/1pdgC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32701/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.295654
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b9xB
id: 1b9xB   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9xB/nostruct-align/1b9xB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9xB/nostruct-align/1b9xB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b9xB/nostruct-align/1b9xB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16797/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.733643
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fpkA
id: 1fpkA   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fpkA/nostruct-align/1fpkA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fpkA/nostruct-align/1fpkA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fpkA/nostruct-align/1fpkA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20321/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.667480
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1e2o
id: 1e2o   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1e2o/nostruct-align/1e2o.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1e2o/nostruct-align/1e2o.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1e2o/nostruct-align/1e2o.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14567/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.080688
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2mev4
id: 2mev4   alignment found: /projects/compbio/experiments/models.97/pdb/2m/2mev4/nostruct-align/2mev4.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2mev4/nostruct-align/2mev4.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2m/2mev4/nostruct-align/2mev4.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22497/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.742554
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nbmG
id: 1nbmG   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nbmG/nostruct-align/1nbmG.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nbmG/nostruct-align/1nbmG.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nbmG/nostruct-align/1nbmG.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25506/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.162598
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1plr
id: 1plr   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1plr/nostruct-align/1plr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1plr/nostruct-align/1plr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1plr/nostruct-align/1plr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4609/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.936646
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ercA
id: 2ercA   alignment found: /projects/compbio/experiments/models.97/pdb/2e/2ercA/nostruct-align/2ercA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2ercA/nostruct-align/2ercA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2e/2ercA/nostruct-align/2ercA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13901/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.195557
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3vtk
id: 3vtk   alignment found: /projects/compbio/experiments/models.97/pdb/3v/3vtk/nostruct-align/3vtk.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3v/3vtk/nostruct-align/3vtk.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3v/3vtk/nostruct-align/3vtk.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31776/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.672607
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a0oD
id: 1a0oD   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a0oD/nostruct-align/1a0oD.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a0oD/nostruct-align/1a0oD.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a0oD/nostruct-align/1a0oD.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16806/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.094604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nom
id: 1nom   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nom/nostruct-align/1nom.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nom/nostruct-align/1nom.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nom/nostruct-align/1nom.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27785/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.411499
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2rveA
id: 2rveA   alignment found: /projects/compbio/experiments/models.97/pdb/2r/2rveA/nostruct-align/2rveA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2r/2rveA/nostruct-align/2rveA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2r/2rveA/nostruct-align/2rveA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-631/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.452637
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1kigL
id: 1kigL   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kigL/nostruct-align/1kigL.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kigL/nostruct-align/1kigL.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1kigL/nostruct-align/1kigL.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22674/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.503540
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1agnA
id: 1agnA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agnA/nostruct-align/1agnA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agnA/nostruct-align/1agnA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1agnA/nostruct-align/1agnA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28555/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.324585
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1uaaA
id: 1uaaA   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uaaA/nostruct-align/1uaaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uaaA/nostruct-align/1uaaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1uaaA/nostruct-align/1uaaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13020/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.961670
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tsm
id: 1tsm   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tsm/nostruct-align/1tsm.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tsm/nostruct-align/1tsm.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tsm/nostruct-align/1tsm.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5465/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.920532
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ucz
id: 2ucz   alignment found: /projects/compbio/experiments/models.97/pdb/2u/2ucz/nostruct-align/2ucz.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2u/2ucz/nostruct-align/2ucz.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2u/2ucz/nostruct-align/2ucz.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29617/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.292603
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cne
id: 1cne   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cne/nostruct-align/1cne.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cne/nostruct-align/1cne.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cne/nostruct-align/1cne.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31429/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.285522
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tahA
id: 1tahA   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tahA/nostruct-align/1tahA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tahA/nostruct-align/1tahA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tahA/nostruct-align/1tahA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32433/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.968506
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vbd4
id: 1vbd4   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vbd4/nostruct-align/1vbd4.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vbd4/nostruct-align/1vbd4.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vbd4/nostruct-align/1vbd4.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1638/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.938599
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bp3A
id: 1bp3A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bp3A/nostruct-align/1bp3A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bp3A/nostruct-align/1bp3A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bp3A/nostruct-align/1bp3A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-29927/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.414551
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1an2A
id: 1an2A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1an2A/nostruct-align/1an2A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1an2A/nostruct-align/1an2A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1an2A/nostruct-align/1an2A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13547/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.716553
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vkxA
id: 1vkxA   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vkxA/nostruct-align/1vkxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vkxA/nostruct-align/1vkxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vkxA/nostruct-align/1vkxA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15108/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.095581
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tfpA
id: 1tfpA   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tfpA/nostruct-align/1tfpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tfpA/nostruct-align/1tfpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tfpA/nostruct-align/1tfpA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13310/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.685547
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bev1
id: 1bev1   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bev1/nostruct-align/1bev1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bev1/nostruct-align/1bev1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bev1/nostruct-align/1bev1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26846/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.728638
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dktB
id: 1dktB   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dktB/nostruct-align/1dktB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dktB/nostruct-align/1dktB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dktB/nostruct-align/1dktB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2897/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.119629
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b7eA
id: 1b7eA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b7eA/nostruct-align/1b7eA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b7eA/nostruct-align/1b7eA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b7eA/nostruct-align/1b7eA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6933/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.381714
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fzaB
id: 1fzaB   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fzaB/nostruct-align/1fzaB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fzaB/nostruct-align/1fzaB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fzaB/nostruct-align/1fzaB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12712/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.208618
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pysA
id: 1pysA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pysA/nostruct-align/1pysA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pysA/nostruct-align/1pysA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pysA/nostruct-align/1pysA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14894/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.528687
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1agx
id: 1agx   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agx/nostruct-align/1agx.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agx/nostruct-align/1agx.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1agx/nostruct-align/1agx.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25649/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.749634
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bgj
id: 1bgj   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bgj/nostruct-align/1bgj.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bgj/nostruct-align/1bgj.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bgj/nostruct-align/1bgj.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8630/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.042603
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1an7A
id: 1an7A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1an7A/nostruct-align/1an7A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1an7A/nostruct-align/1an7A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1an7A/nostruct-align/1an7A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25277/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.199585
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1otcB
id: 1otcB   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1otcB/nostruct-align/1otcB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1otcB/nostruct-align/1otcB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1otcB/nostruct-align/1otcB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20072/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.567627
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ch6A
id: 1ch6A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ch6A/nostruct-align/1ch6A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ch6A/nostruct-align/1ch6A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1ch6A/nostruct-align/1ch6A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30360/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.524536
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4rnpA
id: 4rnpA   alignment found: /projects/compbio/experiments/models.97/pdb/4r/4rnpA/nostruct-align/4rnpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/4r/4rnpA/nostruct-align/4rnpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/4r/4rnpA/nostruct-align/4rnpA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1867/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.631592
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4dpvZ
id: 4dpvZ   alignment found: /projects/compbio/experiments/models.97/pdb/4d/4dpvZ/nostruct-align/4dpvZ.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/4d/4dpvZ/nostruct-align/4dpvZ.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/4d/4dpvZ/nostruct-align/4dpvZ.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3664/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -16.637695
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qcrC
id: 1qcrC   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qcrC/nostruct-align/1qcrC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qcrC/nostruct-align/1qcrC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qcrC/nostruct-align/1qcrC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8999/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.117554
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1avoB
id: 1avoB   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avoB/nostruct-align/1avoB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avoB/nostruct-align/1avoB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1avoB/nostruct-align/1avoB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12142/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.786621
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fdi
id: 1fdi   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fdi/nostruct-align/1fdi.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fdi/nostruct-align/1fdi.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fdi/nostruct-align/1fdi.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6221/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.819580
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1jrhI
id: 1jrhI   alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jrhI/nostruct-align/1jrhI.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jrhI/nostruct-align/1jrhI.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1j/1jrhI/nostruct-align/1jrhI.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17928/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.813599
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1thjA
id: 1thjA   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1thjA/nostruct-align/1thjA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1thjA/nostruct-align/1thjA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1thjA/nostruct-align/1thjA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2101/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.958618
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a0aA
id: 1a0aA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a0aA/nostruct-align/1a0aA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a0aA/nostruct-align/1a0aA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a0aA/nostruct-align/1a0aA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20674/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.588623
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fgjA
id: 1fgjA   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fgjA/nostruct-align/1fgjA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fgjA/nostruct-align/1fgjA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fgjA/nostruct-align/1fgjA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9821/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.364624
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1frvB
id: 1frvB   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1frvB/nostruct-align/1frvB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1frvB/nostruct-align/1frvB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1frvB/nostruct-align/1frvB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19734/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.505615
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aipE
id: 1aipE   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aipE/nostruct-align/1aipE.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aipE/nostruct-align/1aipE.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aipE/nostruct-align/1aipE.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26096/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.836548
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aoiF
id: 1aoiF   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoiF/nostruct-align/1aoiF.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoiF/nostruct-align/1aoiF.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aoiF/nostruct-align/1aoiF.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5590/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.020630
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qatB
id: 1qatB   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qatB/nostruct-align/1qatB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qatB/nostruct-align/1qatB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qatB/nostruct-align/1qatB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15515/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.243530
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aoiG
id: 1aoiG   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoiG/nostruct-align/1aoiG.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoiG/nostruct-align/1aoiG.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aoiG/nostruct-align/1aoiG.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18841/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.163574
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dkgB
id: 1dkgB   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dkgB/nostruct-align/1dkgB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dkgB/nostruct-align/1dkgB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dkgB/nostruct-align/1dkgB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24867/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.921509
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1asyA
id: 1asyA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1asyA/nostruct-align/1asyA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1asyA/nostruct-align/1asyA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1asyA/nostruct-align/1asyA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32595/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.718628
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2bbvC
id: 2bbvC   alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bbvC/nostruct-align/2bbvC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bbvC/nostruct-align/2bbvC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2b/2bbvC/nostruct-align/2bbvC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12390/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.158569
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1asx
id: 1asx   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1asx/nostruct-align/1asx.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1asx/nostruct-align/1asx.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1asx/nostruct-align/1asx.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1416/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.911621
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1kmnD
id: 1kmnD   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kmnD/nostruct-align/1kmnD.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kmnD/nostruct-align/1kmnD.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1kmnD/nostruct-align/1kmnD.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20086/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.904541
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bk6A
id: 1bk6A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bk6A/nostruct-align/1bk6A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bk6A/nostruct-align/1bk6A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bk6A/nostruct-align/1bk6A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9504/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.264648
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cmaA
id: 1cmaA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cmaA/nostruct-align/1cmaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cmaA/nostruct-align/1cmaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cmaA/nostruct-align/1cmaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4512/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.558594
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2lgsA
id: 2lgsA   alignment found: /projects/compbio/experiments/models.97/pdb/2l/2lgsA/nostruct-align/2lgsA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2lgsA/nostruct-align/2lgsA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2l/2lgsA/nostruct-align/2lgsA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30657/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.308594
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pkp
id: 1pkp   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pkp/nostruct-align/1pkp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pkp/nostruct-align/1pkp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pkp/nostruct-align/1pkp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16241/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.769531
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a7aA
id: 1a7aA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a7aA/nostruct-align/1a7aA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a7aA/nostruct-align/1a7aA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a7aA/nostruct-align/1a7aA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10509/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.310669
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1agrH
id: 1agrH   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agrH/nostruct-align/1agrH.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agrH/nostruct-align/1agrH.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1agrH/nostruct-align/1agrH.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17041/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.686646
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dkgD
id: 1dkgD   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dkgD/nostruct-align/1dkgD.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dkgD/nostruct-align/1dkgD.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dkgD/nostruct-align/1dkgD.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8383/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.962524
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rgs
id: 1rgs   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rgs/nostruct-align/1rgs.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rgs/nostruct-align/1rgs.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rgs/nostruct-align/1rgs.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-254/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.026611
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ab4
id: 1ab4   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ab4/nostruct-align/1ab4.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ab4/nostruct-align/1ab4.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ab4/nostruct-align/1ab4.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5938/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.778687
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fokA
id: 1fokA   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fokA/nostruct-align/1fokA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fokA/nostruct-align/1fokA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fokA/nostruct-align/1fokA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25983/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.131592
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1occG
id: 1occG   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1occG/nostruct-align/1occG.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1occG/nostruct-align/1occG.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1occG/nostruct-align/1occG.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2552/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.560547
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1xxcA
id: 1xxcA   alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xxcA/nostruct-align/1xxcA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xxcA/nostruct-align/1xxcA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1x/1xxcA/nostruct-align/1xxcA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5156/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.153564
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cdi
id: 1cdi   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdi/nostruct-align/1cdi.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdi/nostruct-align/1cdi.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cdi/nostruct-align/1cdi.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26281/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.353516
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1scmA
id: 1scmA   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1scmA/nostruct-align/1scmA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1scmA/nostruct-align/1scmA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1scmA/nostruct-align/1scmA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28775/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.862549
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1preB
id: 1preB   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1preB/nostruct-align/1preB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1preB/nostruct-align/1preB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1preB/nostruct-align/1preB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25371/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.779663
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ebpA
id: 1ebpA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ebpA/nostruct-align/1ebpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ebpA/nostruct-align/1ebpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1ebpA/nostruct-align/1ebpA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12763/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.240601
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3monB
id: 3monB   alignment found: /projects/compbio/experiments/models.97/pdb/3m/3monB/nostruct-align/3monB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3m/3monB/nostruct-align/3monB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3m/3monB/nostruct-align/3monB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19462/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.092651
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qapA
id: 1qapA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qapA/nostruct-align/1qapA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qapA/nostruct-align/1qapA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qapA/nostruct-align/1qapA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9943/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.540649
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bjoA
id: 1bjoA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bjoA/nostruct-align/1bjoA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bjoA/nostruct-align/1bjoA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bjoA/nostruct-align/1bjoA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1919/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.180542
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pxtB
id: 1pxtB   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pxtB/nostruct-align/1pxtB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pxtB/nostruct-align/1pxtB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pxtB/nostruct-align/1pxtB.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-15720/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.114624
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 7at1B
id: 7at1B   alignment found: /projects/compbio/experiments/models.97/pdb/7a/7at1B/nostruct-align/7at1B.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/7a/7at1B/nostruct-align/7at1B.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/7a/7at1B/nostruct-align/7at1B.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20845/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.883545
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1npoC
id: 1npoC   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1npoC/nostruct-align/1npoC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1npoC/nostruct-align/1npoC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1npoC/nostruct-align/1npoC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27047/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.330566
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dlhB
id: 1dlhB   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dlhB/nostruct-align/1dlhB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dlhB/nostruct-align/1dlhB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dlhB/nostruct-align/1dlhB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32313/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.254639
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1liaA
id: 1liaA   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1liaA/nostruct-align/1liaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1liaA/nostruct-align/1liaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1liaA/nostruct-align/1liaA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-28868/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.630615
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mxa
id: 1mxa   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mxa/nostruct-align/1mxa.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mxa/nostruct-align/1mxa.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mxa/nostruct-align/1mxa.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5628/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.247559
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3aig
id: 3aig   alignment found: /projects/compbio/experiments/models.97/pdb/3a/3aig/nostruct-align/3aig.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3a/3aig/nostruct-align/3aig.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3a/3aig/nostruct-align/3aig.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-8238/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.666626
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2drpA
id: 2drpA   alignment found: /projects/compbio/experiments/models.97/pdb/2d/2drpA/nostruct-align/2drpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2drpA/nostruct-align/2drpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2d/2drpA/nostruct-align/2drpA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28066/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.768555
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ybvA
id: 1ybvA   alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ybvA/nostruct-align/1ybvA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ybvA/nostruct-align/1ybvA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1y/1ybvA/nostruct-align/1ybvA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18986/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.392700
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1btmA
id: 1btmA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1btmA/nostruct-align/1btmA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1btmA/nostruct-align/1btmA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1btmA/nostruct-align/1btmA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11806/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.275513
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bib
id: 1bib   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bib/nostruct-align/1bib.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bib/nostruct-align/1bib.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bib/nostruct-align/1bib.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24449/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.638550
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rusA
id: 1rusA   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rusA/nostruct-align/1rusA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rusA/nostruct-align/1rusA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rusA/nostruct-align/1rusA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29354/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.166626
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ysc
id: 1ysc   alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ysc/nostruct-align/1ysc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ysc/nostruct-align/1ysc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1y/1ysc/nostruct-align/1ysc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28504/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.893677
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pioA
id: 1pioA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pioA/nostruct-align/1pioA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pioA/nostruct-align/1pioA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pioA/nostruct-align/1pioA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5922/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.901611
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ibcB
id: 1ibcB   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ibcB/nostruct-align/1ibcB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ibcB/nostruct-align/1ibcB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1ibcB/nostruct-align/1ibcB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31654/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.537598
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ibcA
id: 1ibcA   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ibcA/nostruct-align/1ibcA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ibcA/nostruct-align/1ibcA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1ibcA/nostruct-align/1ibcA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19850/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.140625
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bqhG
id: 1bqhG   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqhG/nostruct-align/1bqhG.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqhG/nostruct-align/1bqhG.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bqhG/nostruct-align/1bqhG.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-28642/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.714600
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1csgA
id: 1csgA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1csgA/nostruct-align/1csgA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1csgA/nostruct-align/1csgA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1csgA/nostruct-align/1csgA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16182/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.701660
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vcbC
id: 1vcbC   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vcbC/nostruct-align/1vcbC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vcbC/nostruct-align/1vcbC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vcbC/nostruct-align/1vcbC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11819/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.467651
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vcbA
id: 1vcbA   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vcbA/nostruct-align/1vcbA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vcbA/nostruct-align/1vcbA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vcbA/nostruct-align/1vcbA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6359/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.852539
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vcbB
id: 1vcbB   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vcbB/nostruct-align/1vcbB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vcbB/nostruct-align/1vcbB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vcbB/nostruct-align/1vcbB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11630/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.055664
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mtnC
id: 1mtnC   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mtnC/nostruct-align/1mtnC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mtnC/nostruct-align/1mtnC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mtnC/nostruct-align/1mtnC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19088/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.781616
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bnkA
id: 1bnkA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bnkA/nostruct-align/1bnkA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bnkA/nostruct-align/1bnkA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bnkA/nostruct-align/1bnkA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30853/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.706543
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nfdA
id: 1nfdA   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nfdA/nostruct-align/1nfdA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nfdA/nostruct-align/1nfdA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nfdA/nostruct-align/1nfdA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-13615/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.355591
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bkdS
id: 1bkdS   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkdS/nostruct-align/1bkdS.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkdS/nostruct-align/1bkdS.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bkdS/nostruct-align/1bkdS.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4151/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.455688
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1atiB
id: 1atiB   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1atiB/nostruct-align/1atiB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1atiB/nostruct-align/1atiB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1atiB/nostruct-align/1atiB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1866/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.291626
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bq3B
id: 1bq3B   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bq3B/nostruct-align/1bq3B.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bq3B/nostruct-align/1bq3B.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bq3B/nostruct-align/1bq3B.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8636/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.868652
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1anv
id: 1anv   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1anv/nostruct-align/1anv.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1anv/nostruct-align/1anv.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1anv/nostruct-align/1anv.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20232/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.592529
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3nodB
id: 3nodB   alignment found: /projects/compbio/experiments/models.97/pdb/3n/3nodB/nostruct-align/3nodB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3n/3nodB/nostruct-align/3nodB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3n/3nodB/nostruct-align/3nodB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16912/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.555542
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ecrA
id: 1ecrA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ecrA/nostruct-align/1ecrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ecrA/nostruct-align/1ecrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1ecrA/nostruct-align/1ecrA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28452/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.776611
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nfiE
id: 1nfiE   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nfiE/nostruct-align/1nfiE.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nfiE/nostruct-align/1nfiE.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nfiE/nostruct-align/1nfiE.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-9418/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.859619
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bv5
id: 1bv5   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bv5/nostruct-align/1bv5.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bv5/nostruct-align/1bv5.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bv5/nostruct-align/1bv5.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11073/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.804688
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2eiaB
id: 2eiaB   alignment found: /projects/compbio/experiments/models.97/pdb/2e/2eiaB/nostruct-align/2eiaB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2eiaB/nostruct-align/2eiaB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2e/2eiaB/nostruct-align/2eiaB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6603/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.508545
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pex
id: 1pex   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pex/nostruct-align/1pex.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pex/nostruct-align/1pex.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pex/nostruct-align/1pex.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31449/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.739624
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a02N
id: 1a02N   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a02N/nostruct-align/1a02N.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a02N/nostruct-align/1a02N.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a02N/nostruct-align/1a02N.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26318/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.912598
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hkbA
id: 1hkbA   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hkbA/nostruct-align/1hkbA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hkbA/nostruct-align/1hkbA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hkbA/nostruct-align/1hkbA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19937/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.201538
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ahjB
id: 1ahjB   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ahjB/nostruct-align/1ahjB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ahjB/nostruct-align/1ahjB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ahjB/nostruct-align/1ahjB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25414/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.362671
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1smeA
id: 1smeA   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1smeA/nostruct-align/1smeA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1smeA/nostruct-align/1smeA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1smeA/nostruct-align/1smeA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31909/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.265625
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1zid
id: 1zid   alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zid/nostruct-align/1zid.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zid/nostruct-align/1zid.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1z/1zid/nostruct-align/1zid.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3954/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.793579
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1elyA
id: 1elyA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1elyA/nostruct-align/1elyA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1elyA/nostruct-align/1elyA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1elyA/nostruct-align/1elyA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9400/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.533569
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sly
id: 1sly   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sly/nostruct-align/1sly.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sly/nostruct-align/1sly.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sly/nostruct-align/1sly.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28345/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.029541
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cf7B
id: 1cf7B   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cf7B/nostruct-align/1cf7B.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cf7B/nostruct-align/1cf7B.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cf7B/nostruct-align/1cf7B.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22020/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.504639
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1parA
id: 1parA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1parA/nostruct-align/1parA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1parA/nostruct-align/1parA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1parA/nostruct-align/1parA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2499/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.152588
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tkaA
id: 1tkaA   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tkaA/nostruct-align/1tkaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tkaA/nostruct-align/1tkaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tkaA/nostruct-align/1tkaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31942/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.653564
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ggtB
id: 1ggtB   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1ggtB/nostruct-align/1ggtB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1ggtB/nostruct-align/1ggtB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1ggtB/nostruct-align/1ggtB.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-10866/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.646606
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1zbdB
id: 1zbdB   alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zbdB/nostruct-align/1zbdB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zbdB/nostruct-align/1zbdB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1z/1zbdB/nostruct-align/1zbdB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26749/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.793579
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b8bA
id: 1b8bA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8bA/nostruct-align/1b8bA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8bA/nostruct-align/1b8bA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b8bA/nostruct-align/1b8bA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10060/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.047607
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1by3A
id: 1by3A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1by3A/nostruct-align/1by3A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1by3A/nostruct-align/1by3A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1by3A/nostruct-align/1by3A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7689/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -25.140625
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3pbgA
id: 3pbgA   alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pbgA/nostruct-align/3pbgA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pbgA/nostruct-align/3pbgA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3p/3pbgA/nostruct-align/3pbgA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11642/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.218506
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cmkE
id: 1cmkE   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cmkE/nostruct-align/1cmkE.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cmkE/nostruct-align/1cmkE.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cmkE/nostruct-align/1cmkE.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10615/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.439575
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ixmB
id: 1ixmB   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ixmB/nostruct-align/1ixmB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ixmB/nostruct-align/1ixmB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1ixmB/nostruct-align/1ixmB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29953/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.222656
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1arzC
id: 1arzC   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1arzC/nostruct-align/1arzC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1arzC/nostruct-align/1arzC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1arzC/nostruct-align/1arzC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32436/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.804565
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1div
id: 1div   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1div/nostruct-align/1div.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1div/nostruct-align/1div.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1div/nostruct-align/1div.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23503/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.120605
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lrv
id: 1lrv   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lrv/nostruct-align/1lrv.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lrv/nostruct-align/1lrv.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lrv/nostruct-align/1lrv.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31708/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.569580
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bpoA
id: 1bpoA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bpoA/nostruct-align/1bpoA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bpoA/nostruct-align/1bpoA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bpoA/nostruct-align/1bpoA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22669/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.990601
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ab8A
id: 1ab8A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ab8A/nostruct-align/1ab8A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ab8A/nostruct-align/1ab8A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ab8A/nostruct-align/1ab8A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28896/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.136597
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a6f
id: 1a6f   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6f/nostruct-align/1a6f.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6f/nostruct-align/1a6f.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a6f/nostruct-align/1a6f.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22877/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.200562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lktA
id: 1lktA   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lktA/nostruct-align/1lktA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lktA/nostruct-align/1lktA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lktA/nostruct-align/1lktA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5923/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.454590
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2emo
id: 2emo   alignment found: /projects/compbio/experiments/models.97/pdb/2e/2emo/nostruct-align/2emo.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2emo/nostruct-align/2emo.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2e/2emo/nostruct-align/2emo.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32061/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.393555
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cby
id: 1cby   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cby/nostruct-align/1cby.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cby/nostruct-align/1cby.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cby/nostruct-align/1cby.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8991/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.159668
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ofgA
id: 1ofgA   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1ofgA/nostruct-align/1ofgA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1ofgA/nostruct-align/1ofgA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1ofgA/nostruct-align/1ofgA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19467/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.385498
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1avgI
id: 1avgI   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avgI/nostruct-align/1avgI.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avgI/nostruct-align/1avgI.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1avgI/nostruct-align/1avgI.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21883/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.279541
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2pil
id: 2pil   alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pil/nostruct-align/2pil.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pil/nostruct-align/2pil.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2p/2pil/nostruct-align/2pil.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11545/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.810669
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sig
id: 1sig   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sig/nostruct-align/1sig.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sig/nostruct-align/1sig.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sig/nostruct-align/1sig.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1647/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.840576
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1imdA
id: 1imdA   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1imdA/nostruct-align/1imdA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1imdA/nostruct-align/1imdA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1imdA/nostruct-align/1imdA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20291/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.052490
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ps1A
id: 1ps1A   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1ps1A/nostruct-align/1ps1A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1ps1A/nostruct-align/1ps1A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1ps1A/nostruct-align/1ps1A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6623/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.271606
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cawB
id: 1cawB   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cawB/nostruct-align/1cawB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cawB/nostruct-align/1cawB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cawB/nostruct-align/1cawB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13400/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -17.728638
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nksA
id: 1nksA   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nksA/nostruct-align/1nksA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nksA/nostruct-align/1nksA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nksA/nostruct-align/1nksA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15016/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.674561
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lxtA
id: 1lxtA   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lxtA/nostruct-align/1lxtA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lxtA/nostruct-align/1lxtA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lxtA/nostruct-align/1lxtA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17600/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.642578
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ytfC
id: 1ytfC   alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ytfC/nostruct-align/1ytfC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ytfC/nostruct-align/1ytfC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1y/1ytfC/nostruct-align/1ytfC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-629/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.968628
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1914
id: 1914   alignment found: /projects/compbio/experiments/models.97/pdb/19/1914/nostruct-align/1914.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/19/1914/nostruct-align/1914.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/19/1914/nostruct-align/1914.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19397/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.559570
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2itg
id: 2itg   alignment found: /projects/compbio/experiments/models.97/pdb/2i/2itg/nostruct-align/2itg.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2i/2itg/nostruct-align/2itg.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2i/2itg/nostruct-align/2itg.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20110/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.597656
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 6pfkA
id: 6pfkA   alignment found: /projects/compbio/experiments/models.97/pdb/6p/6pfkA/nostruct-align/6pfkA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/6p/6pfkA/nostruct-align/6pfkA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/6p/6pfkA/nostruct-align/6pfkA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26497/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.046509
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cd1A
id: 1cd1A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cd1A/nostruct-align/1cd1A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cd1A/nostruct-align/1cd1A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cd1A/nostruct-align/1cd1A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8721/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.719604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ytfD
id: 1ytfD   alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ytfD/nostruct-align/1ytfD.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ytfD/nostruct-align/1ytfD.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1y/1ytfD/nostruct-align/1ytfD.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31696/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.735596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1kzuB
id: 1kzuB   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kzuB/nostruct-align/1kzuB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kzuB/nostruct-align/1kzuB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1kzuB/nostruct-align/1kzuB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26385/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.402710
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bvp1
id: 1bvp1   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bvp1/nostruct-align/1bvp1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvp1/nostruct-align/1bvp1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bvp1/nostruct-align/1bvp1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-566/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.200562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2shkA
id: 2shkA   alignment found: /projects/compbio/experiments/models.97/pdb/2s/2shkA/nostruct-align/2shkA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2shkA/nostruct-align/2shkA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2s/2shkA/nostruct-align/2shkA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17812/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.556641
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1p04A
id: 1p04A   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1p04A/nostruct-align/1p04A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1p04A/nostruct-align/1p04A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1p04A/nostruct-align/1p04A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-11015/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.125610
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1kzuA
id: 1kzuA   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kzuA/nostruct-align/1kzuA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kzuA/nostruct-align/1kzuA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1kzuA/nostruct-align/1kzuA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15901/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.412598
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rhoC
id: 1rhoC   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rhoC/nostruct-align/1rhoC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rhoC/nostruct-align/1rhoC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rhoC/nostruct-align/1rhoC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24278/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.137695
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2kaiA
id: 2kaiA   alignment found: /projects/compbio/experiments/models.97/pdb/2k/2kaiA/nostruct-align/2kaiA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2k/2kaiA/nostruct-align/2kaiA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2k/2kaiA/nostruct-align/2kaiA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-12362/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.135620
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a0i
id: 1a0i   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a0i/nostruct-align/1a0i.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a0i/nostruct-align/1a0i.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a0i/nostruct-align/1a0i.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3279/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.501587
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ll1
id: 1ll1   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1ll1/nostruct-align/1ll1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1ll1/nostruct-align/1ll1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1ll1/nostruct-align/1ll1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32741/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.547607
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bhjA
id: 1bhjA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhjA/nostruct-align/1bhjA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhjA/nostruct-align/1bhjA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bhjA/nostruct-align/1bhjA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6314/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.863647
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a7j
id: 1a7j   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a7j/nostruct-align/1a7j.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a7j/nostruct-align/1a7j.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a7j/nostruct-align/1a7j.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19837/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.817505
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a0p
id: 1a0p   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a0p/nostruct-align/1a0p.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a0p/nostruct-align/1a0p.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a0p/nostruct-align/1a0p.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2324/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.994507
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1xbrA
id: 1xbrA   alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xbrA/nostruct-align/1xbrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xbrA/nostruct-align/1xbrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1x/1xbrA/nostruct-align/1xbrA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19435/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.097656
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1exnB
id: 1exnB   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1exnB/nostruct-align/1exnB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1exnB/nostruct-align/1exnB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1exnB/nostruct-align/1exnB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25847/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.080566
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1jkw
id: 1jkw   alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jkw/nostruct-align/1jkw.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jkw/nostruct-align/1jkw.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1j/1jkw/nostruct-align/1jkw.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10873/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.514648
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aua
id: 1aua   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aua/nostruct-align/1aua.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aua/nostruct-align/1aua.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aua/nostruct-align/1aua.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1107/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.315552
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cknA
id: 1cknA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cknA/nostruct-align/1cknA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cknA/nostruct-align/1cknA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cknA/nostruct-align/1cknA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13387/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.424683
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1umuB
id: 1umuB   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1umuB/nostruct-align/1umuB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1umuB/nostruct-align/1umuB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1umuB/nostruct-align/1umuB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26021/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.924683
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3crxA
id: 3crxA   alignment found: /projects/compbio/experiments/models.97/pdb/3c/3crxA/nostruct-align/3crxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3crxA/nostruct-align/3crxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3c/3crxA/nostruct-align/3crxA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30898/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.831665
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1an9A
id: 1an9A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1an9A/nostruct-align/1an9A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1an9A/nostruct-align/1an9A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1an9A/nostruct-align/1an9A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18791/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.172607
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b5tA
id: 1b5tA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b5tA/nostruct-align/1b5tA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b5tA/nostruct-align/1b5tA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b5tA/nostruct-align/1b5tA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31638/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.148682
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1itbB
id: 1itbB   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1itbB/nostruct-align/1itbB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1itbB/nostruct-align/1itbB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1itbB/nostruct-align/1itbB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22981/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.656616
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aojA
id: 1aojA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aojA/nostruct-align/1aojA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aojA/nostruct-align/1aojA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aojA/nostruct-align/1aojA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30331/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.904663
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2thiA
id: 2thiA   alignment found: /projects/compbio/experiments/models.97/pdb/2t/2thiA/nostruct-align/2thiA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2thiA/nostruct-align/2thiA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2t/2thiA/nostruct-align/2thiA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22274/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.100586
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1joa
id: 1joa   alignment found: /projects/compbio/experiments/models.97/pdb/1j/1joa/nostruct-align/1joa.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1joa/nostruct-align/1joa.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1j/1joa/nostruct-align/1joa.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5657/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.131592
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mspA
id: 1mspA   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mspA/nostruct-align/1mspA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mspA/nostruct-align/1mspA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mspA/nostruct-align/1mspA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15316/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.546509
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cg2A
id: 1cg2A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cg2A/nostruct-align/1cg2A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cg2A/nostruct-align/1cg2A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cg2A/nostruct-align/1cg2A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9303/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.046509
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1poiA
id: 1poiA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1poiA/nostruct-align/1poiA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1poiA/nostruct-align/1poiA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1poiA/nostruct-align/1poiA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23753/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.242554
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qg0A
id: 1qg0A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qg0A/nostruct-align/1qg0A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qg0A/nostruct-align/1qg0A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qg0A/nostruct-align/1qg0A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15735/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.355591
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bxwA
id: 1bxwA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxwA/nostruct-align/1bxwA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxwA/nostruct-align/1bxwA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bxwA/nostruct-align/1bxwA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24182/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -15.238647
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lnh
id: 1lnh   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lnh/nostruct-align/1lnh.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lnh/nostruct-align/1lnh.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lnh/nostruct-align/1lnh.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25882/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.156616
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aurA
id: 1aurA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aurA/nostruct-align/1aurA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aurA/nostruct-align/1aurA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aurA/nostruct-align/1aurA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14781/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.605591
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1kcw
id: 1kcw   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kcw/nostruct-align/1kcw.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kcw/nostruct-align/1kcw.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1kcw/nostruct-align/1kcw.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26212/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -15.885498
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2polA
id: 2polA   alignment found: /projects/compbio/experiments/models.97/pdb/2p/2polA/nostruct-align/2polA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2polA/nostruct-align/2polA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2p/2polA/nostruct-align/2polA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4418/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.658569
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2gpr
id: 2gpr   alignment found: /projects/compbio/experiments/models.97/pdb/2g/2gpr/nostruct-align/2gpr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2g/2gpr/nostruct-align/2gpr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2g/2gpr/nostruct-align/2gpr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1773/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.813599
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2viuB
id: 2viuB   alignment found: /projects/compbio/experiments/models.97/pdb/2v/2viuB/nostruct-align/2viuB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2v/2viuB/nostruct-align/2viuB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2v/2viuB/nostruct-align/2viuB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6387/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.701660
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1knyA
id: 1knyA   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1knyA/nostruct-align/1knyA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1knyA/nostruct-align/1knyA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1knyA/nostruct-align/1knyA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9726/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.666626
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dhpA
id: 1dhpA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dhpA/nostruct-align/1dhpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dhpA/nostruct-align/1dhpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dhpA/nostruct-align/1dhpA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29187/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.097656
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1juk
id: 1juk   alignment found: /projects/compbio/experiments/models.97/pdb/1j/1juk/nostruct-align/1juk.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1juk/nostruct-align/1juk.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1j/1juk/nostruct-align/1juk.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4768/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.133667
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fuiA
id: 1fuiA   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fuiA/nostruct-align/1fuiA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fuiA/nostruct-align/1fuiA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fuiA/nostruct-align/1fuiA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20361/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.638672
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2hntE
id: 2hntE   alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hntE/nostruct-align/2hntE.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hntE/nostruct-align/2hntE.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2h/2hntE/nostruct-align/2hntE.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-13862/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.505615
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pyaB
id: 1pyaB   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pyaB/nostruct-align/1pyaB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pyaB/nostruct-align/1pyaB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pyaB/nostruct-align/1pyaB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24431/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.808594
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bykA
id: 1bykA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bykA/nostruct-align/1bykA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bykA/nostruct-align/1bykA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bykA/nostruct-align/1bykA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14429/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.307617
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ai7A
id: 1ai7A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ai7A/nostruct-align/1ai7A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ai7A/nostruct-align/1ai7A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ai7A/nostruct-align/1ai7A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32352/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.110596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lpbA
id: 1lpbA   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lpbA/nostruct-align/1lpbA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lpbA/nostruct-align/1lpbA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lpbA/nostruct-align/1lpbA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31809/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.607666
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qawF
id: 1qawF   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qawF/nostruct-align/1qawF.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qawF/nostruct-align/1qawF.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qawF/nostruct-align/1qawF.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-14571/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.212524
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sfcB
id: 1sfcB   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sfcB/nostruct-align/1sfcB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sfcB/nostruct-align/1sfcB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sfcB/nostruct-align/1sfcB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9685/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.777588
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sfcE
id: 1sfcE   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sfcE/nostruct-align/1sfcE.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sfcE/nostruct-align/1sfcE.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sfcE/nostruct-align/1sfcE.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3460/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.007690
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sfcD
id: 1sfcD   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sfcD/nostruct-align/1sfcD.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sfcD/nostruct-align/1sfcD.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sfcD/nostruct-align/1sfcD.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20370/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.600586
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tc3C
id: 1tc3C   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tc3C/nostruct-align/1tc3C.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tc3C/nostruct-align/1tc3C.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tc3C/nostruct-align/1tc3C.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13041/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.758545
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nmtA
id: 1nmtA   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nmtA/nostruct-align/1nmtA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nmtA/nostruct-align/1nmtA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nmtA/nostruct-align/1nmtA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25183/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.189575
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ao6A
id: 1ao6A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ao6A/nostruct-align/1ao6A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ao6A/nostruct-align/1ao6A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ao6A/nostruct-align/1ao6A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8562/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.012573
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1jacA
id: 1jacA   alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jacA/nostruct-align/1jacA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jacA/nostruct-align/1jacA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1j/1jacA/nostruct-align/1jacA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27657/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.053589
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1afrA
id: 1afrA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1afrA/nostruct-align/1afrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1afrA/nostruct-align/1afrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1afrA/nostruct-align/1afrA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11306/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.468506
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bp1
id: 1bp1   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bp1/nostruct-align/1bp1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bp1/nostruct-align/1bp1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bp1/nostruct-align/1bp1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21216/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.914673
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1euu
id: 1euu   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1euu/nostruct-align/1euu.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1euu/nostruct-align/1euu.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1euu/nostruct-align/1euu.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21687/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -26.115601
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2viuA
id: 2viuA   alignment found: /projects/compbio/experiments/models.97/pdb/2v/2viuA/nostruct-align/2viuA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2v/2viuA/nostruct-align/2viuA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2v/2viuA/nostruct-align/2viuA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6554/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.746582
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1jmcA
id: 1jmcA   alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jmcA/nostruct-align/1jmcA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jmcA/nostruct-align/1jmcA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1j/1jmcA/nostruct-align/1jmcA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20969/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.743652
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lghA
id: 1lghA   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lghA/nostruct-align/1lghA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lghA/nostruct-align/1lghA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lghA/nostruct-align/1lghA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20612/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.183594
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cnt2
id: 1cnt2   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cnt2/nostruct-align/1cnt2.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cnt2/nostruct-align/1cnt2.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cnt2/nostruct-align/1cnt2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1419/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.782593
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rlw
id: 1rlw   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rlw/nostruct-align/1rlw.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rlw/nostruct-align/1rlw.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rlw/nostruct-align/1rlw.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13989/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.434570
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ihp
id: 1ihp   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ihp/nostruct-align/1ihp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ihp/nostruct-align/1ihp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1ihp/nostruct-align/1ihp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28899/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.078613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ax8
id: 1ax8   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ax8/nostruct-align/1ax8.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ax8/nostruct-align/1ax8.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ax8/nostruct-align/1ax8.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26276/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.956543
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2trcP
id: 2trcP   alignment found: /projects/compbio/experiments/models.97/pdb/2t/2trcP/nostruct-align/2trcP.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2trcP/nostruct-align/2trcP.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2t/2trcP/nostruct-align/2trcP.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10375/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.586670
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b3nA
id: 1b3nA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3nA/nostruct-align/1b3nA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3nA/nostruct-align/1b3nA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b3nA/nostruct-align/1b3nA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6140/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.867554
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1xtcC
id: 1xtcC   alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xtcC/nostruct-align/1xtcC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xtcC/nostruct-align/1xtcC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1x/1xtcC/nostruct-align/1xtcC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17455/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.502563
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3ullA
id: 3ullA   alignment found: /projects/compbio/experiments/models.97/pdb/3u/3ullA/nostruct-align/3ullA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3u/3ullA/nostruct-align/3ullA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3u/3ullA/nostruct-align/3ullA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3277/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.413574
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1eaiC
id: 1eaiC   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eaiC/nostruct-align/1eaiC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eaiC/nostruct-align/1eaiC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1eaiC/nostruct-align/1eaiC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27206/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.848633
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ypdA
id: 1ypdA   alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ypdA/nostruct-align/1ypdA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ypdA/nostruct-align/1ypdA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1y/1ypdA/nostruct-align/1ypdA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25708/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.958618
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2dubE
id: 2dubE   alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dubE/nostruct-align/2dubE.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dubE/nostruct-align/2dubE.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2d/2dubE/nostruct-align/2dubE.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9311/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.297607
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2mprA
id: 2mprA   alignment found: /projects/compbio/experiments/models.97/pdb/2m/2mprA/nostruct-align/2mprA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2mprA/nostruct-align/2mprA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2m/2mprA/nostruct-align/2mprA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15021/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.910645
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2liv
id: 2liv   alignment found: /projects/compbio/experiments/models.97/pdb/2l/2liv/nostruct-align/2liv.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2liv/nostruct-align/2liv.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2l/2liv/nostruct-align/2liv.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13187/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.432617
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dlc
id: 1dlc   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dlc/nostruct-align/1dlc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dlc/nostruct-align/1dlc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dlc/nostruct-align/1dlc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30152/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -20.199585
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1chkA
id: 1chkA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1chkA/nostruct-align/1chkA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1chkA/nostruct-align/1chkA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1chkA/nostruct-align/1chkA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8020/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.724487
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4lbd
id: 4lbd   alignment found: /projects/compbio/experiments/models.97/pdb/4l/4lbd/nostruct-align/4lbd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/4l/4lbd/nostruct-align/4lbd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/4l/4lbd/nostruct-align/4lbd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10490/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.841675
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1an8
id: 1an8   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1an8/nostruct-align/1an8.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1an8/nostruct-align/1an8.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1an8/nostruct-align/1an8.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22376/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.104614
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3nll
id: 3nll   alignment found: /projects/compbio/experiments/models.97/pdb/3n/3nll/nostruct-align/3nll.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3n/3nll/nostruct-align/3nll.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3n/3nll/nostruct-align/3nll.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29593/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.849609
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1kb5B
id: 1kb5B   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kb5B/nostruct-align/1kb5B.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kb5B/nostruct-align/1kb5B.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1kb5B/nostruct-align/1kb5B.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10901/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.285522
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2tmkA
id: 2tmkA   alignment found: /projects/compbio/experiments/models.97/pdb/2t/2tmkA/nostruct-align/2tmkA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2tmkA/nostruct-align/2tmkA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2t/2tmkA/nostruct-align/2tmkA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29282/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.132690
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ayyA
id: 1ayyA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ayyA/nostruct-align/1ayyA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ayyA/nostruct-align/1ayyA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ayyA/nostruct-align/1ayyA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14898/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.339600
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fzcA
id: 1fzcA   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fzcA/nostruct-align/1fzcA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fzcA/nostruct-align/1fzcA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fzcA/nostruct-align/1fzcA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-797/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.746582
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bl0A
id: 1bl0A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bl0A/nostruct-align/1bl0A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bl0A/nostruct-align/1bl0A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bl0A/nostruct-align/1bl0A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16197/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.528687
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c25
id: 1c25   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c25/nostruct-align/1c25.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c25/nostruct-align/1c25.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c25/nostruct-align/1c25.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27876/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.558594
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1g31A
id: 1g31A   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1g31A/nostruct-align/1g31A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1g31A/nostruct-align/1g31A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1g31A/nostruct-align/1g31A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13047/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.014648
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2occH
id: 2occH   alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occH/nostruct-align/2occH.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occH/nostruct-align/2occH.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2o/2occH/nostruct-align/2occH.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14988/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.486572
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2occE
id: 2occE   alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occE/nostruct-align/2occE.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occE/nostruct-align/2occE.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2o/2occE/nostruct-align/2occE.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5632/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.800659
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2occD
id: 2occD   alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occD/nostruct-align/2occD.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occD/nostruct-align/2occD.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2o/2occD/nostruct-align/2occD.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23912/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.974609
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3pcnA
id: 3pcnA   alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pcnA/nostruct-align/3pcnA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pcnA/nostruct-align/3pcnA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3p/3pcnA/nostruct-align/3pcnA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12790/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.564575
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2occF
id: 2occF   alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occF/nostruct-align/2occF.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occF/nostruct-align/2occF.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2o/2occF/nostruct-align/2occF.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19796/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.244629
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1toh
id: 1toh   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1toh/nostruct-align/1toh.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1toh/nostruct-align/1toh.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1toh/nostruct-align/1toh.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31913/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.826538
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2occL
id: 2occL   alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occL/nostruct-align/2occL.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occL/nostruct-align/2occL.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2o/2occL/nostruct-align/2occL.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-245/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.800659
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2dynA
id: 2dynA   alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dynA/nostruct-align/2dynA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dynA/nostruct-align/2dynA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2d/2dynA/nostruct-align/2dynA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1912/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.080688
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2occK
id: 2occK   alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occK/nostruct-align/2occK.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occK/nostruct-align/2occK.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2o/2occK/nostruct-align/2occK.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14435/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.138672
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a8y
id: 1a8y   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8y/nostruct-align/1a8y.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8y/nostruct-align/1a8y.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a8y/nostruct-align/1a8y.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6378/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.406616
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aj6
id: 1aj6   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aj6/nostruct-align/1aj6.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aj6/nostruct-align/1aj6.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aj6/nostruct-align/1aj6.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4439/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.875610
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2dpg
id: 2dpg   alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dpg/nostruct-align/2dpg.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dpg/nostruct-align/2dpg.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2d/2dpg/nostruct-align/2dpg.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20914/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.111694
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mnd
id: 1mnd   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mnd/nostruct-align/1mnd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mnd/nostruct-align/1mnd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mnd/nostruct-align/1mnd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22541/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.037598
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fgs
id: 1fgs   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fgs/nostruct-align/1fgs.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fgs/nostruct-align/1fgs.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fgs/nostruct-align/1fgs.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23714/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.459595
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3mddA
id: 3mddA   alignment found: /projects/compbio/experiments/models.97/pdb/3m/3mddA/nostruct-align/3mddA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3m/3mddA/nostruct-align/3mddA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3m/3mddA/nostruct-align/3mddA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19099/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.084595
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cbuA
id: 1cbuA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cbuA/nostruct-align/1cbuA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cbuA/nostruct-align/1cbuA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cbuA/nostruct-align/1cbuA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6165/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.808594
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bo4B
id: 1bo4B   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bo4B/nostruct-align/1bo4B.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bo4B/nostruct-align/1bo4B.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bo4B/nostruct-align/1bo4B.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-16270/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.543579
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ak4C
id: 1ak4C   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ak4C/nostruct-align/1ak4C.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ak4C/nostruct-align/1ak4C.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ak4C/nostruct-align/1ak4C.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31573/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.986572
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ar0A
id: 1ar0A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ar0A/nostruct-align/1ar0A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ar0A/nostruct-align/1ar0A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ar0A/nostruct-align/1ar0A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13965/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.300537
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1slvA
id: 1slvA   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1slvA/nostruct-align/1slvA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1slvA/nostruct-align/1slvA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1slvA/nostruct-align/1slvA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.220581
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aerA
id: 1aerA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aerA/nostruct-align/1aerA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aerA/nostruct-align/1aerA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aerA/nostruct-align/1aerA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18421/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.087646
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bob
id: 1bob   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bob/nostruct-align/1bob.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bob/nostruct-align/1bob.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bob/nostruct-align/1bob.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14513/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.591675
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ad6
id: 1ad6   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ad6/nostruct-align/1ad6.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ad6/nostruct-align/1ad6.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ad6/nostruct-align/1ad6.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13262/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.356567
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ycqA
id: 1ycqA   alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ycqA/nostruct-align/1ycqA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ycqA/nostruct-align/1ycqA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1y/1ycqA/nostruct-align/1ycqA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18652/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.261597
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2masA
id: 2masA   alignment found: /projects/compbio/experiments/models.97/pdb/2m/2masA/nostruct-align/2masA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2masA/nostruct-align/2masA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2m/2masA/nostruct-align/2masA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22065/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.240601
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1e2aA
id: 1e2aA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1e2aA/nostruct-align/1e2aA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1e2aA/nostruct-align/1e2aA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1e2aA/nostruct-align/1e2aA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29239/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.874634
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1jsuC
id: 1jsuC   alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jsuC/nostruct-align/1jsuC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jsuC/nostruct-align/1jsuC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1j/1jsuC/nostruct-align/1jsuC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1798/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.665527
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cfyA
id: 1cfyA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cfyA/nostruct-align/1cfyA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cfyA/nostruct-align/1cfyA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cfyA/nostruct-align/1cfyA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31258/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.904541
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4htcI
id: 4htcI   alignment found: /projects/compbio/experiments/models.97/pdb/4h/4htcI/nostruct-align/4htcI.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/4h/4htcI/nostruct-align/4htcI.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/4h/4htcI/nostruct-align/4htcI.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12140/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.005615
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1auq
id: 1auq   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auq/nostruct-align/1auq.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auq/nostruct-align/1auq.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1auq/nostruct-align/1auq.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22732/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.982544
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 6prcC
id: 6prcC   alignment found: /projects/compbio/experiments/models.97/pdb/6p/6prcC/nostruct-align/6prcC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/6p/6prcC/nostruct-align/6prcC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/6p/6prcC/nostruct-align/6prcC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22985/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.920532
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rpxA
id: 1rpxA   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rpxA/nostruct-align/1rpxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rpxA/nostruct-align/1rpxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rpxA/nostruct-align/1rpxA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30351/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.454590
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dhy
id: 1dhy   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dhy/nostruct-align/1dhy.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dhy/nostruct-align/1dhy.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dhy/nostruct-align/1dhy.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23882/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.869629
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aw5
id: 1aw5   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aw5/nostruct-align/1aw5.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aw5/nostruct-align/1aw5.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aw5/nostruct-align/1aw5.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22607/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.614624
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1am7A
id: 1am7A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1am7A/nostruct-align/1am7A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1am7A/nostruct-align/1am7A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1am7A/nostruct-align/1am7A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31360/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.377686
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ignA
id: 1ignA   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ignA/nostruct-align/1ignA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ignA/nostruct-align/1ignA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1ignA/nostruct-align/1ignA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18172/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.000610
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ipwA
id: 1ipwA   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ipwA/nostruct-align/1ipwA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ipwA/nostruct-align/1ipwA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1ipwA/nostruct-align/1ipwA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19442/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.877563
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tiiD
id: 1tiiD   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tiiD/nostruct-align/1tiiD.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tiiD/nostruct-align/1tiiD.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tiiD/nostruct-align/1tiiD.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6792/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.731689
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mnmC
id: 1mnmC   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mnmC/nostruct-align/1mnmC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mnmC/nostruct-align/1mnmC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mnmC/nostruct-align/1mnmC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18648/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.191650
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 8ohm
id: 8ohm   alignment found: /projects/compbio/experiments/models.97/pdb/8o/8ohm/nostruct-align/8ohm.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/8o/8ohm/nostruct-align/8ohm.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/8o/8ohm/nostruct-align/8ohm.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30068/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.598633
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ndoB
id: 1ndoB   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1ndoB/nostruct-align/1ndoB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1ndoB/nostruct-align/1ndoB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1ndoB/nostruct-align/1ndoB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10524/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.626587
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1p32C
id: 1p32C   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1p32C/nostruct-align/1p32C.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1p32C/nostruct-align/1p32C.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1p32C/nostruct-align/1p32C.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15556/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.314575
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tyfA
id: 1tyfA   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tyfA/nostruct-align/1tyfA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tyfA/nostruct-align/1tyfA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tyfA/nostruct-align/1tyfA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6534/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.125610
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aorA
id: 1aorA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aorA/nostruct-align/1aorA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aorA/nostruct-align/1aorA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aorA/nostruct-align/1aorA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11103/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.702637
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ft1A
id: 1ft1A   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1ft1A/nostruct-align/1ft1A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1ft1A/nostruct-align/1ft1A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1ft1A/nostruct-align/1ft1A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8072/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.469604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1beo
id: 1beo   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1beo/nostruct-align/1beo.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1beo/nostruct-align/1beo.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1beo/nostruct-align/1beo.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17564/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.997681
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1smtB
id: 1smtB   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1smtB/nostruct-align/1smtB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1smtB/nostruct-align/1smtB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1smtB/nostruct-align/1smtB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1004/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.245605
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b24A
id: 1b24A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b24A/nostruct-align/1b24A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b24A/nostruct-align/1b24A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b24A/nostruct-align/1b24A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17882/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.575684
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aa0
id: 1aa0   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aa0/nostruct-align/1aa0.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aa0/nostruct-align/1aa0.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aa0/nostruct-align/1aa0.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14122/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.620605
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b47A
id: 1b47A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b47A/nostruct-align/1b47A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b47A/nostruct-align/1b47A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b47A/nostruct-align/1b47A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1242/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.202637
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a26
id: 1a26   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a26/nostruct-align/1a26.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a26/nostruct-align/1a26.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a26/nostruct-align/1a26.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29936/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.753662
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bncB
id: 1bncB   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bncB/nostruct-align/1bncB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bncB/nostruct-align/1bncB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bncB/nostruct-align/1bncB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10059/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.898682
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b3tA
id: 1b3tA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3tA/nostruct-align/1b3tA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3tA/nostruct-align/1b3tA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b3tA/nostruct-align/1b3tA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11856/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.504639
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bc5A
id: 1bc5A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bc5A/nostruct-align/1bc5A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bc5A/nostruct-align/1bc5A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bc5A/nostruct-align/1bc5A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17191/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.389526
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ca4A
id: 1ca4A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ca4A/nostruct-align/1ca4A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ca4A/nostruct-align/1ca4A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1ca4A/nostruct-align/1ca4A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20334/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.099609
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1zxq
id: 1zxq   alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zxq/nostruct-align/1zxq.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zxq/nostruct-align/1zxq.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1z/1zxq/nostruct-align/1zxq.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14413/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.599609
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aw8E
id: 1aw8E   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aw8E/nostruct-align/1aw8E.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aw8E/nostruct-align/1aw8E.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aw8E/nostruct-align/1aw8E.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26120/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.514648
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bdyA
id: 1bdyA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bdyA/nostruct-align/1bdyA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bdyA/nostruct-align/1bdyA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bdyA/nostruct-align/1bdyA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10293/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.292603
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nsgB
id: 1nsgB   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nsgB/nostruct-align/1nsgB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nsgB/nostruct-align/1nsgB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nsgB/nostruct-align/1nsgB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28866/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.104614
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1maz
id: 1maz   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1maz/nostruct-align/1maz.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1maz/nostruct-align/1maz.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1maz/nostruct-align/1maz.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18013/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.319702
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bfeA
id: 1bfeA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bfeA/nostruct-align/1bfeA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bfeA/nostruct-align/1bfeA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bfeA/nostruct-align/1bfeA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27926/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.858643
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1etpA
id: 1etpA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1etpA/nostruct-align/1etpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1etpA/nostruct-align/1etpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1etpA/nostruct-align/1etpA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1520/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.583618
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ft1B
id: 1ft1B   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1ft1B/nostruct-align/1ft1B.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1ft1B/nostruct-align/1ft1B.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1ft1B/nostruct-align/1ft1B.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13782/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.573608
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aijL
id: 1aijL   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aijL/nostruct-align/1aijL.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aijL/nostruct-align/1aijL.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aijL/nostruct-align/1aijL.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23707/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.909546
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1jxpA
id: 1jxpA   alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jxpA/nostruct-align/1jxpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jxpA/nostruct-align/1jxpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1j/1jxpA/nostruct-align/1jxpA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27033/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.566650
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1delA
id: 1delA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1delA/nostruct-align/1delA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1delA/nostruct-align/1delA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1delA/nostruct-align/1delA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-291/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.404663
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tul
id: 1tul   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tul/nostruct-align/1tul.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tul/nostruct-align/1tul.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tul/nostruct-align/1tul.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8019/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.588623
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1jlyA
id: 1jlyA   alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jlyA/nostruct-align/1jlyA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jlyA/nostruct-align/1jlyA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1j/1jlyA/nostruct-align/1jlyA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10854/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.639648
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3dapA
id: 3dapA   alignment found: /projects/compbio/experiments/models.97/pdb/3d/3dapA/nostruct-align/3dapA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3d/3dapA/nostruct-align/3dapA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3d/3dapA/nostruct-align/3dapA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10578/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.786621
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ftpA
id: 1ftpA   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1ftpA/nostruct-align/1ftpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1ftpA/nostruct-align/1ftpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1ftpA/nostruct-align/1ftpA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27983/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.686523
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2occA
id: 2occA   alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occA/nostruct-align/2occA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occA/nostruct-align/2occA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2o/2occA/nostruct-align/2occA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17696/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.134644
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nozA
id: 1nozA   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nozA/nostruct-align/1nozA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nozA/nostruct-align/1nozA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nozA/nostruct-align/1nozA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12704/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.470581
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ndoA
id: 1ndoA   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1ndoA/nostruct-align/1ndoA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1ndoA/nostruct-align/1ndoA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1ndoA/nostruct-align/1ndoA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29853/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.193604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bh5A
id: 1bh5A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bh5A/nostruct-align/1bh5A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bh5A/nostruct-align/1bh5A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bh5A/nostruct-align/1bh5A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-20593/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.202637
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bg8A
id: 1bg8A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bg8A/nostruct-align/1bg8A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bg8A/nostruct-align/1bg8A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bg8A/nostruct-align/1bg8A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11109/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.776489
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 12asA
id: 12asA   alignment found: /projects/compbio/experiments/models.97/pdb/12/12asA/nostruct-align/12asA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/12/12asA/nostruct-align/12asA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/12/12asA/nostruct-align/12asA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22251/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.256714
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bouA
id: 1bouA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bouA/nostruct-align/1bouA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bouA/nostruct-align/1bouA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bouA/nostruct-align/1bouA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27542/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.546509
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1auvA
id: 1auvA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auvA/nostruct-align/1auvA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auvA/nostruct-align/1auvA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1auvA/nostruct-align/1auvA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21108/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.148560
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b8kA
id: 1b8kA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8kA/nostruct-align/1b8kA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8kA/nostruct-align/1b8kA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b8kA/nostruct-align/1b8kA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5764/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.643555
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bouB
id: 1bouB   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bouB/nostruct-align/1bouB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bouB/nostruct-align/1bouB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bouB/nostruct-align/1bouB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13789/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.656616
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cfr
id: 1cfr   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cfr/nostruct-align/1cfr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cfr/nostruct-align/1cfr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cfr/nostruct-align/1cfr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12336/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.403687
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1br9
id: 1br9   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1br9/nostruct-align/1br9.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1br9/nostruct-align/1br9.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1br9/nostruct-align/1br9.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.499634
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b54
id: 1b54   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b54/nostruct-align/1b54.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b54/nostruct-align/1b54.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b54/nostruct-align/1b54.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27248/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.805542
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sfe
id: 1sfe   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sfe/nostruct-align/1sfe.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sfe/nostruct-align/1sfe.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sfe/nostruct-align/1sfe.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13885/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.795532
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b77A
id: 1b77A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b77A/nostruct-align/1b77A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b77A/nostruct-align/1b77A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b77A/nostruct-align/1b77A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21187/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.548584
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1abrB
id: 1abrB   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1abrB/nostruct-align/1abrB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1abrB/nostruct-align/1abrB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1abrB/nostruct-align/1abrB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14409/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.207642
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rmd
id: 1rmd   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rmd/nostruct-align/1rmd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rmd/nostruct-align/1rmd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rmd/nostruct-align/1rmd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-305/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.516602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gc1G
id: 1gc1G   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gc1G/nostruct-align/1gc1G.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gc1G/nostruct-align/1gc1G.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gc1G/nostruct-align/1gc1G.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32334/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.125610
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1as4B
id: 1as4B   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1as4B/nostruct-align/1as4B.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1as4B/nostruct-align/1as4B.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1as4B/nostruct-align/1as4B.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32617/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.965576
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ygs
id: 1ygs   alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ygs/nostruct-align/1ygs.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ygs/nostruct-align/1ygs.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1y/1ygs/nostruct-align/1ygs.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29788/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.632690
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1auk
id: 1auk   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auk/nostruct-align/1auk.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auk/nostruct-align/1auk.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1auk/nostruct-align/1auk.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25173/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.878662
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mvpA
id: 1mvpA   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mvpA/nostruct-align/1mvpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mvpA/nostruct-align/1mvpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mvpA/nostruct-align/1mvpA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26985/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.460571
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1axiB
id: 1axiB   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1axiB/nostruct-align/1axiB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1axiB/nostruct-align/1axiB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1axiB/nostruct-align/1axiB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22432/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.713623
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1kvs
id: 1kvs   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kvs/nostruct-align/1kvs.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kvs/nostruct-align/1kvs.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1kvs/nostruct-align/1kvs.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5420/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.285522
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1goh
id: 1goh   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1goh/nostruct-align/1goh.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1goh/nostruct-align/1goh.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1goh/nostruct-align/1goh.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13905/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -16.630615
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 5eau
id: 5eau   alignment found: /projects/compbio/experiments/models.97/pdb/5e/5eau/nostruct-align/5eau.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/5e/5eau/nostruct-align/5eau.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/5e/5eau/nostruct-align/5eau.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24910/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.521606
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1csbB
id: 1csbB   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1csbB/nostruct-align/1csbB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1csbB/nostruct-align/1csbB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1csbB/nostruct-align/1csbB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26953/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.416626
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a0fA
id: 1a0fA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a0fA/nostruct-align/1a0fA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a0fA/nostruct-align/1a0fA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a0fA/nostruct-align/1a0fA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20824/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.990601
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2std
id: 2std   alignment found: /projects/compbio/experiments/models.97/pdb/2s/2std/nostruct-align/2std.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2std/nostruct-align/2std.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2s/2std/nostruct-align/2std.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9223/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.001587
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1acc
id: 1acc   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1acc/nostruct-align/1acc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1acc/nostruct-align/1acc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1acc/nostruct-align/1acc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9040/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -18.201660
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bg1A
id: 1bg1A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bg1A/nostruct-align/1bg1A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bg1A/nostruct-align/1bg1A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bg1A/nostruct-align/1bg1A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23355/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.484619
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a4sA
id: 1a4sA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a4sA/nostruct-align/1a4sA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a4sA/nostruct-align/1a4sA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a4sA/nostruct-align/1a4sA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14865/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.440674
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dar
id: 1dar   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dar/nostruct-align/1dar.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dar/nostruct-align/1dar.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dar/nostruct-align/1dar.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5072/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.457520
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a49A
id: 1a49A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a49A/nostruct-align/1a49A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a49A/nostruct-align/1a49A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a49A/nostruct-align/1a49A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32529/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.245605
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ax4A
id: 1ax4A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ax4A/nostruct-align/1ax4A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ax4A/nostruct-align/1ax4A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ax4A/nostruct-align/1ax4A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6710/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.205688
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vdfA
id: 1vdfA   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vdfA/nostruct-align/1vdfA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vdfA/nostruct-align/1vdfA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vdfA/nostruct-align/1vdfA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23956/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.304688
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rl6A
id: 1rl6A   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rl6A/nostruct-align/1rl6A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rl6A/nostruct-align/1rl6A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rl6A/nostruct-align/1rl6A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20407/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.795532
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1efvA
id: 1efvA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1efvA/nostruct-align/1efvA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1efvA/nostruct-align/1efvA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1efvA/nostruct-align/1efvA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22045/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.773560
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aikC
id: 1aikC   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aikC/nostruct-align/1aikC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aikC/nostruct-align/1aikC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aikC/nostruct-align/1aikC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30422/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.878540
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ycsB
id: 1ycsB   alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ycsB/nostruct-align/1ycsB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ycsB/nostruct-align/1ycsB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1y/1ycsB/nostruct-align/1ycsB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25709/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.201660
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1wpoB
id: 1wpoB   alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wpoB/nostruct-align/1wpoB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wpoB/nostruct-align/1wpoB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1w/1wpoB/nostruct-align/1wpoB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9423/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.800659
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a1x
id: 1a1x   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a1x/nostruct-align/1a1x.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a1x/nostruct-align/1a1x.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a1x/nostruct-align/1a1x.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6117/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.746582
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tfr
id: 1tfr   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tfr/nostruct-align/1tfr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tfr/nostruct-align/1tfr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tfr/nostruct-align/1tfr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9584/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.732666
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fmtB
id: 1fmtB   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fmtB/nostruct-align/1fmtB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fmtB/nostruct-align/1fmtB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fmtB/nostruct-align/1fmtB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29030/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.622681
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vin
id: 1vin   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vin/nostruct-align/1vin.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vin/nostruct-align/1vin.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vin/nostruct-align/1vin.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14037/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.306641
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fjmA
id: 1fjmA   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fjmA/nostruct-align/1fjmA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fjmA/nostruct-align/1fjmA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fjmA/nostruct-align/1fjmA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30107/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.790649
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aol
id: 1aol   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aol/nostruct-align/1aol.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aol/nostruct-align/1aol.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aol/nostruct-align/1aol.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30316/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.644653
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a6q
id: 1a6q   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6q/nostruct-align/1a6q.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6q/nostruct-align/1a6q.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a6q/nostruct-align/1a6q.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24844/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.520508
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bvyF
id: 1bvyF   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bvyF/nostruct-align/1bvyF.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvyF/nostruct-align/1bvyF.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bvyF/nostruct-align/1bvyF.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5995/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.992676
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rlaA
id: 1rlaA   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rlaA/nostruct-align/1rlaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rlaA/nostruct-align/1rlaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rlaA/nostruct-align/1rlaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1571/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.544556
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1spuB
id: 1spuB   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1spuB/nostruct-align/1spuB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1spuB/nostruct-align/1spuB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1spuB/nostruct-align/1spuB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3711/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.480713
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1reqD
id: 1reqD   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1reqD/nostruct-align/1reqD.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1reqD/nostruct-align/1reqD.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1reqD/nostruct-align/1reqD.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20254/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.858521
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1jpc
id: 1jpc   alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jpc/nostruct-align/1jpc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jpc/nostruct-align/1jpc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1j/1jpc/nostruct-align/1jpc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12411/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.732666
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3minC
id: 3minC   alignment found: /projects/compbio/experiments/models.97/pdb/3m/3minC/nostruct-align/3minC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3m/3minC/nostruct-align/3minC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3m/3minC/nostruct-align/3minC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27614/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.426636
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1prxB
id: 1prxB   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1prxB/nostruct-align/1prxB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1prxB/nostruct-align/1prxB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1prxB/nostruct-align/1prxB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30193/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.575684
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b4fG
id: 1b4fG   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4fG/nostruct-align/1b4fG.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4fG/nostruct-align/1b4fG.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b4fG/nostruct-align/1b4fG.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28113/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.951660
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2fivA
id: 2fivA   alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fivA/nostruct-align/2fivA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fivA/nostruct-align/2fivA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2f/2fivA/nostruct-align/2fivA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2654/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.854614
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bc8C
id: 1bc8C   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bc8C/nostruct-align/1bc8C.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bc8C/nostruct-align/1bc8C.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bc8C/nostruct-align/1bc8C.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14569/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.664551
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1kwaB
id: 1kwaB   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kwaB/nostruct-align/1kwaB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kwaB/nostruct-align/1kwaB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1kwaB/nostruct-align/1kwaB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10296/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.519531
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3minB
id: 3minB   alignment found: /projects/compbio/experiments/models.97/pdb/3m/3minB/nostruct-align/3minB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3m/3minB/nostruct-align/3minB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3m/3minB/nostruct-align/3minB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29816/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.497681
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cp2A
id: 1cp2A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cp2A/nostruct-align/1cp2A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cp2A/nostruct-align/1cp2A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cp2A/nostruct-align/1cp2A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2001/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.867554
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rss
id: 1rss   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rss/nostruct-align/1rss.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rss/nostruct-align/1rss.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rss/nostruct-align/1rss.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20697/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.774658
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1at0
id: 1at0   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1at0/nostruct-align/1at0.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1at0/nostruct-align/1at0.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1at0/nostruct-align/1at0.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30016/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.283569
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ryp1
id: 1ryp1   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1ryp1/nostruct-align/1ryp1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1ryp1/nostruct-align/1ryp1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1ryp1/nostruct-align/1ryp1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14195/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.605591
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ois
id: 1ois   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1ois/nostruct-align/1ois.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1ois/nostruct-align/1ois.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1ois/nostruct-align/1ois.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32759/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.795654
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ospO
id: 1ospO   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1ospO/nostruct-align/1ospO.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1ospO/nostruct-align/1ospO.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1ospO/nostruct-align/1ospO.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30333/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.264648
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1alu
id: 1alu   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1alu/nostruct-align/1alu.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1alu/nostruct-align/1alu.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1alu/nostruct-align/1alu.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3693/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.604614
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1skz
id: 1skz   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1skz/nostruct-align/1skz.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1skz/nostruct-align/1skz.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1skz/nostruct-align/1skz.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14812/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.968506
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ryp2
id: 1ryp2   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1ryp2/nostruct-align/1ryp2.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1ryp2/nostruct-align/1ryp2.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1ryp2/nostruct-align/1ryp2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-791/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.667603
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gr2A
id: 1gr2A   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gr2A/nostruct-align/1gr2A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gr2A/nostruct-align/1gr2A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gr2A/nostruct-align/1gr2A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30520/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.822632
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1stmA
id: 1stmA   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1stmA/nostruct-align/1stmA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1stmA/nostruct-align/1stmA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1stmA/nostruct-align/1stmA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31488/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.680542
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rypF
id: 1rypF   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rypF/nostruct-align/1rypF.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rypF/nostruct-align/1rypF.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rypF/nostruct-align/1rypF.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7924/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.609619
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1buoA
id: 1buoA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1buoA/nostruct-align/1buoA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1buoA/nostruct-align/1buoA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1buoA/nostruct-align/1buoA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19655/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.795532
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ad2
id: 1ad2   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ad2/nostruct-align/1ad2.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ad2/nostruct-align/1ad2.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ad2/nostruct-align/1ad2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7132/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.924683
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mai
id: 1mai   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mai/nostruct-align/1mai.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mai/nostruct-align/1mai.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mai/nostruct-align/1mai.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32216/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.583496
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dfx
id: 1dfx   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dfx/nostruct-align/1dfx.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dfx/nostruct-align/1dfx.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dfx/nostruct-align/1dfx.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32331/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.764648
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a8h
id: 1a8h   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8h/nostruct-align/1a8h.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8h/nostruct-align/1a8h.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a8h/nostruct-align/1a8h.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22246/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.622681
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qa7B
id: 1qa7B   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qa7B/nostruct-align/1qa7B.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qa7B/nostruct-align/1qa7B.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qa7B/nostruct-align/1qa7B.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-16231/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.788574
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gotB
id: 1gotB   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gotB/nostruct-align/1gotB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gotB/nostruct-align/1gotB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gotB/nostruct-align/1gotB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14355/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.405640
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1clc
id: 1clc   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1clc/nostruct-align/1clc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1clc/nostruct-align/1clc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1clc/nostruct-align/1clc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3775/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.562622
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2hddA
id: 2hddA   alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hddA/nostruct-align/2hddA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hddA/nostruct-align/2hddA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2h/2hddA/nostruct-align/2hddA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18604/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.584595
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2sqcA
id: 2sqcA   alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sqcA/nostruct-align/2sqcA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sqcA/nostruct-align/2sqcA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2s/2sqcA/nostruct-align/2sqcA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31486/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.231567
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1iakA
id: 1iakA   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iakA/nostruct-align/1iakA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iakA/nostruct-align/1iakA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1iakA/nostruct-align/1iakA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29981/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.693604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vpsB
id: 1vpsB   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vpsB/nostruct-align/1vpsB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vpsB/nostruct-align/1vpsB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vpsB/nostruct-align/1vpsB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2052/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.009521
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sltB
id: 1sltB   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sltB/nostruct-align/1sltB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sltB/nostruct-align/1sltB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sltB/nostruct-align/1sltB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15058/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.387573
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1amuA
id: 1amuA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amuA/nostruct-align/1amuA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amuA/nostruct-align/1amuA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1amuA/nostruct-align/1amuA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19278/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.155640
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1idk
id: 1idk   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1idk/nostruct-align/1idk.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1idk/nostruct-align/1idk.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1idk/nostruct-align/1idk.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3581/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.828613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fit
id: 1fit   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fit/nostruct-align/1fit.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fit/nostruct-align/1fit.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fit/nostruct-align/1fit.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10639/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.423584
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bg7
id: 1bg7   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bg7/nostruct-align/1bg7.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bg7/nostruct-align/1bg7.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bg7/nostruct-align/1bg7.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16054/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.266602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1guxB
id: 1guxB   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1guxB/nostruct-align/1guxB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1guxB/nostruct-align/1guxB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1guxB/nostruct-align/1guxB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7552/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.811646
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ayfB
id: 1ayfB   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ayfB/nostruct-align/1ayfB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ayfB/nostruct-align/1ayfB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ayfB/nostruct-align/1ayfB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23654/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.873535
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1onrA
id: 1onrA   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1onrA/nostruct-align/1onrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1onrA/nostruct-align/1onrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1onrA/nostruct-align/1onrA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11628/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.204590
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hsbA
id: 1hsbA   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hsbA/nostruct-align/1hsbA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hsbA/nostruct-align/1hsbA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hsbA/nostruct-align/1hsbA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27912/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.102539
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 8prkB
id: 8prkB   alignment found: /projects/compbio/experiments/models.97/pdb/8p/8prkB/nostruct-align/8prkB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/8p/8prkB/nostruct-align/8prkB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/8p/8prkB/nostruct-align/8prkB.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-28024/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.316528
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qfoC
id: 1qfoC   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qfoC/nostruct-align/1qfoC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qfoC/nostruct-align/1qfoC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qfoC/nostruct-align/1qfoC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5976/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.343628
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1m6pA
id: 1m6pA   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1m6pA/nostruct-align/1m6pA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1m6pA/nostruct-align/1m6pA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1m6pA/nostruct-align/1m6pA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24544/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.150635
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3bamB
id: 3bamB   alignment found: /projects/compbio/experiments/models.97/pdb/3b/3bamB/nostruct-align/3bamB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3b/3bamB/nostruct-align/3bamB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3b/3bamB/nostruct-align/3bamB.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-13192/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.432495
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a73A
id: 1a73A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a73A/nostruct-align/1a73A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a73A/nostruct-align/1a73A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a73A/nostruct-align/1a73A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8775/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.690552
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3proD
id: 3proD   alignment found: /projects/compbio/experiments/models.97/pdb/3p/3proD/nostruct-align/3proD.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3proD/nostruct-align/3proD.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3p/3proD/nostruct-align/3proD.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26461/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.764648
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ak0
id: 1ak0   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ak0/nostruct-align/1ak0.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ak0/nostruct-align/1ak0.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ak0/nostruct-align/1ak0.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11435/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.298584
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1v39
id: 1v39   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1v39/nostruct-align/1v39.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1v39/nostruct-align/1v39.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1v39/nostruct-align/1v39.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12611/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.474609
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rkd
id: 1rkd   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rkd/nostruct-align/1rkd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rkd/nostruct-align/1rkd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rkd/nostruct-align/1rkd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19567/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.860596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1uxy
id: 1uxy   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uxy/nostruct-align/1uxy.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uxy/nostruct-align/1uxy.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1uxy/nostruct-align/1uxy.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26754/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.059570
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cczA
id: 1cczA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cczA/nostruct-align/1cczA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cczA/nostruct-align/1cczA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cczA/nostruct-align/1cczA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1782/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.218628
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ytbA
id: 1ytbA   alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ytbA/nostruct-align/1ytbA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ytbA/nostruct-align/1ytbA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1y/1ytbA/nostruct-align/1ytbA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31885/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.615601
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nfn
id: 1nfn   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nfn/nostruct-align/1nfn.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nfn/nostruct-align/1nfn.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nfn/nostruct-align/1nfn.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21806/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.225586
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gdoB
id: 1gdoB   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gdoB/nostruct-align/1gdoB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gdoB/nostruct-align/1gdoB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gdoB/nostruct-align/1gdoB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25042/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.410645
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bg2
id: 1bg2   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bg2/nostruct-align/1bg2.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bg2/nostruct-align/1bg2.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bg2/nostruct-align/1bg2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30827/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.496704
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2vhbB
id: 2vhbB   alignment found: /projects/compbio/experiments/models.97/pdb/2v/2vhbB/nostruct-align/2vhbB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2v/2vhbB/nostruct-align/2vhbB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2v/2vhbB/nostruct-align/2vhbB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15693/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.036621
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2sli
id: 2sli   alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sli/nostruct-align/2sli.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sli/nostruct-align/2sli.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2s/2sli/nostruct-align/2sli.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21543/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -19.680664
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bdmB
id: 1bdmB   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bdmB/nostruct-align/1bdmB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bdmB/nostruct-align/1bdmB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bdmB/nostruct-align/1bdmB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4950/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.097656
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tvxB
id: 1tvxB   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tvxB/nostruct-align/1tvxB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tvxB/nostruct-align/1tvxB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tvxB/nostruct-align/1tvxB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23752/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.161499
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bkb
id: 1bkb   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkb/nostruct-align/1bkb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkb/nostruct-align/1bkb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bkb/nostruct-align/1bkb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20659/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.282593
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aqzB
id: 1aqzB   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aqzB/nostruct-align/1aqzB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aqzB/nostruct-align/1aqzB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aqzB/nostruct-align/1aqzB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6293/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.186646
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tfe
id: 1tfe   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tfe/nostruct-align/1tfe.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tfe/nostruct-align/1tfe.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tfe/nostruct-align/1tfe.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14981/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.228638
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3htsB
id: 3htsB   alignment found: /projects/compbio/experiments/models.97/pdb/3h/3htsB/nostruct-align/3htsB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3h/3htsB/nostruct-align/3htsB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3h/3htsB/nostruct-align/3htsB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19443/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.601562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1behA
id: 1behA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1behA/nostruct-align/1behA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1behA/nostruct-align/1behA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1behA/nostruct-align/1behA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31126/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.372559
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a2zA
id: 1a2zA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a2zA/nostruct-align/1a2zA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a2zA/nostruct-align/1a2zA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a2zA/nostruct-align/1a2zA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9210/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.326538
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mjhB
id: 1mjhB   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mjhB/nostruct-align/1mjhB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mjhB/nostruct-align/1mjhB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mjhB/nostruct-align/1mjhB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26334/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.103516
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1azo
id: 1azo   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1azo/nostruct-align/1azo.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1azo/nostruct-align/1azo.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1azo/nostruct-align/1azo.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19677/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.950684
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fltY
id: 1fltY   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fltY/nostruct-align/1fltY.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fltY/nostruct-align/1fltY.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fltY/nostruct-align/1fltY.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26548/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.589600
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aohB
id: 1aohB   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aohB/nostruct-align/1aohB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aohB/nostruct-align/1aohB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aohB/nostruct-align/1aohB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21992/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.252563
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ahjC
id: 2ahjC   alignment found: /projects/compbio/experiments/models.97/pdb/2a/2ahjC/nostruct-align/2ahjC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2ahjC/nostruct-align/2ahjC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2a/2ahjC/nostruct-align/2ahjC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4345/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.717651
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2msbB
id: 2msbB   alignment found: /projects/compbio/experiments/models.97/pdb/2m/2msbB/nostruct-align/2msbB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2msbB/nostruct-align/2msbB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2m/2msbB/nostruct-align/2msbB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26152/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.115601
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1xikA
id: 1xikA   alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xikA/nostruct-align/1xikA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xikA/nostruct-align/1xikA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1x/1xikA/nostruct-align/1xikA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13618/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.018677
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ido
id: 1ido   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ido/nostruct-align/1ido.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ido/nostruct-align/1ido.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1ido/nostruct-align/1ido.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15644/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.356567
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ay7B
id: 1ay7B   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ay7B/nostruct-align/1ay7B.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ay7B/nostruct-align/1ay7B.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ay7B/nostruct-align/1ay7B.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5895/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.450562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2bc2B
id: 2bc2B   alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bc2B/nostruct-align/2bc2B.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bc2B/nostruct-align/2bc2B.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2b/2bc2B/nostruct-align/2bc2B.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3497/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.487671
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dhn
id: 1dhn   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dhn/nostruct-align/1dhn.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dhn/nostruct-align/1dhn.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dhn/nostruct-align/1dhn.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25875/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.812622
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2hmzA
id: 2hmzA   alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hmzA/nostruct-align/2hmzA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hmzA/nostruct-align/2hmzA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2h/2hmzA/nostruct-align/2hmzA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8189/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.598633
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2hft
id: 2hft   alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hft/nostruct-align/2hft.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hft/nostruct-align/2hft.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2h/2hft/nostruct-align/2hft.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4304/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.702637
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1xwl
id: 1xwl   alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xwl/nostruct-align/1xwl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xwl/nostruct-align/1xwl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1x/1xwl/nostruct-align/1xwl.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13314/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.026489
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ubpA
id: 1ubpA   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1ubpA/nostruct-align/1ubpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1ubpA/nostruct-align/1ubpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1ubpA/nostruct-align/1ubpA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-82/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.770630
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ubpB
id: 1ubpB   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1ubpB/nostruct-align/1ubpB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1ubpB/nostruct-align/1ubpB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1ubpB/nostruct-align/1ubpB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24478/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.814575
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1erv
id: 1erv   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1erv/nostruct-align/1erv.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1erv/nostruct-align/1erv.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1erv/nostruct-align/1erv.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27013/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.085693
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1phnB
id: 1phnB   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1phnB/nostruct-align/1phnB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1phnB/nostruct-align/1phnB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1phnB/nostruct-align/1phnB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11002/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.809570
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1btkB
id: 1btkB   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1btkB/nostruct-align/1btkB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1btkB/nostruct-align/1btkB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1btkB/nostruct-align/1btkB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17925/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.809570
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bd0A
id: 1bd0A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bd0A/nostruct-align/1bd0A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bd0A/nostruct-align/1bd0A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bd0A/nostruct-align/1bd0A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7011/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.710571
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1azpA
id: 1azpA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1azpA/nostruct-align/1azpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1azpA/nostruct-align/1azpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1azpA/nostruct-align/1azpA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25322/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.939697
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 8rucI
id: 8rucI   alignment found: /projects/compbio/experiments/models.97/pdb/8r/8rucI/nostruct-align/8rucI.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/8r/8rucI/nostruct-align/8rucI.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/8r/8rucI/nostruct-align/8rucI.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15852/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.312622
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nddD
id: 1nddD   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nddD/nostruct-align/1nddD.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nddD/nostruct-align/1nddD.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nddD/nostruct-align/1nddD.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-115/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.536621
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gvp
id: 1gvp   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gvp/nostruct-align/1gvp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gvp/nostruct-align/1gvp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gvp/nostruct-align/1gvp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8180/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.110596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ubpC
id: 1ubpC   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1ubpC/nostruct-align/1ubpC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1ubpC/nostruct-align/1ubpC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1ubpC/nostruct-align/1ubpC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22502/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.531616
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dpsD
id: 1dpsD   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dpsD/nostruct-align/1dpsD.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dpsD/nostruct-align/1dpsD.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dpsD/nostruct-align/1dpsD.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4161/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.890625
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dad
id: 1dad   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dad/nostruct-align/1dad.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dad/nostruct-align/1dad.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dad/nostruct-align/1dad.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25133/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.446655
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b3aA
id: 1b3aA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3aA/nostruct-align/1b3aA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3aA/nostruct-align/1b3aA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b3aA/nostruct-align/1b3aA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27017/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.111572
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aquA
id: 1aquA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aquA/nostruct-align/1aquA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aquA/nostruct-align/1aquA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aquA/nostruct-align/1aquA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26768/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.923584
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hfeS
id: 1hfeS   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hfeS/nostruct-align/1hfeS.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hfeS/nostruct-align/1hfeS.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hfeS/nostruct-align/1hfeS.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11502/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.236694
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1wer
id: 1wer   alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wer/nostruct-align/1wer.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wer/nostruct-align/1wer.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1w/1wer/nostruct-align/1wer.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12121/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.862549
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3pviA
id: 3pviA   alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pviA/nostruct-align/3pviA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pviA/nostruct-align/3pviA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3p/3pviA/nostruct-align/3pviA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15150/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.383545
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bxrA
id: 1bxrA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxrA/nostruct-align/1bxrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxrA/nostruct-align/1bxrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bxrA/nostruct-align/1bxrA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10700/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.434692
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ugiA
id: 1ugiA   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1ugiA/nostruct-align/1ugiA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1ugiA/nostruct-align/1ugiA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1ugiA/nostruct-align/1ugiA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12540/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.495605
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1akz
id: 1akz   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1akz/nostruct-align/1akz.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1akz/nostruct-align/1akz.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1akz/nostruct-align/1akz.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19232/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.811523
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a62
id: 1a62   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a62/nostruct-align/1a62.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a62/nostruct-align/1a62.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a62/nostruct-align/1a62.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30888/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.634521
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1t1dA
id: 1t1dA   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1t1dA/nostruct-align/1t1dA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1t1dA/nostruct-align/1t1dA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1t1dA/nostruct-align/1t1dA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30182/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.919678
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lit
id: 1lit   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lit/nostruct-align/1lit.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lit/nostruct-align/1lit.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lit/nostruct-align/1lit.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-29011/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.514648
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1kpf
id: 1kpf   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kpf/nostruct-align/1kpf.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kpf/nostruct-align/1kpf.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1kpf/nostruct-align/1kpf.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17267/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.084595
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hta
id: 1hta   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hta/nostruct-align/1hta.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hta/nostruct-align/1hta.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hta/nostruct-align/1hta.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21404/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.997559
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1awsA
id: 1awsA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1awsA/nostruct-align/1awsA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1awsA/nostruct-align/1awsA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1awsA/nostruct-align/1awsA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5925/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.204590
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2bce
id: 2bce   alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bce/nostruct-align/2bce.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bce/nostruct-align/2bce.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2b/2bce/nostruct-align/2bce.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8715/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.090576
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cipA
id: 1cipA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cipA/nostruct-align/1cipA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cipA/nostruct-align/1cipA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cipA/nostruct-align/1cipA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32633/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.028564
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a4iB
id: 1a4iB   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a4iB/nostruct-align/1a4iB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a4iB/nostruct-align/1a4iB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a4iB/nostruct-align/1a4iB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10530/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.436646
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2arcB
id: 2arcB   alignment found: /projects/compbio/experiments/models.97/pdb/2a/2arcB/nostruct-align/2arcB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2arcB/nostruct-align/2arcB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2a/2arcB/nostruct-align/2arcB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8157/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.509644
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ah7
id: 1ah7   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ah7/nostruct-align/1ah7.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ah7/nostruct-align/1ah7.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ah7/nostruct-align/1ah7.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21194/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.500610
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2sns
id: 2sns   alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sns/nostruct-align/2sns.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sns/nostruct-align/2sns.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2s/2sns/nostruct-align/2sns.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25747/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.373657
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1benB
id: 1benB   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1benB/nostruct-align/1benB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1benB/nostruct-align/1benB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1benB/nostruct-align/1benB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20303/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.453613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ppt
id: 1ppt   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1ppt/nostruct-align/1ppt.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1ppt/nostruct-align/1ppt.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1ppt/nostruct-align/1ppt.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13338/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.235596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nxb
id: 1nxb   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nxb/nostruct-align/1nxb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nxb/nostruct-align/1nxb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nxb/nostruct-align/1nxb.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11968/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.751587
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ecd
id: 1ecd   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ecd/nostruct-align/1ecd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ecd/nostruct-align/1ecd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1ecd/nostruct-align/1ecd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20542/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.350586
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pinA
id: 1pinA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pinA/nostruct-align/1pinA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pinA/nostruct-align/1pinA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pinA/nostruct-align/1pinA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21617/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.714600
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a2yB
id: 1a2yB   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a2yB/nostruct-align/1a2yB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a2yB/nostruct-align/1a2yB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a2yB/nostruct-align/1a2yB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29453/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.989624
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bx7
id: 1bx7   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bx7/nostruct-align/1bx7.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bx7/nostruct-align/1bx7.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bx7/nostruct-align/1bx7.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20301/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.677612
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cbn
id: 1cbn   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cbn/nostruct-align/1cbn.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cbn/nostruct-align/1cbn.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cbn/nostruct-align/1cbn.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19424/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.420654
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b93B
id: 1b93B   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b93B/nostruct-align/1b93B.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b93B/nostruct-align/1b93B.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b93B/nostruct-align/1b93B.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23627/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.614624
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1agqD
id: 1agqD   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agqD/nostruct-align/1agqD.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agqD/nostruct-align/1agqD.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1agqD/nostruct-align/1agqD.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3493/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.563599
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1h2aS
id: 1h2aS   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1h2aS/nostruct-align/1h2aS.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1h2aS/nostruct-align/1h2aS.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1h2aS/nostruct-align/1h2aS.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8370/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.153687
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1uch
id: 1uch   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uch/nostruct-align/1uch.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uch/nostruct-align/1uch.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1uch/nostruct-align/1uch.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29031/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.677612
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a3aC
id: 1a3aC   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a3aC/nostruct-align/1a3aC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a3aC/nostruct-align/1a3aC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a3aC/nostruct-align/1a3aC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11505/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.002563
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a6m
id: 1a6m   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6m/nostruct-align/1a6m.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6m/nostruct-align/1a6m.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a6m/nostruct-align/1a6m.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-453/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.534546
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1jetA
id: 1jetA   alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jetA/nostruct-align/1jetA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jetA/nostruct-align/1jetA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1j/1jetA/nostruct-align/1jetA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7803/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.923584
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1phg
id: 1phg   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1phg/nostruct-align/1phg.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1phg/nostruct-align/1phg.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1phg/nostruct-align/1phg.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8241/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.404663
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1atzB
id: 1atzB   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1atzB/nostruct-align/1atzB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1atzB/nostruct-align/1atzB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1atzB/nostruct-align/1atzB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15897/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.814575
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2gar
id: 2gar   alignment found: /projects/compbio/experiments/models.97/pdb/2g/2gar/nostruct-align/2gar.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2g/2gar/nostruct-align/2gar.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2g/2gar/nostruct-align/2gar.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25556/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.074585
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1yveJ
id: 1yveJ   alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yveJ/nostruct-align/1yveJ.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yveJ/nostruct-align/1yveJ.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1y/1yveJ/nostruct-align/1yveJ.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19543/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.833618
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 6mhtA
id: 6mhtA   alignment found: /projects/compbio/experiments/models.97/pdb/6m/6mhtA/nostruct-align/6mhtA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/6m/6mhtA/nostruct-align/6mhtA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/6m/6mhtA/nostruct-align/6mhtA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1225/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.367676
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1xnaA
id: 1xnaA   alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xnaA/nostruct-align/1xnaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xnaA/nostruct-align/1xnaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1x/1xnaA/nostruct-align/1xnaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25975/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.201660
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a1z
id: 1a1z   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a1z/nostruct-align/1a1z.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a1z/nostruct-align/1a1z.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a1z/nostruct-align/1a1z.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1654/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.131592
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a32
id: 1a32   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a32/nostruct-align/1a32.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a32/nostruct-align/1a32.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a32/nostruct-align/1a32.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21858/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.998535
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a15A
id: 1a15A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a15A/nostruct-align/1a15A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a15A/nostruct-align/1a15A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a15A/nostruct-align/1a15A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23840/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.114624
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a2xB
id: 1a2xB   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a2xB/nostruct-align/1a2xB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a2xB/nostruct-align/1a2xB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a2xB/nostruct-align/1a2xB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31532/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.529663
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a41
id: 1a41   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a41/nostruct-align/1a41.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a41/nostruct-align/1a41.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a41/nostruct-align/1a41.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22533/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.315552
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a02J
id: 1a02J   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a02J/nostruct-align/1a02J.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a02J/nostruct-align/1a02J.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a02J/nostruct-align/1a02J.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17984/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.159546
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a3k
id: 1a3k   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a3k/nostruct-align/1a3k.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a3k/nostruct-align/1a3k.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a3k/nostruct-align/1a3k.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13284/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.393555
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a5r
id: 1a5r   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a5r/nostruct-align/1a5r.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a5r/nostruct-align/1a5r.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a5r/nostruct-align/1a5r.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2156/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.052612
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a1tA
id: 1a1tA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a1tA/nostruct-align/1a1tA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a1tA/nostruct-align/1a1tA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a1tA/nostruct-align/1a1tA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18527/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.626587
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a0tP
id: 1a0tP   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a0tP/nostruct-align/1a0tP.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a0tP/nostruct-align/1a0tP.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a0tP/nostruct-align/1a0tP.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24237/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.121704
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a0cA
id: 1a0cA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a0cA/nostruct-align/1a0cA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a0cA/nostruct-align/1a0cA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a0cA/nostruct-align/1a0cA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2664/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.187622
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a6bB
id: 1a6bB   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6bB/nostruct-align/1a6bB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6bB/nostruct-align/1a6bB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a6bB/nostruct-align/1a6bB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1882/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.145630
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a0hA
id: 1a0hA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a0hA/nostruct-align/1a0hA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a0hA/nostruct-align/1a0hA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a0hA/nostruct-align/1a0hA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file ./tmp/tmp-build-weighted-model-alpha-25984/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.000610
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a04A
id: 1a04A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a04A/nostruct-align/1a04A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a04A/nostruct-align/1a04A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a04A/nostruct-align/1a04A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23515/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.255615
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a17
id: 1a17   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a17/nostruct-align/1a17.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a17/nostruct-align/1a17.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a17/nostruct-align/1a17.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10642/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.748657
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a2vA
id: 1a2vA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a2vA/nostruct-align/1a2vA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a2vA/nostruct-align/1a2vA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a2vA/nostruct-align/1a2vA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11763/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.118652
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a6s
id: 1a6s   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6s/nostruct-align/1a6s.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6s/nostruct-align/1a6s.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a6s/nostruct-align/1a6s.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25271/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.706543
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a6jA
id: 1a6jA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6jA/nostruct-align/1a6jA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6jA/nostruct-align/1a6jA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a6jA/nostruct-align/1a6jA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2793/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.123535
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 16vpA
id: 16vpA   alignment found: /projects/compbio/experiments/models.97/pdb/16/16vpA/nostruct-align/16vpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/16/16vpA/nostruct-align/16vpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/16/16vpA/nostruct-align/16vpA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2325/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.280518
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a79A
id: 1a79A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a79A/nostruct-align/1a79A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a79A/nostruct-align/1a79A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a79A/nostruct-align/1a79A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9566/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.911499
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a3qA
id: 1a3qA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a3qA/nostruct-align/1a3qA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a3qA/nostruct-align/1a3qA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a3qA/nostruct-align/1a3qA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23455/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.354614
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a02F
id: 1a02F   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a02F/nostruct-align/1a02F.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a02F/nostruct-align/1a02F.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a02F/nostruct-align/1a02F.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3689/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.305664
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a93B
id: 1a93B   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a93B/nostruct-align/1a93B.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a93B/nostruct-align/1a93B.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a93B/nostruct-align/1a93B.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16678/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.628662
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a9v
id: 1a9v   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a9v/nostruct-align/1a9v.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a9v/nostruct-align/1a9v.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a9v/nostruct-align/1a9v.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6491/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.152588
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a81A
id: 1a81A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a81A/nostruct-align/1a81A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a81A/nostruct-align/1a81A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a81A/nostruct-align/1a81A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9636/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.460571
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a87
id: 1a87   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a87/nostruct-align/1a87.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a87/nostruct-align/1a87.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a87/nostruct-align/1a87.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11297/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.702637
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a4uA
id: 1a4uA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a4uA/nostruct-align/1a4uA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a4uA/nostruct-align/1a4uA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a4uA/nostruct-align/1a4uA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29376/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.895508
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a93A
id: 1a93A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a93A/nostruct-align/1a93A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a93A/nostruct-align/1a93A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a93A/nostruct-align/1a93A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6558/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.389648
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aa7A
id: 1aa7A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aa7A/nostruct-align/1aa7A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aa7A/nostruct-align/1aa7A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aa7A/nostruct-align/1aa7A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18483/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.267578
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a91
id: 1a91   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a91/nostruct-align/1a91.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a91/nostruct-align/1a91.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a91/nostruct-align/1a91.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29150/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.664673
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a8rA
id: 1a8rA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8rA/nostruct-align/1a8rA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8rA/nostruct-align/1a8rA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a8rA/nostruct-align/1a8rA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14474/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.564575
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a8o
id: 1a8o   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a8o/nostruct-align/1a8o.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a8o/nostruct-align/1a8o.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a8o/nostruct-align/1a8o.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27705/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.292603
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a5t
id: 1a5t   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a5t/nostruct-align/1a5t.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a5t/nostruct-align/1a5t.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a5t/nostruct-align/1a5t.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24553/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.098633
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a9nA
id: 1a9nA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a9nA/nostruct-align/1a9nA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a9nA/nostruct-align/1a9nA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a9nA/nostruct-align/1a9nA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15622/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.735596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1abz
id: 1abz   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1abz/nostruct-align/1abz.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1abz/nostruct-align/1abz.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1abz/nostruct-align/1abz.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8008/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.230591
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1adx
id: 1adx   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1adx/nostruct-align/1adx.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1adx/nostruct-align/1adx.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1adx/nostruct-align/1adx.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31601/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.457520
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a6dA
id: 1a6dA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6dA/nostruct-align/1a6dA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6dA/nostruct-align/1a6dA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a6dA/nostruct-align/1a6dA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25869/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.003540
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1afoA
id: 1afoA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1afoA/nostruct-align/1afoA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1afoA/nostruct-align/1afoA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1afoA/nostruct-align/1afoA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32401/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.999634
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a76
id: 1a76   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a76/nostruct-align/1a76.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a76/nostruct-align/1a76.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a76/nostruct-align/1a76.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32683/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.360596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a92A
id: 1a92A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a92A/nostruct-align/1a92A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a92A/nostruct-align/1a92A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a92A/nostruct-align/1a92A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13749/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.275635
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1adjA
id: 1adjA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1adjA/nostruct-align/1adjA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1adjA/nostruct-align/1adjA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1adjA/nostruct-align/1adjA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18633/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.356567
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ag7
id: 1ag7   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ag7/nostruct-align/1ag7.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ag7/nostruct-align/1ag7.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ag7/nostruct-align/1ag7.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17827/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.557617
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1agqA
id: 1agqA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agqA/nostruct-align/1agqA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agqA/nostruct-align/1agqA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1agqA/nostruct-align/1agqA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1635/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.034668
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a65A
id: 1a65A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a65A/nostruct-align/1a65A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a65A/nostruct-align/1a65A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a65A/nostruct-align/1a65A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30805/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.946655
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ahsA
id: 1ahsA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ahsA/nostruct-align/1ahsA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ahsA/nostruct-align/1ahsA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ahsA/nostruct-align/1ahsA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1130/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.149536
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ahl
id: 1ahl   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ahl/nostruct-align/1ahl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ahl/nostruct-align/1ahl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ahl/nostruct-align/1ahl.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7067/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.454590
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1agrE
id: 1agrE   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agrE/nostruct-align/1agrE.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agrE/nostruct-align/1agrE.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1agrE/nostruct-align/1agrE.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30108/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.056519
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1abwA
id: 1abwA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1abwA/nostruct-align/1abwA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1abwA/nostruct-align/1abwA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1abwA/nostruct-align/1abwA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15697/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.396606
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aiw
id: 1aiw   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aiw/nostruct-align/1aiw.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aiw/nostruct-align/1aiw.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aiw/nostruct-align/1aiw.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21141/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.265625
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aisB
id: 1aisB   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aisB/nostruct-align/1aisB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aisB/nostruct-align/1aisB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aisB/nostruct-align/1aisB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6754/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.220581
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ajj
id: 1ajj   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ajj/nostruct-align/1ajj.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ajj/nostruct-align/1ajj.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ajj/nostruct-align/1ajj.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10590/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.175537
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aayA
id: 1aayA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aayA/nostruct-align/1aayA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aayA/nostruct-align/1aayA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aayA/nostruct-align/1aayA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7447/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.104614
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ak7
id: 1ak7   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ak7/nostruct-align/1ak7.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ak7/nostruct-align/1ak7.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ak7/nostruct-align/1ak7.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29940/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.931641
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ad3A
id: 1ad3A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ad3A/nostruct-align/1ad3A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ad3A/nostruct-align/1ad3A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ad3A/nostruct-align/1ad3A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17678/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.414551
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ajqA
id: 1ajqA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ajqA/nostruct-align/1ajqA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ajqA/nostruct-align/1ajqA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ajqA/nostruct-align/1ajqA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24991/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.591553
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1agdB
id: 1agdB   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agdB/nostruct-align/1agdB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agdB/nostruct-align/1agdB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1agdB/nostruct-align/1agdB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16692/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.289673
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aihA
id: 1aihA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aihA/nostruct-align/1aihA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aihA/nostruct-align/1aihA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aihA/nostruct-align/1aihA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28554/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.332642
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a6cA
id: 1a6cA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6cA/nostruct-align/1a6cA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6cA/nostruct-align/1a6cA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a6cA/nostruct-align/1a6cA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8971/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.708618
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1am2
id: 1am2   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1am2/nostruct-align/1am2.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1am2/nostruct-align/1am2.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1am2/nostruct-align/1am2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20009/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.716553
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1akhA
id: 1akhA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1akhA/nostruct-align/1akhA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1akhA/nostruct-align/1akhA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1akhA/nostruct-align/1akhA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21547/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.278564
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aly
id: 1aly   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aly/nostruct-align/1aly.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aly/nostruct-align/1aly.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aly/nostruct-align/1aly.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28274/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.740601
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a36A
id: 1a36A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a36A/nostruct-align/1a36A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a36A/nostruct-align/1a36A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a36A/nostruct-align/1a36A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16902/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.361572
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1am9A
id: 1am9A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1am9A/nostruct-align/1am9A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1am9A/nostruct-align/1am9A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1am9A/nostruct-align/1am9A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27389/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.526489
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aml
id: 1aml   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aml/nostruct-align/1aml.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aml/nostruct-align/1aml.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aml/nostruct-align/1aml.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27069/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.870605
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1air
id: 1air   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1air/nostruct-align/1air.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1air/nostruct-align/1air.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1air/nostruct-align/1air.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-937/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.785645
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1an4A
id: 1an4A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1an4A/nostruct-align/1an4A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1an4A/nostruct-align/1an4A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1an4A/nostruct-align/1an4A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11486/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.669556
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ahpA
id: 1ahpA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ahpA/nostruct-align/1ahpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ahpA/nostruct-align/1ahpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ahpA/nostruct-align/1ahpA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6445/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.796631
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ajqB
id: 1ajqB   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ajqB/nostruct-align/1ajqB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ajqB/nostruct-align/1ajqB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ajqB/nostruct-align/1ajqB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5688/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.205566
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aoiA
id: 1aoiA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoiA/nostruct-align/1aoiA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoiA/nostruct-align/1aoiA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aoiA/nostruct-align/1aoiA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21544/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.301636
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aoiB
id: 1aoiB   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoiB/nostruct-align/1aoiB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoiB/nostruct-align/1aoiB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aoiB/nostruct-align/1aoiB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14525/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.305542
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1akhB
id: 1akhB   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1akhB/nostruct-align/1akhB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1akhB/nostruct-align/1akhB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1akhB/nostruct-align/1akhB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27841/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.396606
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aoiD
id: 1aoiD   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoiD/nostruct-align/1aoiD.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoiD/nostruct-align/1aoiD.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aoiD/nostruct-align/1aoiD.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31992/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.524658
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aoiC
id: 1aoiC   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoiC/nostruct-align/1aoiC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoiC/nostruct-align/1aoiC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aoiC/nostruct-align/1aoiC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32287/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.846558
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1amk
id: 1amk   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amk/nostruct-align/1amk.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amk/nostruct-align/1amk.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1amk/nostruct-align/1amk.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13445/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.207642
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aq5A
id: 1aq5A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aq5A/nostruct-align/1aq5A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aq5A/nostruct-align/1aq5A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aq5A/nostruct-align/1aq5A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10169/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.044556
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aqt
id: 1aqt   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aqt/nostruct-align/1aqt.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aqt/nostruct-align/1aqt.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aqt/nostruct-align/1aqt.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25645/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.531616
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aqzA
id: 1aqzA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aqzA/nostruct-align/1aqzA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aqzA/nostruct-align/1aqzA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aqzA/nostruct-align/1aqzA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15067/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.185669
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1at3A
id: 1at3A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1at3A/nostruct-align/1at3A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1at3A/nostruct-align/1at3A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1at3A/nostruct-align/1at3A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24313/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.819580
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aoo
id: 1aoo   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoo/nostruct-align/1aoo.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoo/nostruct-align/1aoo.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aoo/nostruct-align/1aoo.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17788/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.866577
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1apq
id: 1apq   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1apq/nostruct-align/1apq.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1apq/nostruct-align/1apq.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1apq/nostruct-align/1apq.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32579/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.586670
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ac5
id: 1ac5   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ac5/nostruct-align/1ac5.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ac5/nostruct-align/1ac5.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ac5/nostruct-align/1ac5.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8618/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.911621
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ak5
id: 1ak5   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ak5/nostruct-align/1ak5.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ak5/nostruct-align/1ak5.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ak5/nostruct-align/1ak5.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14562/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.524658
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1amoA
id: 1amoA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amoA/nostruct-align/1amoA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amoA/nostruct-align/1amoA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1amoA/nostruct-align/1amoA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21411/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.486694
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ass
id: 1ass   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ass/nostruct-align/1ass.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ass/nostruct-align/1ass.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ass/nostruct-align/1ass.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16565/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.802612
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aub
id: 1aub   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aub/nostruct-align/1aub.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aub/nostruct-align/1aub.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aub/nostruct-align/1aub.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18190/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.615601
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aoa
id: 1aoa   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoa/nostruct-align/1aoa.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoa/nostruct-align/1aoa.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aoa/nostruct-align/1aoa.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19064/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.595581
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1auuA
id: 1auuA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auuA/nostruct-align/1auuA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auuA/nostruct-align/1auuA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1auuA/nostruct-align/1auuA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28964/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.054688
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1auoA
id: 1auoA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auoA/nostruct-align/1auoA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auoA/nostruct-align/1auoA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1auoA/nostruct-align/1auoA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22207/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.491577
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1auyA
id: 1auyA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auyA/nostruct-align/1auyA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auyA/nostruct-align/1auyA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1auyA/nostruct-align/1auyA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27990/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.984619
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aoxA
id: 1aoxA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aoxA/nostruct-align/1aoxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aoxA/nostruct-align/1aoxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aoxA/nostruct-align/1aoxA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13884/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.504517
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1arv
id: 1arv   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1arv/nostruct-align/1arv.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1arv/nostruct-align/1arv.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1arv/nostruct-align/1arv.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10937/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.818604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1avpA
id: 1avpA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avpA/nostruct-align/1avpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avpA/nostruct-align/1avpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1avpA/nostruct-align/1avpA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10151/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.033569
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1atiA
id: 1atiA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1atiA/nostruct-align/1atiA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1atiA/nostruct-align/1atiA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1atiA/nostruct-align/1atiA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8065/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.412598
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1avyB
id: 1avyB   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avyB/nostruct-align/1avyB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avyB/nostruct-align/1avyB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1avyB/nostruct-align/1avyB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16529/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.233643
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1avqA
id: 1avqA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avqA/nostruct-align/1avqA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avqA/nostruct-align/1avqA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1avqA/nostruct-align/1avqA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10185/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.314575
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1avoA
id: 1avoA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avoA/nostruct-align/1avoA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avoA/nostruct-align/1avoA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1avoA/nostruct-align/1avoA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-772/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.651611
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1avaC
id: 1avaC   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avaC/nostruct-align/1avaC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avaC/nostruct-align/1avaC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1avaC/nostruct-align/1avaC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7953/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.801636
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aw7A
id: 1aw7A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aw7A/nostruct-align/1aw7A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aw7A/nostruct-align/1aw7A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aw7A/nostruct-align/1aw7A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14902/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.022583
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aw8B
id: 1aw8B   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aw8B/nostruct-align/1aw8B.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aw8B/nostruct-align/1aw8B.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aw8B/nostruct-align/1aw8B.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32148/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.525635
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1av1A
id: 1av1A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1av1A/nostruct-align/1av1A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1av1A/nostruct-align/1av1A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1av1A/nostruct-align/1av1A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28599/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.567627
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1avyC
id: 1avyC   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avyC/nostruct-align/1avyC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avyC/nostruct-align/1avyC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1avyC/nostruct-align/1avyC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17579/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.552612
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1auiB
id: 1auiB   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auiB/nostruct-align/1auiB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auiB/nostruct-align/1auiB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1auiB/nostruct-align/1auiB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18755/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.868530
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aw0
id: 1aw0   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aw0/nostruct-align/1aw0.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aw0/nostruct-align/1aw0.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aw0/nostruct-align/1aw0.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25711/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.921631
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1awcA
id: 1awcA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1awcA/nostruct-align/1awcA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1awcA/nostruct-align/1awcA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1awcA/nostruct-align/1awcA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-130/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.368652
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1axh
id: 1axh   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1axh/nostruct-align/1axh.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1axh/nostruct-align/1axh.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1axh/nostruct-align/1axh.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7926/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.755615
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ayj
id: 1ayj   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1ayj/nostruct-align/1ayj.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1ayj/nostruct-align/1ayj.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1ayj/nostruct-align/1ayj.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5261/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.766602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1axj
id: 1axj   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1axj/nostruct-align/1axj.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1axj/nostruct-align/1axj.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1axj/nostruct-align/1axj.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27950/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.569580
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1auiA
id: 1auiA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auiA/nostruct-align/1auiA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auiA/nostruct-align/1auiA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1auiA/nostruct-align/1auiA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31186/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.831665
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1azh
id: 1azh   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1azh/nostruct-align/1azh.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1azh/nostruct-align/1azh.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1azh/nostruct-align/1azh.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4203/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.669556
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b20A
id: 1b20A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b20A/nostruct-align/1b20A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b20A/nostruct-align/1b20A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b20A/nostruct-align/1b20A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21837/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.297607
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1auwA
id: 1auwA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1auwA/nostruct-align/1auwA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1auwA/nostruct-align/1auwA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1auwA/nostruct-align/1auwA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27687/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.760620
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1au7A
id: 1au7A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1au7A/nostruct-align/1au7A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1au7A/nostruct-align/1au7A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1au7A/nostruct-align/1au7A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9876/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.595581
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1azsA
id: 1azsA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1azsA/nostruct-align/1azsA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1azsA/nostruct-align/1azsA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1azsA/nostruct-align/1azsA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20533/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.767578
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a6o
id: 1a6o   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6o/nostruct-align/1a6o.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6o/nostruct-align/1a6o.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a6o/nostruct-align/1a6o.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9696/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.613647
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aye
id: 1aye   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aye/nostruct-align/1aye.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aye/nostruct-align/1aye.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aye/nostruct-align/1aye.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12101/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.596558
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b35A
id: 1b35A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b35A/nostruct-align/1b35A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b35A/nostruct-align/1b35A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b35A/nostruct-align/1b35A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5398/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.405640
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b35D
id: 1b35D   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b35D/nostruct-align/1b35D.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b35D/nostruct-align/1b35D.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b35D/nostruct-align/1b35D.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11760/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.967651
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1az9
id: 1az9   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1az9/nostruct-align/1az9.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1az9/nostruct-align/1az9.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1az9/nostruct-align/1az9.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24022/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.840698
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aym1
id: 1aym1   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aym1/nostruct-align/1aym1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aym1/nostruct-align/1aym1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aym1/nostruct-align/1aym1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1179/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.155640
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aym3
id: 1aym3   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aym3/nostruct-align/1aym3.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aym3/nostruct-align/1aym3.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aym3/nostruct-align/1aym3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4505/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.124512
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b35B
id: 1b35B   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b35B/nostruct-align/1b35B.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b35B/nostruct-align/1b35B.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b35B/nostruct-align/1b35B.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10531/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.380615
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1avc
id: 1avc   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1avc/nostruct-align/1avc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1avc/nostruct-align/1avc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1avc/nostruct-align/1avc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18259/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.252686
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b3eA
id: 1b3eA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3eA/nostruct-align/1b3eA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3eA/nostruct-align/1b3eA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b3eA/nostruct-align/1b3eA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21094/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.429688
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b4aA
id: 1b4aA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4aA/nostruct-align/1b4aA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4aA/nostruct-align/1b4aA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b4aA/nostruct-align/1b4aA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20818/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.588623
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b4r
id: 1b4r   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4r/nostruct-align/1b4r.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4r/nostruct-align/1b4r.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b4r/nostruct-align/1b4r.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5455/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.486572
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b5l
id: 1b5l   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b5l/nostruct-align/1b5l.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b5l/nostruct-align/1b5l.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b5l/nostruct-align/1b5l.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31931/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.483643
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b66A
id: 1b66A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b66A/nostruct-align/1b66A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b66A/nostruct-align/1b66A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b66A/nostruct-align/1b66A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22944/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.200684
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b64
id: 1b64   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b64/nostruct-align/1b64.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b64/nostruct-align/1b64.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b64/nostruct-align/1b64.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19452/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.202637
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b4fA
id: 1b4fA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4fA/nostruct-align/1b4fA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4fA/nostruct-align/1b4fA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b4fA/nostruct-align/1b4fA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30767/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.734497
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1amj
id: 1amj   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amj/nostruct-align/1amj.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amj/nostruct-align/1amj.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1amj/nostruct-align/1amj.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16589/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.146606
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b4cA
id: 1b4cA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4cA/nostruct-align/1b4cA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4cA/nostruct-align/1b4cA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b4cA/nostruct-align/1b4cA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7750/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.777710
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b35C
id: 1b35C   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b35C/nostruct-align/1b35C.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b35C/nostruct-align/1b35C.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b35C/nostruct-align/1b35C.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27549/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.280640
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b79A
id: 1b79A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b79A/nostruct-align/1b79A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b79A/nostruct-align/1b79A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b79A/nostruct-align/1b79A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5642/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.270630
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b87A
id: 1b87A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b87A/nostruct-align/1b87A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b87A/nostruct-align/1b87A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b87A/nostruct-align/1b87A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21548/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.376587
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b6e
id: 1b6e   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b6e/nostruct-align/1b6e.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b6e/nostruct-align/1b6e.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b6e/nostruct-align/1b6e.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26499/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.702515
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1axkA
id: 1axkA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1axkA/nostruct-align/1axkA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1axkA/nostruct-align/1axkA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1axkA/nostruct-align/1axkA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26573/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -17.589600
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b89A
id: 1b89A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b89A/nostruct-align/1b89A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b89A/nostruct-align/1b89A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b89A/nostruct-align/1b89A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26341/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.852661
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b63A
id: 1b63A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b63A/nostruct-align/1b63A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b63A/nostruct-align/1b63A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b63A/nostruct-align/1b63A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3468/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.502563
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b8wA
id: 1b8wA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8wA/nostruct-align/1b8wA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8wA/nostruct-align/1b8wA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b8wA/nostruct-align/1b8wA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25272/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.514648
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aszB
id: 1aszB   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aszB/nostruct-align/1aszB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aszB/nostruct-align/1aszB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aszB/nostruct-align/1aszB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9904/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.718628
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b3uA
id: 1b3uA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3uA/nostruct-align/1b3uA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3uA/nostruct-align/1b3uA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b3uA/nostruct-align/1b3uA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10344/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.613647
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b8jA
id: 1b8jA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8jA/nostruct-align/1b8jA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8jA/nostruct-align/1b8jA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b8jA/nostruct-align/1b8jA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2209/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.539673
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b3rA
id: 1b3rA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3rA/nostruct-align/1b3rA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3rA/nostruct-align/1b3rA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b3rA/nostruct-align/1b3rA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1244/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.526611
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b8tA
id: 1b8tA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8tA/nostruct-align/1b8tA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8tA/nostruct-align/1b8tA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b8tA/nostruct-align/1b8tA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22085/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.794678
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b7gO
id: 1b7gO   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b7gO/nostruct-align/1b7gO.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b7gO/nostruct-align/1b7gO.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b7gO/nostruct-align/1b7gO.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12118/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.610596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b8xA
id: 1b8xA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8xA/nostruct-align/1b8xA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8xA/nostruct-align/1b8xA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b8xA/nostruct-align/1b8xA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21340/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.591553
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1agdA
id: 1agdA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1agdA/nostruct-align/1agdA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1agdA/nostruct-align/1agdA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1agdA/nostruct-align/1agdA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21188/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.996582
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aym2
id: 1aym2   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aym2/nostruct-align/1aym2.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aym2/nostruct-align/1aym2.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aym2/nostruct-align/1aym2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27801/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.732666
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b9pA
id: 1b9pA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9pA/nostruct-align/1b9pA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9pA/nostruct-align/1b9pA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b9pA/nostruct-align/1b9pA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10106/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.104614
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b9wA
id: 1b9wA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9wA/nostruct-align/1b9wA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9wA/nostruct-align/1b9wA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b9wA/nostruct-align/1b9wA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31444/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.066650
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b9yC
id: 1b9yC   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9yC/nostruct-align/1b9yC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9yC/nostruct-align/1b9yC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b9yC/nostruct-align/1b9yC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2062/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.801514
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ba4
id: 1ba4   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1ba4/nostruct-align/1ba4.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1ba4/nostruct-align/1ba4.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1ba4/nostruct-align/1ba4.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27578/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.870605
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b9uA
id: 1b9uA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9uA/nostruct-align/1b9uA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9uA/nostruct-align/1b9uA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b9uA/nostruct-align/1b9uA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27775/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.711670
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bba
id: 1bba   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bba/nostruct-align/1bba.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bba/nostruct-align/1bba.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bba/nostruct-align/1bba.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31342/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.214600
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bb9
id: 1bb9   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bb9/nostruct-align/1bb9.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bb9/nostruct-align/1bb9.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bb9/nostruct-align/1bb9.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30369/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.589600
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bax
id: 1bax   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bax/nostruct-align/1bax.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bax/nostruct-align/1bax.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bax/nostruct-align/1bax.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15887/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.477661
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ba6
id: 1ba6   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1ba6/nostruct-align/1ba6.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1ba6/nostruct-align/1ba6.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1ba6/nostruct-align/1ba6.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1589/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.906616
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bb1A
id: 1bb1A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bb1A/nostruct-align/1bb1A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bb1A/nostruct-align/1bb1A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bb1A/nostruct-align/1bb1A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24931/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.837646
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bbl
id: 1bbl   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bbl/nostruct-align/1bbl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bbl/nostruct-align/1bbl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bbl/nostruct-align/1bbl.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10759/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.726562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b72A
id: 1b72A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b72A/nostruct-align/1b72A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b72A/nostruct-align/1b72A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b72A/nostruct-align/1b72A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15458/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.000610
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b9dA
id: 1b9dA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9dA/nostruct-align/1b9dA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9dA/nostruct-align/1b9dA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b9dA/nostruct-align/1b9dA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-299/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.287598
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bbg
id: 1bbg   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bbg/nostruct-align/1bbg.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bbg/nostruct-align/1bbg.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bbg/nostruct-align/1bbg.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8935/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.868530
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bazA
id: 1bazA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bazA/nostruct-align/1bazA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bazA/nostruct-align/1bazA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bazA/nostruct-align/1bazA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32285/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.057617
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ba5
id: 1ba5   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1ba5/nostruct-align/1ba5.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1ba5/nostruct-align/1ba5.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1ba5/nostruct-align/1ba5.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7894/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.648682
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bco
id: 1bco   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bco/nostruct-align/1bco.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bco/nostruct-align/1bco.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bco/nostruct-align/1bco.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3181/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.909668
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bcpB
id: 1bcpB   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bcpB/nostruct-align/1bcpB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bcpB/nostruct-align/1bcpB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bcpB/nostruct-align/1bcpB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19663/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.204712
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bcpA
id: 1bcpA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bcpA/nostruct-align/1bcpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bcpA/nostruct-align/1bcpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bcpA/nostruct-align/1bcpA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16357/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.720581
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bdfA
id: 1bdfA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bdfA/nostruct-align/1bdfA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bdfA/nostruct-align/1bdfA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bdfA/nostruct-align/1bdfA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19824/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.751709
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bcpD
id: 1bcpD   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bcpD/nostruct-align/1bcpD.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bcpD/nostruct-align/1bcpD.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bcpD/nostruct-align/1bcpD.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6502/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.330566
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bbzA
id: 1bbzA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bbzA/nostruct-align/1bbzA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bbzA/nostruct-align/1bbzA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bbzA/nostruct-align/1bbzA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24277/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.973633
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1be3G
id: 1be3G   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3G/nostruct-align/1be3G.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3G/nostruct-align/1be3G.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1be3G/nostruct-align/1be3G.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7579/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.111694
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1be3H
id: 1be3H   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3H/nostruct-align/1be3H.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3H/nostruct-align/1be3H.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1be3H/nostruct-align/1be3H.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26313/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.537598
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b8fA
id: 1b8fA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8fA/nostruct-align/1b8fA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8fA/nostruct-align/1b8fA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b8fA/nostruct-align/1b8fA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5069/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.503662
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1be3J
id: 1be3J   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3J/nostruct-align/1be3J.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3J/nostruct-align/1be3J.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1be3J/nostruct-align/1be3J.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22852/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.993530
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1be3I
id: 1be3I   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3I/nostruct-align/1be3I.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3I/nostruct-align/1be3I.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1be3I/nostruct-align/1be3I.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7775/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.192627
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1be3F
id: 1be3F   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3F/nostruct-align/1be3F.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3F/nostruct-align/1be3F.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1be3F/nostruct-align/1be3F.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27541/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.546631
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b7fA
id: 1b7fA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b7fA/nostruct-align/1b7fA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b7fA/nostruct-align/1b7fA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b7fA/nostruct-align/1b7fA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18966/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.117554
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1be3A
id: 1be3A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3A/nostruct-align/1be3A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3A/nostruct-align/1be3A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1be3A/nostruct-align/1be3A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28692/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.356567
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bgk
id: 1bgk   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bgk/nostruct-align/1bgk.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bgk/nostruct-align/1bgk.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bgk/nostruct-align/1bgk.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10576/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.541504
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bev4
id: 1bev4   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bev4/nostruct-align/1bev4.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bev4/nostruct-align/1bev4.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bev4/nostruct-align/1bev4.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13775/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.218628
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bde
id: 1bde   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bde/nostruct-align/1bde.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bde/nostruct-align/1bde.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bde/nostruct-align/1bde.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11915/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.093628
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bh7
id: 1bh7   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bh7/nostruct-align/1bh7.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bh7/nostruct-align/1bh7.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bh7/nostruct-align/1bh7.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16932/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.181519
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bh9B
id: 1bh9B   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bh9B/nostruct-align/1bh9B.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bh9B/nostruct-align/1bh9B.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bh9B/nostruct-align/1bh9B.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27025/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.500610
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bhu
id: 1bhu   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhu/nostruct-align/1bhu.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhu/nostruct-align/1bhu.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bhu/nostruct-align/1bhu.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31976/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.849609
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bgyE
id: 1bgyE   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bgyE/nostruct-align/1bgyE.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bgyE/nostruct-align/1bgyE.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bgyE/nostruct-align/1bgyE.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15673/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.572632
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bh9A
id: 1bh9A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bh9A/nostruct-align/1bh9A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bh9A/nostruct-align/1bh9A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bh9A/nostruct-align/1bh9A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13567/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.421631
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b9zA
id: 1b9zA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9zA/nostruct-align/1b9zA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9zA/nostruct-align/1b9zA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b9zA/nostruct-align/1b9zA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31182/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -18.645630
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bi6H
id: 1bi6H   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bi6H/nostruct-align/1bi6H.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bi6H/nostruct-align/1bi6H.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bi6H/nostruct-align/1bi6H.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20135/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.703613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1befA
id: 1befA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1befA/nostruct-align/1befA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1befA/nostruct-align/1befA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1befA/nostruct-align/1befA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7086/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.609619
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bhi
id: 1bhi   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhi/nostruct-align/1bhi.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhi/nostruct-align/1bhi.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bhi/nostruct-align/1bhi.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7793/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.385620
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bi0
id: 1bi0   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bi0/nostruct-align/1bi0.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bi0/nostruct-align/1bi0.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bi0/nostruct-align/1bi0.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31958/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.381714
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bjaA
id: 1bjaA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bjaA/nostruct-align/1bjaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bjaA/nostruct-align/1bjaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bjaA/nostruct-align/1bjaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11489/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.348633
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bia
id: 1bia   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bia/nostruct-align/1bia.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bia/nostruct-align/1bia.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bia/nostruct-align/1bia.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25873/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.942505
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bix
id: 1bix   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bix/nostruct-align/1bix.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bix/nostruct-align/1bix.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bix/nostruct-align/1bix.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28863/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.768555
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bag
id: 1bag   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bag/nostruct-align/1bag.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bag/nostruct-align/1bag.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bag/nostruct-align/1bag.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12436/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.567627
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1be3B
id: 1be3B   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3B/nostruct-align/1be3B.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3B/nostruct-align/1be3B.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1be3B/nostruct-align/1be3B.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15216/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.216553
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bjx
id: 1bjx   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bjx/nostruct-align/1bjx.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bjx/nostruct-align/1bjx.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bjx/nostruct-align/1bjx.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5705/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.642700
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bj4A
id: 1bj4A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bj4A/nostruct-align/1bj4A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bj4A/nostruct-align/1bj4A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bj4A/nostruct-align/1bj4A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8047/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.802490
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bhgA
id: 1bhgA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bhgA/nostruct-align/1bhgA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bhgA/nostruct-align/1bhgA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bhgA/nostruct-align/1bhgA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12164/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.235596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bku
id: 1bku   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bku/nostruct-align/1bku.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bku/nostruct-align/1bku.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bku/nostruct-align/1bku.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9085/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.220581
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ble
id: 1ble   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1ble/nostruct-align/1ble.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1ble/nostruct-align/1ble.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1ble/nostruct-align/1ble.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15520/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.906616
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bl1
id: 1bl1   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bl1/nostruct-align/1bl1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bl1/nostruct-align/1bl1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bl1/nostruct-align/1bl1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20985/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.953613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bl8A
id: 1bl8A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bl8A/nostruct-align/1bl8A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bl8A/nostruct-align/1bl8A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bl8A/nostruct-align/1bl8A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26652/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.861572
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bm9A
id: 1bm9A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bm9A/nostruct-align/1bm9A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bm9A/nostruct-align/1bm9A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bm9A/nostruct-align/1bm9A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10622/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.628540
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bmlC
id: 1bmlC   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bmlC/nostruct-align/1bmlC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bmlC/nostruct-align/1bmlC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bmlC/nostruct-align/1bmlC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8469/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.502563
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bmy
id: 1bmy   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bmy/nostruct-align/1bmy.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bmy/nostruct-align/1bmy.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bmy/nostruct-align/1bmy.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11254/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.460571
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bmfG
id: 1bmfG   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bmfG/nostruct-align/1bmfG.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bmfG/nostruct-align/1bmfG.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bmfG/nostruct-align/1bmfG.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10640/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.237671
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bkcA
id: 1bkcA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bkcA/nostruct-align/1bkcA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bkcA/nostruct-align/1bkcA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bkcA/nostruct-align/1bkcA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23042/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.598633
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bmtA
id: 1bmtA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bmtA/nostruct-align/1bmtA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bmtA/nostruct-align/1bmtA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bmtA/nostruct-align/1bmtA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12434/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.128540
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ba1
id: 1ba1   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1ba1/nostruct-align/1ba1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1ba1/nostruct-align/1ba1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1ba1/nostruct-align/1ba1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18315/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.954590
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bm4
id: 1bm4   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bm4/nostruct-align/1bm4.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bm4/nostruct-align/1bm4.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bm4/nostruct-align/1bm4.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9780/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.128662
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b3jA
id: 1b3jA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3jA/nostruct-align/1b3jA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3jA/nostruct-align/1b3jA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b3jA/nostruct-align/1b3jA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10841/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.206665
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bndA
id: 1bndA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bndA/nostruct-align/1bndA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bndA/nostruct-align/1bndA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bndA/nostruct-align/1bndA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1639/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.103638
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b6cB
id: 1b6cB   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b6cB/nostruct-align/1b6cB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b6cB/nostruct-align/1b6cB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b6cB/nostruct-align/1b6cB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12662/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.530518
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bo4A
id: 1bo4A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bo4A/nostruct-align/1bo4A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bo4A/nostruct-align/1bo4A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bo4A/nostruct-align/1bo4A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21078/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.300537
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bnx
id: 1bnx   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bnx/nostruct-align/1bnx.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bnx/nostruct-align/1bnx.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bnx/nostruct-align/1bnx.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9573/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.444580
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bj5
id: 1bj5   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bj5/nostruct-align/1bj5.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bj5/nostruct-align/1bj5.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bj5/nostruct-align/1bj5.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25672/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.981567
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bo9
id: 1bo9   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bo9/nostruct-align/1bo9.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bo9/nostruct-align/1bo9.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bo9/nostruct-align/1bo9.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3307/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.057617
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bo1A
id: 1bo1A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bo1A/nostruct-align/1bo1A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bo1A/nostruct-align/1bo1A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bo1A/nostruct-align/1bo1A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26464/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.514526
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bk5A
id: 1bk5A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bk5A/nostruct-align/1bk5A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bk5A/nostruct-align/1bk5A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bk5A/nostruct-align/1bk5A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9892/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.444580
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bowA
id: 1bowA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bowA/nostruct-align/1bowA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bowA/nostruct-align/1bowA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bowA/nostruct-align/1bowA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19584/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.514648
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1boe
id: 1boe   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1boe/nostruct-align/1boe.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1boe/nostruct-align/1boe.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1boe/nostruct-align/1boe.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17403/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.095581
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bor
id: 1bor   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bor/nostruct-align/1bor.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bor/nostruct-align/1bor.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bor/nostruct-align/1bor.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5149/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.173584
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bglA
id: 1bglA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bglA/nostruct-align/1bglA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bglA/nostruct-align/1bglA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bglA/nostruct-align/1bglA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25259/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.135620
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bncA
id: 1bncA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bncA/nostruct-align/1bncA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bncA/nostruct-align/1bncA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bncA/nostruct-align/1bncA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19118/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.886597
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1boy
id: 1boy   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1boy/nostruct-align/1boy.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1boy/nostruct-align/1boy.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1boy/nostruct-align/1boy.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32434/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.269653
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bjwA
id: 1bjwA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bjwA/nostruct-align/1bjwA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bjwA/nostruct-align/1bjwA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bjwA/nostruct-align/1bjwA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18839/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.654663
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bmx
id: 1bmx   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bmx/nostruct-align/1bmx.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bmx/nostruct-align/1bmx.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bmx/nostruct-align/1bmx.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20477/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.542480
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bqv
id: 1bqv   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqv/nostruct-align/1bqv.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqv/nostruct-align/1bqv.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bqv/nostruct-align/1bqv.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9033/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.499512
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1brz
id: 1brz   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brz/nostruct-align/1brz.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brz/nostruct-align/1brz.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1brz/nostruct-align/1brz.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11504/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.256592
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bqk
id: 1bqk   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqk/nostruct-align/1bqk.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqk/nostruct-align/1bqk.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bqk/nostruct-align/1bqk.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24395/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.298584
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bqt
id: 1bqt   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqt/nostruct-align/1bqt.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqt/nostruct-align/1bqt.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bqt/nostruct-align/1bqt.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26192/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.258667
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bqsA
id: 1bqsA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqsA/nostruct-align/1bqsA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqsA/nostruct-align/1bqsA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bqsA/nostruct-align/1bqsA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31527/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.390625
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bqz
id: 1bqz   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqz/nostruct-align/1bqz.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqz/nostruct-align/1bqz.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bqz/nostruct-align/1bqz.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1902/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.262695
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bpv
id: 1bpv   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bpv/nostruct-align/1bpv.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bpv/nostruct-align/1bpv.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bpv/nostruct-align/1bpv.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32335/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.987549
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1brmA
id: 1brmA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brmA/nostruct-align/1brmA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brmA/nostruct-align/1brmA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1brmA/nostruct-align/1brmA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17158/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.985596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bpyA
id: 1bpyA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bpyA/nostruct-align/1bpyA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bpyA/nostruct-align/1bpyA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bpyA/nostruct-align/1bpyA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12898/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.317627
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bs4A
id: 1bs4A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bs4A/nostruct-align/1bs4A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bs4A/nostruct-align/1bs4A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bs4A/nostruct-align/1bs4A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1581/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.508545
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bt4
id: 1bt4   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bt4/nostruct-align/1bt4.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bt4/nostruct-align/1bt4.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bt4/nostruct-align/1bt4.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4952/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.827515
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1btkA
id: 1btkA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1btkA/nostruct-align/1btkA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1btkA/nostruct-align/1btkA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1btkA/nostruct-align/1btkA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25630/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.742554
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bt3A
id: 1bt3A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bt3A/nostruct-align/1bt3A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bt3A/nostruct-align/1bt3A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bt3A/nostruct-align/1bt3A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15338/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.455566
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bs2A
id: 1bs2A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bs2A/nostruct-align/1bs2A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bs2A/nostruct-align/1bs2A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bs2A/nostruct-align/1bs2A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8598/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.504639
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bqg
id: 1bqg   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqg/nostruct-align/1bqg.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqg/nostruct-align/1bqg.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bqg/nostruct-align/1bqg.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19450/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.944580
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1buhB
id: 1buhB   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1buhB/nostruct-align/1buhB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1buhB/nostruct-align/1buhB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1buhB/nostruct-align/1buhB.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-30219/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.162598
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bvb
id: 1bvb   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bvb/nostruct-align/1bvb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvb/nostruct-align/1bvb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bvb/nostruct-align/1bvb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29917/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.646606
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bli
id: 1bli   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bli/nostruct-align/1bli.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bli/nostruct-align/1bli.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bli/nostruct-align/1bli.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29073/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -19.099609
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bv6
id: 1bv6   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bv6/nostruct-align/1bv6.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bv6/nostruct-align/1bv6.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bv6/nostruct-align/1bv6.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1256/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.191528
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bvwA
id: 1bvwA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bvwA/nostruct-align/1bvwA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvwA/nostruct-align/1bvwA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bvwA/nostruct-align/1bvwA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17721/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.782593
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bw4
id: 1bw4   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bw4/nostruct-align/1bw4.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bw4/nostruct-align/1bw4.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bw4/nostruct-align/1bw4.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15615/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.425659
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1brwA
id: 1brwA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brwA/nostruct-align/1brwA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brwA/nostruct-align/1brwA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1brwA/nostruct-align/1brwA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-462/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.517578
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bw6
id: 1bw6   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bw6/nostruct-align/1bw6.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bw6/nostruct-align/1bw6.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bw6/nostruct-align/1bw6.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22183/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.942627
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bw8
id: 1bw8   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bw8/nostruct-align/1bw8.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bw8/nostruct-align/1bw8.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bw8/nostruct-align/1bw8.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9134/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.489624
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bu2A
id: 1bu2A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bu2A/nostruct-align/1bu2A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bu2A/nostruct-align/1bu2A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bu2A/nostruct-align/1bu2A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9841/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.401611
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bxm
id: 1bxm   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxm/nostruct-align/1bxm.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxm/nostruct-align/1bxm.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bxm/nostruct-align/1bxm.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22237/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.993652
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bxiB
id: 1bxiB   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxiB/nostruct-align/1bxiB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxiB/nostruct-align/1bxiB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bxiB/nostruct-align/1bxiB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13537/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.453613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bxyA
id: 1bxyA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxyA/nostruct-align/1bxyA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxyA/nostruct-align/1bxyA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bxyA/nostruct-align/1bxyA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27921/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.737549
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bquA
id: 1bquA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bquA/nostruct-align/1bquA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bquA/nostruct-align/1bquA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bquA/nostruct-align/1bquA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10450/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.095581
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bx4A
id: 1bx4A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bx4A/nostruct-align/1bx4A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bx4A/nostruct-align/1bx4A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bx4A/nostruct-align/1bx4A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14484/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.072632
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bw0A
id: 1bw0A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bw0A/nostruct-align/1bw0A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bw0A/nostruct-align/1bw0A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bw0A/nostruct-align/1bw0A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17264/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.718628
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1by1A
id: 1by1A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1by1A/nostruct-align/1by1A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1by1A/nostruct-align/1by1A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1by1A/nostruct-align/1by1A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7753/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.023682
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1byl
id: 1byl   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1byl/nostruct-align/1byl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1byl/nostruct-align/1byl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1byl/nostruct-align/1byl.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10095/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.253662
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1byrA
id: 1byrA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1byrA/nostruct-align/1byrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1byrA/nostruct-align/1byrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1byrA/nostruct-align/1byrA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14212/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.261597
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1byfA
id: 1byfA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1byfA/nostruct-align/1byfA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1byfA/nostruct-align/1byfA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1byfA/nostruct-align/1byfA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11133/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.024536
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bzg
id: 1bzg   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bzg/nostruct-align/1bzg.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bzg/nostruct-align/1bzg.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bzg/nostruct-align/1bzg.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17568/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.973633
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bzb
id: 1bzb   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bzb/nostruct-align/1bzb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bzb/nostruct-align/1bzb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bzb/nostruct-align/1bzb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23033/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.220581
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bzk
id: 1bzk   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bzk/nostruct-align/1bzk.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bzk/nostruct-align/1bzk.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bzk/nostruct-align/1bzk.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28700/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.470581
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c05A
id: 1c05A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c05A/nostruct-align/1c05A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c05A/nostruct-align/1c05A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c05A/nostruct-align/1c05A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12670/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.084595
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1be3C
id: 1be3C   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1be3C/nostruct-align/1be3C.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1be3C/nostruct-align/1be3C.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1be3C/nostruct-align/1be3C.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10517/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.193604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c1yB
id: 1c1yB   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c1yB/nostruct-align/1c1yB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c1yB/nostruct-align/1c1yB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c1yB/nostruct-align/1c1yB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13302/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.422607
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c1lA
id: 1c1lA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c1lA/nostruct-align/1c1lA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c1lA/nostruct-align/1c1lA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c1lA/nostruct-align/1c1lA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12688/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.909668
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c28A
id: 1c28A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c28A/nostruct-align/1c28A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c28A/nostruct-align/1c28A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c28A/nostruct-align/1c28A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23878/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.928589
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c2uA
id: 1c2uA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c2uA/nostruct-align/1c2uA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c2uA/nostruct-align/1c2uA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c2uA/nostruct-align/1c2uA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14482/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.016602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c20A
id: 1c20A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c20A/nostruct-align/1c20A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c20A/nostruct-align/1c20A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c20A/nostruct-align/1c20A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20363/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.220581
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1by5A
id: 1by5A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1by5A/nostruct-align/1by5A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1by5A/nostruct-align/1by5A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1by5A/nostruct-align/1by5A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11828/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -25.335693
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bxdA
id: 1bxdA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxdA/nostruct-align/1bxdA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxdA/nostruct-align/1bxdA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bxdA/nostruct-align/1bxdA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12889/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.685547
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c3wA
id: 1c3wA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3wA/nostruct-align/1c3wA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3wA/nostruct-align/1c3wA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c3wA/nostruct-align/1c3wA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3687/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.530640
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c4eA
id: 1c4eA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c4eA/nostruct-align/1c4eA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c4eA/nostruct-align/1c4eA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c4eA/nostruct-align/1c4eA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2446/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.075684
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c3yA
id: 1c3yA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3yA/nostruct-align/1c3yA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3yA/nostruct-align/1c3yA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c3yA/nostruct-align/1c3yA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7822/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.287598
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c53
id: 1c53   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c53/nostruct-align/1c53.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c53/nostruct-align/1c53.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c53/nostruct-align/1c53.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2769/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.302612
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c9kB
id: 1c9kB   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c9kB/nostruct-align/1c9kB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c9kB/nostruct-align/1c9kB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c9kB/nostruct-align/1c9kB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22999/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.808594
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ca9A
id: 1ca9A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ca9A/nostruct-align/1ca9A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ca9A/nostruct-align/1ca9A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1ca9A/nostruct-align/1ca9A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29274/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.003540
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cbf
id: 1cbf   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cbf/nostruct-align/1cbf.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cbf/nostruct-align/1cbf.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cbf/nostruct-align/1cbf.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21466/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.758545
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c3pA
id: 1c3pA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3pA/nostruct-align/1c3pA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3pA/nostruct-align/1c3pA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c3pA/nostruct-align/1c3pA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4873/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.846680
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ca1
id: 1ca1   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ca1/nostruct-align/1ca1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ca1/nostruct-align/1ca1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1ca1/nostruct-align/1ca1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9816/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.314575
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c4xA
id: 1c4xA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c4xA/nostruct-align/1c4xA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c4xA/nostruct-align/1c4xA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c4xA/nostruct-align/1c4xA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1651/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.993652
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bjt
id: 1bjt   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bjt/nostruct-align/1bjt.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bjt/nostruct-align/1bjt.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bjt/nostruct-align/1bjt.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9438/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.734619
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cd31
id: 1cd31   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cd31/nostruct-align/1cd31.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cd31/nostruct-align/1cd31.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cd31/nostruct-align/1cd31.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17058/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.840576
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cd3B
id: 1cd3B   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cd3B/nostruct-align/1cd3B.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cd3B/nostruct-align/1cd3B.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cd3B/nostruct-align/1cd3B.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23258/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.046631
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cds
id: 1cds   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cds/nostruct-align/1cds.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cds/nostruct-align/1cds.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cds/nostruct-align/1cds.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13366/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.252563
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ceeB
id: 1ceeB   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ceeB/nostruct-align/1ceeB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ceeB/nostruct-align/1ceeB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1ceeB/nostruct-align/1ceeB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27195/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.153564
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cb6A
id: 1cb6A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cb6A/nostruct-align/1cb6A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cb6A/nostruct-align/1cb6A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cb6A/nostruct-align/1cb6A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4671/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.731567
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cei
id: 1cei   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cei/nostruct-align/1cei.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cei/nostruct-align/1cei.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cei/nostruct-align/1cei.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9886/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.902710
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cf7A
id: 1cf7A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cf7A/nostruct-align/1cf7A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cf7A/nostruct-align/1cf7A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cf7A/nostruct-align/1cf7A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20396/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.114624
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cf4B
id: 1cf4B   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cf4B/nostruct-align/1cf4B.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cf4B/nostruct-align/1cf4B.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cf4B/nostruct-align/1cf4B.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27160/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.928711
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bihA
id: 1bihA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bihA/nostruct-align/1bihA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bihA/nostruct-align/1bihA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bihA/nostruct-align/1bihA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6927/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.807617
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cf1A
id: 1cf1A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cf1A/nostruct-align/1cf1A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cf1A/nostruct-align/1cf1A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cf1A/nostruct-align/1cf1A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3292/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.086670
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bvzA
id: 1bvzA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bvzA/nostruct-align/1bvzA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvzA/nostruct-align/1bvzA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bvzA/nostruct-align/1bvzA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13879/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.978638
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cjaA
id: 1cjaA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cjaA/nostruct-align/1cjaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cjaA/nostruct-align/1cjaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cjaA/nostruct-align/1cjaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32497/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.949585
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cfi
id: 1cfi   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cfi/nostruct-align/1cfi.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cfi/nostruct-align/1cfi.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cfi/nostruct-align/1cfi.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27664/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.408569
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ck9A
id: 1ck9A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ck9A/nostruct-align/1ck9A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ck9A/nostruct-align/1ck9A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1ck9A/nostruct-align/1ck9A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27430/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.991577
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ckqA
id: 1ckqA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ckqA/nostruct-align/1ckqA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ckqA/nostruct-align/1ckqA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1ckqA/nostruct-align/1ckqA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18581/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.312622
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cjdA
id: 1cjdA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cjdA/nostruct-align/1cjdA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cjdA/nostruct-align/1cjdA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cjdA/nostruct-align/1cjdA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27269/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.356567
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ckmA
id: 1ckmA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ckmA/nostruct-align/1ckmA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ckmA/nostruct-align/1ckmA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1ckmA/nostruct-align/1ckmA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31731/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.408569
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cklB
id: 1cklB   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cklB/nostruct-align/1cklB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cklB/nostruct-align/1cklB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cklB/nostruct-align/1cklB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14066/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.777588
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ci0A
id: 1ci0A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ci0A/nostruct-align/1ci0A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ci0A/nostruct-align/1ci0A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1ci0A/nostruct-align/1ci0A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2075/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.242554
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ckeA
id: 1ckeA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ckeA/nostruct-align/1ckeA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ckeA/nostruct-align/1ckeA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1ckeA/nostruct-align/1ckeA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-659/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.989624
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1chuA
id: 1chuA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1chuA/nostruct-align/1chuA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1chuA/nostruct-align/1chuA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1chuA/nostruct-align/1chuA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31770/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.715576
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cl4A
id: 1cl4A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cl4A/nostruct-align/1cl4A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cl4A/nostruct-align/1cl4A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cl4A/nostruct-align/1cl4A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6068/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.066528
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cezA
id: 1cezA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cezA/nostruct-align/1cezA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cezA/nostruct-align/1cezA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cezA/nostruct-align/1cezA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1512/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.274658
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cmr
id: 1cmr   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cmr/nostruct-align/1cmr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cmr/nostruct-align/1cmr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cmr/nostruct-align/1cmr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16633/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.787598
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ckv
id: 1ckv   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ckv/nostruct-align/1ckv.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ckv/nostruct-align/1ckv.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1ckv/nostruct-align/1ckv.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5672/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.926636
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cnt3
id: 1cnt3   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cnt3/nostruct-align/1cnt3.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cnt3/nostruct-align/1cnt3.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cnt3/nostruct-align/1cnt3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25906/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.123657
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cl2A
id: 1cl2A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cl2A/nostruct-align/1cl2A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cl2A/nostruct-align/1cl2A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cl2A/nostruct-align/1cl2A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27932/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.263550
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cliA
id: 1cliA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cliA/nostruct-align/1cliA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cliA/nostruct-align/1cliA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cliA/nostruct-align/1cliA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18183/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.944580
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ciy
id: 1ciy   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ciy/nostruct-align/1ciy.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ciy/nostruct-align/1ciy.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1ciy/nostruct-align/1ciy.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15785/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -16.823608
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cii
id: 1cii   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cii/nostruct-align/1cii.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cii/nostruct-align/1cii.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cii/nostruct-align/1cii.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5395/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -17.472656
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cnsA
id: 1cnsA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cnsA/nostruct-align/1cnsA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cnsA/nostruct-align/1cnsA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cnsA/nostruct-align/1cnsA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9285/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -19.582642
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1byuA
id: 1byuA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1byuA/nostruct-align/1byuA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1byuA/nostruct-align/1byuA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1byuA/nostruct-align/1byuA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16592/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.007568
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cktA
id: 1cktA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cktA/nostruct-align/1cktA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cktA/nostruct-align/1cktA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cktA/nostruct-align/1cktA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25602/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.757690
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cof
id: 1cof   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cof/nostruct-align/1cof.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cof/nostruct-align/1cof.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cof/nostruct-align/1cof.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12370/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.666626
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cr1A
id: 1cr1A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cr1A/nostruct-align/1cr1A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cr1A/nostruct-align/1cr1A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cr1A/nostruct-align/1cr1A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3998/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.459595
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cozA
id: 1cozA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cozA/nostruct-align/1cozA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cozA/nostruct-align/1cozA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cozA/nostruct-align/1cozA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6533/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.189697
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cokA
id: 1cokA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cokA/nostruct-align/1cokA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cokA/nostruct-align/1cokA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cokA/nostruct-align/1cokA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23290/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.981689
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1co4A
id: 1co4A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1co4A/nostruct-align/1co4A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1co4A/nostruct-align/1co4A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1co4A/nostruct-align/1co4A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30213/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.643555
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cll
id: 1cll   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cll/nostruct-align/1cll.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cll/nostruct-align/1cll.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cll/nostruct-align/1cll.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8311/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.505615
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ct5A
id: 1ct5A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ct5A/nostruct-align/1ct5A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ct5A/nostruct-align/1ct5A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1ct5A/nostruct-align/1ct5A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4571/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.024658
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cto
id: 1cto   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cto/nostruct-align/1cto.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cto/nostruct-align/1cto.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cto/nostruct-align/1cto.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25418/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.244629
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ctt
id: 1ctt   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ctt/nostruct-align/1ctt.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ctt/nostruct-align/1ctt.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1ctt/nostruct-align/1ctt.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7725/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.670654
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cqqA
id: 1cqqA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cqqA/nostruct-align/1cqqA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cqqA/nostruct-align/1cqqA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cqqA/nostruct-align/1cqqA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3994/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.587646
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cqxA
id: 1cqxA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cqxA/nostruct-align/1cqxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cqxA/nostruct-align/1cqxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cqxA/nostruct-align/1cqxA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18855/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.141602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ck7A
id: 1ck7A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ck7A/nostruct-align/1ck7A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ck7A/nostruct-align/1ck7A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1ck7A/nostruct-align/1ck7A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4335/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.347656
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ctdA
id: 1ctdA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ctdA/nostruct-align/1ctdA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ctdA/nostruct-align/1ctdA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1ctdA/nostruct-align/1ctdA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30572/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.663574
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cw5A
id: 1cw5A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cw5A/nostruct-align/1cw5A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cw5A/nostruct-align/1cw5A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cw5A/nostruct-align/1cw5A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20594/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.002563
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cviA
id: 1cviA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cviA/nostruct-align/1cviA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cviA/nostruct-align/1cviA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cviA/nostruct-align/1cviA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29151/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.139648
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cs8A
id: 1cs8A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cs8A/nostruct-align/1cs8A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cs8A/nostruct-align/1cs8A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cs8A/nostruct-align/1cs8A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file ./tmp/tmp-build-weighted-model-alpha-6366/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.384521
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cxzB
id: 1cxzB   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cxzB/nostruct-align/1cxzB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cxzB/nostruct-align/1cxzB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cxzB/nostruct-align/1cxzB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1587/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.024536
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cwxA
id: 1cwxA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cwxA/nostruct-align/1cwxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cwxA/nostruct-align/1cwxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cwxA/nostruct-align/1cwxA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6324/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.447632
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cunA
id: 1cunA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cunA/nostruct-align/1cunA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cunA/nostruct-align/1cunA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cunA/nostruct-align/1cunA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9157/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.795532
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cz4A
id: 1cz4A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cz4A/nostruct-align/1cz4A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cz4A/nostruct-align/1cz4A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cz4A/nostruct-align/1cz4A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23148/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.315674
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d4aA
id: 1d4aA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d4aA/nostruct-align/1d4aA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d4aA/nostruct-align/1d4aA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d4aA/nostruct-align/1d4aA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22445/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.535522
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d1rA
id: 1d1rA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d1rA/nostruct-align/1d1rA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d1rA/nostruct-align/1d1rA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d1rA/nostruct-align/1d1rA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14140/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.280518
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d3yA
id: 1d3yA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d3yA/nostruct-align/1d3yA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d3yA/nostruct-align/1d3yA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d3yA/nostruct-align/1d3yA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14417/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.062622
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d4vA
id: 1d4vA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d4vA/nostruct-align/1d4vA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d4vA/nostruct-align/1d4vA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d4vA/nostruct-align/1d4vA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20440/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.744629
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1czqA
id: 1czqA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1czqA/nostruct-align/1czqA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1czqA/nostruct-align/1czqA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1czqA/nostruct-align/1czqA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2950/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.044678
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cqeA
id: 1cqeA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cqeA/nostruct-align/1cqeA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cqeA/nostruct-align/1cqeA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cqeA/nostruct-align/1cqeA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25907/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.452637
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cwvA
id: 1cwvA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cwvA/nostruct-align/1cwvA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cwvA/nostruct-align/1cwvA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cwvA/nostruct-align/1cwvA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15289/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -15.763550
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d0nA
id: 1d0nA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d0nA/nostruct-align/1d0nA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d0nA/nostruct-align/1d0nA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d0nA/nostruct-align/1d0nA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7519/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.776611
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1czfA
id: 1czfA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1czfA/nostruct-align/1czfA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1czfA/nostruct-align/1czfA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1czfA/nostruct-align/1czfA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12403/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -18.369629
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cx8B
id: 1cx8B   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cx8B/nostruct-align/1cx8B.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cx8B/nostruct-align/1cx8B.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cx8B/nostruct-align/1cx8B.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19572/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.185547
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dcpA
id: 1dcpA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dcpA/nostruct-align/1dcpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dcpA/nostruct-align/1dcpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dcpA/nostruct-align/1dcpA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11691/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.364624
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d4tA
id: 1d4tA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d4tA/nostruct-align/1d4tA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d4tA/nostruct-align/1d4tA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d4tA/nostruct-align/1d4tA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3343/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.787598
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d66A
id: 1d66A   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d66A/nostruct-align/1d66A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d66A/nostruct-align/1d66A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d66A/nostruct-align/1d66A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9825/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.400635
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ddbA
id: 1ddbA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1ddbA/nostruct-align/1ddbA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1ddbA/nostruct-align/1ddbA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1ddbA/nostruct-align/1ddbA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26031/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.887695
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dbh
id: 1dbh   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dbh/nostruct-align/1dbh.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dbh/nostruct-align/1dbh.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dbh/nostruct-align/1dbh.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31790/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.170532
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dapA
id: 1dapA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dapA/nostruct-align/1dapA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dapA/nostruct-align/1dapA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dapA/nostruct-align/1dapA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28500/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.786621
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d9cA
id: 1d9cA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d9cA/nostruct-align/1d9cA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d9cA/nostruct-align/1d9cA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d9cA/nostruct-align/1d9cA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20386/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.213623
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ddcA
id: 1ddcA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1ddcA/nostruct-align/1ddcA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1ddcA/nostruct-align/1ddcA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1ddcA/nostruct-align/1ddcA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18439/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.754517
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d4vB
id: 1d4vB   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d4vB/nostruct-align/1d4vB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d4vB/nostruct-align/1d4vB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d4vB/nostruct-align/1d4vB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24964/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.762573
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cqkA
id: 1cqkA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cqkA/nostruct-align/1cqkA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cqkA/nostruct-align/1cqkA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cqkA/nostruct-align/1cqkA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7787/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.699585
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d8cA
id: 1d8cA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d8cA/nostruct-align/1d8cA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d8cA/nostruct-align/1d8cA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d8cA/nostruct-align/1d8cA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20951/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.172607
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dnv
id: 1dnv   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dnv/nostruct-align/1dnv.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dnv/nostruct-align/1dnv.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dnv/nostruct-align/1dnv.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20658/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.586670
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dhs
id: 1dhs   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dhs/nostruct-align/1dhs.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dhs/nostruct-align/1dhs.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dhs/nostruct-align/1dhs.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23012/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.007568
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dipB
id: 1dipB   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dipB/nostruct-align/1dipB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dipB/nostruct-align/1dipB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dipB/nostruct-align/1dipB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27942/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.172607
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dkgA
id: 1dkgA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dkgA/nostruct-align/1dkgA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dkgA/nostruct-align/1dkgA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dkgA/nostruct-align/1dkgA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17755/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.985596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1eayC
id: 1eayC   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eayC/nostruct-align/1eayC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eayC/nostruct-align/1eayC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1eayC/nostruct-align/1eayC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5412/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.083618
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1clqA
id: 1clqA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1clqA/nostruct-align/1clqA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1clqA/nostruct-align/1clqA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1clqA/nostruct-align/1clqA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31423/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.052612
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1eciA
id: 1eciA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eciA/nostruct-align/1eciA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eciA/nostruct-align/1eciA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1eciA/nostruct-align/1eciA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4438/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.008545
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dipA
id: 1dipA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dipA/nostruct-align/1dipA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dipA/nostruct-align/1dipA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dipA/nostruct-align/1dipA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23100/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.172607
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dssG
id: 1dssG   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dssG/nostruct-align/1dssG.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dssG/nostruct-align/1dssG.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dssG/nostruct-align/1dssG.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20153/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.673584
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ebdC
id: 1ebdC   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ebdC/nostruct-align/1ebdC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ebdC/nostruct-align/1ebdC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1ebdC/nostruct-align/1ebdC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19367/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.588623
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1eerA
id: 1eerA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eerA/nostruct-align/1eerA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eerA/nostruct-align/1eerA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1eerA/nostruct-align/1eerA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17281/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.458496
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1efuB
id: 1efuB   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1efuB/nostruct-align/1efuB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1efuB/nostruct-align/1efuB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1efuB/nostruct-align/1efuB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25745/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.396606
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1eerB
id: 1eerB   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eerB/nostruct-align/1eerB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eerB/nostruct-align/1eerB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1eerB/nostruct-align/1eerB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19401/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.213623
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d5rA
id: 1d5rA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d5rA/nostruct-align/1d5rA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d5rA/nostruct-align/1d5rA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d5rA/nostruct-align/1d5rA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9988/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.869507
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1egpA
id: 1egpA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1egpA/nostruct-align/1egpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1egpA/nostruct-align/1egpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1egpA/nostruct-align/1egpA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25229/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.582642
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1eh2
id: 1eh2   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eh2/nostruct-align/1eh2.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eh2/nostruct-align/1eh2.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1eh2/nostruct-align/1eh2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24118/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.761597
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1djxB
id: 1djxB   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1djxB/nostruct-align/1djxB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1djxB/nostruct-align/1djxB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1djxB/nostruct-align/1djxB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8596/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.366577
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ecfB
id: 1ecfB   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ecfB/nostruct-align/1ecfB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ecfB/nostruct-align/1ecfB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1ecfB/nostruct-align/1ecfB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5047/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.451538
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1emn
id: 1emn   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1emn/nostruct-align/1emn.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1emn/nostruct-align/1emn.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1emn/nostruct-align/1emn.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26795/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.249512
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1efvB
id: 1efvB   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1efvB/nostruct-align/1efvB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1efvB/nostruct-align/1efvB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1efvB/nostruct-align/1efvB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27971/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.152588
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cxlA
id: 1cxlA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cxlA/nostruct-align/1cxlA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cxlA/nostruct-align/1cxlA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cxlA/nostruct-align/1cxlA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2159/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -23.458618
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1edhA
id: 1edhA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1edhA/nostruct-align/1edhA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1edhA/nostruct-align/1edhA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1edhA/nostruct-align/1edhA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9346/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.551636
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1eagA
id: 1eagA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eagA/nostruct-align/1eagA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eagA/nostruct-align/1eagA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1eagA/nostruct-align/1eagA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17142/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.450684
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1derA
id: 1derA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1derA/nostruct-align/1derA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1derA/nostruct-align/1derA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1derA/nostruct-align/1derA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14477/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.352539
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dpgA
id: 1dpgA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dpgA/nostruct-align/1dpgA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dpgA/nostruct-align/1dpgA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dpgA/nostruct-align/1dpgA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4398/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.101685
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1egaA
id: 1egaA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1egaA/nostruct-align/1egaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1egaA/nostruct-align/1egaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1egaA/nostruct-align/1egaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7634/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.851562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ehyA
id: 1ehyA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ehyA/nostruct-align/1ehyA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ehyA/nostruct-align/1ehyA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1ehyA/nostruct-align/1ehyA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16631/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.129639
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1efnB
id: 1efnB   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1efnB/nostruct-align/1efnB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1efnB/nostruct-align/1efnB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1efnB/nostruct-align/1efnB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32213/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.952515
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fadA
id: 1fadA   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fadA/nostruct-align/1fadA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fadA/nostruct-align/1fadA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fadA/nostruct-align/1fadA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24051/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.126587
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ery
id: 1ery   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ery/nostruct-align/1ery.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ery/nostruct-align/1ery.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1ery/nostruct-align/1ery.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6851/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.171509
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1equ
id: 1equ   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1equ/nostruct-align/1equ.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1equ/nostruct-align/1equ.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1equ/nostruct-align/1equ.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22301/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.217529
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1evhA
id: 1evhA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1evhA/nostruct-align/1evhA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1evhA/nostruct-align/1evhA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1evhA/nostruct-align/1evhA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10207/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -17.153564
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1etb1
id: 1etb1   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1etb1/nostruct-align/1etb1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1etb1/nostruct-align/1etb1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1etb1/nostruct-align/1etb1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4894/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.370605
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1extA
id: 1extA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1extA/nostruct-align/1extA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1extA/nostruct-align/1extA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1extA/nostruct-align/1extA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26134/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.618530
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fct
id: 1fct   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fct/nostruct-align/1fct.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fct/nostruct-align/1fct.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fct/nostruct-align/1fct.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3092/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.239624
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1far
id: 1far   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1far/nostruct-align/1far.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1far/nostruct-align/1far.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1far/nostruct-align/1far.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26457/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.274658
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1envA
id: 1envA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1envA/nostruct-align/1envA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1envA/nostruct-align/1envA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1envA/nostruct-align/1envA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29486/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.538696
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fcdC
id: 1fcdC   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fcdC/nostruct-align/1fcdC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fcdC/nostruct-align/1fcdC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fcdC/nostruct-align/1fcdC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25036/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.554688
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fkj
id: 1fkj   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fkj/nostruct-align/1fkj.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fkj/nostruct-align/1fkj.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fkj/nostruct-align/1fkj.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26876/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.343628
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fmtA
id: 1fmtA   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fmtA/nostruct-align/1fmtA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fmtA/nostruct-align/1fmtA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fmtA/nostruct-align/1fmtA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-800/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.562622
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1f13A
id: 1f13A   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1f13A/nostruct-align/1f13A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1f13A/nostruct-align/1f13A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1f13A/nostruct-align/1f13A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2960/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.585571
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1euhA
id: 1euhA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1euhA/nostruct-align/1euhA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1euhA/nostruct-align/1euhA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1euhA/nostruct-align/1euhA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11750/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.034668
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1efcA
id: 1efcA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1efcA/nostruct-align/1efcA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1efcA/nostruct-align/1efcA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1efcA/nostruct-align/1efcA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18868/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.638550
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1exnA
id: 1exnA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1exnA/nostruct-align/1exnA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1exnA/nostruct-align/1exnA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1exnA/nostruct-align/1exnA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31603/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.036621
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1eut
id: 1eut   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eut/nostruct-align/1eut.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eut/nostruct-align/1eut.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1eut/nostruct-align/1eut.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2972/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -17.365601
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1eia
id: 1eia   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eia/nostruct-align/1eia.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eia/nostruct-align/1eia.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1eia/nostruct-align/1eia.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20261/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.584595
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fre
id: 1fre   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fre/nostruct-align/1fre.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fre/nostruct-align/1fre.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fre/nostruct-align/1fre.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23051/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.630615
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fumC
id: 1fumC   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fumC/nostruct-align/1fumC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fumC/nostruct-align/1fumC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fumC/nostruct-align/1fumC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14201/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.902588
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fumD
id: 1fumD   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fumD/nostruct-align/1fumD.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fumD/nostruct-align/1fumD.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fumD/nostruct-align/1fumD.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24866/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.911499
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fumB
id: 1fumB   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fumB/nostruct-align/1fumB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fumB/nostruct-align/1fumB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fumB/nostruct-align/1fumB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22493/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.660645
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fsb
id: 1fsb   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fsb/nostruct-align/1fsb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fsb/nostruct-align/1fsb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fsb/nostruct-align/1fsb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2762/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.104614
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fiy
id: 1fiy   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fiy/nostruct-align/1fiy.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fiy/nostruct-align/1fiy.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fiy/nostruct-align/1fiy.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31583/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.369629
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fsz
id: 1fsz   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fsz/nostruct-align/1fsz.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fsz/nostruct-align/1fsz.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fsz/nostruct-align/1fsz.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1871/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.885620
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fzgD
id: 1fzgD   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fzgD/nostruct-align/1fzgD.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fzgD/nostruct-align/1fzgD.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fzgD/nostruct-align/1fzgD.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29302/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.441650
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gab
id: 1gab   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gab/nostruct-align/1gab.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gab/nostruct-align/1gab.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gab/nostruct-align/1gab.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18692/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.007568
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1frb
id: 1frb   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1frb/nostruct-align/1frb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1frb/nostruct-align/1frb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1frb/nostruct-align/1frb.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15258/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.550659
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fohA
id: 1fohA   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fohA/nostruct-align/1fohA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fohA/nostruct-align/1fohA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fohA/nostruct-align/1fohA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3185/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.112671
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dik
id: 1dik   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dik/nostruct-align/1dik.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dik/nostruct-align/1dik.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dik/nostruct-align/1dik.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11021/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.751587
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fvl
id: 1fvl   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fvl/nostruct-align/1fvl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fvl/nostruct-align/1fvl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fvl/nostruct-align/1fvl.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19425/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.930542
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ghj
id: 1ghj   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1ghj/nostruct-align/1ghj.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1ghj/nostruct-align/1ghj.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1ghj/nostruct-align/1ghj.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19560/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.851562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gggB
id: 1gggB   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gggB/nostruct-align/1gggB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gggB/nostruct-align/1gggB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gggB/nostruct-align/1gggB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22308/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.296509
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gln
id: 1gln   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gln/nostruct-align/1gln.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gln/nostruct-align/1gln.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gln/nostruct-align/1gln.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28155/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -28.209595
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gen
id: 1gen   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gen/nostruct-align/1gen.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gen/nostruct-align/1gen.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gen/nostruct-align/1gen.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16095/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.272583
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gceA
id: 1gceA   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gceA/nostruct-align/1gceA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gceA/nostruct-align/1gceA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gceA/nostruct-align/1gceA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9460/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.338623
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fnf
id: 1fnf   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fnf/nostruct-align/1fnf.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fnf/nostruct-align/1fnf.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fnf/nostruct-align/1fnf.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29966/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.757568
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cdkA
id: 1cdkA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdkA/nostruct-align/1cdkA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdkA/nostruct-align/1cdkA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cdkA/nostruct-align/1cdkA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16105/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.358643
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gnwA
id: 1gnwA   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gnwA/nostruct-align/1gnwA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gnwA/nostruct-align/1gnwA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gnwA/nostruct-align/1gnwA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9011/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.610596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fnhA
id: 1fnhA   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fnhA/nostruct-align/1fnhA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fnhA/nostruct-align/1fnhA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fnhA/nostruct-align/1fnhA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18871/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.575562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1grj
id: 1grj   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1grj/nostruct-align/1grj.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1grj/nostruct-align/1grj.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1grj/nostruct-align/1grj.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26484/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.727661
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gpt
id: 1gpt   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gpt/nostruct-align/1gpt.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gpt/nostruct-align/1gpt.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gpt/nostruct-align/1gpt.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10320/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.427612
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1guxA
id: 1guxA   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1guxA/nostruct-align/1guxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1guxA/nostruct-align/1guxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1guxA/nostruct-align/1guxA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14448/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.383545
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gw4
id: 1gw4   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gw4/nostruct-align/1gw4.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gw4/nostruct-align/1gw4.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gw4/nostruct-align/1gw4.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31013/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.158569
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hjp
id: 1hjp   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hjp/nostruct-align/1hjp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hjp/nostruct-align/1hjp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hjp/nostruct-align/1hjp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19638/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.671509
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1havA
id: 1havA   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1havA/nostruct-align/1havA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1havA/nostruct-align/1havA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1havA/nostruct-align/1havA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7700/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.869629
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fdo
id: 1fdo   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fdo/nostruct-align/1fdo.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fdo/nostruct-align/1fdo.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fdo/nostruct-align/1fdo.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10032/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.185547
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hfh
id: 1hfh   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hfh/nostruct-align/1hfh.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hfh/nostruct-align/1hfh.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hfh/nostruct-align/1hfh.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25967/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.860596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hleB
id: 1hleB   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hleB/nostruct-align/1hleB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hleB/nostruct-align/1hleB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hleB/nostruct-align/1hleB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8478/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.895630
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hp8
id: 1hp8   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hp8/nostruct-align/1hp8.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hp8/nostruct-align/1hp8.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hp8/nostruct-align/1hp8.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3435/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.071655
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gpmA
id: 1gpmA   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gpmA/nostruct-align/1gpmA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gpmA/nostruct-align/1gpmA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gpmA/nostruct-align/1gpmA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16312/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.266602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hph
id: 1hph   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hph/nostruct-align/1hph.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hph/nostruct-align/1hph.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hph/nostruct-align/1hph.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-117/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.026611
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fgkA
id: 1fgkA   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fgkA/nostruct-align/1fgkA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fgkA/nostruct-align/1fgkA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fgkA/nostruct-align/1fgkA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1239/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.090576
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gfs
id: 1gfs   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gfs/nostruct-align/1gfs.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gfs/nostruct-align/1gfs.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gfs/nostruct-align/1gfs.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6510/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.388550
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hkcA
id: 1hkcA   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hkcA/nostruct-align/1hkcA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hkcA/nostruct-align/1hkcA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hkcA/nostruct-align/1hkcA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13968/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.200562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1griA
id: 1griA   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1griA/nostruct-align/1griA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1griA/nostruct-align/1griA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1griA/nostruct-align/1griA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18518/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.547607
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hth
id: 1hth   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hth/nostruct-align/1hth.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hth/nostruct-align/1hth.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hth/nostruct-align/1hth.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23013/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.878662
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gtrA
id: 1gtrA   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gtrA/nostruct-align/1gtrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gtrA/nostruct-align/1gtrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gtrA/nostruct-align/1gtrA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4526/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.042603
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hssA
id: 1hssA   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hssA/nostruct-align/1hssA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hssA/nostruct-align/1hssA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hssA/nostruct-align/1hssA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10881/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.231689
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1htn
id: 1htn   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1htn/nostruct-align/1htn.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1htn/nostruct-align/1htn.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1htn/nostruct-align/1htn.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22147/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.487671
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hiwA
id: 1hiwA   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hiwA/nostruct-align/1hiwA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hiwA/nostruct-align/1hiwA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hiwA/nostruct-align/1hiwA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25684/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.401611
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hwtC
id: 1hwtC   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hwtC/nostruct-align/1hwtC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hwtC/nostruct-align/1hwtC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hwtC/nostruct-align/1hwtC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15366/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.806519
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hucA
id: 1hucA   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hucA/nostruct-align/1hucA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hucA/nostruct-align/1hucA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hucA/nostruct-align/1hucA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6118/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.878540
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ifi
id: 1ifi   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ifi/nostruct-align/1ifi.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ifi/nostruct-align/1ifi.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1ifi/nostruct-align/1ifi.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25737/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.897583
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hymA
id: 1hymA   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hymA/nostruct-align/1hymA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hymA/nostruct-align/1hymA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hymA/nostruct-align/1hymA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26850/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.602661
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hgeB
id: 1hgeB   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hgeB/nostruct-align/1hgeB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hgeB/nostruct-align/1hgeB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hgeB/nostruct-align/1hgeB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-931/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.701660
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ifp
id: 1ifp   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ifp/nostruct-align/1ifp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ifp/nostruct-align/1ifp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1ifp/nostruct-align/1ifp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28853/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.720581
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ihvA
id: 1ihvA   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ihvA/nostruct-align/1ihvA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ihvA/nostruct-align/1ihvA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1ihvA/nostruct-align/1ihvA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10945/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.265503
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1iba
id: 1iba   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iba/nostruct-align/1iba.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iba/nostruct-align/1iba.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1iba/nostruct-align/1iba.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25897/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.698608
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1i16
id: 1i16   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1i16/nostruct-align/1i16.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1i16/nostruct-align/1i16.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1i16/nostruct-align/1i16.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23163/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.714600
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gc1H
id: 1gc1H   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gc1H/nostruct-align/1gc1H.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gc1H/nostruct-align/1gc1H.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gc1H/nostruct-align/1gc1H.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15106/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.409668
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ifa
id: 1ifa   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ifa/nostruct-align/1ifa.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ifa/nostruct-align/1ifa.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1ifa/nostruct-align/1ifa.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31257/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.563599
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1iknA
id: 1iknA   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iknA/nostruct-align/1iknA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iknA/nostruct-align/1iknA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1iknA/nostruct-align/1iknA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29703/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.092529
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1iml
id: 1iml   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iml/nostruct-align/1iml.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iml/nostruct-align/1iml.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1iml/nostruct-align/1iml.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7710/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.378662
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hyt
id: 1hyt   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hyt/nostruct-align/1hyt.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hyt/nostruct-align/1hyt.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hyt/nostruct-align/1hyt.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5975/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.228516
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1iae
id: 1iae   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iae/nostruct-align/1iae.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iae/nostruct-align/1iae.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1iae/nostruct-align/1iae.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27168/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.402588
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ioj
id: 1ioj   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ioj/nostruct-align/1ioj.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ioj/nostruct-align/1ioj.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1ioj/nostruct-align/1ioj.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26822/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.685669
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1irp
id: 1irp   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1irp/nostruct-align/1irp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1irp/nostruct-align/1irp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1irp/nostruct-align/1irp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11262/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.798584
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1jenB
id: 1jenB   alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jenB/nostruct-align/1jenB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jenB/nostruct-align/1jenB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1j/1jenB/nostruct-align/1jenB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19447/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.982544
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1jenA
id: 1jenA   alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jenA/nostruct-align/1jenA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jenA/nostruct-align/1jenA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1j/1jenA/nostruct-align/1jenA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17021/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.880615
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ixxB
id: 1ixxB   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ixxB/nostruct-align/1ixxB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ixxB/nostruct-align/1ixxB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1ixxB/nostruct-align/1ixxB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23149/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.635620
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ixmA
id: 1ixmA   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ixmA/nostruct-align/1ixmA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ixmA/nostruct-align/1ixmA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1ixmA/nostruct-align/1ixmA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1500/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.201538
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1iyu
id: 1iyu   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iyu/nostruct-align/1iyu.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iyu/nostruct-align/1iyu.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1iyu/nostruct-align/1iyu.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20247/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.934692
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1iknD
id: 1iknD   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iknD/nostruct-align/1iknD.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iknD/nostruct-align/1iknD.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1iknD/nostruct-align/1iknD.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24833/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.017578
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hdmB
id: 1hdmB   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hdmB/nostruct-align/1hdmB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hdmB/nostruct-align/1hdmB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hdmB/nostruct-align/1hdmB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27316/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.937622
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1kdxA
id: 1kdxA   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kdxA/nostruct-align/1kdxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kdxA/nostruct-align/1kdxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1kdxA/nostruct-align/1kdxA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18383/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.121582
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1kjs
id: 1kjs   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kjs/nostruct-align/1kjs.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kjs/nostruct-align/1kjs.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1kjs/nostruct-align/1kjs.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12024/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.736572
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1jotA
id: 1jotA   alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jotA/nostruct-align/1jotA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jotA/nostruct-align/1jotA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1j/1jotA/nostruct-align/1jotA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15536/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.529541
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1kigI
id: 1kigI   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kigI/nostruct-align/1kigI.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kigI/nostruct-align/1kigI.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1kigI/nostruct-align/1kigI.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14595/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.458618
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1junA
id: 1junA   alignment found: /projects/compbio/experiments/models.97/pdb/1j/1junA/nostruct-align/1junA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1junA/nostruct-align/1junA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1j/1junA/nostruct-align/1junA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12474/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.688599
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ivyA
id: 1ivyA   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ivyA/nostruct-align/1ivyA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ivyA/nostruct-align/1ivyA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1ivyA/nostruct-align/1ivyA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29124/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.591553
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1kit
id: 1kit   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kit/nostruct-align/1kit.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kit/nostruct-align/1kit.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1kit/nostruct-align/1kit.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-55/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -20.353638
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ktx
id: 1ktx   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1ktx/nostruct-align/1ktx.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1ktx/nostruct-align/1ktx.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1ktx/nostruct-align/1ktx.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1043/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.856567
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1jevA
id: 1jevA   alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jevA/nostruct-align/1jevA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jevA/nostruct-align/1jevA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1j/1jevA/nostruct-align/1jevA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12877/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.880615
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1k89
id: 1k89   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1k89/nostruct-align/1k89.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1k89/nostruct-align/1k89.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1k89/nostruct-align/1k89.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30752/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.953613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1kum
id: 1kum   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kum/nostruct-align/1kum.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kum/nostruct-align/1kum.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1kum/nostruct-align/1kum.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15782/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.598633
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1igrA
id: 1igrA   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1igrA/nostruct-align/1igrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1igrA/nostruct-align/1igrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1igrA/nostruct-align/1igrA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27666/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.247559
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1kas
id: 1kas   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kas/nostruct-align/1kas.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kas/nostruct-align/1kas.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1kas/nostruct-align/1kas.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21508/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.872559
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1kwaA
id: 1kwaA   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1kwaA/nostruct-align/1kwaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1kwaA/nostruct-align/1kwaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1kwaA/nostruct-align/1kwaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1746/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.679565
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1klo
id: 1klo   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1klo/nostruct-align/1klo.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1klo/nostruct-align/1klo.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1klo/nostruct-align/1klo.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2641/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.508545
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1heiA
id: 1heiA   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1heiA/nostruct-align/1heiA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1heiA/nostruct-align/1heiA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1heiA/nostruct-align/1heiA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24996/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.002686
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1jkmA
id: 1jkmA   alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jkmA/nostruct-align/1jkmA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jkmA/nostruct-align/1jkmA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1j/1jkmA/nostruct-align/1jkmA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26657/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.937622
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lepA
id: 1lepA   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lepA/nostruct-align/1lepA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lepA/nostruct-align/1lepA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lepA/nostruct-align/1lepA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11968/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.021606
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lfdA
id: 1lfdA   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lfdA/nostruct-align/1lfdA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lfdA/nostruct-align/1lfdA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lfdA/nostruct-align/1lfdA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21918/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.063599
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lghB
id: 1lghB   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lghB/nostruct-align/1lghB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lghB/nostruct-align/1lghB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lghB/nostruct-align/1lghB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1075/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.490601
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1iakB
id: 1iakB   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iakB/nostruct-align/1iakB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iakB/nostruct-align/1iakB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1iakB/nostruct-align/1iakB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11742/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.791626
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lbeA
id: 1lbeA   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lbeA/nostruct-align/1lbeA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lbeA/nostruct-align/1lbeA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lbeA/nostruct-align/1lbeA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29834/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.630615
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lay
id: 1lay   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lay/nostruct-align/1lay.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lay/nostruct-align/1lay.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lay/nostruct-align/1lay.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10297/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.920654
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1led
id: 1led   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1led/nostruct-align/1led.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1led/nostruct-align/1led.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1led/nostruct-align/1led.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19356/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.473511
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1l92
id: 1l92   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1l92/nostruct-align/1l92.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1l92/nostruct-align/1l92.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1l92/nostruct-align/1l92.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30982/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.600586
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ltaC
id: 1ltaC   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1ltaC/nostruct-align/1ltaC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1ltaC/nostruct-align/1ltaC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1ltaC/nostruct-align/1ltaC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23368/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.501587
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lt3A
id: 1lt3A   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lt3A/nostruct-align/1lt3A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lt3A/nostruct-align/1lt3A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lt3A/nostruct-align/1lt3A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14193/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.069580
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lre
id: 1lre   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lre/nostruct-align/1lre.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lre/nostruct-align/1lre.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lre/nostruct-align/1lre.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8461/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.053711
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ljrA
id: 1ljrA   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1ljrA/nostruct-align/1ljrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1ljrA/nostruct-align/1ljrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1ljrA/nostruct-align/1ljrA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14993/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.925537
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1igtB
id: 1igtB   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1igtB/nostruct-align/1igtB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1igtB/nostruct-align/1igtB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1igtB/nostruct-align/1igtB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15275/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.100586
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lbd
id: 1lbd   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lbd/nostruct-align/1lbd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lbd/nostruct-align/1lbd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lbd/nostruct-align/1lbd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12636/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.678589
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mbe
id: 1mbe   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mbe/nostruct-align/1mbe.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mbe/nostruct-align/1mbe.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mbe/nostruct-align/1mbe.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13959/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.597656
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lywA
id: 1lywA   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lywA/nostruct-align/1lywA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lywA/nostruct-align/1lywA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lywA/nostruct-align/1lywA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-504/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.180542
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mhlA
id: 1mhlA   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mhlA/nostruct-align/1mhlA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mhlA/nostruct-align/1mhlA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mhlA/nostruct-align/1mhlA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29336/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.980591
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lyp
id: 1lyp   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lyp/nostruct-align/1lyp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lyp/nostruct-align/1lyp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lyp/nostruct-align/1lyp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10229/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.140625
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mhdA
id: 1mhdA   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mhdA/nostruct-align/1mhdA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mhdA/nostruct-align/1mhdA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mhdA/nostruct-align/1mhdA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6321/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.663696
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mjoA
id: 1mjoA   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mjoA/nostruct-align/1mjoA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mjoA/nostruct-align/1mjoA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mjoA/nostruct-align/1mjoA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-eclipse-25248/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.557617
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mhu
id: 1mhu   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mhu/nostruct-align/1mhu.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mhu/nostruct-align/1mhu.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mhu/nostruct-align/1mhu.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24749/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.909546
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mjhA
id: 1mjhA   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mjhA/nostruct-align/1mjhA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mjhA/nostruct-align/1mjhA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mjhA/nostruct-align/1mjhA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14231/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.928589
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mhlC
id: 1mhlC   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mhlC/nostruct-align/1mhlC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mhlC/nostruct-align/1mhlC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mhlC/nostruct-align/1mhlC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18797/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.360596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mfs
id: 1mfs   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mfs/nostruct-align/1mfs.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mfs/nostruct-align/1mfs.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mfs/nostruct-align/1mfs.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29947/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.626587
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ksiB
id: 1ksiB   alignment found: /projects/compbio/experiments/models.97/pdb/1k/1ksiB/nostruct-align/1ksiB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1k/1ksiB/nostruct-align/1ksiB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1k/1ksiB/nostruct-align/1ksiB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22015/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.677490
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mnmA
id: 1mnmA   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mnmA/nostruct-align/1mnmA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mnmA/nostruct-align/1mnmA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mnmA/nostruct-align/1mnmA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24448/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.560547
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mslA
id: 1mslA   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mslA/nostruct-align/1mslA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mslA/nostruct-align/1mslA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mslA/nostruct-align/1mslA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3632/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.783691
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mpyA
id: 1mpyA   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mpyA/nostruct-align/1mpyA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mpyA/nostruct-align/1mpyA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mpyA/nostruct-align/1mpyA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-514/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.564697
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ncs
id: 1ncs   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1ncs/nostruct-align/1ncs.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1ncs/nostruct-align/1ncs.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1ncs/nostruct-align/1ncs.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22674/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.518555
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nal3
id: 1nal3   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nal3/nostruct-align/1nal3.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nal3/nostruct-align/1nal3.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nal3/nostruct-align/1nal3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28555/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.047485
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mxb
id: 1mxb   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mxb/nostruct-align/1mxb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mxb/nostruct-align/1mxb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mxb/nostruct-align/1mxb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20020/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.268555
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lvk
id: 1lvk   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lvk/nostruct-align/1lvk.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lvk/nostruct-align/1lvk.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lvk/nostruct-align/1lvk.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21081/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.197632
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lla
id: 1lla   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lla/nostruct-align/1lla.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lla/nostruct-align/1lla.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lla/nostruct-align/1lla.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31537/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.174561
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lylA
id: 1lylA   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lylA/nostruct-align/1lylA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lylA/nostruct-align/1lylA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lylA/nostruct-align/1lylA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10638/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.742554
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lox
id: 1lox   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lox/nostruct-align/1lox.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lox/nostruct-align/1lox.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lox/nostruct-align/1lox.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16014/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.938599
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ile
id: 1ile   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ile/nostruct-align/1ile.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ile/nostruct-align/1ile.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1ile/nostruct-align/1ile.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10961/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.424683
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ndh
id: 1ndh   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1ndh/nostruct-align/1ndh.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1ndh/nostruct-align/1ndh.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1ndh/nostruct-align/1ndh.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31191/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.728638
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ncx
id: 1ncx   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1ncx/nostruct-align/1ncx.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1ncx/nostruct-align/1ncx.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1ncx/nostruct-align/1ncx.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4698/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.425659
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nedA
id: 1nedA   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nedA/nostruct-align/1nedA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nedA/nostruct-align/1nedA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nedA/nostruct-align/1nedA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29658/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.796631
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1new
id: 1new   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1new/nostruct-align/1new.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1new/nostruct-align/1new.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1new/nostruct-align/1new.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13065/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.468628
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ng1
id: 1ng1   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1ng1/nostruct-align/1ng1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1ng1/nostruct-align/1ng1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1ng1/nostruct-align/1ng1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18008/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.752686
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nglA
id: 1nglA   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nglA/nostruct-align/1nglA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nglA/nostruct-align/1nglA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nglA/nostruct-align/1nglA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9843/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.454590
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nkr
id: 1nkr   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nkr/nostruct-align/1nkr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nkr/nostruct-align/1nkr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nkr/nostruct-align/1nkr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-963/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.822632
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nf1A
id: 1nf1A   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nf1A/nostruct-align/1nf1A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nf1A/nostruct-align/1nf1A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nf1A/nostruct-align/1nf1A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15667/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.720581
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ntcA
id: 1ntcA   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1ntcA/nostruct-align/1ntcA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1ntcA/nostruct-align/1ntcA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1ntcA/nostruct-align/1ntcA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31450/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.613647
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nukA
id: 1nukA   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nukA/nostruct-align/1nukA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nukA/nostruct-align/1nukA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nukA/nostruct-align/1nukA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21558/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.151611
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lvl
id: 1lvl   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lvl/nostruct-align/1lvl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lvl/nostruct-align/1lvl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lvl/nostruct-align/1lvl.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2619/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.094604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ocrD
id: 1ocrD   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1ocrD/nostruct-align/1ocrD.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1ocrD/nostruct-align/1ocrD.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1ocrD/nostruct-align/1ocrD.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12863/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.886597
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1opp
id: 1opp   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1opp/nostruct-align/1opp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1opp/nostruct-align/1opp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1opp/nostruct-align/1opp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18078/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.207642
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mh1
id: 1mh1   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mh1/nostruct-align/1mh1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mh1/nostruct-align/1mh1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mh1/nostruct-align/1mh1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28588/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.229614
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1p32A
id: 1p32A   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1p32A/nostruct-align/1p32A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1p32A/nostruct-align/1p32A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1p32A/nostruct-align/1p32A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2584/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.614624
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pauB
id: 1pauB   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pauB/nostruct-align/1pauB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pauB/nostruct-align/1pauB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pauB/nostruct-align/1pauB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30427/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.626587
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pauA
id: 1pauA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pauA/nostruct-align/1pauA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pauA/nostruct-align/1pauA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pauA/nostruct-align/1pauA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27334/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.689575
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1npoA
id: 1npoA   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1npoA/nostruct-align/1npoA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1npoA/nostruct-align/1npoA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1npoA/nostruct-align/1npoA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29779/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.311646
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ounA
id: 1ounA   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1ounA/nostruct-align/1ounA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1ounA/nostruct-align/1ounA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1ounA/nostruct-align/1ounA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24742/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.390625
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1opc
id: 1opc   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1opc/nostruct-align/1opc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1opc/nostruct-align/1opc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1opc/nostruct-align/1opc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20222/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.611572
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pdkB
id: 1pdkB   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pdkB/nostruct-align/1pdkB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pdkB/nostruct-align/1pdkB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pdkB/nostruct-align/1pdkB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23402/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.277588
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pfiA
id: 1pfiA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pfiA/nostruct-align/1pfiA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pfiA/nostruct-align/1pfiA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pfiA/nostruct-align/1pfiA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14695/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.154663
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1othA
id: 1othA   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1othA/nostruct-align/1othA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1othA/nostruct-align/1othA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1othA/nostruct-align/1othA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29937/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.200684
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nstA
id: 1nstA   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nstA/nostruct-align/1nstA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nstA/nostruct-align/1nstA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nstA/nostruct-align/1nstA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19734/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.280640
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1p35A
id: 1p35A   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1p35A/nostruct-align/1p35A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1p35A/nostruct-align/1p35A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1p35A/nostruct-align/1p35A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22864/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.473633
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pd21
id: 1pd21   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pd21/nostruct-align/1pd21.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pd21/nostruct-align/1pd21.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pd21/nostruct-align/1pd21.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26063/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.529663
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1peh
id: 1peh   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1peh/nostruct-align/1peh.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1peh/nostruct-align/1peh.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1peh/nostruct-align/1peh.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24203/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.001587
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nubA
id: 1nubA   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nubA/nostruct-align/1nubA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nubA/nostruct-align/1nubA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nubA/nostruct-align/1nubA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29220/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.960571
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1otcA
id: 1otcA   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1otcA/nostruct-align/1otcA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1otcA/nostruct-align/1otcA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1otcA/nostruct-align/1otcA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21770/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.307617
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pi2
id: 1pi2   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pi2/nostruct-align/1pi2.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pi2/nostruct-align/1pi2.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pi2/nostruct-align/1pi2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19659/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.731689
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lci
id: 1lci   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lci/nostruct-align/1lci.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lci/nostruct-align/1lci.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lci/nostruct-align/1lci.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18066/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.469604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pdr
id: 1pdr   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pdr/nostruct-align/1pdr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pdr/nostruct-align/1pdr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pdr/nostruct-align/1pdr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27686/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.345581
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ocrC
id: 1ocrC   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1ocrC/nostruct-align/1ocrC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1ocrC/nostruct-align/1ocrC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1ocrC/nostruct-align/1ocrC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5255/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.215576
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pnbA
id: 1pnbA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pnbA/nostruct-align/1pnbA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pnbA/nostruct-align/1pnbA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pnbA/nostruct-align/1pnbA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10398/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.671509
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ponB
id: 1ponB   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1ponB/nostruct-align/1ponB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1ponB/nostruct-align/1ponB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1ponB/nostruct-align/1ponB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30784/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.850586
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1plq
id: 1plq   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1plq/nostruct-align/1plq.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1plq/nostruct-align/1plq.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1plq/nostruct-align/1plq.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11056/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.937622
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ppbL
id: 1ppbL   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1ppbL/nostruct-align/1ppbL.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1ppbL/nostruct-align/1ppbL.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1ppbL/nostruct-align/1ppbL.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16460/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.300537
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ponA
id: 1ponA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1ponA/nostruct-align/1ponA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1ponA/nostruct-align/1ponA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1ponA/nostruct-align/1ponA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30151/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.663574
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1preA
id: 1preA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1preA/nostruct-align/1preA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1preA/nostruct-align/1preA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1preA/nostruct-align/1preA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26274/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.616699
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pfo
id: 1pfo   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pfo/nostruct-align/1pfo.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pfo/nostruct-align/1pfo.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pfo/nostruct-align/1pfo.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19350/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.089600
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1poiB
id: 1poiB   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1poiB/nostruct-align/1poiB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1poiB/nostruct-align/1poiB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1poiB/nostruct-align/1poiB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12916/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.858521
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pru
id: 1pru   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pru/nostruct-align/1pru.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pru/nostruct-align/1pru.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pru/nostruct-align/1pru.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30340/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.509521
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pmaP
id: 1pmaP   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pmaP/nostruct-align/1pmaP.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pmaP/nostruct-align/1pmaP.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pmaP/nostruct-align/1pmaP.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5597/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.639648
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pmaA
id: 1pmaA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pmaA/nostruct-align/1pmaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pmaA/nostruct-align/1pmaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pmaA/nostruct-align/1pmaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4144/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.575562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pyaA
id: 1pyaA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pyaA/nostruct-align/1pyaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pyaA/nostruct-align/1pyaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pyaA/nostruct-align/1pyaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24586/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.789673
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pvl
id: 1pvl   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pvl/nostruct-align/1pvl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pvl/nostruct-align/1pvl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pvl/nostruct-align/1pvl.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19056/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.263550
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pytA
id: 1pytA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pytA/nostruct-align/1pytA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pytA/nostruct-align/1pytA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pytA/nostruct-align/1pytA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16143/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.620605
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1psm
id: 1psm   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1psm/nostruct-align/1psm.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1psm/nostruct-align/1psm.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1psm/nostruct-align/1psm.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5781/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.764648
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pyiA
id: 1pyiA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pyiA/nostruct-align/1pyiA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pyiA/nostruct-align/1pyiA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pyiA/nostruct-align/1pyiA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23122/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.784546
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pvc4
id: 1pvc4   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pvc4/nostruct-align/1pvc4.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pvc4/nostruct-align/1pvc4.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pvc4/nostruct-align/1pvc4.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8585/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.982544
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qa9A
id: 1qa9A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qa9A/nostruct-align/1qa9A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qa9A/nostruct-align/1qa9A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qa9A/nostruct-align/1qa9A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28445/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.271606
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qa5A
id: 1qa5A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qa5A/nostruct-align/1qa5A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qa5A/nostruct-align/1qa5A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qa5A/nostruct-align/1qa5A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16351/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.589600
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pjr
id: 1pjr   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pjr/nostruct-align/1pjr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pjr/nostruct-align/1pjr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pjr/nostruct-align/1pjr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11038/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.027588
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qa6A
id: 1qa6A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qa6A/nostruct-align/1qa6A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qa6A/nostruct-align/1qa6A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qa6A/nostruct-align/1qa6A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32278/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.356567
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qb2A
id: 1qb2A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qb2A/nostruct-align/1qb2A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qb2A/nostruct-align/1qb2A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qb2A/nostruct-align/1qb2A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27120/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.573608
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qauA
id: 1qauA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qauA/nostruct-align/1qauA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qauA/nostruct-align/1qauA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qauA/nostruct-align/1qauA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6614/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.281616
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qa4A
id: 1qa4A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qa4A/nostruct-align/1qa4A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qa4A/nostruct-align/1qa4A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qa4A/nostruct-align/1qa4A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16539/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.589600
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qbeA
id: 1qbeA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qbeA/nostruct-align/1qbeA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qbeA/nostruct-align/1qbeA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qbeA/nostruct-align/1qbeA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19865/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.256592
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qaeA
id: 1qaeA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qaeA/nostruct-align/1qaeA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qaeA/nostruct-align/1qaeA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qaeA/nostruct-align/1qaeA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25891/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.532593
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qbhA
id: 1qbhA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qbhA/nostruct-align/1qbhA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qbhA/nostruct-align/1qbhA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qbhA/nostruct-align/1qbhA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-851/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.309570
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qadA
id: 1qadA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qadA/nostruct-align/1qadA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qadA/nostruct-align/1qadA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qadA/nostruct-align/1qadA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3686/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.390625
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qc7A
id: 1qc7A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qc7A/nostruct-align/1qc7A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qc7A/nostruct-align/1qc7A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qc7A/nostruct-align/1qc7A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3410/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.312500
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qckA
id: 1qckA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qckA/nostruct-align/1qckA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qckA/nostruct-align/1qckA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qckA/nostruct-align/1qckA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20815/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.488525
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qbjA
id: 1qbjA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qbjA/nostruct-align/1qbjA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qbjA/nostruct-align/1qbjA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qbjA/nostruct-align/1qbjA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14523/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.158691
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qcrD
id: 1qcrD   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qcrD/nostruct-align/1qcrD.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qcrD/nostruct-align/1qcrD.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qcrD/nostruct-align/1qcrD.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5536/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.923706
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qcsA
id: 1qcsA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qcsA/nostruct-align/1qcsA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qcsA/nostruct-align/1qcsA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qcsA/nostruct-align/1qcsA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2044/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.263550
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qczA
id: 1qczA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qczA/nostruct-align/1qczA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qczA/nostruct-align/1qczA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qczA/nostruct-align/1qczA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13359/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.923584
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ordA
id: 1ordA   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1ordA/nostruct-align/1ordA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1ordA/nostruct-align/1ordA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1ordA/nostruct-align/1ordA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31949/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.331543
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qbzC
id: 1qbzC   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qbzC/nostruct-align/1qbzC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qbzC/nostruct-align/1qbzC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qbzC/nostruct-align/1qbzC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23110/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.033569
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qdbA
id: 1qdbA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qdbA/nostruct-align/1qdbA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qdbA/nostruct-align/1qdbA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qdbA/nostruct-align/1qdbA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14270/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.013550
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qfdA
id: 1qfdA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qfdA/nostruct-align/1qfdA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qfdA/nostruct-align/1qfdA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qfdA/nostruct-align/1qfdA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21527/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.485596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qexA
id: 1qexA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qexA/nostruct-align/1qexA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qexA/nostruct-align/1qexA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qexA/nostruct-align/1qexA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25748/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.827637
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qaxA
id: 1qaxA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qaxA/nostruct-align/1qaxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qaxA/nostruct-align/1qaxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qaxA/nostruct-align/1qaxA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28528/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.279541
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qd5A
id: 1qd5A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qd5A/nostruct-align/1qd5A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qd5A/nostruct-align/1qd5A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qd5A/nostruct-align/1qd5A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19017/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.296509
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qeyA
id: 1qeyA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qeyA/nostruct-align/1qeyA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qeyA/nostruct-align/1qeyA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qeyA/nostruct-align/1qeyA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21359/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.698608
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qdlB
id: 1qdlB   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qdlB/nostruct-align/1qdlB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qdlB/nostruct-align/1qdlB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qdlB/nostruct-align/1qdlB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25476/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.784546
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pmd
id: 1pmd   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pmd/nostruct-align/1pmd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pmd/nostruct-align/1pmd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pmd/nostruct-align/1pmd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22397/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.689575
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qfhA
id: 1qfhA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qfhA/nostruct-align/1qfhA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qfhA/nostruct-align/1qfhA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qfhA/nostruct-align/1qfhA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21915/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.752686
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pedA
id: 1pedA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pedA/nostruct-align/1pedA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pedA/nostruct-align/1pedA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pedA/nostruct-align/1pedA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8953/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.860596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qfjA
id: 1qfjA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qfjA/nostruct-align/1qfjA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qfjA/nostruct-align/1qfjA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qfjA/nostruct-align/1qfjA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24119/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.368652
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qgiA
id: 1qgiA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qgiA/nostruct-align/1qgiA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qgiA/nostruct-align/1qgiA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qgiA/nostruct-align/1qgiA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10802/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.663696
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1phd
id: 1phd   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1phd/nostruct-align/1phd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1phd/nostruct-align/1phd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1phd/nostruct-align/1phd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30407/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.315552
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qfoA
id: 1qfoA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qfoA/nostruct-align/1qfoA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qfoA/nostruct-align/1qfoA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qfoA/nostruct-align/1qfoA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11073/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.353638
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qgoA
id: 1qgoA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qgoA/nostruct-align/1qgoA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qgoA/nostruct-align/1qgoA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qgoA/nostruct-align/1qgoA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6066/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.184692
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qhkA
id: 1qhkA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qhkA/nostruct-align/1qhkA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qhkA/nostruct-align/1qhkA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qhkA/nostruct-align/1qhkA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29441/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.079590
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qgkB
id: 1qgkB   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qgkB/nostruct-align/1qgkB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qgkB/nostruct-align/1qgkB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qgkB/nostruct-align/1qgkB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5599/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.355591
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qhiA
id: 1qhiA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qhiA/nostruct-align/1qhiA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qhiA/nostruct-align/1qhiA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qhiA/nostruct-align/1qhiA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12376/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.415649
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qh5A
id: 1qh5A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qh5A/nostruct-align/1qh5A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qh5A/nostruct-align/1qh5A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qh5A/nostruct-align/1qh5A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3988/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.655640
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qdlA
id: 1qdlA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qdlA/nostruct-align/1qdlA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qdlA/nostruct-align/1qdlA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qdlA/nostruct-align/1qdlA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10803/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.838501
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qhaA
id: 1qhaA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qhaA/nostruct-align/1qhaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qhaA/nostruct-align/1qhaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qhaA/nostruct-align/1qhaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15540/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.133667
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qg3A
id: 1qg3A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qg3A/nostruct-align/1qg3A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qg3A/nostruct-align/1qg3A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qg3A/nostruct-align/1qg3A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18373/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.028564
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qguB
id: 1qguB   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qguB/nostruct-align/1qguB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qguB/nostruct-align/1qguB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qguB/nostruct-align/1qguB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32364/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.568604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pysB
id: 1pysB   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pysB/nostruct-align/1pysB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pysB/nostruct-align/1pysB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pysB/nostruct-align/1pysB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31661/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.171509
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qgtA
id: 1qgtA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qgtA/nostruct-align/1qgtA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qgtA/nostruct-align/1qgtA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qgtA/nostruct-align/1qgtA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23356/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.137573
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qk7A
id: 1qk7A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qk7A/nostruct-align/1qk7A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qk7A/nostruct-align/1qk7A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qk7A/nostruct-align/1qk7A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23633/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.523682
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qj8A
id: 1qj8A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qj8A/nostruct-align/1qj8A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qj8A/nostruct-align/1qj8A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qj8A/nostruct-align/1qj8A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29656/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.458496
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qhvA
id: 1qhvA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qhvA/nostruct-align/1qhvA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qhvA/nostruct-align/1qhvA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qhvA/nostruct-align/1qhvA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12166/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.095703
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qkfA
id: 1qkfA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qkfA/nostruct-align/1qkfA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qkfA/nostruct-align/1qkfA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qkfA/nostruct-align/1qkfA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2355/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.709595
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qk9A
id: 1qk9A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qk9A/nostruct-align/1qk9A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qk9A/nostruct-align/1qk9A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qk9A/nostruct-align/1qk9A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2188/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.709595
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qk6A
id: 1qk6A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qk6A/nostruct-align/1qk6A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qk6A/nostruct-align/1qk6A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qk6A/nostruct-align/1qk6A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16735/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.097656
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qj4A
id: 1qj4A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qj4A/nostruct-align/1qj4A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qj4A/nostruct-align/1qj4A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qj4A/nostruct-align/1qj4A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21619/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.058594
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qhlA
id: 1qhlA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qhlA/nostruct-align/1qhlA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qhlA/nostruct-align/1qhlA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qhlA/nostruct-align/1qhlA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10431/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.848633
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qli
id: 1qli   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qli/nostruct-align/1qli.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qli/nostruct-align/1qli.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qli/nostruct-align/1qli.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20907/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.057617
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qjkA
id: 1qjkA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qjkA/nostruct-align/1qjkA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qjkA/nostruct-align/1qjkA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qjkA/nostruct-align/1qjkA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12559/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.104614
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qklA
id: 1qklA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qklA/nostruct-align/1qklA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qklA/nostruct-align/1qklA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qklA/nostruct-align/1qklA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19041/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.577515
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qk3A
id: 1qk3A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qk3A/nostruct-align/1qk3A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qk3A/nostruct-align/1qk3A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qk3A/nostruct-align/1qk3A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2479/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.797607
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qj2A
id: 1qj2A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qj2A/nostruct-align/1qj2A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qj2A/nostruct-align/1qj2A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qj2A/nostruct-align/1qj2A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6192/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.283691
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qgrA
id: 1qgrA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qgrA/nostruct-align/1qgrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qgrA/nostruct-align/1qgrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qgrA/nostruct-align/1qgrA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26634/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.101685
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qp6A
id: 1qp6A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qp6A/nostruct-align/1qp6A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qp6A/nostruct-align/1qp6A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qp6A/nostruct-align/1qp6A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21104/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.896606
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qpmA
id: 1qpmA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qpmA/nostruct-align/1qpmA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qpmA/nostruct-align/1qpmA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qpmA/nostruct-align/1qpmA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18191/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.384644
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qpxA
id: 1qpxA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qpxA/nostruct-align/1qpxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qpxA/nostruct-align/1qpxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qpxA/nostruct-align/1qpxA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7829/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.977539
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qjaA
id: 1qjaA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qjaA/nostruct-align/1qjaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qjaA/nostruct-align/1qjaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qjaA/nostruct-align/1qjaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25170/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.588623
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qpoA
id: 1qpoA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qpoA/nostruct-align/1qpoA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qpoA/nostruct-align/1qpoA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qpoA/nostruct-align/1qpoA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29476/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.263672
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qhuA
id: 1qhuA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qhuA/nostruct-align/1qhuA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qhuA/nostruct-align/1qhuA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qhuA/nostruct-align/1qhuA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27722/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.736694
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qlmA
id: 1qlmA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qlmA/nostruct-align/1qlmA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qlmA/nostruct-align/1qlmA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qlmA/nostruct-align/1qlmA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11910/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.605591
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qq5A
id: 1qq5A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qq5A/nostruct-align/1qq5A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qq5A/nostruct-align/1qq5A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qq5A/nostruct-align/1qq5A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12872/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.822510
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qq2A
id: 1qq2A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qq2A/nostruct-align/1qq2A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qq2A/nostruct-align/1qq2A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qq2A/nostruct-align/1qq2A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24786/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.888672
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qq8A
id: 1qq8A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qq8A/nostruct-align/1qq8A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qq8A/nostruct-align/1qq8A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qq8A/nostruct-align/1qq8A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23676/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.745605
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qj2C
id: 1qj2C   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qj2C/nostruct-align/1qj2C.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qj2C/nostruct-align/1qj2C.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qj2C/nostruct-align/1qj2C.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30114/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.081665
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qpzA
id: 1qpzA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qpzA/nostruct-align/1qpzA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qpzA/nostruct-align/1qpzA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qpzA/nostruct-align/1qpzA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21034/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.499634
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qltA
id: 1qltA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qltA/nostruct-align/1qltA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qltA/nostruct-align/1qltA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qltA/nostruct-align/1qltA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25162/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.543579
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qp8A
id: 1qp8A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qp8A/nostruct-align/1qp8A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qp8A/nostruct-align/1qp8A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qp8A/nostruct-align/1qp8A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4765/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.162598
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qqrA
id: 1qqrA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qqrA/nostruct-align/1qqrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qqrA/nostruct-align/1qqrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qqrA/nostruct-align/1qqrA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31779/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.437622
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qqgA
id: 1qqgA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qqgA/nostruct-align/1qqgA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qqgA/nostruct-align/1qqgA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qqgA/nostruct-align/1qqgA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20717/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.232544
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qr7A
id: 1qr7A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qr7A/nostruct-align/1qr7A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qr7A/nostruct-align/1qr7A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qr7A/nostruct-align/1qr7A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2084/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.950684
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qspA
id: 1qspA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qspA/nostruct-align/1qspA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qspA/nostruct-align/1qspA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qspA/nostruct-align/1qspA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4488/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.805664
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qqeA
id: 1qqeA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qqeA/nostruct-align/1qqeA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qqeA/nostruct-align/1qqeA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qqeA/nostruct-align/1qqeA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1260/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.248535
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qqhA
id: 1qqhA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qqhA/nostruct-align/1qqhA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qqhA/nostruct-align/1qqhA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qqhA/nostruct-align/1qqhA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28836/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.076538
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qrjB
id: 1qrjB   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qrjB/nostruct-align/1qrjB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qrjB/nostruct-align/1qrjB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qrjB/nostruct-align/1qrjB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7970/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.916626
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1quqA
id: 1quqA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1quqA/nostruct-align/1quqA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1quqA/nostruct-align/1quqA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1quqA/nostruct-align/1quqA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21787/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.336670
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1quqB
id: 1quqB   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1quqB/nostruct-align/1quqB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1quqB/nostruct-align/1quqB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1quqB/nostruct-align/1quqB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6993/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.294678
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qrqA
id: 1qrqA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qrqA/nostruct-align/1qrqA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qrqA/nostruct-align/1qrqA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qrqA/nostruct-align/1qrqA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4627/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.492554
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1r2aA
id: 1r2aA   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1r2aA/nostruct-align/1r2aA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1r2aA/nostruct-align/1r2aA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1r2aA/nostruct-align/1r2aA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8465/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.144653
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qr6A
id: 1qr6A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qr6A/nostruct-align/1qr6A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qr6A/nostruct-align/1qr6A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qr6A/nostruct-align/1qr6A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25442/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.034546
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qumA
id: 1qumA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qumA/nostruct-align/1qumA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qumA/nostruct-align/1qumA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qumA/nostruct-align/1qumA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9589/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.240601
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1r2fA
id: 1r2fA   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1r2fA/nostruct-align/1r2fA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1r2fA/nostruct-align/1r2fA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1r2fA/nostruct-align/1r2fA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12650/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.757568
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qf6A
id: 1qf6A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qf6A/nostruct-align/1qf6A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qf6A/nostruct-align/1qf6A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qf6A/nostruct-align/1qf6A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23634/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.014526
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rcb
id: 1rcb   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rcb/nostruct-align/1rcb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rcb/nostruct-align/1rcb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rcb/nostruct-align/1rcb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15262/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.468628
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1quuA
id: 1quuA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1quuA/nostruct-align/1quuA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1quuA/nostruct-align/1quuA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1quuA/nostruct-align/1quuA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17797/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.926636
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1poxA
id: 1poxA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1poxA/nostruct-align/1poxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1poxA/nostruct-align/1poxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1poxA/nostruct-align/1poxA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1786/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.545654
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qrrA
id: 1qrrA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qrrA/nostruct-align/1qrrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qrrA/nostruct-align/1qrrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qrrA/nostruct-align/1qrrA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8709/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.321655
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rboC
id: 1rboC   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rboC/nostruct-align/1rboC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rboC/nostruct-align/1rboC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rboC/nostruct-align/1rboC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30563/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.321655
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qguA
id: 1qguA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qguA/nostruct-align/1qguA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qguA/nostruct-align/1qguA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qguA/nostruct-align/1qguA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3788/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.632690
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qtrA
id: 1qtrA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qtrA/nostruct-align/1qtrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qtrA/nostruct-align/1qtrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qtrA/nostruct-align/1qtrA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24318/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.341553
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rhoA
id: 1rhoA   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rhoA/nostruct-align/1rhoA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rhoA/nostruct-align/1rhoA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rhoA/nostruct-align/1rhoA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11157/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.095581
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qj2B
id: 1qj2B   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qj2B/nostruct-align/1qj2B.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qj2B/nostruct-align/1qj2B.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qj2B/nostruct-align/1qj2B.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4878/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.151611
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rl2A
id: 1rl2A   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rl2A/nostruct-align/1rl2A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rl2A/nostruct-align/1rl2A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rl2A/nostruct-align/1rl2A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5752/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.031494
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qr4B
id: 1qr4B   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qr4B/nostruct-align/1qr4B.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qr4B/nostruct-align/1qr4B.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qr4B/nostruct-align/1qr4B.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22981/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.895508
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ron
id: 1ron   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1ron/nostruct-align/1ron.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1ron/nostruct-align/1ron.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1ron/nostruct-align/1ron.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27462/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.196655
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qs0B
id: 1qs0B   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qs0B/nostruct-align/1qs0B.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qs0B/nostruct-align/1qs0B.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qs0B/nostruct-align/1qs0B.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1189/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.958618
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rmvA
id: 1rmvA   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rmvA/nostruct-align/1rmvA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rmvA/nostruct-align/1rmvA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rmvA/nostruct-align/1rmvA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32483/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.717651
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rdr
id: 1rdr   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rdr/nostruct-align/1rdr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rdr/nostruct-align/1rdr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rdr/nostruct-align/1rdr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16887/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.727661
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rh2F
id: 1rh2F   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rh2F/nostruct-align/1rh2F.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rh2F/nostruct-align/1rh2F.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rh2F/nostruct-align/1rh2F.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24377/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.990601
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qs0A
id: 1qs0A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qs0A/nostruct-align/1qs0A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qs0A/nostruct-align/1qs0A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qs0A/nostruct-align/1qs0A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22146/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.210571
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1reqB
id: 1reqB   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1reqB/nostruct-align/1reqB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1reqB/nostruct-align/1reqB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1reqB/nostruct-align/1reqB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10000/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.235596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qubA
id: 1qubA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qubA/nostruct-align/1qubA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qubA/nostruct-align/1qubA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qubA/nostruct-align/1qubA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1692/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.203613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qvbA
id: 1qvbA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qvbA/nostruct-align/1qvbA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qvbA/nostruct-align/1qvbA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qvbA/nostruct-align/1qvbA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18234/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.595581
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rvv1
id: 1rvv1   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rvv1/nostruct-align/1rvv1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rvv1/nostruct-align/1rvv1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rvv1/nostruct-align/1rvv1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16043/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.997559
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rrpB
id: 1rrpB   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rrpB/nostruct-align/1rrpB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rrpB/nostruct-align/1rrpB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rrpB/nostruct-align/1rrpB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25757/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.227661
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1reqA
id: 1reqA   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1reqA/nostruct-align/1reqA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1reqA/nostruct-align/1reqA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1reqA/nostruct-align/1reqA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19370/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.624634
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rypD
id: 1rypD   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rypD/nostruct-align/1rypD.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rypD/nostruct-align/1rypD.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rypD/nostruct-align/1rypD.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7013/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.802612
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sayA
id: 1sayA   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sayA/nostruct-align/1sayA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sayA/nostruct-align/1sayA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sayA/nostruct-align/1sayA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18155/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.034546
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rypB
id: 1rypB   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rypB/nostruct-align/1rypB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rypB/nostruct-align/1rypB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rypB/nostruct-align/1rypB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9726/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.705566
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qu2A
id: 1qu2A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qu2A/nostruct-align/1qu2A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qu2A/nostruct-align/1qu2A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qu2A/nostruct-align/1qu2A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29187/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.843628
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fmk
id: 1fmk   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fmk/nostruct-align/1fmk.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fmk/nostruct-align/1fmk.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fmk/nostruct-align/1fmk.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4768/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.636597
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rypC
id: 1rypC   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rypC/nostruct-align/1rypC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rypC/nostruct-align/1rypC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rypC/nostruct-align/1rypC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15736/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.468628
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rtm1
id: 1rtm1   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rtm1/nostruct-align/1rtm1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rtm1/nostruct-align/1rtm1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rtm1/nostruct-align/1rtm1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18267/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.989624
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1seiA
id: 1seiA   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1seiA/nostruct-align/1seiA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1seiA/nostruct-align/1seiA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1seiA/nostruct-align/1seiA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21900/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.158691
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sfcA
id: 1sfcA   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sfcA/nostruct-align/1sfcA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sfcA/nostruct-align/1sfcA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sfcA/nostruct-align/1sfcA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14486/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.003662
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sco
id: 1sco   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sco/nostruct-align/1sco.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sco/nostruct-align/1sco.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sco/nostruct-align/1sco.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20558/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.868530
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rypE
id: 1rypE   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rypE/nostruct-align/1rypE.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rypE/nostruct-align/1rypE.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rypE/nostruct-align/1rypE.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3348/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.986572
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1shsA
id: 1shsA   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1shsA/nostruct-align/1shsA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1shsA/nostruct-align/1shsA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1shsA/nostruct-align/1shsA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26028/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.129517
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sis
id: 1sis   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sis/nostruct-align/1sis.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sis/nostruct-align/1sis.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sis/nostruct-align/1sis.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3565/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.062622
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sknP
id: 1sknP   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sknP/nostruct-align/1sknP.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sknP/nostruct-align/1sknP.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sknP/nostruct-align/1sknP.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-263/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.164673
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1smtA
id: 1smtA   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1smtA/nostruct-align/1smtA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1smtA/nostruct-align/1smtA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1smtA/nostruct-align/1smtA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27006/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.402588
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1spf
id: 1spf   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1spf/nostruct-align/1spf.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1spf/nostruct-align/1spf.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1spf/nostruct-align/1spf.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27323/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.572632
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rlr
id: 1rlr   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rlr/nostruct-align/1rlr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rlr/nostruct-align/1rlr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rlr/nostruct-align/1rlr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30550/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.627563
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sro
id: 1sro   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sro/nostruct-align/1sro.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sro/nostruct-align/1sro.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sro/nostruct-align/1sro.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27024/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.385498
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sek
id: 1sek   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sek/nostruct-align/1sek.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sek/nostruct-align/1sek.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sek/nostruct-align/1sek.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23009/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.475586
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sfcC
id: 1sfcC   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sfcC/nostruct-align/1sfcC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sfcC/nostruct-align/1sfcC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sfcC/nostruct-align/1sfcC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20814/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.966553
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1swuA
id: 1swuA   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1swuA/nostruct-align/1swuA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1swuA/nostruct-align/1swuA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1swuA/nostruct-align/1swuA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7060/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.281616
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tac
id: 1tac   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tac/nostruct-align/1tac.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tac/nostruct-align/1tac.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tac/nostruct-align/1tac.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20494/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.583618
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1szt
id: 1szt   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1szt/nostruct-align/1szt.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1szt/nostruct-align/1szt.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1szt/nostruct-align/1szt.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22389/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.014526
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1snc
id: 1snc   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1snc/nostruct-align/1snc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1snc/nostruct-align/1snc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1snc/nostruct-align/1snc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31072/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.976562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tbrR
id: 1tbrR   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tbrR/nostruct-align/1tbrR.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tbrR/nostruct-align/1tbrR.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tbrR/nostruct-align/1tbrR.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29957/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.467651
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tbgE
id: 1tbgE   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tbgE/nostruct-align/1tbgE.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tbgE/nostruct-align/1tbgE.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tbgE/nostruct-align/1tbgE.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1415/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.703613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tbaA
id: 1tbaA   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tbaA/nostruct-align/1tbaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tbaA/nostruct-align/1tbaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tbaA/nostruct-align/1tbaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29493/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.234619
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1smlA
id: 1smlA   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1smlA/nostruct-align/1smlA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1smlA/nostruct-align/1smlA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1smlA/nostruct-align/1smlA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3049/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.409546
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1srrA
id: 1srrA   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1srrA/nostruct-align/1srrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1srrA/nostruct-align/1srrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1srrA/nostruct-align/1srrA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-976/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.700562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1skf
id: 1skf   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1skf/nostruct-align/1skf.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1skf/nostruct-align/1skf.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1skf/nostruct-align/1skf.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29821/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.844604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1taxA
id: 1taxA   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1taxA/nostruct-align/1taxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1taxA/nostruct-align/1taxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1taxA/nostruct-align/1taxA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13132/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.487549
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qbkB
id: 1qbkB   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qbkB/nostruct-align/1qbkB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qbkB/nostruct-align/1qbkB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qbkB/nostruct-align/1qbkB.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9121/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.966553
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1quvA
id: 1quvA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1quvA/nostruct-align/1quvA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1quvA/nostruct-align/1quvA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1quvA/nostruct-align/1quvA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14714/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.848511
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tmf4
id: 1tmf4   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tmf4/nostruct-align/1tmf4.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tmf4/nostruct-align/1tmf4.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tmf4/nostruct-align/1tmf4.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27594/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.651611
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tc1A
id: 1tc1A   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tc1A/nostruct-align/1tc1A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tc1A/nostruct-align/1tc1A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tc1A/nostruct-align/1tc1A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5256/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.176636
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tiiC
id: 1tiiC   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tiiC/nostruct-align/1tiiC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tiiC/nostruct-align/1tiiC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tiiC/nostruct-align/1tiiC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19220/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.271606
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tuc
id: 1tuc   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tuc/nostruct-align/1tuc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tuc/nostruct-align/1tuc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tuc/nostruct-align/1tuc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20149/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.358643
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tocR
id: 1tocR   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tocR/nostruct-align/1tocR.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tocR/nostruct-align/1tocR.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tocR/nostruct-align/1tocR.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22317/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.581665
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tvt
id: 1tvt   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tvt/nostruct-align/1tvt.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tvt/nostruct-align/1tvt.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tvt/nostruct-align/1tvt.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28983/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.379639
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tvs
id: 1tvs   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tvs/nostruct-align/1tvs.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tvs/nostruct-align/1tvs.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tvs/nostruct-align/1tvs.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14299/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.379639
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1u2fA
id: 1u2fA   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1u2fA/nostruct-align/1u2fA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1u2fA/nostruct-align/1u2fA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1u2fA/nostruct-align/1u2fA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12752/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.556519
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tud
id: 1tud   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tud/nostruct-align/1tud.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tud/nostruct-align/1tud.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tud/nostruct-align/1tud.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5588/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.059570
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1uba
id: 1uba   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uba/nostruct-align/1uba.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uba/nostruct-align/1uba.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1uba/nostruct-align/1uba.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5457/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.611694
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1txb
id: 1txb   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1txb/nostruct-align/1txb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1txb/nostruct-align/1txb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1txb/nostruct-align/1txb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-955/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.778564
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1umuA
id: 1umuA   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1umuA/nostruct-align/1umuA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1umuA/nostruct-align/1umuA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1umuA/nostruct-align/1umuA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29761/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.868530
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tpg
id: 1tpg   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tpg/nostruct-align/1tpg.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tpg/nostruct-align/1tpg.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tpg/nostruct-align/1tpg.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30234/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.786621
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sw6A
id: 1sw6A   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sw6A/nostruct-align/1sw6A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sw6A/nostruct-align/1sw6A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sw6A/nostruct-align/1sw6A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29975/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.947632
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ulo
id: 1ulo   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1ulo/nostruct-align/1ulo.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1ulo/nostruct-align/1ulo.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1ulo/nostruct-align/1ulo.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17518/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.524658
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tfa
id: 1tfa   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tfa/nostruct-align/1tfa.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tfa/nostruct-align/1tfa.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tfa/nostruct-align/1tfa.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7462/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.023560
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sesA
id: 1sesA   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sesA/nostruct-align/1sesA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sesA/nostruct-align/1sesA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sesA/nostruct-align/1sesA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30043/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.509644
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1theB
id: 1theB   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1theB/nostruct-align/1theB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1theB/nostruct-align/1theB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1theB/nostruct-align/1theB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17700/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.568604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1taq
id: 1taq   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1taq/nostruct-align/1taq.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1taq/nostruct-align/1taq.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1taq/nostruct-align/1taq.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29111/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.229614
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1uby
id: 1uby   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uby/nostruct-align/1uby.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uby/nostruct-align/1uby.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1uby/nostruct-align/1uby.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27188/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.358643
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tdj
id: 1tdj   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tdj/nostruct-align/1tdj.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tdj/nostruct-align/1tdj.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tdj/nostruct-align/1tdj.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20560/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.484497
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tubA
id: 1tubA   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tubA/nostruct-align/1tubA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tubA/nostruct-align/1tubA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tubA/nostruct-align/1tubA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24688/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.200562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1t7pA
id: 1t7pA   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1t7pA/nostruct-align/1t7pA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1t7pA/nostruct-align/1t7pA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1t7pA/nostruct-align/1t7pA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15848/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.690674
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vsrA
id: 1vsrA   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vsrA/nostruct-align/1vsrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vsrA/nostruct-align/1vsrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vsrA/nostruct-align/1vsrA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30969/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.866577
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vpfA
id: 1vpfA   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vpfA/nostruct-align/1vpfA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vpfA/nostruct-align/1vpfA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vpfA/nostruct-align/1vpfA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26230/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.195557
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vib
id: 1vib   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vib/nostruct-align/1vib.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vib/nostruct-align/1vib.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vib/nostruct-align/1vib.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13666/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.316650
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vpu
id: 1vpu   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vpu/nostruct-align/1vpu.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vpu/nostruct-align/1vpu.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vpu/nostruct-align/1vpu.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15648/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.663574
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vii
id: 1vii   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vii/nostruct-align/1vii.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vii/nostruct-align/1vii.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vii/nostruct-align/1vii.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23340/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.075684
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vpc
id: 1vpc   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vpc/nostruct-align/1vpc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vpc/nostruct-align/1vpc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vpc/nostruct-align/1vpc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14341/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.593628
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1wgjA
id: 1wgjA   alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wgjA/nostruct-align/1wgjA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wgjA/nostruct-align/1wgjA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1w/1wgjA/nostruct-align/1wgjA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9792/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.255615
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1uxc
id: 1uxc   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uxc/nostruct-align/1uxc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uxc/nostruct-align/1uxc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1uxc/nostruct-align/1uxc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5092/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.623657
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vdeA
id: 1vdeA   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vdeA/nostruct-align/1vdeA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vdeA/nostruct-align/1vdeA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vdeA/nostruct-align/1vdeA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26732/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.669556
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vdrA
id: 1vdrA   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vdrA/nostruct-align/1vdrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vdrA/nostruct-align/1vdrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vdrA/nostruct-align/1vdrA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4533/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.838501
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1xdtR
id: 1xdtR   alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xdtR/nostruct-align/1xdtR.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xdtR/nostruct-align/1xdtR.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1x/1xdtR/nostruct-align/1xdtR.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16045/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.159546
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1uteA
id: 1uteA   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1uteA/nostruct-align/1uteA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1uteA/nostruct-align/1uteA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1uteA/nostruct-align/1uteA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28514/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.002686
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1xbd
id: 1xbd   alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xbd/nostruct-align/1xbd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xbd/nostruct-align/1xbd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1x/1xbd/nostruct-align/1xbd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12661/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.863647
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ytfB
id: 1ytfB   alignment found: /projects/compbio/experiments/models.97/pdb/1y/1ytfB/nostruct-align/1ytfB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1ytfB/nostruct-align/1ytfB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1y/1ytfB/nostruct-align/1ytfB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28930/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.436646
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tbgA
id: 1tbgA   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tbgA/nostruct-align/1tbgA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tbgA/nostruct-align/1tbgA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tbgA/nostruct-align/1tbgA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26706/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.190552
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1wod
id: 1wod   alignment found: /projects/compbio/experiments/models.97/pdb/1w/1wod/nostruct-align/1wod.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1w/1wod/nostruct-align/1wod.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1w/1wod/nostruct-align/1wod.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2450/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.891602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1xsm
id: 1xsm   alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xsm/nostruct-align/1xsm.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xsm/nostruct-align/1xsm.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1x/1xsm/nostruct-align/1xsm.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19873/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.564575
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1yer
id: 1yer   alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yer/nostruct-align/1yer.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yer/nostruct-align/1yer.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1y/1yer/nostruct-align/1yer.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13087/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.157593
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1x11A
id: 1x11A   alignment found: /projects/compbio/experiments/models.97/pdb/1x/1x11A/nostruct-align/1x11A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1x11A/nostruct-align/1x11A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1x/1x11A/nostruct-align/1x11A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12223/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.453613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1yua
id: 1yua   alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yua/nostruct-align/1yua.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yua/nostruct-align/1yua.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1y/1yua/nostruct-align/1yua.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27231/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.623535
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1xpa
id: 1xpa   alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xpa/nostruct-align/1xpa.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xpa/nostruct-align/1xpa.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1x/1xpa/nostruct-align/1xpa.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-804/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.366699
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1yuiA
id: 1yuiA   alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yuiA/nostruct-align/1yuiA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yuiA/nostruct-align/1yuiA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1y/1yuiA/nostruct-align/1yuiA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31818/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.671631
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1yagA
id: 1yagA   alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yagA/nostruct-align/1yagA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yagA/nostruct-align/1yagA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1y/1yagA/nostruct-align/1yagA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16006/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.897583
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2a3dA
id: 2a3dA   alignment found: /projects/compbio/experiments/models.97/pdb/2a/2a3dA/nostruct-align/2a3dA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2a3dA/nostruct-align/2a3dA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2a/2a3dA/nostruct-align/2a3dA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16968/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.131592
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1zto
id: 1zto   alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zto/nostruct-align/1zto.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zto/nostruct-align/1zto.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1z/1zto/nostruct-align/1zto.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28882/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.745605
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2bosA
id: 2bosA   alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bosA/nostruct-align/2bosA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bosA/nostruct-align/2bosA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2b/2bosA/nostruct-align/2bosA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17435/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.423584
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tf6A
id: 1tf6A   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tf6A/nostruct-align/1tf6A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tf6A/nostruct-align/1tf6A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tf6A/nostruct-align/1tf6A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17750/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.302612
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1zfd
id: 1zfd   alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zfd/nostruct-align/1zfd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zfd/nostruct-align/1zfd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1z/1zfd/nostruct-align/1zfd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2320/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.234619
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2af8
id: 2af8   alignment found: /projects/compbio/experiments/models.97/pdb/2a/2af8/nostruct-align/2af8.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2af8/nostruct-align/2af8.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2a/2af8/nostruct-align/2af8.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18285/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.658569
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2afp
id: 2afp   alignment found: /projects/compbio/experiments/models.97/pdb/2a/2afp/nostruct-align/2afp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2afp/nostruct-align/2afp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2a/2afp/nostruct-align/2afp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15487/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.523560
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1zeiA
id: 1zeiA   alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zeiA/nostruct-align/1zeiA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zeiA/nostruct-align/1zeiA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1z/1zeiA/nostruct-align/1zeiA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19054/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.651611
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2cps
id: 2cps   alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cps/nostruct-align/2cps.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cps/nostruct-align/2cps.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2c/2cps/nostruct-align/2cps.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4013/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.805664
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2cpb
id: 2cpb   alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cpb/nostruct-align/2cpb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cpb/nostruct-align/2cpb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2c/2cpb/nostruct-align/2cpb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28476/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.805664
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1zmeC
id: 1zmeC   alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zmeC/nostruct-align/1zmeC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zmeC/nostruct-align/1zmeC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1z/1zmeC/nostruct-align/1zmeC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28753/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.842651
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2cblA
id: 2cblA   alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cblA/nostruct-align/2cblA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cblA/nostruct-align/2cblA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2c/2cblA/nostruct-align/2cblA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2008/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.328613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2bpa3
id: 2bpa3   alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bpa3/nostruct-align/2bpa3.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bpa3/nostruct-align/2bpa3.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2b/2bpa3/nostruct-align/2bpa3.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17286/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.596680
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2eboA
id: 2eboA   alignment found: /projects/compbio/experiments/models.97/pdb/2e/2eboA/nostruct-align/2eboA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2eboA/nostruct-align/2eboA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2e/2eboA/nostruct-align/2eboA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7475/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.019653
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2cbh
id: 2cbh   alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cbh/nostruct-align/2cbh.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cbh/nostruct-align/2cbh.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2c/2cbh/nostruct-align/2cbh.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26513/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.681641
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ezk
id: 2ezk   alignment found: /projects/compbio/experiments/models.97/pdb/2e/2ezk/nostruct-align/2ezk.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2ezk/nostruct-align/2ezk.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2e/2ezk/nostruct-align/2ezk.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21855/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.434570
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1xvaA
id: 1xvaA   alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xvaA/nostruct-align/1xvaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xvaA/nostruct-align/1xvaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1x/1xvaA/nostruct-align/1xvaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26739/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.878540
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1zymA
id: 1zymA   alignment found: /projects/compbio/experiments/models.97/pdb/1z/1zymA/nostruct-align/1zymA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1z/1zymA/nostruct-align/1zymA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1z/1zymA/nostruct-align/1zymA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15551/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.942627
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2dgcA
id: 2dgcA   alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dgcA/nostruct-align/2dgcA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dgcA/nostruct-align/2dgcA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2d/2dgcA/nostruct-align/2dgcA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30252/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.261597
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ezh
id: 2ezh   alignment found: /projects/compbio/experiments/models.97/pdb/2e/2ezh/nostruct-align/2ezh.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2ezh/nostruct-align/2ezh.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2e/2ezh/nostruct-align/2ezh.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32200/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.568604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2admA
id: 2admA   alignment found: /projects/compbio/experiments/models.97/pdb/2a/2admA/nostruct-align/2admA.t99.a2m.gz
ScoreLibT99::make_wt_model: model file older than alignment: building /projects/compbio/experiments/models.97/pdb/2a/2admA/nostruct-align/2admA.t99-w0.5.mod from file /projects/compbio/experiments/models.97/pdb/2a/2admA/nostruct-align/2admA.t99.a2m.gz
Reading /projects/compbio/bin/scripts/sam-t99.conf

@@@@ chgrp protein /projects/compbio/tmp/tmp-build-weighted-model-beta-31410


@@@@ uniqueseq /projects/compbio/tmp/tmp-build-weighted-model-beta-31410/tmp -alignfile /projects/compbio/experiments/models.97/pdb/2a/2admA/nostruct-align/2admA.t99.a2m.gz \
    		-a protein -percent_id 0.8
SAM: uniqueseq v3.1b (February 24, 1999) compiled 04/18/00_11:44:50
Reading alignment file /projects/compbio/experiments/models.97/pdb/2a/2admA/nostruct-align/2admA.t99.a2m.gz (122 sequences, 386 columns) as A2M alignment.
Writing sequence output to /projects/compbio/tmp/tmp-build-weighted-model-beta-31410/tmp.a2m.
Dropping 1 (of 122) duplicate sequences with differing IDs
Dropping 24 (of 122) sequences with > 80.0% id
97 sequences left after dropping 25 of 122 sequences.


@@@@ modelfromalign /projects/compbio/tmp/tmp-build-weighted-model-beta-31410/tmp -alignfile /projects/compbio/tmp/tmp-build-weighted-model-beta-31410/tmp.a2m \
		-insert /projects/compbio/lib/fssp-trained.regularizer \
		-ins_jump_conf 1 \
		-match_jump_conf 1 \
		-del_jump_conf 1 \
		-prior_library /projects/compbio/lib/recode3.20comp \
		-binary_output 1  -a protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10
Reading parameter file /projects/compbio/lib/fssp-trained.regularizer
/projects/compbio/lib/fssp-trained.regularizer(1):  Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP
SAM: modelfromalign v3.1b (February 24, 1999) compiled 04/18/00_11:44:13
Reading alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-31410/tmp.a2m (97 sequences, 386 columns) as A2M alignment.


@@@@ cp -f /projects/compbio/tmp/tmp-build-weighted-model-beta-31410/tmp.mod /projects/compbio/experiments/models.97/pdb/2a/2admA/nostruct-align/2admA.t99-w0.5.mod


@@@@ rm -rf /projects/compbio/tmp/tmp-build-weighted-model-beta-31410 </dev/null
Reading /projects/compbio/bin/scripts/sam-t99.confReading parameter file /projects/compbio/experiments/models.97/pdb/2a/2admA/nostruct-align/2admA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2a/2admA/nostruct-align/2admA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-31410/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.202637
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2btvA
id: 2btvA   alignment found: /projects/compbio/experiments/models.97/pdb/2b/2btvA/nostruct-align/2btvA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2btvA/nostruct-align/2btvA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2b/2btvA/nostruct-align/2btvA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17710/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.659546
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2fmr
id: 2fmr   alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fmr/nostruct-align/2fmr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fmr/nostruct-align/2fmr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2f/2fmr/nostruct-align/2fmr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11141/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.065552
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2fokA
id: 2fokA   alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fokA/nostruct-align/2fokA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fokA/nostruct-align/2fokA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2f/2fokA/nostruct-align/2fokA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21791/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.245605
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2fnb
id: 2fnb   alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fnb/nostruct-align/2fnb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fnb/nostruct-align/2fnb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2f/2fnb/nostruct-align/2fnb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14969/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.079590
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2fua
id: 2fua   alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fua/nostruct-align/2fua.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fua/nostruct-align/2fua.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2f/2fua/nostruct-align/2fua.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5882/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.864624
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2gcc
id: 2gcc   alignment found: /projects/compbio/experiments/models.97/pdb/2g/2gcc/nostruct-align/2gcc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2g/2gcc/nostruct-align/2gcc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2g/2gcc/nostruct-align/2gcc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31330/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.430664
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2aop
id: 2aop   alignment found: /projects/compbio/experiments/models.97/pdb/2a/2aop/nostruct-align/2aop.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2aop/nostruct-align/2aop.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2a/2aop/nostruct-align/2aop.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6395/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.390503
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2gp8A
id: 2gp8A   alignment found: /projects/compbio/experiments/models.97/pdb/2g/2gp8A/nostruct-align/2gp8A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2g/2gp8A/nostruct-align/2gp8A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2g/2gp8A/nostruct-align/2gp8A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file ./tmp/tmp-build-weighted-model-alpha-29393/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.924683
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2gmfA
id: 2gmfA   alignment found: /projects/compbio/experiments/models.97/pdb/2g/2gmfA/nostruct-align/2gmfA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2g/2gmfA/nostruct-align/2gmfA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2g/2gmfA/nostruct-align/2gmfA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12848/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.711670
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2adr
id: 2adr   alignment found: /projects/compbio/experiments/models.97/pdb/2a/2adr/nostruct-align/2adr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2adr/nostruct-align/2adr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2a/2adr/nostruct-align/2adr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9730/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.687622
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2frvA
id: 2frvA   alignment found: /projects/compbio/experiments/models.97/pdb/2f/2frvA/nostruct-align/2frvA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2frvA/nostruct-align/2frvA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2f/2frvA/nostruct-align/2frvA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7001/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.065552
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2irfG
id: 2irfG   alignment found: /projects/compbio/experiments/models.97/pdb/2i/2irfG/nostruct-align/2irfG.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2i/2irfG/nostruct-align/2irfG.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2i/2irfG/nostruct-align/2irfG.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11863/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.356567
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2jhbA
id: 2jhbA   alignment found: /projects/compbio/experiments/models.97/pdb/2j/2jhbA/nostruct-align/2jhbA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2j/2jhbA/nostruct-align/2jhbA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2j/2jhbA/nostruct-align/2jhbA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4129/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.895630
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2fal
id: 2fal   alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fal/nostruct-align/2fal.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fal/nostruct-align/2fal.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2f/2fal/nostruct-align/2fal.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5285/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.684570
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2dln
id: 2dln   alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dln/nostruct-align/2dln.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dln/nostruct-align/2dln.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2d/2dln/nostruct-align/2dln.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5749/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.398560
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2if1
id: 2if1   alignment found: /projects/compbio/experiments/models.97/pdb/2i/2if1/nostruct-align/2if1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2i/2if1/nostruct-align/2if1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2i/2if1/nostruct-align/2if1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26736/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.266602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2hdhA
id: 2hdhA   alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hdhA/nostruct-align/2hdhA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hdhA/nostruct-align/2hdhA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2h/2hdhA/nostruct-align/2hdhA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11817/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.557495
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2frvB
id: 2frvB   alignment found: /projects/compbio/experiments/models.97/pdb/2f/2frvB/nostruct-align/2frvB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2frvB/nostruct-align/2frvB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2f/2frvB/nostruct-align/2frvB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13355/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.455566
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2mrb
id: 2mrb   alignment found: /projects/compbio/experiments/models.97/pdb/2m/2mrb/nostruct-align/2mrb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2mrb/nostruct-align/2mrb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2m/2mrb/nostruct-align/2mrb.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10170/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.998657
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2leu
id: 2leu   alignment found: /projects/compbio/experiments/models.97/pdb/2l/2leu/nostruct-align/2leu.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2leu/nostruct-align/2leu.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2l/2leu/nostruct-align/2leu.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22320/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.487549
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2mbr
id: 2mbr   alignment found: /projects/compbio/experiments/models.97/pdb/2m/2mbr/nostruct-align/2mbr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2mbr/nostruct-align/2mbr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2m/2mbr/nostruct-align/2mbr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5487/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.100586
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2gf1
id: 2gf1   alignment found: /projects/compbio/experiments/models.97/pdb/2g/2gf1/nostruct-align/2gf1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2g/2gf1/nostruct-align/2gf1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2g/2gf1/nostruct-align/2gf1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20766/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.251587
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2cas
id: 2cas   alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cas/nostruct-align/2cas.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cas/nostruct-align/2cas.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2c/2cas/nostruct-align/2cas.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22743/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.283569
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2occJ
id: 2occJ   alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occJ/nostruct-align/2occJ.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occJ/nostruct-align/2occJ.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2o/2occJ/nostruct-align/2occJ.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28600/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.174683
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2occI
id: 2occI   alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occI/nostruct-align/2occI.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occI/nostruct-align/2occI.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2o/2occI/nostruct-align/2occI.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12405/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.980591
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2occG
id: 2occG   alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occG/nostruct-align/2occG.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occG/nostruct-align/2occG.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2o/2occG/nostruct-align/2occG.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2028/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.372559
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ncm
id: 2ncm   alignment found: /projects/compbio/experiments/models.97/pdb/2n/2ncm/nostruct-align/2ncm.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2n/2ncm/nostruct-align/2ncm.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2n/2ncm/nostruct-align/2ncm.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20923/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.086670
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2nlrA
id: 2nlrA   alignment found: /projects/compbio/experiments/models.97/pdb/2n/2nlrA/nostruct-align/2nlrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2n/2nlrA/nostruct-align/2nlrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2n/2nlrA/nostruct-align/2nlrA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9953/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.751587
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2hgsA
id: 2hgsA   alignment found: /projects/compbio/experiments/models.97/pdb/2h/2hgsA/nostruct-align/2hgsA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2h/2hgsA/nostruct-align/2hgsA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2h/2hgsA/nostruct-align/2hgsA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27051/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.996582
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2pde
id: 2pde   alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pde/nostruct-align/2pde.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pde/nostruct-align/2pde.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2p/2pde/nostruct-align/2pde.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26655/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.988525
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2prgC
id: 2prgC   alignment found: /projects/compbio/experiments/models.97/pdb/2p/2prgC/nostruct-align/2prgC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2prgC/nostruct-align/2prgC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2p/2prgC/nostruct-align/2prgC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19685/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.856567
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2myo
id: 2myo   alignment found: /projects/compbio/experiments/models.97/pdb/2m/2myo/nostruct-align/2myo.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2m/2myo/nostruct-align/2myo.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2m/2myo/nostruct-align/2myo.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2272/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.080566
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2nllB
id: 2nllB   alignment found: /projects/compbio/experiments/models.97/pdb/2n/2nllB/nostruct-align/2nllB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2n/2nllB/nostruct-align/2nllB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2n/2nllB/nostruct-align/2nllB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32644/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.671509
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2occM
id: 2occM   alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occM/nostruct-align/2occM.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occM/nostruct-align/2occM.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2o/2occM/nostruct-align/2occM.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7444/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.637573
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2pta
id: 2pta   alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pta/nostruct-align/2pta.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pta/nostruct-align/2pta.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2p/2pta/nostruct-align/2pta.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11257/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.921509
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2occB
id: 2occB   alignment found: /projects/compbio/experiments/models.97/pdb/2o/2occB/nostruct-align/2occB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2occB/nostruct-align/2occB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2o/2occB/nostruct-align/2occB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30124/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.044678
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2gsaA
id: 2gsaA   alignment found: /projects/compbio/experiments/models.97/pdb/2g/2gsaA/nostruct-align/2gsaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2g/2gsaA/nostruct-align/2gsaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2g/2gsaA/nostruct-align/2gsaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13973/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.831543
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ovo
id: 2ovo   alignment found: /projects/compbio/experiments/models.97/pdb/2o/2ovo/nostruct-align/2ovo.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2o/2ovo/nostruct-align/2ovo.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2o/2ovo/nostruct-align/2ovo.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17970/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.827637
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2sivB
id: 2sivB   alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sivB/nostruct-align/2sivB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sivB/nostruct-align/2sivB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2s/2sivB/nostruct-align/2sivB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14677/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.863647
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2sivA
id: 2sivA   alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sivA/nostruct-align/2sivA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sivA/nostruct-align/2sivA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2s/2sivA/nostruct-align/2sivA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6592/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.695557
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2nadA
id: 2nadA   alignment found: /projects/compbio/experiments/models.97/pdb/2n/2nadA/nostruct-align/2nadA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2n/2nadA/nostruct-align/2nadA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2n/2nadA/nostruct-align/2nadA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29075/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.067627
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2gliA
id: 2gliA   alignment found: /projects/compbio/experiments/models.97/pdb/2g/2gliA/nostruct-align/2gliA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2g/2gliA/nostruct-align/2gliA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2g/2gliA/nostruct-align/2gliA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11909/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.169678
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2scuB
id: 2scuB   alignment found: /projects/compbio/experiments/models.97/pdb/2s/2scuB/nostruct-align/2scuB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2scuB/nostruct-align/2scuB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2s/2scuB/nostruct-align/2scuB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29890/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.551636
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2pkaA
id: 2pkaA   alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pkaA/nostruct-align/2pkaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pkaA/nostruct-align/2pkaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2p/2pkaA/nostruct-align/2pkaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19752/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.039673
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2cau
id: 2cau   alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cau/nostruct-align/2cau.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cau/nostruct-align/2cau.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2c/2cau/nostruct-align/2cau.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1533/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.205566
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2tnfA
id: 2tnfA   alignment found: /projects/compbio/experiments/models.97/pdb/2t/2tnfA/nostruct-align/2tnfA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2tnfA/nostruct-align/2tnfA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2t/2tnfA/nostruct-align/2tnfA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2138/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.860596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2pgi
id: 2pgi   alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pgi/nostruct-align/2pgi.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pgi/nostruct-align/2pgi.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2p/2pgi/nostruct-align/2pgi.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27089/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.133545
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2scuA
id: 2scuA   alignment found: /projects/compbio/experiments/models.97/pdb/2s/2scuA/nostruct-align/2scuA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2scuA/nostruct-align/2scuA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2s/2scuA/nostruct-align/2scuA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31306/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.823608
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2u2fA
id: 2u2fA   alignment found: /projects/compbio/experiments/models.97/pdb/2u/2u2fA/nostruct-align/2u2fA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2u/2u2fA/nostruct-align/2u2fA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2u/2u2fA/nostruct-align/2u2fA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10909/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.904541
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1skyB
id: 1skyB   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1skyB/nostruct-align/1skyB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1skyB/nostruct-align/1skyB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1skyB/nostruct-align/1skyB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5511/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.569580
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2u1a
id: 2u1a   alignment found: /projects/compbio/experiments/models.97/pdb/2u/2u1a/nostruct-align/2u1a.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2u/2u1a/nostruct-align/2u1a.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2u/2u1a/nostruct-align/2u1a.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-821/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.938599
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ts1
id: 2ts1   alignment found: /projects/compbio/experiments/models.97/pdb/2t/2ts1/nostruct-align/2ts1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2t/2ts1/nostruct-align/2ts1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2t/2ts1/nostruct-align/2ts1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7145/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.272583
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2rspB
id: 2rspB   alignment found: /projects/compbio/experiments/models.97/pdb/2r/2rspB/nostruct-align/2rspB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2r/2rspB/nostruct-align/2rspB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2r/2rspB/nostruct-align/2rspB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5072/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.530640
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3dni
id: 3dni   alignment found: /projects/compbio/experiments/models.97/pdb/3d/3dni/nostruct-align/3dni.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3d/3dni/nostruct-align/3dni.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3d/3dni/nostruct-align/3dni.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1149/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.328613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3eugA
id: 3eugA   alignment found: /projects/compbio/experiments/models.97/pdb/3e/3eugA/nostruct-align/3eugA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3e/3eugA/nostruct-align/3eugA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3e/3eugA/nostruct-align/3eugA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17228/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.788574
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2xat
id: 2xat   alignment found: /projects/compbio/experiments/models.97/pdb/2x/2xat/nostruct-align/2xat.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2x/2xat/nostruct-align/2xat.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2x/2xat/nostruct-align/2xat.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14857/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.747559
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3eipA
id: 3eipA   alignment found: /projects/compbio/experiments/models.97/pdb/3e/3eipA/nostruct-align/3eipA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3e/3eipA/nostruct-align/3eipA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3e/3eipA/nostruct-align/3eipA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18810/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.833618
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3fib
id: 3fib   alignment found: /projects/compbio/experiments/models.97/pdb/3f/3fib/nostruct-align/3fib.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3f/3fib/nostruct-align/3fib.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3f/3fib/nostruct-align/3fib.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26287/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.761597
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3mag
id: 3mag   alignment found: /projects/compbio/experiments/models.97/pdb/3m/3mag/nostruct-align/3mag.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3m/3mag/nostruct-align/3mag.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3m/3mag/nostruct-align/3mag.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9352/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.438599
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3pchM
id: 3pchM   alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pchM/nostruct-align/3pchM.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pchM/nostruct-align/3pchM.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3p/3pchM/nostruct-align/3pchM.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23316/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.653687
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2vsgA
id: 2vsgA   alignment found: /projects/compbio/experiments/models.97/pdb/2v/2vsgA/nostruct-align/2vsgA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2v/2vsgA/nostruct-align/2vsgA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2v/2vsgA/nostruct-align/2vsgA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24245/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.923584
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3pchA
id: 3pchA   alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pchA/nostruct-align/3pchA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pchA/nostruct-align/3pchA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3p/3pchA/nostruct-align/3pchA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26413/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.606567
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2vil
id: 2vil   alignment found: /projects/compbio/experiments/models.97/pdb/2v/2vil/nostruct-align/2vil.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2v/2vil/nostruct-align/2vil.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2v/2vil/nostruct-align/2vil.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-311/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.219604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3proC
id: 3proC   alignment found: /projects/compbio/experiments/models.97/pdb/3p/3proC/nostruct-align/3proC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3proC/nostruct-align/3proC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3p/3proC/nostruct-align/3proC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21493/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.882568
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3ssi
id: 3ssi   alignment found: /projects/compbio/experiments/models.97/pdb/3s/3ssi/nostruct-align/3ssi.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3s/3ssi/nostruct-align/3ssi.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3s/3ssi/nostruct-align/3ssi.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23839/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.533569
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2reb
id: 2reb   alignment found: /projects/compbio/experiments/models.97/pdb/2r/2reb/nostruct-align/2reb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2r/2reb/nostruct-align/2reb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2r/2reb/nostruct-align/2reb.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17017/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.464600
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3ncmA
id: 3ncmA   alignment found: /projects/compbio/experiments/models.97/pdb/3n/3ncmA/nostruct-align/3ncmA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3n/3ncmA/nostruct-align/3ncmA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3n/3ncmA/nostruct-align/3ncmA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7930/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.719604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3tgf
id: 3tgf   alignment found: /projects/compbio/experiments/models.97/pdb/3t/3tgf/nostruct-align/3tgf.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3t/3tgf/nostruct-align/3tgf.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3t/3tgf/nostruct-align/3tgf.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-610/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.362671
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3stdA
id: 3stdA   alignment found: /projects/compbio/experiments/models.97/pdb/3s/3stdA/nostruct-align/3stdA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3s/3stdA/nostruct-align/3stdA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3s/3stdA/nostruct-align/3stdA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8443/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.999634
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3erdA
id: 3erdA   alignment found: /projects/compbio/experiments/models.97/pdb/3e/3erdA/nostruct-align/3erdA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3e/3erdA/nostruct-align/3erdA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3e/3erdA/nostruct-align/3erdA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30061/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.820557
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2lbd
id: 2lbd   alignment found: /projects/compbio/experiments/models.97/pdb/2l/2lbd/nostruct-align/2lbd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2lbd/nostruct-align/2lbd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2l/2lbd/nostruct-align/2lbd.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12764/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.473633
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4gatA
id: 4gatA   alignment found: /projects/compbio/experiments/models.97/pdb/4g/4gatA/nostruct-align/4gatA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/4g/4gatA/nostruct-align/4gatA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/4g/4gatA/nostruct-align/4gatA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14896/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.854614
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3mdeA
id: 3mdeA   alignment found: /projects/compbio/experiments/models.97/pdb/3m/3mdeA/nostruct-align/3mdeA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3m/3mdeA/nostruct-align/3mdeA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3m/3mdeA/nostruct-align/3mdeA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11778/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.109619
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4hb1
id: 4hb1   alignment found: /projects/compbio/experiments/models.97/pdb/4h/4hb1/nostruct-align/4hb1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/4h/4hb1/nostruct-align/4hb1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/4h/4hb1/nostruct-align/4hb1.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9049/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.846558
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4crxA
id: 4crxA   alignment found: /projects/compbio/experiments/models.97/pdb/4c/4crxA/nostruct-align/4crxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/4c/4crxA/nostruct-align/4crxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/4c/4crxA/nostruct-align/4crxA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13911/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.805542
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3tmkA
id: 3tmkA   alignment found: /projects/compbio/experiments/models.97/pdb/3t/3tmkA/nostruct-align/3tmkA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3t/3tmkA/nostruct-align/3tmkA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3t/3tmkA/nostruct-align/3tmkA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6177/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.900635
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2rmpA
id: 2rmpA   alignment found: /projects/compbio/experiments/models.97/pdb/2r/2rmpA/nostruct-align/2rmpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2r/2rmpA/nostruct-align/2rmpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2r/2rmpA/nostruct-align/2rmpA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7333/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.597656
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3thi
id: 3thi   alignment found: /projects/compbio/experiments/models.97/pdb/3t/3thi/nostruct-align/3thi.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3t/3thi/nostruct-align/3thi.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3t/3thi/nostruct-align/3thi.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7797/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.478638
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3pmgA
id: 3pmgA   alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pmgA/nostruct-align/3pmgA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pmgA/nostruct-align/3pmgA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3p/3pmgA/nostruct-align/3pmgA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28784/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.703613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 6prcH
id: 6prcH   alignment found: /projects/compbio/experiments/models.97/pdb/6p/6prcH/nostruct-align/6prcH.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/6p/6prcH/nostruct-align/6prcH.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/6p/6prcH/nostruct-align/6prcH.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13865/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.366577
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 7apiB
id: 7apiB   alignment found: /projects/compbio/experiments/models.97/pdb/7a/7apiB/nostruct-align/7apiB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/7a/7apiB/nostruct-align/7apiB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/7a/7apiB/nostruct-align/7apiB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15403/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.995605
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 6paxA
id: 6paxA   alignment found: /projects/compbio/experiments/models.97/pdb/6p/6paxA/nostruct-align/6paxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/6p/6paxA/nostruct-align/6paxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/6p/6paxA/nostruct-align/6paxA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22036/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.020630
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 8atcB
id: 8atcB   alignment found: /projects/compbio/experiments/models.97/pdb/8a/8atcB/nostruct-align/8atcB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/8a/8atcB/nostruct-align/8atcB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/8a/8atcB/nostruct-align/8atcB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24368/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.888672
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4rhv4
id: 4rhv4   alignment found: /projects/compbio/experiments/models.97/pdb/4r/4rhv4/nostruct-align/4rhv4.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/4r/4rhv4/nostruct-align/4rhv4.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/4r/4rhv4/nostruct-align/4rhv4.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7535/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.845581
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 5tmp
id: 5tmp   alignment found: /projects/compbio/experiments/models.97/pdb/5t/5tmp/nostruct-align/5tmp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/5t/5tmp/nostruct-align/5tmp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/5t/5tmp/nostruct-align/5tmp.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22814/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.910522
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3pfk
id: 3pfk   alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pfk/nostruct-align/3pfk.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pfk/nostruct-align/3pfk.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3p/3pfk/nostruct-align/3pfk.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17771/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.098633
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4kbpA
id: 4kbpA   alignment found: /projects/compbio/experiments/models.97/pdb/4k/4kbpA/nostruct-align/4kbpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/4k/4kbpA/nostruct-align/4kbpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/4k/4kbpA/nostruct-align/4kbpA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30648/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.775513
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 7odcA
id: 7odcA   alignment found: /projects/compbio/experiments/models.97/pdb/7o/7odcA/nostruct-align/7odcA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/7o/7odcA/nostruct-align/7odcA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/7o/7odcA/nostruct-align/7odcA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14453/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.324585
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4pah
id: 4pah   alignment found: /projects/compbio/experiments/models.97/pdb/4p/4pah/nostruct-align/4pah.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/4p/4pah/nostruct-align/4pah.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/4p/4pah/nostruct-align/4pah.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4076/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.907715
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 6prcM
id: 6prcM   alignment found: /projects/compbio/experiments/models.97/pdb/6p/6prcM/nostruct-align/6prcM.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/6p/6prcM/nostruct-align/6prcM.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/6p/6prcM/nostruct-align/6prcM.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22971/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.798584
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2prgA
id: 2prgA   alignment found: /projects/compbio/experiments/models.97/pdb/2p/2prgA/nostruct-align/2prgA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2prgA/nostruct-align/2prgA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2p/2prgA/nostruct-align/2prgA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12001/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.058594
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 5eat
id: 5eat   alignment found: /projects/compbio/experiments/models.97/pdb/5e/5eat/nostruct-align/5eat.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/5e/5eat/nostruct-align/5eat.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/5e/5eat/nostruct-align/5eat.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29099/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.558594
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2yhx
id: 2yhx   alignment found: /projects/compbio/experiments/models.97/pdb/2y/2yhx/nostruct-align/2yhx.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2y/2yhx/nostruct-align/2yhx.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2y/2yhx/nostruct-align/2yhx.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18983/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.176636
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4mbp
id: 4mbp   alignment found: /projects/compbio/experiments/models.97/pdb/4m/4mbp/nostruct-align/4mbp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/4m/4mbp/nostruct-align/4mbp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/4m/4mbp/nostruct-align/4mbp.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4528/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.285645
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3ldh
id: 3ldh   alignment found: /projects/compbio/experiments/models.97/pdb/3l/3ldh/nostruct-align/3ldh.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3l/3ldh/nostruct-align/3ldh.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3l/3ldh/nostruct-align/3ldh.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6247/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.267578
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2napA
id: 2napA   alignment found: /projects/compbio/experiments/models.97/pdb/2n/2napA/nostruct-align/2napA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2n/2napA/nostruct-align/2napA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2n/2napA/nostruct-align/2napA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13367/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.586548
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tgoA
id: 1tgoA   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tgoA/nostruct-align/1tgoA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tgoA/nostruct-align/1tgoA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tgoA/nostruct-align/1tgoA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29192/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.427612
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3bct
id: 3bct   alignment found: /projects/compbio/experiments/models.97/pdb/3b/3bct/nostruct-align/3bct.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3b/3bct/nostruct-align/3bct.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3b/3bct/nostruct-align/3bct.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25595/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.133667
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 6prcL
id: 6prcL   alignment found: /projects/compbio/experiments/models.97/pdb/6p/6prcL/nostruct-align/6prcL.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/6p/6prcL/nostruct-align/6prcL.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/6p/6prcL/nostruct-align/6prcL.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7305/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.885620
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 8kme2
id: 8kme2   alignment found: /projects/compbio/experiments/models.97/pdb/8k/8kme2/nostruct-align/8kme2.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/8k/8kme2/nostruct-align/8kme2.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/8k/8kme2/nostruct-align/8kme2.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29094/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.097534
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 8fabA
id: 8fabA   alignment found: /projects/compbio/experiments/models.97/pdb/8f/8fabA/nostruct-align/8fabA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/8f/8fabA/nostruct-align/8fabA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/8f/8fabA/nostruct-align/8fabA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21317/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.227539
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tkiA
id: 1tkiA   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tkiA/nostruct-align/1tkiA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tkiA/nostruct-align/1tkiA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tkiA/nostruct-align/1tkiA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8433/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.450562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hvc
id: 1hvc   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hvc/nostruct-align/1hvc.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hvc/nostruct-align/1hvc.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hvc/nostruct-align/1hvc.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30998/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.683594
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 19hcA
id: 19hcA   alignment found: /projects/compbio/experiments/models.97/pdb/19/19hcA/nostruct-align/19hcA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/19/19hcA/nostruct-align/19hcA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/19/19hcA/nostruct-align/19hcA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21592/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.985596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1awe
id: 1awe   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1awe/nostruct-align/1awe.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1awe/nostruct-align/1awe.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1awe/nostruct-align/1awe.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16131/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.690552
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b2iA
id: 1b2iA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b2iA/nostruct-align/1b2iA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b2iA/nostruct-align/1b2iA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b2iA/nostruct-align/1b2iA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23654/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.140625
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b12A
id: 1b12A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b12A/nostruct-align/1b12A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b12A/nostruct-align/1b12A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b12A/nostruct-align/1b12A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28642/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.600586
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b3qA
id: 1b3qA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3qA/nostruct-align/1b3qA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3qA/nostruct-align/1b3qA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b3qA/nostruct-align/1b3qA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25403/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.792603
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b16A
id: 1b16A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b16A/nostruct-align/1b16A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b16A/nostruct-align/1b16A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b16A/nostruct-align/1b16A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11649/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.725586
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b6rA
id: 1b6rA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b6rA/nostruct-align/1b6rA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b6rA/nostruct-align/1b6rA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b6rA/nostruct-align/1b6rA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11498/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.657593
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b9hA
id: 1b9hA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9hA/nostruct-align/1b9hA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9hA/nostruct-align/1b9hA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b9hA/nostruct-align/1b9hA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9126/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.485596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b0uA
id: 1b0uA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b0uA/nostruct-align/1b0uA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b0uA/nostruct-align/1b0uA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b0uA/nostruct-align/1b0uA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17844/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.507568
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b8sA
id: 1b8sA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8sA/nostruct-align/1b8sA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8sA/nostruct-align/1b8sA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b8sA/nostruct-align/1b8sA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12511/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -15.077515
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bjnA
id: 1bjnA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bjnA/nostruct-align/1bjnA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bjnA/nostruct-align/1bjnA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bjnA/nostruct-align/1bjnA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26422/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.877686
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bpwA
id: 1bpwA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bpwA/nostruct-align/1bpwA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bpwA/nostruct-align/1bpwA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bpwA/nostruct-align/1bpwA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13119/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.090698
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c2aA
id: 1c2aA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c2aA/nostruct-align/1c2aA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c2aA/nostruct-align/1c2aA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c2aA/nostruct-align/1c2aA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20035/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.039551
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c17M
id: 1c17M   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c17M/nostruct-align/1c17M.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c17M/nostruct-align/1c17M.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c17M/nostruct-align/1c17M.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19730/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.228516
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c3qA
id: 1c3qA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3qA/nostruct-align/1c3qA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3qA/nostruct-align/1c3qA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c3qA/nostruct-align/1c3qA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27182/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.867554
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c4zA
id: 1c4zA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c4zA/nostruct-align/1c4zA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c4zA/nostruct-align/1c4zA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c4zA/nostruct-align/1c4zA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20381/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.923584
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cc8A
id: 1cc8A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cc8A/nostruct-align/1cc8A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cc8A/nostruct-align/1cc8A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cc8A/nostruct-align/1cc8A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29328/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.697510
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c0aA
id: 1c0aA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c0aA/nostruct-align/1c0aA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c0aA/nostruct-align/1c0aA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c0aA/nostruct-align/1c0aA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1110/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.202515
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ce0A
id: 1ce0A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ce0A/nostruct-align/1ce0A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ce0A/nostruct-align/1ce0A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1ce0A/nostruct-align/1ce0A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5605/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.680664
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vrkB
id: 1vrkB   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vrkB/nostruct-align/1vrkB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vrkB/nostruct-align/1vrkB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vrkB/nostruct-align/1vrkB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18494/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.670532
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dgwX
id: 1dgwX   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgwX/nostruct-align/1dgwX.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgwX/nostruct-align/1dgwX.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dgwX/nostruct-align/1dgwX.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9218/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.811646
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dgwY
id: 1dgwY   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgwY/nostruct-align/1dgwY.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgwY/nostruct-align/1dgwY.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dgwY/nostruct-align/1dgwY.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30131/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.471558
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b4eA
id: 1b4eA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4eA/nostruct-align/1b4eA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4eA/nostruct-align/1b4eA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b4eA/nostruct-align/1b4eA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5909/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.450562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dg9A
id: 1dg9A   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dg9A/nostruct-align/1dg9A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dg9A/nostruct-align/1dg9A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dg9A/nostruct-align/1dg9A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28826/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.334595
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cq3A
id: 1cq3A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cq3A/nostruct-align/1cq3A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cq3A/nostruct-align/1cq3A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cq3A/nostruct-align/1cq3A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6918/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.905518
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cg5B
id: 1cg5B   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cg5B/nostruct-align/1cg5B.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cg5B/nostruct-align/1cg5B.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cg5B/nostruct-align/1cg5B.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27627/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.394531
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cm5A
id: 1cm5A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cm5A/nostruct-align/1cm5A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cm5A/nostruct-align/1cm5A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cm5A/nostruct-align/1cm5A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24430/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.900513
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ct9A
id: 1ct9A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ct9A/nostruct-align/1ct9A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ct9A/nostruct-align/1ct9A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1ct9A/nostruct-align/1ct9A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15376/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.957520
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cvjB
id: 1cvjB   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cvjB/nostruct-align/1cvjB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cvjB/nostruct-align/1cvjB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cvjB/nostruct-align/1cvjB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23791/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.940552
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cxwA
id: 1cxwA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cxwA/nostruct-align/1cxwA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cxwA/nostruct-align/1cxwA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cxwA/nostruct-align/1cxwA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27852/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.226685
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d2zA
id: 1d2zA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d2zA/nostruct-align/1d2zA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d2zA/nostruct-align/1d2zA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d2zA/nostruct-align/1d2zA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10478/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.640625
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d2zB
id: 1d2zB   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d2zB/nostruct-align/1d2zB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d2zB/nostruct-align/1d2zB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d2zB/nostruct-align/1d2zB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3650/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.748535
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ctqA
id: 1ctqA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ctqA/nostruct-align/1ctqA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ctqA/nostruct-align/1ctqA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1ctqA/nostruct-align/1ctqA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11776/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.615601
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d0vA
id: 1d0vA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d0vA/nostruct-align/1d0vA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d0vA/nostruct-align/1d0vA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d0vA/nostruct-align/1d0vA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30056/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.619629
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d6gA
id: 1d6gA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d6gA/nostruct-align/1d6gA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d6gA/nostruct-align/1d6gA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d6gA/nostruct-align/1d6gA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18934/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.850586
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d3vA
id: 1d3vA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d3vA/nostruct-align/1d3vA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d3vA/nostruct-align/1d3vA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d3vA/nostruct-align/1d3vA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18833/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.805542
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cs0B
id: 1cs0B   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cs0B/nostruct-align/1cs0B.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cs0B/nostruct-align/1cs0B.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cs0B/nostruct-align/1cs0B.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5289/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.782593
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cztA
id: 1cztA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cztA/nostruct-align/1cztA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cztA/nostruct-align/1cztA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cztA/nostruct-align/1cztA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7850/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.052612
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d1dA
id: 1d1dA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d1dA/nostruct-align/1d1dA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d1dA/nostruct-align/1d1dA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d1dA/nostruct-align/1d1dA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30604/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.043579
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dbwA
id: 1dbwA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dbwA/nostruct-align/1dbwA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dbwA/nostruct-align/1dbwA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dbwA/nostruct-align/1dbwA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20682/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.770630
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dabA
id: 1dabA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dabA/nostruct-align/1dabA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dabA/nostruct-align/1dabA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dabA/nostruct-align/1dabA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1167/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -36.348511
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dgrV
id: 1dgrV   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgrV/nostruct-align/1dgrV.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgrV/nostruct-align/1dgrV.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dgrV/nostruct-align/1dgrV.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file ./tmp/tmp-build-weighted-model-purr-4993/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.878540
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dfeA
id: 1dfeA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dfeA/nostruct-align/1dfeA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dfeA/nostruct-align/1dfeA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dfeA/nostruct-align/1dfeA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23569/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.005615
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dgwA
id: 1dgwA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgwA/nostruct-align/1dgwA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgwA/nostruct-align/1dgwA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dgwA/nostruct-align/1dgwA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-927/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.107666
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dfuP
id: 1dfuP   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dfuP/nostruct-align/1dfuP.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dfuP/nostruct-align/1dfuP.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dfuP/nostruct-align/1dfuP.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8077/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.536621
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1diiC
id: 1diiC   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1diiC/nostruct-align/1diiC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1diiC/nostruct-align/1diiC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1diiC/nostruct-align/1diiC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5104/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.209595
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1di2A
id: 1di2A   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1di2A/nostruct-align/1di2A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1di2A/nostruct-align/1di2A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1di2A/nostruct-align/1di2A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5821/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.236694
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dfsA
id: 1dfsA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dfsA/nostruct-align/1dfsA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dfsA/nostruct-align/1dfsA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dfsA/nostruct-align/1dfsA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7227/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.869629
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cr6B
id: 1cr6B   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cr6B/nostruct-align/1cr6B.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cr6B/nostruct-align/1cr6B.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cr6B/nostruct-align/1cr6B.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16293/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.714600
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1db3A
id: 1db3A   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1db3A/nostruct-align/1db3A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1db3A/nostruct-align/1db3A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1db3A/nostruct-align/1db3A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28295/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.728638
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1df4A
id: 1df4A   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1df4A/nostruct-align/1df4A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1df4A/nostruct-align/1df4A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1df4A/nostruct-align/1df4A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14840/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.579590
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cxyA
id: 1cxyA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cxyA/nostruct-align/1cxyA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cxyA/nostruct-align/1cxyA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cxyA/nostruct-align/1cxyA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28806/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.057617
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1f58P
id: 1f58P   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1f58P/nostruct-align/1f58P.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1f58P/nostruct-align/1f58P.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1f58P/nostruct-align/1f58P.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3014/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -4.697632
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qf5A
id: 1qf5A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qf5A/nostruct-align/1qf5A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qf5A/nostruct-align/1qf5A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qf5A/nostruct-align/1qf5A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15188/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.191650
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qd9A
id: 1qd9A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qd9A/nostruct-align/1qd9A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qd9A/nostruct-align/1qd9A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qd9A/nostruct-align/1qd9A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17658/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.751709
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1budA
id: 1budA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1budA/nostruct-align/1budA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1budA/nostruct-align/1budA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1budA/nostruct-align/1budA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8180/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.575684
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2cpgA
id: 2cpgA   alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cpgA/nostruct-align/2cpgA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cpgA/nostruct-align/2cpgA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2c/2cpgA/nostruct-align/2cpgA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28209/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.789673
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qt9A
id: 1qt9A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qt9A/nostruct-align/1qt9A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qt9A/nostruct-align/1qt9A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qt9A/nostruct-align/1qt9A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22603/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.806519
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dd8A
id: 1dd8A   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dd8A/nostruct-align/1dd8A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dd8A/nostruct-align/1dd8A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dd8A/nostruct-align/1dd8A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13130/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.026611
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a3lH
id: 1a3lH   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a3lH/nostruct-align/1a3lH.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a3lH/nostruct-align/1a3lH.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a3lH/nostruct-align/1a3lH.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21407/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.477539
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1yagG
id: 1yagG   alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yagG/nostruct-align/1yagG.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yagG/nostruct-align/1yagG.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1y/1yagG/nostruct-align/1yagG.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16166/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.140625
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a3lL
id: 1a3lL   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a3lL/nostruct-align/1a3lL.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a3lL/nostruct-align/1a3lL.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a3lL/nostruct-align/1a3lL.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30026/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.177612
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qipA
id: 1qipA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qipA/nostruct-align/1qipA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qipA/nostruct-align/1qipA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qipA/nostruct-align/1qipA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6779/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.268555
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ughI
id: 1ughI   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1ughI/nostruct-align/1ughI.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1ughI/nostruct-align/1ughI.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1ughI/nostruct-align/1ughI.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31490/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.481567
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qh3A
id: 1qh3A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qh3A/nostruct-align/1qh3A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qh3A/nostruct-align/1qh3A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qh3A/nostruct-align/1qh3A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14873/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.983521
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qu9A
id: 1qu9A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qu9A/nostruct-align/1qu9A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qu9A/nostruct-align/1qu9A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qu9A/nostruct-align/1qu9A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26964/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.700684
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ex1A
id: 1ex1A   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ex1A/nostruct-align/1ex1A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ex1A/nostruct-align/1ex1A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1ex1A/nostruct-align/1ex1A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24094/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.673706
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dbgA
id: 1dbgA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dbgA/nostruct-align/1dbgA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dbgA/nostruct-align/1dbgA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dbgA/nostruct-align/1dbgA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7413/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -265.644653
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qh4A
id: 1qh4A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qh4A/nostruct-align/1qh4A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qh4A/nostruct-align/1qh4A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qh4A/nostruct-align/1qh4A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10784/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.243530
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bxaA
id: 1bxaA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxaA/nostruct-align/1bxaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxaA/nostruct-align/1bxaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bxaA/nostruct-align/1bxaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10438/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.891602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1louA
id: 1louA   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1louA/nostruct-align/1louA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1louA/nostruct-align/1louA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1louA/nostruct-align/1louA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27646/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.891602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c3jA
id: 1c3jA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3jA/nostruct-align/1c3jA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3jA/nostruct-align/1c3jA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c3jA/nostruct-align/1c3jA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32392/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.018677
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cor
id: 1cor   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cor/nostruct-align/1cor.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cor/nostruct-align/1cor.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cor/nostruct-align/1cor.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-637/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.264526
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bn8A
id: 1bn8A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bn8A/nostruct-align/1bn8A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bn8A/nostruct-align/1bn8A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bn8A/nostruct-align/1bn8A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6765/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.626587
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bza
id: 1bza   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bza/nostruct-align/1bza.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bza/nostruct-align/1bza.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bza/nostruct-align/1bza.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17884/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.443604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qh8A
id: 1qh8A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qh8A/nostruct-align/1qh8A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qh8A/nostruct-align/1qh8A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qh8A/nostruct-align/1qh8A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3863/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.968628
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qh8B
id: 1qh8B   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qh8B/nostruct-align/1qh8B.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qh8B/nostruct-align/1qh8B.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qh8B/nostruct-align/1qh8B.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18647/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.598633
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bxeA
id: 1bxeA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxeA/nostruct-align/1bxeA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxeA/nostruct-align/1bxeA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bxeA/nostruct-align/1bxeA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10932/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.778564
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c3mA
id: 1c3mA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3mA/nostruct-align/1c3mA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3mA/nostruct-align/1c3mA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c3mA/nostruct-align/1c3mA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1999/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.219604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qk4A
id: 1qk4A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qk4A/nostruct-align/1qk4A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qk4A/nostruct-align/1qk4A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qk4A/nostruct-align/1qk4A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17034/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.637573
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qmpA
id: 1qmpA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qmpA/nostruct-align/1qmpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qmpA/nostruct-align/1qmpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qmpA/nostruct-align/1qmpA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25241/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.942505
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qjwA
id: 1qjwA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qjwA/nostruct-align/1qjwA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qjwA/nostruct-align/1qjwA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qjwA/nostruct-align/1qjwA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30979/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.682617
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d9bA
id: 1d9bA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d9bA/nostruct-align/1d9bA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d9bA/nostruct-align/1d9bA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d9bA/nostruct-align/1d9bA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28858/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.417603
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cs1A
id: 1cs1A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cs1A/nostruct-align/1cs1A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cs1A/nostruct-align/1cs1A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cs1A/nostruct-align/1cs1A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5073/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.575562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c24A
id: 1c24A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c24A/nostruct-align/1c24A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c24A/nostruct-align/1c24A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c24A/nostruct-align/1c24A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17903/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.224609
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b5qA
id: 1b5qA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b5qA/nostruct-align/1b5qA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b5qA/nostruct-align/1b5qA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b5qA/nostruct-align/1b5qA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5425/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -16.329590
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rpjA
id: 1rpjA   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rpjA/nostruct-align/1rpjA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rpjA/nostruct-align/1rpjA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rpjA/nostruct-align/1rpjA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23526/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.186523
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ldtL
id: 1ldtL   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1ldtL/nostruct-align/1ldtL.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1ldtL/nostruct-align/1ldtL.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1ldtL/nostruct-align/1ldtL.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27867/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.592651
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2bc2A
id: 2bc2A   alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bc2A/nostruct-align/2bc2A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bc2A/nostruct-align/2bc2A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2b/2bc2A/nostruct-align/2bc2A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10927/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.391602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3rabA
id: 3rabA   alignment found: /projects/compbio/experiments/models.97/pdb/3r/3rabA/nostruct-align/3rabA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3r/3rabA/nostruct-align/3rabA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3r/3rabA/nostruct-align/3rabA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20522/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.982666
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ae2A
id: 2ae2A   alignment found: /projects/compbio/experiments/models.97/pdb/2a/2ae2A/nostruct-align/2ae2A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2ae2A/nostruct-align/2ae2A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2a/2ae2A/nostruct-align/2ae2A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19797/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.439697
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 7fd1A
id: 7fd1A   alignment found: /projects/compbio/experiments/models.97/pdb/7f/7fd1A/nostruct-align/7fd1A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/7f/7fd1A/nostruct-align/7fd1A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/7f/7fd1A/nostruct-align/7fd1A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17438/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.495605
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2pvbA
id: 2pvbA   alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pvbA/nostruct-align/2pvbA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pvbA/nostruct-align/2pvbA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2p/2pvbA/nostruct-align/2pvbA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7146/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.589600
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bvqA
id: 1bvqA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bvqA/nostruct-align/1bvqA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20774/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.364502
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b4vA
id: 1b4vA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4vA/nostruct-align/1b4vA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4vA/nostruct-align/1b4vA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b4vA/nostruct-align/1b4vA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15770/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.478516
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1l58
id: 1l58   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1l58/nostruct-align/1l58.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1l58/nostruct-align/1l58.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1l58/nostruct-align/1l58.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8841/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.586548
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cqyA
id: 1cqyA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cqyA/nostruct-align/1cqyA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cqyA/nostruct-align/1cqyA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cqyA/nostruct-align/1cqyA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14160/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.422607
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qgvA
id: 1qgvA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qgvA/nostruct-align/1qgvA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qgvA/nostruct-align/1qgvA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qgvA/nostruct-align/1qgvA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10635/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.951660
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qgbA
id: 1qgbA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qgbA/nostruct-align/1qgbA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qgbA/nostruct-align/1qgbA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qgbA/nostruct-align/1qgbA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9529/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.468628
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qlaC
id: 1qlaC   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qlaC/nostruct-align/1qlaC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qlaC/nostruct-align/1qlaC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qlaC/nostruct-align/1qlaC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7423/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.960571
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qo0D
id: 1qo0D   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qo0D/nostruct-align/1qo0D.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qo0D/nostruct-align/1qo0D.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qo0D/nostruct-align/1qo0D.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9254/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.217529
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qlaB
id: 1qlaB   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qlaB/nostruct-align/1qlaB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qlaB/nostruct-align/1qlaB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qlaB/nostruct-align/1qlaB.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19591/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.642578
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bxoA
id: 1bxoA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxoA/nostruct-align/1bxoA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxoA/nostruct-align/1bxoA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bxoA/nostruct-align/1bxoA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24734/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.273682
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tl2A
id: 1tl2A   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tl2A/nostruct-align/1tl2A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tl2A/nostruct-align/1tl2A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tl2A/nostruct-align/1tl2A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12352/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.892578
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qs2A
id: 1qs2A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qs2A/nostruct-align/1qs2A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qs2A/nostruct-align/1qs2A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qs2A/nostruct-align/1qs2A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2371/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.241577
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1r1bA
id: 1r1bA   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1r1bA/nostruct-align/1r1bA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1r1bA/nostruct-align/1r1bA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1r1bA/nostruct-align/1r1bA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30796/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.476562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qlaA
id: 1qlaA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qlaA/nostruct-align/1qlaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qlaA/nostruct-align/1qlaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qlaA/nostruct-align/1qlaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11719/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.010620
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qvaA
id: 1qvaA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qvaA/nostruct-align/1qvaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qvaA/nostruct-align/1qvaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qvaA/nostruct-align/1qvaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7842/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.562622
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qu0A
id: 1qu0A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qu0A/nostruct-align/1qu0A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qu0A/nostruct-align/1qu0A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qu0A/nostruct-align/1qu0A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-918/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.291626
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b9oA
id: 1b9oA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9oA/nostruct-align/1b9oA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9oA/nostruct-align/1b9oA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b9oA/nostruct-align/1b9oA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27252/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.462646
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qs1A
id: 1qs1A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qs1A/nostruct-align/1qs1A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qs1A/nostruct-align/1qs1A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qs1A/nostruct-align/1qs1A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9072/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.527710
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1icfI
id: 1icfI   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1icfI/nostruct-align/1icfI.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1icfI/nostruct-align/1icfI.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1icfI/nostruct-align/1icfI.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32329/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.185669
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qjdA
id: 1qjdA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qjdA/nostruct-align/1qjdA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qjdA/nostruct-align/1qjdA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qjdA/nostruct-align/1qjdA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17578/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.587524
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d7oA
id: 1d7oA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d7oA/nostruct-align/1d7oA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d7oA/nostruct-align/1d7oA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d7oA/nostruct-align/1d7oA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7849/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.976562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hfeL
id: 1hfeL   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hfeL/nostruct-align/1hfeL.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hfeL/nostruct-align/1hfeL.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hfeL/nostruct-align/1hfeL.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30871/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.841675
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tmzA
id: 1tmzA   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tmzA/nostruct-align/1tmzA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tmzA/nostruct-align/1tmzA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tmzA/nostruct-align/1tmzA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25239/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.570557
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 5ukdA
id: 5ukdA   alignment found: /projects/compbio/experiments/models.97/pdb/5u/5ukdA/nostruct-align/5ukdA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/5u/5ukdA/nostruct-align/5ukdA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/5u/5ukdA/nostruct-align/5ukdA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18451/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.234619
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mgtA
id: 1mgtA   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mgtA/nostruct-align/1mgtA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mgtA/nostruct-align/1mgtA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mgtA/nostruct-align/1mgtA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2941/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.880615
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b1cA
id: 1b1cA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b1cA/nostruct-align/1b1cA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b1cA/nostruct-align/1b1cA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b1cA/nostruct-align/1b1cA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7334/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.968506
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1akr
id: 1akr   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1akr/nostruct-align/1akr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1akr/nostruct-align/1akr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1akr/nostruct-align/1akr.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12514/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.147583
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cg5A
id: 1cg5A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cg5A/nostruct-align/1cg5A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cg5A/nostruct-align/1cg5A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cg5A/nostruct-align/1cg5A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18448/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.926636
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qd1A
id: 1qd1A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qd1A/nostruct-align/1qd1A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qd1A/nostruct-align/1qd1A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qd1A/nostruct-align/1qd1A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12306/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.886597
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1alq
id: 1alq   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1alq/nostruct-align/1alq.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1alq/nostruct-align/1alq.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1alq/nostruct-align/1alq.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23374/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.859619
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qq7A
id: 1qq7A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qq7A/nostruct-align/1qq7A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qq7A/nostruct-align/1qq7A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qq7A/nostruct-align/1qq7A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9985/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.374512
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cz1A
id: 1cz1A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cz1A/nostruct-align/1cz1A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cz1A/nostruct-align/1cz1A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cz1A/nostruct-align/1cz1A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12171/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.599609
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tia
id: 1tia   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tia/nostruct-align/1tia.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tia/nostruct-align/1tia.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tia/nostruct-align/1tia.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file ./tmp/tmp-build-weighted-model-purr-5011/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.059692
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d7uA
id: 1d7uA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d7uA/nostruct-align/1d7uA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d7uA/nostruct-align/1d7uA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d7uA/nostruct-align/1d7uA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7920/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.413574
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bolA
id: 1bolA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bolA/nostruct-align/1bolA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bolA/nostruct-align/1bolA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bolA/nostruct-align/1bolA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20927/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.888672
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3pvaA
id: 3pvaA   alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pvaA/nostruct-align/3pvaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pvaA/nostruct-align/3pvaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3p/3pvaA/nostruct-align/3pvaA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23482/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.374634
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1czsA
id: 1czsA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1czsA/nostruct-align/1czsA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1czsA/nostruct-align/1czsA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1czsA/nostruct-align/1czsA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10593/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.052612
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qusA
id: 1qusA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qusA/nostruct-align/1qusA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qusA/nostruct-align/1qusA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qusA/nostruct-align/1qusA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15806/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.320557
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b04A
id: 1b04A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b04A/nostruct-align/1b04A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b04A/nostruct-align/1b04A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b04A/nostruct-align/1b04A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2880/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.550659
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b22A
id: 1b22A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b22A/nostruct-align/1b22A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b22A/nostruct-align/1b22A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b22A/nostruct-align/1b22A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10572/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.974609
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ce9C
id: 1ce9C   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ce9C/nostruct-align/1ce9C.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ce9C/nostruct-align/1ce9C.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1ce9C/nostruct-align/1ce9C.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4846/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.618652
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c8zA
id: 1c8zA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c8zA/nostruct-align/1c8zA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c8zA/nostruct-align/1c8zA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c8zA/nostruct-align/1c8zA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16451/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.256592
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d8iA
id: 1d8iA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d8iA/nostruct-align/1d8iA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d8iA/nostruct-align/1d8iA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d8iA/nostruct-align/1d8iA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31426/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.376587
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qupA
id: 1qupA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qupA/nostruct-align/1qupA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qupA/nostruct-align/1qupA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qupA/nostruct-align/1qupA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9733/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.182617
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qleD
id: 1qleD   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qleD/nostruct-align/1qleD.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qleD/nostruct-align/1qleD.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qleD/nostruct-align/1qleD.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17460/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.861572
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bqbA
id: 1bqbA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bqbA/nostruct-align/1bqbA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bqbA/nostruct-align/1bqbA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bqbA/nostruct-align/1bqbA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24020/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.347534
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bt0A
id: 1bt0A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bt0A/nostruct-align/1bt0A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bt0A/nostruct-align/1bt0A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bt0A/nostruct-align/1bt0A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5132/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.517578
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dguA
id: 1dguA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dguA/nostruct-align/1dguA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dguA/nostruct-align/1dguA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dguA/nostruct-align/1dguA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5774/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.194580
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qr0A
id: 1qr0A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qr0A/nostruct-align/1qr0A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qr0A/nostruct-align/1qr0A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qr0A/nostruct-align/1qr0A.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16947/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.855591
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fnd
id: 1fnd   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fnd/nostruct-align/1fnd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fnd/nostruct-align/1fnd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fnd/nostruct-align/1fnd.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16778/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.938599
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b0yA
id: 1b0yA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b0yA/nostruct-align/1b0yA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b0yA/nostruct-align/1b0yA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b0yA/nostruct-align/1b0yA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6264/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.409668
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b33N
id: 1b33N   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b33N/nostruct-align/1b33N.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b33N/nostruct-align/1b33N.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b33N/nostruct-align/1b33N.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17977/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.391602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dgrC
id: 1dgrC   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgrC/nostruct-align/1dgrC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgrC/nostruct-align/1dgrC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dgrC/nostruct-align/1dgrC.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3589/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.802612
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dgrM
id: 1dgrM   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgrM/nostruct-align/1dgrM.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgrM/nostruct-align/1dgrM.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dgrM/nostruct-align/1dgrM.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9098/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.471558
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dgrN
id: 1dgrN   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgrN/nostruct-align/1dgrN.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgrN/nostruct-align/1dgrN.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dgrN/nostruct-align/1dgrN.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27184/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.811646
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dgrW
id: 1dgrW   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgrW/nostruct-align/1dgrW.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgrW/nostruct-align/1dgrW.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dgrW/nostruct-align/1dgrW.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9224/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.235596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nftA
id: 1nftA   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nftA/nostruct-align/1nftA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nftA/nostruct-align/1nftA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nftA/nostruct-align/1nftA.t99-w0.5.mod(21):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25098/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.921631
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1igs
id: 1igs   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1igs/nostruct-align/1igs.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1igs/nostruct-align/1igs.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1igs/nostruct-align/1igs.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20208/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.164673
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1oatA
id: 1oatA   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1oatA/nostruct-align/1oatA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1oatA/nostruct-align/1oatA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1oatA/nostruct-align/1oatA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27148/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.980591
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1scuA
id: 1scuA   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1scuA/nostruct-align/1scuA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1scuA/nostruct-align/1scuA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1scuA/nostruct-align/1scuA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9493/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.991699
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1tdtA
id: 1tdtA   alignment found: /projects/compbio/experiments/models.97/pdb/1t/1tdtA/nostruct-align/1tdtA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1t/1tdtA/nostruct-align/1tdtA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1t/1tdtA/nostruct-align/1tdtA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17802/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.676636
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1vhiA
id: 1vhiA   alignment found: /projects/compbio/experiments/models.97/pdb/1v/1vhiA/nostruct-align/1vhiA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1v/1vhiA/nostruct-align/1vhiA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1v/1vhiA/nostruct-align/1vhiA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23066/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.334595
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1amtA
id: 1amtA   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1amtA/nostruct-align/1amtA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1amtA/nostruct-align/1amtA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1amtA/nostruct-align/1amtA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23943/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.528687
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1aikN
id: 1aikN   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1aikN/nostruct-align/1aikN.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1aikN/nostruct-align/1aikN.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1aikN/nostruct-align/1aikN.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30589/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.744507
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b10A
id: 1b10A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b10A/nostruct-align/1b10A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b10A/nostruct-align/1b10A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b10A/nostruct-align/1b10A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8132/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.945679
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a6l
id: 1a6l   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a6l/nostruct-align/1a6l.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a6l/nostruct-align/1a6l.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a6l/nostruct-align/1a6l.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15406/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.360718
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b0b
id: 1b0b   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b0b/nostruct-align/1b0b.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b0b/nostruct-align/1b0b.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b0b/nostruct-align/1b0b.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29512/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.130615
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b34B
id: 1b34B   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b34B/nostruct-align/1b34B.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b34B/nostruct-align/1b34B.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b34B/nostruct-align/1b34B.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26369/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.859619
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b4rA
id: 1b4rA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b4rA/nostruct-align/1b4rA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b4rA/nostruct-align/1b4rA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b4rA/nostruct-align/1b4rA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1280/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.281616
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b67A
id: 1b67A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b67A/nostruct-align/1b67A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b67A/nostruct-align/1b67A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b67A/nostruct-align/1b67A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12492/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.783691
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1as8A
id: 1as8A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1as8A/nostruct-align/1as8A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1as8A/nostruct-align/1as8A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1as8A/nostruct-align/1as8A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23131/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.439575
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b6tA
id: 1b6tA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b6tA/nostruct-align/1b6tA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b6tA/nostruct-align/1b6tA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b6tA/nostruct-align/1b6tA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14938/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.881592
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b71A
id: 1b71A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b71A/nostruct-align/1b71A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b71A/nostruct-align/1b71A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b71A/nostruct-align/1b71A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18901/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.901611
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b73A
id: 1b73A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b73A/nostruct-align/1b73A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b73A/nostruct-align/1b73A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b73A/nostruct-align/1b73A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10498/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.024536
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a1yE
id: 1a1yE   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a1yE/nostruct-align/1a1yE.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a1yE/nostruct-align/1a1yE.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a1yE/nostruct-align/1a1yE.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17300/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -15.783691
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b78A
id: 1b78A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b78A/nostruct-align/1b78A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b78A/nostruct-align/1b78A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b78A/nostruct-align/1b78A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13766/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.105591
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b74A
id: 1b74A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b74A/nostruct-align/1b74A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b74A/nostruct-align/1b74A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b74A/nostruct-align/1b74A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16870/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.024536
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1a75A
id: 1a75A   alignment found: /projects/compbio/experiments/models.97/pdb/1a/1a75A/nostruct-align/1a75A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1a/1a75A/nostruct-align/1a75A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1a/1a75A/nostruct-align/1a75A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32597/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.767700
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b9mA
id: 1b9mA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9mA/nostruct-align/1b9mA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9mA/nostruct-align/1b9mA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b9mA/nostruct-align/1b9mA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11162/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.809692
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b7bA
id: 1b7bA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b7bA/nostruct-align/1b7bA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b7bA/nostruct-align/1b7bA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b7bA/nostruct-align/1b7bA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22764/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.114624
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1benA
id: 1benA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1benA/nostruct-align/1benA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1benA/nostruct-align/1benA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1benA/nostruct-align/1benA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30558/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -4.959595
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b91A
id: 1b91A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b91A/nostruct-align/1b91A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b91A/nostruct-align/1b91A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b91A/nostruct-align/1b91A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1103/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.954712
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bm4A
id: 1bm4A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bm4A/nostruct-align/1bm4A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bm4A/nostruct-align/1bm4A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bm4A/nostruct-align/1bm4A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3083/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.534668
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b9lA
id: 1b9lA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b9lA/nostruct-align/1b9lA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b9lA/nostruct-align/1b9lA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b9lA/nostruct-align/1b9lA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31815/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.879639
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bnxA
id: 1bnxA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bnxA/nostruct-align/1bnxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bnxA/nostruct-align/1bnxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bnxA/nostruct-align/1bnxA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5183/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.168579
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b8gA
id: 1b8gA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b8gA/nostruct-align/1b8gA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b8gA/nostruct-align/1b8gA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b8gA/nostruct-align/1b8gA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15866/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.128662
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1boeA
id: 1boeA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1boeA/nostruct-align/1boeA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1boeA/nostruct-align/1boeA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1boeA/nostruct-align/1boeA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7799/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.068604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bo9A
id: 1bo9A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bo9A/nostruct-align/1bo9A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bo9A/nostruct-align/1bo9A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bo9A/nostruct-align/1bo9A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6275/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.212646
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b6a
id: 1b6a   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b6a/nostruct-align/1b6a.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b6a/nostruct-align/1b6a.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b6a/nostruct-align/1b6a.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13494/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.993652
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1br0A
id: 1br0A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1br0A/nostruct-align/1br0A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1br0A/nostruct-align/1br0A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1br0A/nostruct-align/1br0A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1417/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.286621
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bn6A
id: 1bn6A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bn6A/nostruct-align/1bn6A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bn6A/nostruct-align/1bn6A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bn6A/nostruct-align/1bn6A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29416/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.531616
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1booA
id: 1booA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1booA/nostruct-align/1booA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1booA/nostruct-align/1booA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1booA/nostruct-align/1booA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5750/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.254517
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b3mA
id: 1b3mA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b3mA/nostruct-align/1b3mA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b3mA/nostruct-align/1b3mA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b3mA/nostruct-align/1b3mA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30858/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -15.098633
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bsjA
id: 1bsjA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bsjA/nostruct-align/1bsjA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bsjA/nostruct-align/1bsjA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bsjA/nostruct-align/1bsjA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4511/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.319702
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bw6A
id: 1bw6A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bw6A/nostruct-align/1bw6A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bw6A/nostruct-align/1bw6A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bw6A/nostruct-align/1bw6A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32560/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.942627
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bw8A
id: 1bw8A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bw8A/nostruct-align/1bw8A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bw8A/nostruct-align/1bw8A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bw8A/nostruct-align/1bw8A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10963/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.244629
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bwx
id: 1bwx   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bwx/nostruct-align/1bwx.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bwx/nostruct-align/1bwx.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bwx/nostruct-align/1bwx.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25889/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.056641
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1brfA
id: 1brfA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1brfA/nostruct-align/1brfA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1brfA/nostruct-align/1brfA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1brfA/nostruct-align/1brfA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20268/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.171509
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bylA
id: 1bylA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bylA/nostruct-align/1bylA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bylA/nostruct-align/1bylA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bylA/nostruct-align/1bylA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21834/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.566650
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bzkA
id: 1bzkA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bzkA/nostruct-align/1bzkA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bzkA/nostruct-align/1bzkA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bzkA/nostruct-align/1bzkA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25522/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.494629
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bxxA
id: 1bxxA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bxxA/nostruct-align/1bxxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bxxA/nostruct-align/1bxxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bxxA/nostruct-align/1bxxA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18767/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.242554
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bywA
id: 1bywA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bywA/nostruct-align/1bywA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bywA/nostruct-align/1bywA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bywA/nostruct-align/1bywA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9970/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.689575
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bzbA
id: 1bzbA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bzbA/nostruct-align/1bzbA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bzbA/nostruct-align/1bzbA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bzbA/nostruct-align/1bzbA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8520/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.220581
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bwzA
id: 1bwzA   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bwzA/nostruct-align/1bwzA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bwzA/nostruct-align/1bwzA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bwzA/nostruct-align/1bwzA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14982/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.749634
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c1kA
id: 1c1kA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c1kA/nostruct-align/1c1kA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c1kA/nostruct-align/1c1kA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c1kA/nostruct-align/1c1kA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21328/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.038574
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c3cA
id: 1c3cA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c3cA/nostruct-align/1c3cA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c3cA/nostruct-align/1c3cA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c3cA/nostruct-align/1c3cA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25455/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.722534
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1bn7A
id: 1bn7A   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1bn7A/nostruct-align/1bn7A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1bn7A/nostruct-align/1bn7A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1bn7A/nostruct-align/1bn7A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20819/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.562622
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c5eA
id: 1c5eA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c5eA/nostruct-align/1c5eA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c5eA/nostruct-align/1c5eA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c5eA/nostruct-align/1c5eA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10007/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.290527
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c75A
id: 1c75A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c75A/nostruct-align/1c75A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c75A/nostruct-align/1c75A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c75A/nostruct-align/1c75A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16321/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.265625
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c9fA
id: 1c9fA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c9fA/nostruct-align/1c9fA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c9fA/nostruct-align/1c9fA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c9fA/nostruct-align/1c9fA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9738/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.791626
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c1gA
id: 1c1gA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c1gA/nostruct-align/1c1gA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c1gA/nostruct-align/1c1gA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c1gA/nostruct-align/1c1gA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25137/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.749634
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c9oA
id: 1c9oA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c9oA/nostruct-align/1c9oA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c9oA/nostruct-align/1c9oA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c9oA/nostruct-align/1c9oA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10101/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.380615
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1caxB
id: 1caxB   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1caxB/nostruct-align/1caxB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1caxB/nostruct-align/1caxB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1caxB/nostruct-align/1caxB.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26345/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -16.017578
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cb7B
id: 1cb7B   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cb7B/nostruct-align/1cb7B.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cb7B/nostruct-align/1cb7B.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cb7B/nostruct-align/1cb7B.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19122/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.438599
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c94A
id: 1c94A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c94A/nostruct-align/1c94A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c94A/nostruct-align/1c94A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c94A/nostruct-align/1c94A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6943/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.214600
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c9uA
id: 1c9uA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c9uA/nostruct-align/1c9uA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c9uA/nostruct-align/1c9uA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c9uA/nostruct-align/1c9uA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19268/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.844604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c1gB
id: 1c1gB   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c1gB/nostruct-align/1c1gB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c1gB/nostruct-align/1c1gB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c1gB/nostruct-align/1c1gB.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2366/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.749634
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c1gC
id: 1c1gC   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c1gC/nostruct-align/1c1gC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c1gC/nostruct-align/1c1gC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c1gC/nostruct-align/1c1gC.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22600/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.820679
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cdzA
id: 1cdzA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdzA/nostruct-align/1cdzA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdzA/nostruct-align/1cdzA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cdzA/nostruct-align/1cdzA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-138/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.064575
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ccr
id: 1ccr   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ccr/nostruct-align/1ccr.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ccr/nostruct-align/1ccr.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1ccr/nostruct-align/1ccr.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14887/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.264648
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ceuA
id: 1ceuA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ceuA/nostruct-align/1ceuA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ceuA/nostruct-align/1ceuA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1ceuA/nostruct-align/1ceuA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11768/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.696655
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cfzA
id: 1cfzA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cfzA/nostruct-align/1cfzA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cfzA/nostruct-align/1cfzA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cfzA/nostruct-align/1cfzA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5535/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.229614
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ckuA
id: 1ckuA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ckuA/nostruct-align/1ckuA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ckuA/nostruct-align/1ckuA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1ckuA/nostruct-align/1ckuA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7537/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.497559
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cdp
id: 1cdp   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cdp/nostruct-align/1cdp.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cdp/nostruct-align/1cdp.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cdp/nostruct-align/1cdp.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19312/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.763672
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ccwB
id: 1ccwB   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ccwB/nostruct-align/1ccwB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ccwB/nostruct-align/1ccwB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1ccwB/nostruct-align/1ccwB.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23017/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.438599
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1b37B
id: 1b37B   alignment found: /projects/compbio/experiments/models.97/pdb/1b/1b37B/nostruct-align/1b37B.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1b/1b37B/nostruct-align/1b37B.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1b/1b37B/nostruct-align/1b37B.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16134/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -15.134644
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cjxA
id: 1cjxA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cjxA/nostruct-align/1cjxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cjxA/nostruct-align/1cjxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cjxA/nostruct-align/1cjxA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27930/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.242676
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cd9C
id: 1cd9C   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cd9C/nostruct-align/1cd9C.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cd9C/nostruct-align/1cd9C.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cd9C/nostruct-align/1cd9C.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32517/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.336670
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ccwA
id: 1ccwA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ccwA/nostruct-align/1ccwA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ccwA/nostruct-align/1ccwA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1ccwA/nostruct-align/1ccwA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1785/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.543579
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ct7A
id: 1ct7A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1ct7A/nostruct-align/1ct7A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1ct7A/nostruct-align/1ct7A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1ct7A/nostruct-align/1ct7A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.341553
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cxpA
id: 1cxpA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cxpA/nostruct-align/1cxpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cxpA/nostruct-align/1cxpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cxpA/nostruct-align/1cxpA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26891/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.855591
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cr5A
id: 1cr5A   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cr5A/nostruct-align/1cr5A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cr5A/nostruct-align/1cr5A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cr5A/nostruct-align/1cr5A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17304/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.201538
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cmoA
id: 1cmoA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cmoA/nostruct-align/1cmoA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cmoA/nostruct-align/1cmoA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cmoA/nostruct-align/1cmoA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21886/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.959595
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1czpA
id: 1czpA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1czpA/nostruct-align/1czpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1czpA/nostruct-align/1czpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1czpA/nostruct-align/1czpA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16549/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.707642
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d0aB
id: 1d0aB   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d0aB/nostruct-align/1d0aB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d0aB/nostruct-align/1d0aB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d0aB/nostruct-align/1d0aB.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6558/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.093628
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d02A
id: 1d02A   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d02A/nostruct-align/1d02A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d02A/nostruct-align/1d02A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d02A/nostruct-align/1d02A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7351/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.013550
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cvrA
id: 1cvrA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cvrA/nostruct-align/1cvrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cvrA/nostruct-align/1cvrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cvrA/nostruct-align/1cvrA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9261/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.062622
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cxpC
id: 1cxpC   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cxpC/nostruct-align/1cxpC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cxpC/nostruct-align/1cxpC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cxpC/nostruct-align/1cxpC.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6616/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.447510
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cruA
id: 1cruA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cruA/nostruct-align/1cruA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cruA/nostruct-align/1cruA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cruA/nostruct-align/1cruA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9266/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -15.881592
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1c1gD
id: 1c1gD   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1c1gD/nostruct-align/1c1gD.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1c1gD/nostruct-align/1c1gD.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1c1gD/nostruct-align/1c1gD.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6484/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.820679
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d0qA
id: 1d0qA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d0qA/nostruct-align/1d0qA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d0qA/nostruct-align/1d0qA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d0qA/nostruct-align/1d0qA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27288/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.361694
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d1qA
id: 1d1qA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d1qA/nostruct-align/1d1qA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d1qA/nostruct-align/1d1qA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d1qA/nostruct-align/1d1qA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21718/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.028564
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d2iA
id: 1d2iA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d2iA/nostruct-align/1d2iA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d2iA/nostruct-align/1d2iA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d2iA/nostruct-align/1d2iA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10098/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.405640
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d2rB
id: 1d2rB   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d2rB/nostruct-align/1d2rB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d2rB/nostruct-align/1d2rB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d2rB/nostruct-align/1d2rB.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19507/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.331543
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d3bA
id: 1d3bA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d3bA/nostruct-align/1d3bA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d3bA/nostruct-align/1d3bA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d3bA/nostruct-align/1d3bA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24337/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.135620
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d3bB
id: 1d3bB   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d3bB/nostruct-align/1d3bB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d3bB/nostruct-align/1d3bB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d3bB/nostruct-align/1d3bB.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20310/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.578491
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d2vA
id: 1d2vA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d2vA/nostruct-align/1d2vA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d2vA/nostruct-align/1d2vA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d2vA/nostruct-align/1d2vA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25692/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.855591
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d4bA
id: 1d4bA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d4bA/nostruct-align/1d4bA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d4bA/nostruct-align/1d4bA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d4bA/nostruct-align/1d4bA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29648/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.862671
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d5nA
id: 1d5nA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d5nA/nostruct-align/1d5nA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d5nA/nostruct-align/1d5nA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d5nA/nostruct-align/1d5nA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14737/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.892578
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d4oA
id: 1d4oA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d4oA/nostruct-align/1d4oA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d4oA/nostruct-align/1d4oA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d4oA/nostruct-align/1d4oA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14434/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.764648
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d1gA
id: 1d1gA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d1gA/nostruct-align/1d1gA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d1gA/nostruct-align/1d1gA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d1gA/nostruct-align/1d1gA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20223/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.727539
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d6aB
id: 1d6aB   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d6aB/nostruct-align/1d6aB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d6aB/nostruct-align/1d6aB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d6aB/nostruct-align/1d6aB.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18205/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.113647
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cvsC
id: 1cvsC   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cvsC/nostruct-align/1cvsC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cvsC/nostruct-align/1cvsC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cvsC/nostruct-align/1cvsC.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5087/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -16.319580
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d7qA
id: 1d7qA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d7qA/nostruct-align/1d7qA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d7qA/nostruct-align/1d7qA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d7qA/nostruct-align/1d7qA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16566/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.599609
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d8bA
id: 1d8bA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d8bA/nostruct-align/1d8bA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d8bA/nostruct-align/1d8bA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d8bA/nostruct-align/1d8bA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18683/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.173584
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d8jA
id: 1d8jA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d8jA/nostruct-align/1d8jA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d8jA/nostruct-align/1d8jA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d8jA/nostruct-align/1d8jA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-678/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.015625
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d6jA
id: 1d6jA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d6jA/nostruct-align/1d6jA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d6jA/nostruct-align/1d6jA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d6jA/nostruct-align/1d6jA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16407/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.423584
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d8dB
id: 1d8dB   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d8dB/nostruct-align/1d8dB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d8dB/nostruct-align/1d8dB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d8dB/nostruct-align/1d8dB.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17162/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.563599
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1db1A
id: 1db1A   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1db1A/nostruct-align/1db1A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1db1A/nostruct-align/1db1A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1db1A/nostruct-align/1db1A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13011/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.999634
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dbtA
id: 1dbtA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dbtA/nostruct-align/1dbtA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dbtA/nostruct-align/1dbtA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dbtA/nostruct-align/1dbtA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30184/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.939575
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cmnA
id: 1cmnA   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cmnA/nostruct-align/1cmnA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cmnA/nostruct-align/1cmnA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cmnA/nostruct-align/1cmnA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16561/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.322632
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cs0C
id: 1cs0C   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cs0C/nostruct-align/1cs0C.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cs0C/nostruct-align/1cs0C.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cs0C/nostruct-align/1cs0C.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17495/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.779541
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dd5A
id: 1dd5A   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dd5A/nostruct-align/1dd5A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dd5A/nostruct-align/1dd5A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dd5A/nostruct-align/1dd5A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5408/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.033691
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d7mA
id: 1d7mA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d7mA/nostruct-align/1d7mA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d7mA/nostruct-align/1d7mA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d7mA/nostruct-align/1d7mA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24193/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.323608
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d0bA
id: 1d0bA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d0bA/nostruct-align/1d0bA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d0bA/nostruct-align/1d0bA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d0bA/nostruct-align/1d0bA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27614/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.519531
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dcfA
id: 1dcfA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dcfA/nostruct-align/1dcfA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dcfA/nostruct-align/1dcfA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dcfA/nostruct-align/1dcfA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17028/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.003540
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1devB
id: 1devB   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1devB/nostruct-align/1devB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1devB/nostruct-align/1devB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1devB/nostruct-align/1devB.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17995/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.961548
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1deoA
id: 1deoA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1deoA/nostruct-align/1deoA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1deoA/nostruct-align/1deoA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1deoA/nostruct-align/1deoA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7371/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.618652
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d2mA
id: 1d2mA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d2mA/nostruct-align/1d2mA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d2mA/nostruct-align/1d2mA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d2mA/nostruct-align/1d2mA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32584/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.076660
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dd9A
id: 1dd9A   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dd9A/nostruct-align/1dd9A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dd9A/nostruct-align/1dd9A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dd9A/nostruct-align/1dd9A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23202/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.246582
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1df7A
id: 1df7A   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1df7A/nostruct-align/1df7A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1df7A/nostruct-align/1df7A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1df7A/nostruct-align/1df7A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13614/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.373657
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dg6A
id: 1dg6A   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dg6A/nostruct-align/1dg6A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dg6A/nostruct-align/1dg6A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dg6A/nostruct-align/1dg6A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8216/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.950562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dfmA
id: 1dfmA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dfmA/nostruct-align/1dfmA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dfmA/nostruct-align/1dfmA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dfmA/nostruct-align/1dfmA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24697/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.405640
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1devC
id: 1devC   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1devC/nostruct-align/1devC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1devC/nostruct-align/1devC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1devC/nostruct-align/1devC.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13833/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.208496
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ddzA
id: 1ddzA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1ddzA/nostruct-align/1ddzA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1ddzA/nostruct-align/1ddzA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1ddzA/nostruct-align/1ddzA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32627/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.870605
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dceA
id: 1dceA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dceA/nostruct-align/1dceA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dceA/nostruct-align/1dceA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dceA/nostruct-align/1dceA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2481/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.379639
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1di6A
id: 1di6A   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1di6A/nostruct-align/1di6A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1di6A/nostruct-align/1di6A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1di6A/nostruct-align/1di6A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12756/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.223633
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1di0A
id: 1di0A   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1di0A/nostruct-align/1di0A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1di0A/nostruct-align/1di0A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1di0A/nostruct-align/1di0A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22360/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.148560
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dioG
id: 1dioG   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dioG/nostruct-align/1dioG.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dioG/nostruct-align/1dioG.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dioG/nostruct-align/1dioG.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3545/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.962524
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dioB
id: 1dioB   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dioB/nostruct-align/1dioB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dioB/nostruct-align/1dioB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dioB/nostruct-align/1dioB.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3422/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.725586
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dj7A
id: 1dj7A   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dj7A/nostruct-align/1dj7A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dj7A/nostruct-align/1dj7A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dj7A/nostruct-align/1dj7A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26150/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.735596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dj7B
id: 1dj7B   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dj7B/nostruct-align/1dj7B.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dj7B/nostruct-align/1dj7B.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dj7B/nostruct-align/1dj7B.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16854/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.364624
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dkiA
id: 1dkiA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dkiA/nostruct-align/1dkiA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dkiA/nostruct-align/1dkiA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dkiA/nostruct-align/1dkiA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7599/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.773682
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dcqA
id: 1dcqA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dcqA/nostruct-align/1dcqA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dcqA/nostruct-align/1dcqA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dcqA/nostruct-align/1dcqA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23920/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.267578
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dioA
id: 1dioA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dioA/nostruct-align/1dioA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dioA/nostruct-align/1dioA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dioA/nostruct-align/1dioA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8306/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.394531
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dgfA
id: 1dgfA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgfA/nostruct-align/1dgfA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgfA/nostruct-align/1dgfA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dgfA/nostruct-align/1dgfA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12373/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.573608
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dkrA
id: 1dkrA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dkrA/nostruct-align/1dkrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dkrA/nostruct-align/1dkrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dkrA/nostruct-align/1dkrA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5396/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.030518
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dgyA
id: 1dgyA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgyA/nostruct-align/1dgyA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgyA/nostruct-align/1dgyA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dgyA/nostruct-align/1dgyA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6285/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.024536
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dgkN
id: 1dgkN   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dgkN/nostruct-align/1dgkN.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dgkN/nostruct-align/1dgkN.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dgkN/nostruct-align/1dgkN.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27029/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.843628
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dm9A
id: 1dm9A   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dm9A/nostruct-align/1dm9A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dm9A/nostruct-align/1dm9A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dm9A/nostruct-align/1dm9A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26716/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.462646
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dmlA
id: 1dmlA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dmlA/nostruct-align/1dmlA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dmlA/nostruct-align/1dmlA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dmlA/nostruct-align/1dmlA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12130/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.724609
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dlxA
id: 1dlxA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dlxA/nostruct-align/1dlxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dlxA/nostruct-align/1dlxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dlxA/nostruct-align/1dlxA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20531/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.421631
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dmuA
id: 1dmuA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dmuA/nostruct-align/1dmuA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dmuA/nostruct-align/1dmuA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dmuA/nostruct-align/1dmuA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29066/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.169678
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dmlB
id: 1dmlB   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dmlB/nostruct-align/1dmlB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dmlB/nostruct-align/1dmlB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dmlB/nostruct-align/1dmlB.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8270/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.925659
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dmwA
id: 1dmwA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dmwA/nostruct-align/1dmwA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dmwA/nostruct-align/1dmwA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dmwA/nostruct-align/1dmwA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18939/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.813599
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dkuA
id: 1dkuA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dkuA/nostruct-align/1dkuA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dkuA/nostruct-align/1dkuA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dkuA/nostruct-align/1dkuA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16256/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.184570
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dn1A
id: 1dn1A   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dn1A/nostruct-align/1dn1A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dn1A/nostruct-align/1dn1A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dn1A/nostruct-align/1dn1A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19438/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.872559
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dm0A
id: 1dm0A   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dm0A/nostruct-align/1dm0A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dm0A/nostruct-align/1dm0A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dm0A/nostruct-align/1dm0A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26397/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.945557
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1do6A
id: 1do6A   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1do6A/nostruct-align/1do6A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1do6A/nostruct-align/1do6A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1do6A/nostruct-align/1do6A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15626/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.376587
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1d2fA
id: 1d2fA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1d2fA/nostruct-align/1d2fA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1d2fA/nostruct-align/1d2fA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1d2fA/nostruct-align/1d2fA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13799/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.798584
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dp7P
id: 1dp7P   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dp7P/nostruct-align/1dp7P.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dp7P/nostruct-align/1dp7P.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dp7P/nostruct-align/1dp7P.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3168/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.953613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dl2A
id: 1dl2A   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dl2A/nostruct-align/1dl2A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dl2A/nostruct-align/1dl2A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dl2A/nostruct-align/1dl2A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20693/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.032593
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dn1B
id: 1dn1B   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dn1B/nostruct-align/1dn1B.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dn1B/nostruct-align/1dn1B.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dn1B/nostruct-align/1dn1B.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29566/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.383545
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dg3A
id: 1dg3A   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dg3A/nostruct-align/1dg3A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dg3A/nostruct-align/1dg3A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dg3A/nostruct-align/1dg3A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4796/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.231689
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dqbA
id: 1dqbA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dqbA/nostruct-align/1dqbA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dqbA/nostruct-align/1dqbA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dqbA/nostruct-align/1dqbA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29283/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.649658
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1drmA
id: 1drmA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1drmA/nostruct-align/1drmA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1drmA/nostruct-align/1drmA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1drmA/nostruct-align/1drmA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7374/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.801636
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dsvA
id: 1dsvA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dsvA/nostruct-align/1dsvA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dsvA/nostruct-align/1dsvA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dsvA/nostruct-align/1dsvA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5027/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.959595
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dkvA
id: 1dkvA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dkvA/nostruct-align/1dkvA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dkvA/nostruct-align/1dkvA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dkvA/nostruct-align/1dkvA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22626/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.520630
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dqwA
id: 1dqwA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dqwA/nostruct-align/1dqwA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dqwA/nostruct-align/1dqwA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dqwA/nostruct-align/1dqwA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12367/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.230591
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dozA
id: 1dozA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dozA/nostruct-align/1dozA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dozA/nostruct-align/1dozA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dozA/nostruct-align/1dozA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30594/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.930664
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dt8A
id: 1dt8A   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dt8A/nostruct-align/1dt8A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dt8A/nostruct-align/1dt8A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dt8A/nostruct-align/1dt8A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2994/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.056641
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dt4A
id: 1dt4A   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dt4A/nostruct-align/1dt4A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dt4A/nostruct-align/1dt4A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dt4A/nostruct-align/1dt4A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14922/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.257568
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dtoA
id: 1dtoA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dtoA/nostruct-align/1dtoA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dtoA/nostruct-align/1dtoA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dtoA/nostruct-align/1dtoA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13562/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.834595
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dqrA
id: 1dqrA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dqrA/nostruct-align/1dqrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dqrA/nostruct-align/1dqrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dqrA/nostruct-align/1dqrA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29334/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.266602
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dt9A
id: 1dt9A   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dt9A/nostruct-align/1dt9A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dt9A/nostruct-align/1dt9A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dt9A/nostruct-align/1dt9A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32361/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.615601
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dugA
id: 1dugA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dugA/nostruct-align/1dugA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dugA/nostruct-align/1dugA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dugA/nostruct-align/1dugA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10386/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.527588
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dqaA
id: 1dqaA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dqaA/nostruct-align/1dqaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dqaA/nostruct-align/1dqaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dqaA/nostruct-align/1dqaA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27997/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.501587
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dtgA
id: 1dtgA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dtgA/nostruct-align/1dtgA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dtgA/nostruct-align/1dtgA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dtgA/nostruct-align/1dtgA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-833/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.649536
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dulA
id: 1dulA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dulA/nostruct-align/1dulA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dulA/nostruct-align/1dulA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dulA/nostruct-align/1dulA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18697/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.206543
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dpo
id: 1dpo   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dpo/nostruct-align/1dpo.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dpo/nostruct-align/1dpo.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dpo/nostruct-align/1dpo.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1716/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.800659
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dv0A
id: 1dv0A   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dv0A/nostruct-align/1dv0A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dv0A/nostruct-align/1dv0A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dv0A/nostruct-align/1dv0A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1564/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.455688
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dr8B
id: 1dr8B   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dr8B/nostruct-align/1dr8B.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dr8B/nostruct-align/1dr8B.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dr8B/nostruct-align/1dr8B.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5863/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.846558
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dujA
id: 1dujA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dujA/nostruct-align/1dujA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dujA/nostruct-align/1dujA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dujA/nostruct-align/1dujA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3911/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.949585
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dvkA
id: 1dvkA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dvkA/nostruct-align/1dvkA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dvkA/nostruct-align/1dvkA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dvkA/nostruct-align/1dvkA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19900/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.790527
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dwnA
id: 1dwnA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dwnA/nostruct-align/1dwnA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dwnA/nostruct-align/1dwnA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dwnA/nostruct-align/1dwnA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3571/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.668579
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dvjA
id: 1dvjA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dvjA/nostruct-align/1dvjA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dvjA/nostruct-align/1dvjA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dvjA/nostruct-align/1dvjA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30534/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.023560
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1do0A
id: 1do0A   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1do0A/nostruct-align/1do0A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1do0A/nostruct-align/1do0A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1do0A/nostruct-align/1do0A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17502/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.959595
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dvpA
id: 1dvpA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dvpA/nostruct-align/1dvpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dvpA/nostruct-align/1dvpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dvpA/nostruct-align/1dvpA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6970/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.595581
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dxzA
id: 1dxzA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dxzA/nostruct-align/1dxzA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dxzA/nostruct-align/1dxzA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dxzA/nostruct-align/1dxzA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3643/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.807617
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dy5A
id: 1dy5A   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dy5A/nostruct-align/1dy5A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dy5A/nostruct-align/1dy5A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dy5A/nostruct-align/1dy5A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3403/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.979614
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dx7A
id: 1dx7A   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dx7A/nostruct-align/1dx7A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dx7A/nostruct-align/1dx7A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dx7A/nostruct-align/1dx7A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6023/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.646606
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dtyA
id: 1dtyA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dtyA/nostruct-align/1dtyA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dtyA/nostruct-align/1dtyA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dtyA/nostruct-align/1dtyA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.059570
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dwtA
id: 1dwtA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dwtA/nostruct-align/1dwtA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dwtA/nostruct-align/1dwtA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dwtA/nostruct-align/1dwtA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9383/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.756592
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1e0aB
id: 1e0aB   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1e0aB/nostruct-align/1e0aB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1e0aB/nostruct-align/1e0aB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1e0aB/nostruct-align/1e0aB.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1361/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.900635
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1duzB
id: 1duzB   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1duzB/nostruct-align/1duzB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1duzB/nostruct-align/1duzB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1duzB/nostruct-align/1duzB.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16310/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.078613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dz1A
id: 1dz1A   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dz1A/nostruct-align/1dz1A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dz1A/nostruct-align/1dz1A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dz1A/nostruct-align/1dz1A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22611/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.338501
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dzrA
id: 1dzrA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dzrA/nostruct-align/1dzrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dzrA/nostruct-align/1dzrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dzrA/nostruct-align/1dzrA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20420/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.942627
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dz3A
id: 1dz3A   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dz3A/nostruct-align/1dz3A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dz3A/nostruct-align/1dz3A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dz3A/nostruct-align/1dz3A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7227/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.974487
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dx5I
id: 1dx5I   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dx5I/nostruct-align/1dx5I.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dx5I/nostruct-align/1dx5I.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dx5I/nostruct-align/1dx5I.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3638/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.907593
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dzlA
id: 1dzlA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dzlA/nostruct-align/1dzlA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dzlA/nostruct-align/1dzlA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dzlA/nostruct-align/1dzlA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21221/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.290649
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ecxA
id: 1ecxA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ecxA/nostruct-align/1ecxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ecxA/nostruct-align/1ecxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1ecxA/nostruct-align/1ecxA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2676/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.353638
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ebmA
id: 1ebmA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ebmA/nostruct-align/1ebmA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ebmA/nostruct-align/1ebmA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1ebmA/nostruct-align/1ebmA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27874/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.710693
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1eesB
id: 1eesB   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eesB/nostruct-align/1eesB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eesB/nostruct-align/1eesB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1eesB/nostruct-align/1eesB.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29806/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.002686
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1egpB
id: 1egpB   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1egpB/nostruct-align/1egpB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1egpB/nostruct-align/1egpB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1egpB/nostruct-align/1egpB.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31618/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.243530
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1efiD
id: 1efiD   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1efiD/nostruct-align/1efiD.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1efiD/nostruct-align/1efiD.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1efiD/nostruct-align/1efiD.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5129/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.023560
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ebuA
id: 1ebuA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ebuA/nostruct-align/1ebuA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ebuA/nostruct-align/1ebuA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1ebuA/nostruct-align/1ebuA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8057/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.922607
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ej5A
id: 1ej5A   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ej5A/nostruct-align/1ej5A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ej5A/nostruct-align/1ej5A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1ej5A/nostruct-align/1ej5A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25553/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.775513
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1eblA
id: 1eblA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eblA/nostruct-align/1eblA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eblA/nostruct-align/1eblA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1eblA/nostruct-align/1eblA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16462/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.715698
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1efdN
id: 1efdN   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1efdN/nostruct-align/1efdN.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1efdN/nostruct-align/1efdN.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1efdN/nostruct-align/1efdN.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16362/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.242676
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ei9A
id: 1ei9A   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ei9A/nostruct-align/1ei9A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ei9A/nostruct-align/1ei9A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1ei9A/nostruct-align/1ei9A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26054/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.591675
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ejkA
id: 1ejkA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ejkA/nostruct-align/1ejkA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ejkA/nostruct-align/1ejkA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1ejkA/nostruct-align/1ejkA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32581/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.069580
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ej8A
id: 1ej8A   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ej8A/nostruct-align/1ej8A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ej8A/nostruct-align/1ej8A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1ej8A/nostruct-align/1ej8A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29021/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.336670
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ejgA
id: 1ejgA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ejgA/nostruct-align/1ejgA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ejgA/nostruct-align/1ejgA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1ejgA/nostruct-align/1ejgA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30307/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.441650
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ejhA
id: 1ejhA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ejhA/nostruct-align/1ejhA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ejhA/nostruct-align/1ejhA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1ejhA/nostruct-align/1ejhA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30358/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.169556
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ekcC
id: 1ekcC   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ekcC/nostruct-align/1ekcC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ekcC/nostruct-align/1ekcC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1ekcC/nostruct-align/1ekcC.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19677/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.443604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1el6B
id: 1el6B   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1el6B/nostruct-align/1el6B.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1el6B/nostruct-align/1el6B.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1el6B/nostruct-align/1el6B.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32418/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.437622
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ee4A
id: 1ee4A   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ee4A/nostruct-align/1ee4A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ee4A/nostruct-align/1ee4A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1ee4A/nostruct-align/1ee4A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25739/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.272583
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1elkA
id: 1elkA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1elkA/nostruct-align/1elkA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1elkA/nostruct-align/1elkA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1elkA/nostruct-align/1elkA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19784/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.063599
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1duzA
id: 1duzA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1duzA/nostruct-align/1duzA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1duzA/nostruct-align/1duzA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1duzA/nostruct-align/1duzA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6018/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.094604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1edqA
id: 1edqA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1edqA/nostruct-align/1edqA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1edqA/nostruct-align/1edqA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1edqA/nostruct-align/1edqA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26159/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.308594
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ek0A
id: 1ek0A   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ek0A/nostruct-align/1ek0A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ek0A/nostruct-align/1ek0A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1ek0A/nostruct-align/1ek0A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25562/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.710571
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1en7A
id: 1en7A   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1en7A/nostruct-align/1en7A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1en7A/nostruct-align/1en7A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1en7A/nostruct-align/1en7A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11833/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.738525
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1enwA
id: 1enwA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1enwA/nostruct-align/1enwA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1enwA/nostruct-align/1enwA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1enwA/nostruct-align/1enwA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14058/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.974609
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fbnA
id: 1fbnA   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fbnA/nostruct-align/1fbnA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fbnA/nostruct-align/1fbnA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fbnA/nostruct-align/1fbnA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16223/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.178589
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1eiyB
id: 1eiyB   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eiyB/nostruct-align/1eiyB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eiyB/nostruct-align/1eiyB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1eiyB/nostruct-align/1eiyB.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16289/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.156616
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1elwA
id: 1elwA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1elwA/nostruct-align/1elwA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1elwA/nostruct-align/1elwA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1elwA/nostruct-align/1elwA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29380/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.474609
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1et9A
id: 1et9A   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1et9A/nostruct-align/1et9A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1et9A/nostruct-align/1et9A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1et9A/nostruct-align/1et9A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24286/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.110596
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1enfA
id: 1enfA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1enfA/nostruct-align/1enfA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1enfA/nostruct-align/1enfA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1enfA/nostruct-align/1enfA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3401/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.586548
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1elrA
id: 1elrA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1elrA/nostruct-align/1elrA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1elrA/nostruct-align/1elrA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1elrA/nostruct-align/1elrA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8313/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.685547
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1flmA
id: 1flmA   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1flmA/nostruct-align/1flmA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1flmA/nostruct-align/1flmA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1flmA/nostruct-align/1flmA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27506/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.569580
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1flcB
id: 1flcB   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1flcB/nostruct-align/1flcB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1flcB/nostruct-align/1flcB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1flcB/nostruct-align/1flcB.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22261/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.423584
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gyfA
id: 1gyfA   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gyfA/nostruct-align/1gyfA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gyfA/nostruct-align/1gyfA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gyfA/nostruct-align/1gyfA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15273/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.249512
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hcb
id: 1hcb   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hcb/nostruct-align/1hcb.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hcb/nostruct-align/1hcb.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hcb/nostruct-align/1hcb.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12384/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.286621
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1flcA
id: 1flcA   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1flcA/nostruct-align/1flcA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1flcA/nostruct-align/1flcA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1flcA/nostruct-align/1flcA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-470/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.380615
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hpy
id: 1hpy   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hpy/nostruct-align/1hpy.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hpy/nostruct-align/1hpy.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hpy/nostruct-align/1hpy.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29177/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.931641
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hlgA
id: 1hlgA   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hlgA/nostruct-align/1hlgA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hlgA/nostruct-align/1hlgA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hlgA/nostruct-align/1hlgA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2225/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.934570
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hpgA
id: 1hpgA   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hpgA/nostruct-align/1hpgA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hpgA/nostruct-align/1hpgA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hpgA/nostruct-align/1hpgA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22252/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.709595
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1h2rL
id: 1h2rL   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1h2rL/nostruct-align/1h2rL.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1h2rL/nostruct-align/1h2rL.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1h2rL/nostruct-align/1h2rL.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2258/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.200562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1elqA
id: 1elqA   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1elqA/nostruct-align/1elqA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1elqA/nostruct-align/1elqA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1elqA/nostruct-align/1elqA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3175/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -16.607666
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dttA
id: 1dttA   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dttA/nostruct-align/1dttA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dttA/nostruct-align/1dttA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dttA/nostruct-align/1dttA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25638/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.786621
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1iuz
id: 1iuz   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iuz/nostruct-align/1iuz.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iuz/nostruct-align/1iuz.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1iuz/nostruct-align/1iuz.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27141/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.389648
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1icfB
id: 1icfB   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1icfB/nostruct-align/1icfB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1icfB/nostruct-align/1icfB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1icfB/nostruct-align/1icfB.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7112/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.055542
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1joyA
id: 1joyA   alignment found: /projects/compbio/experiments/models.97/pdb/1j/1joyA/nostruct-align/1joyA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1joyA/nostruct-align/1joyA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1j/1joyA/nostruct-align/1joyA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11280/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.630615
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1iro
id: 1iro   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iro/nostruct-align/1iro.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iro/nostruct-align/1iro.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1iro/nostruct-align/1iro.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15358/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.198608
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1jcv
id: 1jcv   alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jcv/nostruct-align/1jcv.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jcv/nostruct-align/1jcv.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1j/1jcv/nostruct-align/1jcv.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30186/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.499512
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gtxA
id: 1gtxA   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gtxA/nostruct-align/1gtxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gtxA/nostruct-align/1gtxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gtxA/nostruct-align/1gtxA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21333/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.526489
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1jsf
id: 1jsf   alignment found: /projects/compbio/experiments/models.97/pdb/1j/1jsf/nostruct-align/1jsf.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1j/1jsf/nostruct-align/1jsf.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1j/1jsf/nostruct-align/1jsf.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16614/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.893555
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lmq
id: 1lmq   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lmq/nostruct-align/1lmq.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lmq/nostruct-align/1lmq.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lmq/nostruct-align/1lmq.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26332/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.875610
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mwpA
id: 1mwpA   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mwpA/nostruct-align/1mwpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mwpA/nostruct-align/1mwpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mwpA/nostruct-align/1mwpA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7411/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.896606
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1npsA
id: 1npsA   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1npsA/nostruct-align/1npsA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1npsA/nostruct-align/1npsA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1npsA/nostruct-align/1npsA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18352/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.193604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nfiA
id: 1nfiA   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nfiA/nostruct-align/1nfiA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nfiA/nostruct-align/1nfiA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nfiA/nostruct-align/1nfiA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31132/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.163574
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1om2A
id: 1om2A   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1om2A/nostruct-align/1om2A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1om2A/nostruct-align/1om2A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1om2A/nostruct-align/1om2A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-751/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.439575
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1iarB
id: 1iarB   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1iarB/nostruct-align/1iarB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1iarB/nostruct-align/1iarB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1iarB/nostruct-align/1iarB.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15552/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.510620
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pszA
id: 1pszA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pszA/nostruct-align/1pszA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pszA/nostruct-align/1pszA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pszA/nostruct-align/1pszA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2788/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.861572
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1nnt
id: 1nnt   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1nnt/nostruct-align/1nnt.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1nnt/nostruct-align/1nnt.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1nnt/nostruct-align/1nnt.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21503/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.705566
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1pvxA
id: 1pvxA   alignment found: /projects/compbio/experiments/models.97/pdb/1p/1pvxA/nostruct-align/1pvxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1p/1pvxA/nostruct-align/1pvxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1p/1pvxA/nostruct-align/1pvxA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17833/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.976563
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qf8A
id: 1qf8A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qf8A/nostruct-align/1qf8A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qf8A/nostruct-align/1qf8A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qf8A/nostruct-align/1qf8A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8147/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.274658
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qftA
id: 1qftA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qftA/nostruct-align/1qftA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qftA/nostruct-align/1qftA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qftA/nostruct-align/1qftA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3047/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.084595
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qfnA
id: 1qfnA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qfnA/nostruct-align/1qfnA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qfnA/nostruct-align/1qfnA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qfnA/nostruct-align/1qfnA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31957/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.566528
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qfeA
id: 1qfeA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qfeA/nostruct-align/1qfeA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qfeA/nostruct-align/1qfeA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qfeA/nostruct-align/1qfeA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8744/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.454590
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qghA
id: 1qghA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qghA/nostruct-align/1qghA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qghA/nostruct-align/1qghA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qghA/nostruct-align/1qghA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5569/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.875610
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1oasA
id: 1oasA   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1oasA/nostruct-align/1oasA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1oasA/nostruct-align/1oasA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1oasA/nostruct-align/1oasA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18185/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -14.081665
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qfxA
id: 1qfxA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qfxA/nostruct-align/1qfxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qfxA/nostruct-align/1qfxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qfxA/nostruct-align/1qfxA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1806/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.821533
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ql1A
id: 1ql1A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1ql1A/nostruct-align/1ql1A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1ql1A/nostruct-align/1ql1A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1ql1A/nostruct-align/1ql1A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-1957/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.154663
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qldA
id: 1qldA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qldA/nostruct-align/1qldA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qldA/nostruct-align/1qldA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qldA/nostruct-align/1qldA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29791/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.341553
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qloA
id: 1qloA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qloA/nostruct-align/1qloA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qloA/nostruct-align/1qloA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qloA/nostruct-align/1qloA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14746/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.192627
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qlgA
id: 1qlgA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qlgA/nostruct-align/1qlgA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qlgA/nostruct-align/1qlgA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qlgA/nostruct-align/1qlgA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-18712/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.413574
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qlwA
id: 1qlwA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qlwA/nostruct-align/1qlwA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qlwA/nostruct-align/1qlwA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qlwA/nostruct-align/1qlwA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31474/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.396606
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qagA
id: 1qagA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qagA/nostruct-align/1qagA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qagA/nostruct-align/1qagA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qagA/nostruct-align/1qagA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6372/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.882690
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fepA
id: 1fepA   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fepA/nostruct-align/1fepA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fepA/nostruct-align/1fepA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fepA/nostruct-align/1fepA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-3469/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -32.881592
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qg8A
id: 1qg8A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qg8A/nostruct-align/1qg8A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qg8A/nostruct-align/1qg8A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qg8A/nostruct-align/1qg8A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19624/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -17.398560
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qlzA
id: 1qlzA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qlzA/nostruct-align/1qlzA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qlzA/nostruct-align/1qlzA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qlzA/nostruct-align/1qlzA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14494/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.494507
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qm3A
id: 1qm3A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qm3A/nostruct-align/1qm3A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qm3A/nostruct-align/1qm3A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qm3A/nostruct-align/1qm3A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9992/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.555664
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qm1A
id: 1qm1A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qm1A/nostruct-align/1qm1A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qm1A/nostruct-align/1qm1A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qm1A/nostruct-align/1qm1A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28862/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.552612
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qlyA
id: 1qlyA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qlyA/nostruct-align/1qlyA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qlyA/nostruct-align/1qlyA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qlyA/nostruct-align/1qlyA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9890/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.303589
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qmhA
id: 1qmhA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qmhA/nostruct-align/1qmhA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qmhA/nostruct-align/1qmhA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qmhA/nostruct-align/1qmhA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23870/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.867554
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qnaA
id: 1qnaA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qnaA/nostruct-align/1qnaA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qnaA/nostruct-align/1qnaA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qnaA/nostruct-align/1qnaA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28100/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.550659
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qo3C
id: 1qo3C   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qo3C/nostruct-align/1qo3C.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qo3C/nostruct-align/1qo3C.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qo3C/nostruct-align/1qo3C.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31829/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.560669
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qgxA
id: 1qgxA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qgxA/nostruct-align/1qgxA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qgxA/nostruct-align/1qgxA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qgxA/nostruct-align/1qgxA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2811/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.822632
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qoiA
id: 1qoiA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qoiA/nostruct-align/1qoiA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qoiA/nostruct-align/1qoiA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qoiA/nostruct-align/1qoiA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28748/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.004639
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qouA
id: 1qouA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qouA/nostruct-align/1qouA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qouA/nostruct-align/1qouA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qouA/nostruct-align/1qouA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7633/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.307617
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mctA
id: 1mctA   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mctA/nostruct-align/1mctA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mctA/nostruct-align/1mctA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mctA/nostruct-align/1mctA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27903/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.601685
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1gsoA
id: 1gsoA   alignment found: /projects/compbio/experiments/models.97/pdb/1g/1gsoA/nostruct-align/1gsoA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1g/1gsoA/nostruct-align/1gsoA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1g/1gsoA/nostruct-align/1gsoA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23549/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.134644
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qqvA
id: 1qqvA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qqvA/nostruct-align/1qqvA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qqvA/nostruct-align/1qqvA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qqvA/nostruct-align/1qqvA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27038/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.690674
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qoyA
id: 1qoyA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qoyA/nostruct-align/1qoyA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qoyA/nostruct-align/1qoyA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qoyA/nostruct-align/1qoyA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-20439/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.330566
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qo7A
id: 1qo7A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qo7A/nostruct-align/1qo7A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qo7A/nostruct-align/1qo7A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qo7A/nostruct-align/1qo7A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25189/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.631592
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qsmA
id: 1qsmA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qsmA/nostruct-align/1qsmA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qsmA/nostruct-align/1qsmA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qsmA/nostruct-align/1qsmA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17469/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.531616
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qmgA
id: 1qmgA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qmgA/nostruct-align/1qmgA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qmgA/nostruct-align/1qmgA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qmgA/nostruct-align/1qmgA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10857/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.701538
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qu5A
id: 1qu5A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qu5A/nostruct-align/1qu5A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qu5A/nostruct-align/1qu5A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qu5A/nostruct-align/1qu5A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24852/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.212646
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qu8A
id: 1qu8A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qu8A/nostruct-align/1qu8A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qu8A/nostruct-align/1qu8A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qu8A/nostruct-align/1qu8A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8124/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.226562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qsdA
id: 1qsdA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qsdA/nostruct-align/1qsdA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qsdA/nostruct-align/1qsdA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qsdA/nostruct-align/1qsdA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21104/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.092651
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qu1A
id: 1qu1A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qu1A/nostruct-align/1qu1A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qu1A/nostruct-align/1qu1A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qu1A/nostruct-align/1qu1A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-604/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.223633
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qu6A
id: 1qu6A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qu6A/nostruct-align/1qu6A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qu6A/nostruct-align/1qu6A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qu6A/nostruct-align/1qu6A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-14492/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.492554
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rdg
id: 1rdg   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rdg/nostruct-align/1rdg.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rdg/nostruct-align/1rdg.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rdg/nostruct-align/1rdg.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6918/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.168579
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qoxN
id: 1qoxN   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qoxN/nostruct-align/1qoxN.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qoxN/nostruct-align/1qoxN.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qoxN/nostruct-align/1qoxN.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24423/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.555664
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sn4A
id: 1sn4A   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sn4A/nostruct-align/1sn4A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sn4A/nostruct-align/1sn4A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sn4A/nostruct-align/1sn4A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25421/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.013550
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qnjA
id: 1qnjA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qnjA/nostruct-align/1qnjA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qnjA/nostruct-align/1qnjA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qnjA/nostruct-align/1qnjA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-10040/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.702637
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1une
id: 1une   alignment found: /projects/compbio/experiments/models.97/pdb/1u/1une/nostruct-align/1une.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1u/1une/nostruct-align/1une.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1u/1une/nostruct-align/1une.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12098/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.001587
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1repC
id: 1repC   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1repC/nostruct-align/1repC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1repC/nostruct-align/1repC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1repC/nostruct-align/1repC.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-27065/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.415527
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1xypA
id: 1xypA   alignment found: /projects/compbio/experiments/models.97/pdb/1x/1xypA/nostruct-align/1xypA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1x/1xypA/nostruct-align/1xypA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1x/1xypA/nostruct-align/1xypA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19843/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.011597
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2afpA
id: 2afpA   alignment found: /projects/compbio/experiments/models.97/pdb/2a/2afpA/nostruct-align/2afpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2afpA/nostruct-align/2afpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2a/2afpA/nostruct-align/2afpA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6651/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.702515
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2alcA
id: 2alcA   alignment found: /projects/compbio/experiments/models.97/pdb/2a/2alcA/nostruct-align/2alcA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2a/2alcA/nostruct-align/2alcA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2a/2alcA/nostruct-align/2alcA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17072/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.378662
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1sup
id: 1sup   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1sup/nostruct-align/1sup.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1sup/nostruct-align/1sup.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1sup/nostruct-align/1sup.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15142/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -15.743530
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2btcI
id: 2btcI   alignment found: /projects/compbio/experiments/models.97/pdb/2b/2btcI/nostruct-align/2btcI.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2btcI/nostruct-align/2btcI.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2b/2btcI/nostruct-align/2btcI.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11105/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.703613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2bidA
id: 2bidA   alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bidA/nostruct-align/2bidA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bidA/nostruct-align/2bidA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2b/2bidA/nostruct-align/2bidA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-2749/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.844604
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2bvwA
id: 2bvwA   alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bvwA/nostruct-align/2bvwA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bvwA/nostruct-align/2bvwA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2b/2bvwA/nostruct-align/2bvwA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31917/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.841553
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1larA
id: 1larA   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1larA/nostruct-align/1larA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1larA/nostruct-align/1larA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1larA/nostruct-align/1larA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28918/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.275513
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1yrgA
id: 1yrgA   alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yrgA/nostruct-align/1yrgA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yrgA/nostruct-align/1yrgA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1y/1yrgA/nostruct-align/1yrgA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31990/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.374634
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2dpmA
id: 2dpmA   alignment found: /projects/compbio/experiments/models.97/pdb/2d/2dpmA/nostruct-align/2dpmA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2d/2dpmA/nostruct-align/2dpmA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2d/2dpmA/nostruct-align/2dpmA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28610/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.705688
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qqtA
id: 1qqtA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qqtA/nostruct-align/1qqtA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qqtA/nostruct-align/1qqtA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qqtA/nostruct-align/1qqtA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-23072/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.374634
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2lisA
id: 2lisA   alignment found: /projects/compbio/experiments/models.97/pdb/2l/2lisA/nostruct-align/2lisA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2lisA/nostruct-align/2lisA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2l/2lisA/nostruct-align/2lisA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17284/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.942505
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2fcbA
id: 2fcbA   alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fcbA/nostruct-align/2fcbA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fcbA/nostruct-align/2fcbA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2f/2fcbA/nostruct-align/2fcbA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31941/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.567505
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2plt
id: 2plt   alignment found: /projects/compbio/experiments/models.97/pdb/2p/2plt/nostruct-align/2plt.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2plt/nostruct-align/2plt.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2p/2plt/nostruct-align/2plt.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29879/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.679688
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2cb5A
id: 2cb5A   alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cb5A/nostruct-align/2cb5A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cb5A/nostruct-align/2cb5A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2c/2cb5A/nostruct-align/2cb5A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12676/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.127563
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2sfa
id: 2sfa   alignment found: /projects/compbio/experiments/models.97/pdb/2s/2sfa/nostruct-align/2sfa.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2sfa/nostruct-align/2sfa.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2s/2sfa/nostruct-align/2sfa.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8973/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -16.942627
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1yrgB
id: 1yrgB   alignment found: /projects/compbio/experiments/models.97/pdb/1y/1yrgB/nostruct-align/1yrgB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1y/1yrgB/nostruct-align/1yrgB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1y/1yrgB/nostruct-align/1yrgB.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25261/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.447632
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3ovo
id: 3ovo   alignment found: /projects/compbio/experiments/models.97/pdb/3o/3ovo/nostruct-align/3ovo.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3o/3ovo/nostruct-align/3ovo.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3o/3ovo/nostruct-align/3ovo.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25993/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.575562
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3ygsP
id: 3ygsP   alignment found: /projects/compbio/experiments/models.97/pdb/3y/3ygsP/nostruct-align/3ygsP.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3y/3ygsP/nostruct-align/3ygsP.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3y/3ygsP/nostruct-align/3ygsP.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-6326/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.130615
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2fnbA
id: 2fnbA   alignment found: /projects/compbio/experiments/models.97/pdb/2f/2fnbA/nostruct-align/2fnbA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2f/2fnbA/nostruct-align/2fnbA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2f/2fnbA/nostruct-align/2fnbA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-9897/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.854614
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4ubpA
id: 4ubpA   alignment found: /projects/compbio/experiments/models.97/pdb/4u/4ubpA/nostruct-align/4ubpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/4u/4ubpA/nostruct-align/4ubpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/4u/4ubpA/nostruct-align/4ubpA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32680/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.769653
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 487dL
id: 487dL   alignment found: /projects/compbio/experiments/models.97/pdb/48/487dL/nostruct-align/487dL.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/48/487dL/nostruct-align/487dL.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/48/487dL/nostruct-align/487dL.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26551/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.052612
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4ubpB
id: 4ubpB   alignment found: /projects/compbio/experiments/models.97/pdb/4u/4ubpB/nostruct-align/4ubpB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/4u/4ubpB/nostruct-align/4ubpB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/4u/4ubpB/nostruct-align/4ubpB.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19333/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.812622
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qmmA
id: 1qmmA   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qmmA/nostruct-align/1qmmA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qmmA/nostruct-align/1qmmA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qmmA/nostruct-align/1qmmA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16091/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.475586
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 6rxn
id: 6rxn   alignment found: /projects/compbio/experiments/models.97/pdb/6r/6rxn/nostruct-align/6rxn.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/6r/6rxn/nostruct-align/6rxn.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/6r/6rxn/nostruct-align/6rxn.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-11148/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.145508
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4ubpC
id: 4ubpC   alignment found: /projects/compbio/experiments/models.97/pdb/4u/4ubpC/nostruct-align/4ubpC.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/4u/4ubpC/nostruct-align/4ubpC.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/4u/4ubpC/nostruct-align/4ubpC.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22516/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.160645
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2er7E
id: 2er7E   alignment found: /projects/compbio/experiments/models.97/pdb/2e/2er7E/nostruct-align/2er7E.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2e/2er7E/nostruct-align/2er7E.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2e/2er7E/nostruct-align/2er7E.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-25071/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.968628
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 5tmpA
id: 5tmpA   alignment found: /projects/compbio/experiments/models.97/pdb/5t/5tmpA/nostruct-align/5tmpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/5t/5tmpA/nostruct-align/5tmpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/5t/5tmpA/nostruct-align/5tmpA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28047/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.138550
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 7atjA
id: 7atjA   alignment found: /projects/compbio/experiments/models.97/pdb/7a/7atjA/nostruct-align/7atjA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/7a/7atjA/nostruct-align/7atjA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/7a/7atjA/nostruct-align/7atjA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-8088/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.858521
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4uagA
id: 4uagA   alignment found: /projects/compbio/experiments/models.97/pdb/4u/4uagA/nostruct-align/4uagA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/4u/4uagA/nostruct-align/4uagA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/4u/4uagA/nostruct-align/4uagA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17589/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.656616
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 32c2A
id: 32c2A   alignment found: /projects/compbio/experiments/models.97/pdb/32/32c2A/nostruct-align/32c2A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/32/32c2A/nostruct-align/32c2A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/32/32c2A/nostruct-align/32c2A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26285/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.225586
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1dceB
id: 1dceB   alignment found: /projects/compbio/experiments/models.97/pdb/1d/1dceB/nostruct-align/1dceB.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1d/1dceB/nostruct-align/1dceB.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1d/1dceB/nostruct-align/1dceB.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16766/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.465698
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1qa1A
id: 1qa1A   alignment found: /projects/compbio/experiments/models.97/pdb/1q/1qa1A/nostruct-align/1qa1A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1q/1qa1A/nostruct-align/1qa1A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1q/1qa1A/nostruct-align/1qa1A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31080/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -15.947632
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1cgt
id: 1cgt   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1cgt/nostruct-align/1cgt.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1cgt/nostruct-align/1cgt.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1cgt/nostruct-align/1cgt.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-28996/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -20.791626
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1crl
id: 1crl   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1crl/nostruct-align/1crl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1crl/nostruct-align/1crl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1crl/nostruct-align/1crl.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-16110/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.542603
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fdd
id: 1fdd   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fdd/nostruct-align/1fdd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fdd/nostruct-align/1fdd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fdd/nostruct-align/1fdd.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-32376/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.299683
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mrt
id: 1mrt   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mrt/nostruct-align/1mrt.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mrt/nostruct-align/1mrt.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mrt/nostruct-align/1mrt.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24933/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -5.898560
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ofv
id: 1ofv   alignment found: /projects/compbio/experiments/models.97/pdb/1o/1ofv/nostruct-align/1ofv.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1o/1ofv/nostruct-align/1ofv.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1o/1ofv/nostruct-align/1ofv.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7178/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.254517
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1s01
id: 1s01   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1s01/nostruct-align/1s01.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1s01/nostruct-align/1s01.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1s01/nostruct-align/1s01.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7402/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -16.658569
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3adk
id: 3adk   alignment found: /projects/compbio/experiments/models.97/pdb/3a/3adk/nostruct-align/3adk.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3a/3adk/nostruct-align/3adk.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3a/3adk/nostruct-align/3adk.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-31837/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.151611
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3egf
id: 3egf   alignment found: /projects/compbio/experiments/models.97/pdb/3e/3egf/nostruct-align/3egf.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3e/3egf/nostruct-align/3egf.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3e/3egf/nostruct-align/3egf.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30387/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.292603
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1caj
id: 1caj   alignment found: /projects/compbio/experiments/models.97/pdb/1c/1caj/nostruct-align/1caj.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1c/1caj/nostruct-align/1caj.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1c/1caj/nostruct-align/1caj.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30674/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.404663
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1eco
id: 1eco   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1eco/nostruct-align/1eco.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1eco/nostruct-align/1eco.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1eco/nostruct-align/1eco.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-7670/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.527588
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1fha
id: 1fha   alignment found: /projects/compbio/experiments/models.97/pdb/1f/1fha/nostruct-align/1fha.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1f/1fha/nostruct-align/1fha.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1f/1fha/nostruct-align/1fha.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26021/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.055664
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1hra
id: 1hra   alignment found: /projects/compbio/experiments/models.97/pdb/1h/1hra/nostruct-align/1hra.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1h/1hra/nostruct-align/1hra.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1h/1hra/nostruct-align/1hra.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-17422/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.887695
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ipd
id: 1ipd   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ipd/nostruct-align/1ipd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ipd/nostruct-align/1ipd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1ipd/nostruct-align/1ipd.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-5292/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.740601
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ixa
id: 1ixa   alignment found: /projects/compbio/experiments/models.97/pdb/1i/1ixa/nostruct-align/1ixa.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1i/1ixa/nostruct-align/1ixa.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1i/1ixa/nostruct-align/1ixa.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-30407/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -6.034546
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1le4
id: 1le4   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1le4/nostruct-align/1le4.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1l/1le4/nostruct-align/1le4.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1le4/nostruct-align/1le4.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-12346/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.479614
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1mgn
id: 1mgn   alignment found: /projects/compbio/experiments/models.97/pdb/1m/1mgn/nostruct-align/1mgn.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1m/1mgn/nostruct-align/1mgn.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1m/1mgn/nostruct-align/1mgn.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-22160/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.710693
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ndk
id: 1ndk   alignment found: /projects/compbio/experiments/models.97/pdb/1n/1ndk/nostruct-align/1ndk.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1n/1ndk/nostruct-align/1ndk.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1n/1ndk/nostruct-align/1ndk.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19123/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.144531
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1rnd
id: 1rnd   alignment found: /projects/compbio/experiments/models.97/pdb/1r/1rnd/nostruct-align/1rnd.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1r/1rnd/nostruct-align/1rnd.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1r/1rnd/nostruct-align/1rnd.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-15525/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.980591
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1spa
id: 1spa   alignment found: /projects/compbio/experiments/models.97/pdb/1s/1spa/nostruct-align/1spa.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1s/1spa/nostruct-align/1spa.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1s/1spa/nostruct-align/1spa.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24279/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.215576
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2ihl
id: 2ihl   alignment found: /projects/compbio/experiments/models.97/pdb/2i/2ihl/nostruct-align/2ihl.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2i/2ihl/nostruct-align/2ihl.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2i/2ihl/nostruct-align/2ihl.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-13904/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.729614
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2lh2
id: 2lh2   alignment found: /projects/compbio/experiments/models.97/pdb/2l/2lh2/nostruct-align/2lh2.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2l/2lh2/nostruct-align/2lh2.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2l/2lh2/nostruct-align/2lh2.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-19701/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -9.598511
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2pf1
id: 2pf1   alignment found: /projects/compbio/experiments/models.97/pdb/2p/2pf1/nostruct-align/2pf1.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2p/2pf1/nostruct-align/2pf1.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2p/2pf1/nostruct-align/2pf1.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26780/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.212646
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2spo
id: 2spo   alignment found: /projects/compbio/experiments/models.97/pdb/2s/2spo/nostruct-align/2spo.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2s/2spo/nostruct-align/2spo.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2s/2spo/nostruct-align/2spo.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24770/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.677612
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3cd4
id: 3cd4   alignment found: /projects/compbio/experiments/models.97/pdb/3c/3cd4/nostruct-align/3cd4.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3c/3cd4/nostruct-align/3cd4.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3c/3cd4/nostruct-align/3cd4.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-21526/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -12.871582
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 3pgk
id: 3pgk   alignment found: /projects/compbio/experiments/models.97/pdb/3p/3pgk/nostruct-align/3pgk.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/3p/3pgk/nostruct-align/3pgk.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/3p/3pgk/nostruct-align/3pgk.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26874/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -10.498535
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 4fgf
id: 4fgf   alignment found: /projects/compbio/experiments/models.97/pdb/4f/4fgf/nostruct-align/4fgf.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/4f/4fgf/nostruct-align/4fgf.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/4f/4fgf/nostruct-align/4fgf.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-26287/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.531616
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 5nn9
id: 5nn9   alignment found: /projects/compbio/experiments/models.97/pdb/5n/5nn9/nostruct-align/5nn9.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/5n/5nn9/nostruct-align/5nn9.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/5n/5nn9/nostruct-align/5nn9.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-29100/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -11.657593
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2cgpA
id: 2cgpA   alignment found: /projects/compbio/experiments/models.97/pdb/2c/2cgpA/nostruct-align/2cgpA.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/2c/2cgpA/nostruct-align/2cgpA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2c/2cgpA/nostruct-align/2cgpA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-24060/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -8.423584
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1ez0A
id: 1ez0A   alignment found: /projects/compbio/experiments/models.97/pdb/1e/1ez0A/nostruct-align/1ez0A.t99.a2m.gz
Reading parameter file /projects/compbio/experiments/models.97/pdb/1e/1ez0A/nostruct-align/1ez0A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1e/1ez0A/nostruct-align/1ez0A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-alpha-4933/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -13.822632
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 2bn2A
id: 2bn2A   alignment found: /projects/compbio/experiments/models.97/pdb/2b/2bn2A/nostruct-align/2bn2A.t99.a2m.gz
ScoreLibT99::make_wt_model: model file not found:/projects/compbio/experiments/models.97/pdb/2b/2bn2A/nostruct-align/2bn2A.t99-w0.5.mod, building from file /projects/compbio/experiments/models.97/pdb/2b/2bn2A/nostruct-align/2bn2A.t99.a2m.gz
Reading /projects/compbio/bin/scripts/sam-t99.conf

@@@@ chgrp protein /projects/compbio/tmp/tmp-build-weighted-model-beta-31191


@@@@ uniqueseq /projects/compbio/tmp/tmp-build-weighted-model-beta-31191/tmp -alignfile /projects/compbio/experiments/models.97/pdb/2b/2bn2A/nostruct-align/2bn2A.t99.a2m.gz \
    		-a protein -percent_id 0.8
SAM: uniqueseq v3.1b (February 24, 1999) compiled 04/18/00_11:44:50
Reading alignment file /projects/compbio/experiments/models.97/pdb/2b/2bn2A/nostruct-align/2bn2A.t99.a2m.gz (92 sequences, 85 columns) as A2M alignment.
Writing sequence output to /projects/compbio/tmp/tmp-build-weighted-model-beta-31191/tmp.a2m.
Dropping 1 (of 92) duplicate sequences with differing IDs
Dropping 67 (of 92) sequences with > 80.0% id
24 sequences left after dropping 68 of 92 sequences.


@@@@ modelfromalign /projects/compbio/tmp/tmp-build-weighted-model-beta-31191/tmp -alignfile /projects/compbio/tmp/tmp-build-weighted-model-beta-31191/tmp.a2m \
		-insert /projects/compbio/lib/fssp-trained.regularizer \
		-ins_jump_conf 1 \
		-match_jump_conf 1 \
		-del_jump_conf 1 \
		-prior_library /projects/compbio/lib/recode3.20comp \
		-binary_output 1  -a protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10
Reading parameter file /projects/compbio/lib/fssp-trained.regularizer
/projects/compbio/lib/fssp-trained.regularizer(1):  Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP
SAM: modelfromalign v3.1b (February 24, 1999) compiled 04/18/00_11:44:13
Reading alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-31191/tmp.a2m (24 sequences, 85 columns) as A2M alignment.


@@@@ cp -f /projects/compbio/tmp/tmp-build-weighted-model-beta-31191/tmp.mod /projects/compbio/experiments/models.97/pdb/2b/2bn2A/nostruct-align/2bn2A.t99-w0.5.mod


@@@@ rm -rf /projects/compbio/tmp/tmp-build-weighted-model-beta-31191 </dev/null
Reading /projects/compbio/bin/scripts/sam-t99.confReading parameter file /projects/compbio/experiments/models.97/pdb/2b/2bn2A/nostruct-align/2bn2A.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/2b/2bn2A/nostruct-align/2bn2A.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-31191/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.328613
Database has 1 sequences with 400 residues.
entering get_template_model_for_db_search: template_id: 1lcdA
id: 1lcdA   alignment found: /projects/compbio/experiments/models.97/pdb/1l/1lcdA/nostruct-align/1lcdA.t99.a2m.gz
ScoreLibT99::make_wt_model: model file not found:/projects/compbio/experiments/models.97/pdb/1l/1lcdA/nostruct-align/1lcdA.t99-w0.5.mod, building from file /projects/compbio/experiments/models.97/pdb/1l/1lcdA/nostruct-align/1lcdA.t99.a2m.gz
Reading /projects/compbio/bin/scripts/sam-t99.conf

@@@@ chgrp protein /projects/compbio/tmp/tmp-build-weighted-model-beta-15297


@@@@ uniqueseq /projects/compbio/tmp/tmp-build-weighted-model-beta-15297/tmp -alignfile /projects/compbio/experiments/models.97/pdb/1l/1lcdA/nostruct-align/1lcdA.t99.a2m.gz \
    		-a protein -percent_id 0.8
SAM: uniqueseq v3.1b (February 24, 1999) compiled 04/18/00_11:44:50
Reading alignment file /projects/compbio/experiments/models.97/pdb/1l/1lcdA/nostruct-align/1lcdA.t99.a2m.gz (183 sequences, 51 columns) as A2M alignment.
Writing sequence output to /projects/compbio/tmp/tmp-build-weighted-model-beta-15297/tmp.a2m.
Dropping 27 (of 183) duplicate sequences with differing IDs
Dropping 48 (of 183) sequences with > 80.0% id
108 sequences left after dropping 75 of 183 sequences.


@@@@ modelfromalign /projects/compbio/tmp/tmp-build-weighted-model-beta-15297/tmp -alignfile /projects/compbio/tmp/tmp-build-weighted-model-beta-15297/tmp.a2m \
		-insert /projects/compbio/lib/fssp-trained.regularizer \
		-ins_jump_conf 1 \
		-match_jump_conf 1 \
		-del_jump_conf 1 \
		-prior_library /projects/compbio/lib/recode3.20comp \
		-binary_output 1  -a protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10
Reading parameter file /projects/compbio/lib/fssp-trained.regularizer
/projects/compbio/lib/fssp-trained.regularizer(1):  Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP
SAM: modelfromalign v3.1b (February 24, 1999) compiled 04/18/00_11:44:13
Reading alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-15297/tmp.a2m (108 sequences, 51 columns) as A2M alignment.


@@@@ cp -f /projects/compbio/tmp/tmp-build-weighted-model-beta-15297/tmp.mod /projects/compbio/experiments/models.97/pdb/1l/1lcdA/nostruct-align/1lcdA.t99-w0.5.mod


@@@@ rm -rf /projects/compbio/tmp/tmp-build-weighted-model-beta-15297 </dev/null
Reading /projects/compbio/bin/scripts/sam-t99.confReading parameter file /projects/compbio/experiments/models.97/pdb/1l/1lcdA/nostruct-align/1lcdA.t99-w0.5.mod
/projects/compbio/experiments/models.97/pdb/1l/1lcdA/nostruct-align/1lcdA.t99-w0.5.mod(23):  Reading MODEL --  Model from alignment file /projects/compbio/tmp/tmp-build-weighted-model-beta-15297/tmp.a2m
SAM: /projects/compbio/bin/alpha/hmmscore v3.1b (February 24, 1999) compiled 05/16/00_17:09:35
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score:        -7.501709
Database has 1 sequences with 400 residues.
echo ReadNeuralNet /projects/compbio/usr/karplus/predict-2nd/testing/networks/overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net > tmp.script
echo ReadA2M T0101.t2k.a2m.gz >> tmp.script
echo PrintPrediction T0101.t2k.2d 3670-4530-6947 >> tmp.script
echo PrintPredictionFasta T0101.t2k.2d.seq >> tmp.script
echo PrintRDB T0101.t2k.2d.rdb >> tmp.script
predict-2nd < tmp.script
# command:# Neural network set to overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
# command:# Reading A2M format from T0101.t2k.a2m.gz
# Using SequenceWeight EntropyWeight(1.4, 10)
# Using regularizer /projects/compbio/lib/recode3.20comp for sequence weight regularizer.
# T0101.t2k.a2m with 13 sequences, total weight= 10.0589 avg weight= 0.773759 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.4 bits/position, saving 1.28683 bits.
Regularizing alignment for T0101.t2k.a2m.gz
# After reading T0101.t2k.a2m.gz, have 400 columns in 1 chains
# command:# Initializing Gain for FinalLayer
# Initializing Gain for ordering_layer
# Initializing Gain for SecondLayer
# Initializing Gain for FirstLayer
# Network initialization done
# Printing prediction to T0101.t2k.2d
# command:# Network initialization done
# Printing prediction  in FASTA format to T0101.t2k.2d.seq
# command:# Network initialization done
# Printing prediction to T0101.t2k.2d.rdb
# command:rm tmp.script
make: `T0101.t2k.2d' is up to date.