PFRMAT SS
TARGET T0100
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0100.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 30.0563
METHOD
MODEL 1
A C 0.837
T C 0.662
T C 0.539
Y E 0.553
N E 0.770
A E 0.938
V E 0.971
V E 0.954
S E 0.812
K C 0.506
S C 0.765
S C 0.767
S C 0.802
D C 0.880
G C 0.822
K C 0.763
T C 0.687
F C 0.524
K C 0.580
T C 0.559
I H 0.983
A H 0.987
D H 0.985
A H 0.950
I H 0.930
A H 0.817
S H 0.624
A C 0.635
P C 0.818
A C 0.876
G C 0.950
S C 0.973
T C 0.957
P C 0.572
F E 0.909
V E 0.990
I E 0.998
L E 0.997
I E 0.969
K E 0.742
N C 0.740
G C 0.746
V E 0.801
Y E 0.834
N E 0.800
E E 0.853
R E 0.878
L E 0.943
T E 0.927
I E 0.758
T C 0.613
R C 0.902
N C 0.919
N C 0.616
L E 0.818
H E 0.948
L E 0.965
K E 0.903
G E 0.718
E C 0.643
S C 0.840
R C 0.864
N C 0.843
G C 0.620
A E 0.809
V E 0.955
I E 0.970
A E 0.942
A E 0.840
A E 0.624
T E 0.574
A E 0.526
A C 0.475
G C 0.562
T C 0.581
L C 0.600
K C 0.634
S C 0.637
D C 0.721
G C 0.789
S C 0.850
K C 0.856
W C 0.777
G C 0.780
T C 0.558
A C 0.499
G C 0.534
S E 0.686
S E 0.879
T E 0.951
I E 0.974
T E 0.968
I E 0.933
S E 0.803
A C 0.589
K C 0.826
D C 0.705
F E 0.635
S E 0.835
A E 0.919
Q E 0.878
S E 0.845
L E 0.886
T E 0.897
I E 0.911
R E 0.803
N E 0.623
D C 0.559
F C 0.754
D C 0.829
F C 0.856
P C 0.860
A C 0.898
N C 0.860
Q C 0.808
A C 0.763
K C 0.692
S C 0.689
D C 0.737
S C 0.805
D C 0.803
S C 0.780
S C 0.841
K C 0.816
I C 0.809
K C 0.791
D C 0.782
T C 0.805
Q C 0.543
A E 0.733
V E 0.772
A E 0.921
L E 0.962
Y E 0.941
V E 0.873
T E 0.657
K C 0.514
S C 0.874
G C 0.749
D C 0.732
R C 0.446
A E 0.626
Y E 0.815
F E 0.816
K E 0.698
D E 0.610
V E 0.576
S E 0.743
L E 0.762
V E 0.677
G C 0.509
Y C 0.503
Q C 0.656
D C 0.877
T E 0.735
L E 0.899
Y E 0.870
V E 0.768
S C 0.572
G C 0.760
G C 0.792
R E 0.472
S E 0.781
F E 0.878
F E 0.739
S E 0.491
D C 0.538
C E 0.559
R E 0.789
I E 0.875
S E 0.847
G E 0.675
T E 0.688
V E 0.613
D E 0.553
F E 0.919
I E 0.945
F E 0.928
G E 0.688
D C 0.556
G E 0.624
T E 0.804
A E 0.940
L E 0.955
F E 0.898
N E 0.676
N C 0.600
C E 0.614
D E 0.933
L E 0.978
V E 0.975
S E 0.875
R E 0.613
Y C 0.794
R C 0.964
A C 0.758
D C 0.563
V C 0.506
K C 0.586
S C 0.833
G C 0.826
N C 0.845
V C 0.718
S C 0.544
G E 0.647
Y E 0.905
L E 0.964
T E 0.946
A E 0.821
P C 0.589
S C 0.774
T C 0.797
N C 0.936
I C 0.825
N C 0.815
Q C 0.737
K C 0.841
Y C 0.606
G E 0.569
L E 0.882
V E 0.972
I E 0.957
T E 0.905
N E 0.735
S E 0.538
R E 0.798
V E 0.911
I E 0.826
R E 0.621
E C 0.774
S C 0.907
D C 0.876
S C 0.712
V C 0.616
P C 0.636
A C 0.652
K C 0.577
S E 0.586
Y E 0.812
G E 0.807
L E 0.668
G C 0.586
R C 0.711
P C 0.793
W C 0.664
H C 0.632
P C 0.679
T C 0.726
T C 0.731
T C 0.791
F C 0.742
S C 0.752
D C 0.742
G C 0.794
R C 0.720
Y C 0.715
A C 0.807
D C 0.785
P C 0.649
N C 0.543
A C 0.617
I C 0.854
G C 0.784
Q E 0.604
T E 0.847
V E 0.958
F E 0.954
L E 0.880
N E 0.626
T C 0.562
S C 0.612
M C 0.446
D H 0.565
N H 0.620
H H 0.533
I H 0.448
Y C 0.531
G C 0.740
W C 0.707
D C 0.697
K C 0.680
M C 0.675
S C 0.685
G C 0.743
K C 0.804
D C 0.772
K C 0.792
N C 0.808
G C 0.799
N C 0.620
T C 0.469
I C 0.438
W C 0.448
F C 0.586
N C 0.693
P C 0.755
E C 0.780
D C 0.635
S E 0.631
R E 0.850
F E 0.937
F E 0.930
E E 0.898
Y E 0.818
K C 0.605
S C 0.740
Y C 0.794
G C 0.934
A C 0.918
G C 0.909
A C 0.854
A C 0.823
V C 0.701
S C 0.734
K C 0.672
D C 0.514
R C 0.470
R C 0.570
Q C 0.665
L C 0.670
T C 0.562
D C 0.436
A C 0.389
Q C 0.383
A C 0.408
A C 0.488
E C 0.487
Y C 0.439
T C 0.407
Q E 0.350
S E 0.390
K E 0.474
V E 0.434
L E 0.423
G C 0.619
D C 0.677
W C 0.666
T C 0.778
P C 0.815
T C 0.849
L C 0.908
P C 0.979
END