PFRMAT SS
TARGET T0100
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0100.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 30.0563
METHOD
MODEL 1
A C 0.84
T C 0.66
T C 0.54
Y E 0.55
N E 0.77
A E 0.94
V E 0.97
V E 0.95
S E 0.81
K C 0.51
S C 0.77
S C 0.77
S C 0.80
D C 0.88
G C 0.82
K C 0.76
T C 0.69
F C 0.52
K C 0.58
T C 0.56
I H 0.98
A H 0.99
D H 0.99
A H 0.95
I H 0.93
A H 0.82
S H 0.62
A C 0.63
P C 0.82
A C 0.88
G C 0.95
S C 0.97
T C 0.96
P C 0.57
F E 0.91
V E 0.99
I E 1.00
L E 1.00
I E 0.97
K E 0.74
N C 0.74
G C 0.75
V E 0.80
Y E 0.83
N E 0.80
E E 0.85
R E 0.88
L E 0.94
T E 0.93
I E 0.76
T C 0.61
R C 0.90
N C 0.92
N C 0.62
L E 0.82
H E 0.95
L E 0.96
K E 0.90
G E 0.72
E C 0.64
S C 0.84
R C 0.86
N C 0.84
G C 0.62
A E 0.81
V E 0.95
I E 0.97
A E 0.94
A E 0.84
A E 0.62
T E 0.57
A E 0.53
A C 0.47
G C 0.56
T C 0.58
L C 0.60
K C 0.63
S C 0.64
D C 0.72
G C 0.79
S C 0.85
K C 0.86
W C 0.78
G C 0.78
T C 0.56
A C 0.50
G C 0.53
S E 0.69
S E 0.88
T E 0.95
I E 0.97
T E 0.97
I E 0.93
S E 0.80
A C 0.59
K C 0.83
D C 0.70
F E 0.64
S E 0.83
A E 0.92
Q E 0.88
S E 0.84
L E 0.89
T E 0.90
I E 0.91
R E 0.80
N E 0.62
D C 0.56
F C 0.75
D C 0.83
F C 0.86
P C 0.86
A C 0.90
N C 0.86
Q C 0.81
A C 0.76
K C 0.69
S C 0.69
D C 0.74
S C 0.81
D C 0.80
S C 0.78
S C 0.84
K C 0.82
I C 0.81
K C 0.79
D C 0.78
T C 0.81
Q C 0.54
A E 0.73
V E 0.77
A E 0.92
L E 0.96
Y E 0.94
V E 0.87
T E 0.66
K C 0.51
S C 0.87
G C 0.75
D C 0.73
R C 0.45
A E 0.63
Y E 0.82
F E 0.82
K E 0.70
D E 0.61
V E 0.58
S E 0.74
L E 0.76
V E 0.68
G C 0.51
Y C 0.50
Q C 0.66
D C 0.88
T E 0.73
L E 0.90
Y E 0.87
V E 0.77
S C 0.57
G C 0.76
G C 0.79
R E 0.47
S E 0.78
F E 0.88
F E 0.74
S E 0.49
D C 0.54
C E 0.56
R E 0.79
I E 0.87
S E 0.85
G E 0.68
T E 0.69
V E 0.61
D E 0.55
F E 0.92
I E 0.95
F E 0.93
G E 0.69
D C 0.56
G E 0.62
T E 0.80
A E 0.94
L E 0.95
F E 0.90
N E 0.68
N C 0.60
C E 0.61
D E 0.93
L E 0.98
V E 0.98
S E 0.88
R E 0.61
Y C 0.79
R C 0.96
A C 0.76
D C 0.56
V C 0.51
K C 0.59
S C 0.83
G C 0.83
N C 0.84
V C 0.72
S C 0.54
G E 0.65
Y E 0.91
L E 0.96
T E 0.95
A E 0.82
P C 0.59
S C 0.77
T C 0.80
N C 0.94
I C 0.83
N C 0.81
Q C 0.74
K C 0.84
Y C 0.61
G E 0.57
L E 0.88
V E 0.97
I E 0.96
T E 0.91
N E 0.74
S E 0.54
R E 0.80
V E 0.91
I E 0.83
R E 0.62
E C 0.77
S C 0.91
D C 0.88
S C 0.71
V C 0.62
P C 0.64
A C 0.65
K C 0.58
S E 0.59
Y E 0.81
G E 0.81
L E 0.67
G C 0.59
R C 0.71
P C 0.79
W C 0.66
H C 0.63
P C 0.68
T C 0.73
T C 0.73
T C 0.79
F C 0.74
S C 0.75
D C 0.74
G C 0.79
R C 0.72
Y C 0.71
A C 0.81
D C 0.78
P C 0.65
N C 0.54
A C 0.62
I C 0.85
G C 0.78
Q E 0.60
T E 0.85
V E 0.96
F E 0.95
L E 0.88
N E 0.63
T C 0.56
S C 0.61
M C 0.45
D H 0.57
N H 0.62
H H 0.53
I H 0.45
Y C 0.53
G C 0.74
W C 0.71
D C 0.70
K C 0.68
M C 0.68
S C 0.69
G C 0.74
K C 0.80
D C 0.77
K C 0.79
N C 0.81
G C 0.80
N C 0.62
T C 0.47
I C 0.44
W C 0.45
F C 0.59
N C 0.69
P C 0.75
E C 0.78
D C 0.64
S E 0.63
R E 0.85
F E 0.94
F E 0.93
E E 0.90
Y E 0.82
K C 0.60
S C 0.74
Y C 0.79
G C 0.93
A C 0.92
G C 0.91
A C 0.85
A C 0.82
V C 0.70
S C 0.73
K C 0.67
D C 0.51
R C 0.47
R C 0.57
Q C 0.66
L C 0.67
T C 0.56
D C 0.44
A C 0.39
Q C 0.38
A C 0.41
A C 0.49
E C 0.49
Y C 0.44
T C 0.41
Q E 0.35
S E 0.39
K E 0.47
V E 0.43
L E 0.42
G C 0.62
D C 0.68
W C 0.67
T C 0.78
P C 0.82
T C 0.85
L C 0.91
P C 0.98
END