PFRMAT SS TARGET T0101 AUTHOR 3670-4530-6947 METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 10 METHOD 7 10 METHOD 5 10 METHOD 11 3 (1 EHL2 ) METHOD The input amino acid frequencies were determined from METHOD alignment T0101.t2k.a2m.gz METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10) METHOD The weighting was determined by the posterior distribution METHOD after regularizing with /projects/compbio/lib/recode3.20comp. METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 10.0589 METHOD MODEL 1 A C 0.775 D C 0.784 C C 0.653 S C 0.655 S C 0.608 D C 0.594 L C 0.461 T C 0.461 S C 0.450 G C 0.485 I C 0.479 S C 0.570 T C 0.624 K C 0.687 R C 0.651 I E 0.596 Y E 0.838 Y E 0.932 V E 0.891 A E 0.641 P C 0.651 N C 0.869 G C 0.817 N C 0.786 S C 0.802 S C 0.855 N C 0.921 N C 0.914 G C 0.849 S C 0.729 S C 0.709 F C 0.714 N C 0.801 A C 0.865 P C 0.491 M H 0.598 S H 0.680 F H 0.972 S H 0.981 A H 0.985 A H 0.971 M H 0.961 A H 0.946 A H 0.860 V H 0.648 N C 0.758 P C 0.847 G C 0.886 E C 0.746 L E 0.762 I E 0.927 L E 0.928 L E 0.794 K C 0.599 P C 0.795 G C 0.705 T E 0.657 Y E 0.775 T E 0.704 I E 0.614 P C 0.618 Y C 0.785 T C 0.862 Q C 0.876 G C 0.903 K C 0.792 G C 0.720 N C 0.590 T E 0.736 I E 0.828 T E 0.820 F E 0.783 N E 0.542 K C 0.564 S C 0.797 G C 0.913 K C 0.737 D C 0.704 G C 0.778 A C 0.734 P C 0.523 I E 0.837 Y E 0.949 V E 0.965 A E 0.897 A E 0.681 A C 0.821 N C 0.922 C C 0.924 G C 0.889 R E 0.646 A E 0.908 V E 0.960 F E 0.963 D E 0.910 F E 0.760 S C 0.538 F C 0.789 P C 0.862 D C 0.708 S C 0.487 Q H 0.568 W H 0.539 V H 0.495 Q H 0.521 A H 0.553 S C 0.473 Y C 0.597 G C 0.689 F E 0.616 Y E 0.817 V E 0.867 T E 0.627 G C 0.527 D E 0.583 Y E 0.650 W E 0.582 Y E 0.491 F C 0.545 K C 0.698 G C 0.627 V E 0.573 E E 0.698 V E 0.663 T E 0.560 R C 0.487 A C 0.562 G C 0.552 Y C 0.683 Q C 0.726 G C 0.567 A E 0.766 Y E 0.887 V E 0.894 I E 0.758 G C 0.552 S C 0.843 H H 0.491 N H 0.708 T H 0.811 F H 0.852 E H 0.871 N H 0.904 T H 0.888 A H 0.866 F H 0.880 H H 0.749 H H 0.581 N C 0.496 R C 0.576 N C 0.825 T C 0.749 G C 0.540 L E 0.734 E E 0.859 I E 0.759 N C 0.522 N C 0.852 G C 0.873 G C 0.584 S C 0.587 Y C 0.529 N C 0.528 T E 0.565 V E 0.710 I E 0.771 N E 0.730 S C 0.445 D C 0.451 A C 0.437 Y C 0.454 R C 0.655 N C 0.858 Y C 0.777 D C 0.909 P C 0.918 K C 0.919 K C 0.889 N C 0.950 G C 0.929 S C 0.857 M C 0.822 A C 0.765 D C 0.730 G C 0.629 F C 0.543 G H 0.370 P E 0.410 K E 0.511 Q E 0.461 K C 0.465 Q C 0.650 G C 0.948 P C 0.951 G C 0.904 N C 0.556 R E 0.764 F E 0.869 V E 0.814 G E 0.827 C E 0.896 R E 0.924 A E 0.922 W E 0.878 E E 0.755 N E 0.505 S C 0.605 D C 0.735 D C 0.776 G C 0.833 F C 0.728 D C 0.833 L C 0.852 F C 0.898 D C 0.895 S C 0.895 P C 0.672 Q E 0.599 K E 0.782 V E 0.965 V E 0.982 I E 0.965 E E 0.804 N C 0.784 S C 0.815 W E 0.534 A E 0.605 F E 0.539 R C 0.576 N C 0.763 G C 0.773 I C 0.487 N E 0.525 Y C 0.480 W C 0.563 N C 0.686 D C 0.598 S E 0.621 A E 0.696 F E 0.692 A E 0.544 G C 0.702 N C 0.869 G C 0.872 N C 0.548 G E 0.580 F E 0.807 K E 0.825 L E 0.657 G C 0.636 G C 0.780 N C 0.792 Q C 0.749 A C 0.518 V E 0.515 G C 0.523 N C 0.631 H E 0.536 R E 0.828 I E 0.895 T E 0.891 R E 0.667 S E 0.564 V E 0.854 A E 0.898 F E 0.910 G E 0.772 N E 0.519 V C 0.721 S C 0.747 K C 0.625 G C 0.708 F C 0.562 D C 0.516 Q C 0.493 N E 0.568 N E 0.497 N C 0.750 A C 0.800 G C 0.783 G C 0.509 V E 0.783 T E 0.913 V E 0.902 I E 0.700 N C 0.582 N C 0.655 T E 0.727 S E 0.776 Y E 0.669 K C 0.614 N C 0.892 G C 0.919 I E 0.493 N E 0.753 Y E 0.769 G C 0.516 F C 0.733 G C 0.600 S E 0.784 N E 0.832 V E 0.738 Q C 0.661 S C 0.913 G C 0.917 Q C 0.626 K C 0.494 H E 0.626 Y E 0.667 F E 0.608 R E 0.464 N C 0.485 N E 0.608 V E 0.749 S E 0.813 L E 0.733 S C 0.510 A C 0.658 S C 0.677 V C 0.439 T E 0.539 V E 0.471 S C 0.602 N C 0.626 A C 0.505 D C 0.424 A E 0.448 K C 0.514 S C 0.683 N C 0.841 S C 0.843 W C 0.750 D C 0.719 T C 0.555 G E 0.486 P E 0.506 A E 0.632 A E 0.722 S E 0.744 A E 0.541 S C 0.632 D C 0.621 F C 0.417 V E 0.485 S E 0.512 L E 0.398 D C 0.583 T C 0.497 S H 0.501 L H 0.581 A H 0.570 T H 0.585 V H 0.570 S H 0.483 R C 0.567 D C 0.626 N C 0.593 D C 0.604 G C 0.799 T C 0.755 L C 0.868 P C 0.792 E C 0.515 T E 0.608 S E 0.748 L E 0.785 F E 0.767 R E 0.656 L E 0.509 S C 0.667 A C 0.811 N C 0.882 S C 0.839 K C 0.733 L E 0.468 I E 0.528 N C 0.487 A C 0.573 G C 0.468 T E 0.591 K E 0.662 E E 0.523 S C 0.503 N C 0.522 I E 0.523 S E 0.571 Y E 0.549 S C 0.566 G C 0.727 S C 0.718 A C 0.609 P C 0.577 D H 0.472 L C 0.515 G C 0.493 A C 0.440 F C 0.470 E C 0.537 R C 0.752 N C 0.951 END