Citations (SAM, SAM-T99, HMMs)
10 20 30 40 50 60
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1 ADCSSDLTSGISTKRIYYVAPNGNSSNNGSSFNAPMSFSAAMAAVN..PGELILLKPGTYTIPYT
2 ADCSSDLTSGIITKRIYYVAPNGTSSNNGSSFNAPMSFSAAMAAVN..PGELILLKPGTYTIPYT
3 ADCSSDLTSGISTKRIYYVAPNGNSSNNGSSFNAPMSFSAAMAAVN..PGELILLKPGTYTIPYT
4 ADCSSDLTSGISTKRIYYVAPNGSSSNNGNSFNSPMSFTAAMAAAN..PGELILLKPGTYTIPYT
5 ---------------DLIVAPNGQEGNPGT-LNQPTTLTSAITRIQ..PGRTIYMRGGTYAFSET
6 ---------KLADAKNLYVSPEGKADNNGS-KNAPLDIKTAINALQ..AGGTLRLMDGDYS----
7 ---------------------------------DRASIQAAIDAAYaaGGGTVYLPAGEYRVSAA
8 ---------TLADARNLYVSPEGKAGNDGS-KNAPLDIKTAINALP..GGGTLWLMDGDYS----
9 ----------------------------------RVAIQAAIDAAHaaGGGTVYLPPGEYRVSAA
10 ---------------------------------DTDAIQAAIDAAHkaGGGTVYLPSGEYRVSGG
11 ----------------------------------RAAIQAAIDAAHaaGGGTVHLPAGEYRVSGG
12 ----------------------------------------------..-----------------
13 --------------DYLYVSPNGSDQNEGTKEKPFRTLAHASEKAA..AGTTVMIREGTYH----
70 80 90 100 110 120
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1 QGKGNTITFNKSGKDGAPIYVAAANCGRAVFD.....FSFPDSQWVQASYGFYVTGDYWYFKGVE
2 QGKGNTITFNKSGKEGAPIYVAAANCGRAVFD.....FSFPDSQWVQASYGFYVTGDYWYFKSVE
3 QGKGNTITFNKSGKDGAPIYVAAANCGRAVFD.....FSFPDSQWVQASYGFYVTGDYWYFKGVE
4 QGKGNTITFNKSGKEGSPIYVAAANCGRAVFD.....FSFPDSQWVQASYGFYVTGDYWYFKGIE
5 ----VLIERGNNGLEGARKRIVGYNGEKPVLD.....FSA--QAFDPMNRGLQINGHYWHVQGIE
6 ---ATVIPVSASG-NANGIKTLMPAGKKAIF-.....------------HGLQLNASYWKVKGVE
7 GEPGDGCLMLKDG-----VYLAGAGMGETVIK.....LIDGSDQ--------KITGMVRSAYGEE
8 ---ATVIPVSATQRKG--MKTLMPVGKKAVF-.....------------HGLQLNASYWKVKGIE
9 GEPSDGCLTLRDN-----VYLAGAGMGQTVIK.....LVDGSAQ--------KITGIVRSPFGEE
10 DEASDGALIIKSN-----VYIVGAGMGETVIK.....LVDGWDE--------KLTGIIRSANGEK
11 ERGVDGALMMKSN-----VYLAGAGMGETVVK.....LLDGWNG--------HVNGMIRSSGTEE
12 --------------NG--------------IE.....VYGDDSQLDKVFAGLRADGSDPSDSGF-
13 ----ETLDVKHSGTDGKPITFRNYENENVVISge7naEYETPLIRIHDKHDIAISGLTIQDLSVS
130 140 150 160 170 180
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1 VTRAGYQGAYVIGSHNTFENTAFHHNRNTGLEINN.....GGSYNTVINSDAYRNYDPKKNGSMA
2 VTQAGYQGAYVIGSHNTFENTAFHHNRNTGLEINN.....GGSYNTVINSDAYRNYDPKKNGSMA
3 VTRAGYQGAYVIGSHNTFENTAFHHNRNTGLEINN.....GGSYNTVINSDAYRNYDPKKNGSMA
4 VTRAGYQGAYVTGSHNTFENTAFHHNRNTGLEINN.....GGSYNTVINSDAYRNYDPKKNGSMA
5 VKEAGDNGIFIGGNYNRIENVETHHNKDTGLQISRys9deWPSYNEIINVYSHNNYDPD-DGEDA
6 ITEKSFR---IEGSYNQIERVLAHHCDNTGIQVSSnd8plWASHNLILNSESHSNQDPSK--KDA
7 TSNFGMRDLTLDGNRD-----------NTSGKVDG.....W-----------FNGYIPGGDGADR
8 ITEKSFR---IEGSHNQIERLLAHHCDNTGIQVSSsd8plWASHNLILNSESHSNQHPSK--KDA
9 TSNFGMRDLTLDGNRA-----------NTVDKVDG.....W-----------FNGYAPGQPGADR
10 THDYGISDLTIDGNQD-----------NTEGEVDG.....F-----------YTGYIPGKNGADY
11 THDFGVRDLTLDGNRD----------NNPEGTVFG.....F-----------YTGYKFG-DGADR
12 -PRISSHGIRILSNNTTVNSSIAAYNGGLGIRFEGs....GVNSGKAVNSIAYYNAL---SGSNL
13 SEEATAIGIYVSGSSSHIA-IKDNHIRGIKTTADE.....GNAHGIAVYG----------TGSMK
190 200 210 220 230 240
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1 DGFGPKQKQGPGNRFVGCRAWENSDDGFDLFDS.....PQKVVIENSWAFRNGINYWNDSAFAGN
2 DGFGPKQKQGPGNRFISCRAWENSDDGFDLFDS.....PQKVVIENSWAFRNGINYWNDSAFAGN
3 DGFGPKQKQGPGNRFVGCRAWENSDDGFDLFDS.....PQKVVIENSWAFRNGINYWNDSAFAGN
4 DGFGPKQKQGQGNRFGGCRAWENSDDGFDLFDS.....PQKVVIENSWAFRNGINYWSDSSFAGN
5 DGFAAKLTSGPGNVFDGCIAAYNVDDGWDLYTKsdtgaIYPVIIRNSIAYNNGSTEGGHSTSNSD
6 DGFAIKMRVGEGNVIRGAFSHDNVDDGFDLFNK.....-----IEDG---PNGVVVIGNSISVNN
7 DV-----------TIERVEVREMSGYGFDPHEQ.....TINLTIRDSVAHDNGLD----------
8 DGFAVKMRVGEGNVIRGAFSHDNVDDGFDLFNK.....-----IEDG---PNGAVMIENSISLNN
9 NV-----------TIERVEVREMSGYGFDPHEQ.....TINLVLRDSVAHHNGLD----------
10 NV-----------TVERVEIREVSRYAFDPHEQ.....TINLTIRDSVAHDNGKD----------
11 NV-----------IVERVEAREMSGYGFDPHAR.....TVNLVIRDSVAHDNGFV----------
12 DGFIA-VNGASNVIFENCVAANNSGSGIDNYNG.....-GRITIRNCSVVKNGWGNAEPS-----
13 DI----------------RIEDNTVEKLTLGAS.....-EAVVLNGN---IDGFTVAGNVVRNNN
250 260 270 280 290
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1 .GNGFKLGG.....NQAVGNHRITRSVAFGNVSKGFD.....QNNNAGGVTVINNTSYKNG....
2 .GNGFKLGG.....NQAVGNHRITRSVAFGNVSKGFD.....QNNNAGGVTVINNTSYKNG....
3 .GNGFKLGG.....NQAVGNHRITRSVAFGNVSKGFD.....QNNNAGGVTVINNTSYKNG....
4 .GNGFKLGG.....NQAVGNHRITRSVAFGNVSKGFD.....QNNNAGGVTVINNTSYKNG....
5 .GNGFKLGG.....SNIPVNHIVENNMAFGNKKHGFT.....YNSNPGSITMTNNTSWNNG....
6 tSNGFKLGG.....EGQPVAHQVKNSIAIGNHMDGFS.....DNFNPGALQVTNNIALDN-....
7 .--GFVA--.....-DYLVDSVFENNVAYANDRHGFN.....VVTSTHDFVMTNNVAYGNGs18s
8 tSNGFKLGG.....EGQPVAHQVKNSIAIGNHMDGFS.....DNFNPGALQVSNNIALDN-....
9 .--GFVA--.....-DYQIGGTFENNVAYANDRHGFN.....IVTSTNDFVMRNNVAYGNGg18e
10 .--GFVA--.....-DFQIGAVFENNVSYNNGRHGFN.....IVTSSHDIVFTNNVAYGNGa18y
11 .--GFVA--.....-DHQIDGAFENNVAYNNDLHGFN.....VVTSSHDFTLSDNVAYGNGa18y
12 .--GIRVSG.....S----GSEIVNNLVAENVGDGIL.....-------VTPTGSTSTPTG....
13 .NIGIDLIGye7dkNDYVRNGVVENNTVYQNSTYGNPa11giYVDGGHDIEIKNNTVYDND....
300 310 320 330 340 350
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1 .INYGFGS....NVQSGQKHYFRNNVSLSASVTVSNADAKSNSWDTGPAASASDFVSLD.TSLAT
2 .INYGFGS....NVQSGQKHYFRNNVFLSASVTVNNADAKSNSWDTGPAASASDFVSLD.TSLAT
3 .INYGFGS....NVQSGQKHYFRNNVSLSASVTVSNADAKSNSWDTGPAASASDFVSLD.TSLAT
4 .INYGFGS....NVKSGQKHYFRNNVSLSGSATVNNADAKSNSWDTGPVASASDFVSLD.TSLAT
5 .TRSGSNF....AFDRG-THLFANNLSFEASS--SDKYATSTDIDGSNLWWHNTKGSQNaKNLKV
6 .VRFNFIFrpspYYGPEKQGIFKNNVSLRTQPG-KYDDAVVGRVDASNYFIKNN-RALN.SQGKE
7 nILIDGGA....YYDNAREGVL---LKMTSDITLQNADIHGNGSSGVRVYGAQDVQILD.NQIHD
8 .VRFNFIFrpspYYGYEKQGIFKNNVSLRTQPG-KYDDAVVGRLDASNYFI--------.-----
9 nILIDGGS....YYDNGLEGVL---VKMSNNVTVQNADIHGNGSSGVRVYGAQGVQILG.NQIHD
10 nVEIEGGS....FHDNGQEGVL---IKMSTDVTLQGAEIYGNGYAGVRVQGVEDVRILD.NYIHD
11 nIRIDGGS....YHDNALEGVL---IKLSHDVTLQNAHIYDNGTAGVRIAGAQDVQLLD.NRIHD
12 .IKISRNS....IFKNGYVGIDLNVEDTSNNMG--------------------DNVTLN.DGQLD
13 .IGIEATS....EH----KGKYANAIQITDNKVYNNAYTG-------------------.-----
360 370 380 390 400
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1 VSRDNDGTLPETSLFRLSANSKLINAGTKESNISYSGSAPDLGAFERN
2 TSRDNDGTLPETSLFRLSASSKLINAGTKESNISYSGSAPDLGAFERN
3 VSRDNDGTLPETSLFRLSANSKLINAGTKESNISYSGSAPDLGAFERN
4 ISRDNDGTLPETALFRLSTNSKLINAGTKESNISYSGSAPDLGAFERN
5 TASDFISLIPTVS---RDANGAPVIGGF----LQLTGSSSLKGA----
6 ITTANYKSVTVPAVFNRDEKGNLQLGDF--------------------
7 NAQA--AAVPEVLLQSFDDTAGASGTYYTTLNTRIEGN----------
8 ------------------------------------------------
9 NAKT--AVAPEVLLQSYDDTLGVSGNYYTTLNTRVEGN----------
10 NAQS--KANAEVIVESYDDRDGPSDDYYETQNVTVKGN----------
11 NVQN--GTYPEVLLQAFDDSG-ITGNVYETLNTLIEGN----------
12 CSQPNCGIDYPVITAAQLIGSSLHIEGFINDENAGSGSSSFAGA----
13 ------------------------------------------------