PFRMAT SS
TARGET T0100
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0100.remote-t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 42.0242
METHOD
MODEL 1
A C 0.851
T C 0.667
T C 0.512
Y E 0.605
N E 0.789
A E 0.943
V E 0.970
V E 0.947
S E 0.797
K C 0.567
S C 0.799
S C 0.780
S C 0.842
D C 0.896
G C 0.811
K C 0.767
T C 0.717
F C 0.520
K C 0.611
T C 0.551
I H 0.984
A H 0.986
D H 0.983
A H 0.934
I H 0.905
A H 0.790
S H 0.610
A C 0.688
P C 0.789
A C 0.866
G C 0.934
S C 0.957
T C 0.939
P C 0.625
F E 0.854
V E 0.981
I E 0.997
L E 0.996
I E 0.963
K E 0.695
N C 0.746
G C 0.713
V E 0.820
Y E 0.849
N E 0.811
E E 0.857
R E 0.887
L E 0.944
T E 0.916
I E 0.717
T C 0.699
R C 0.917
N C 0.909
N C 0.596
L E 0.836
H E 0.949
L E 0.952
K E 0.860
G E 0.656
E C 0.713
S C 0.873
R C 0.827
N C 0.732
G E 0.528
A E 0.870
V E 0.949
I E 0.948
A E 0.891
A E 0.705
A E 0.494
T E 0.477
A E 0.507
A E 0.469
G C 0.420
T C 0.429
L C 0.456
K C 0.513
S C 0.583
D C 0.694
G C 0.775
S C 0.837
K C 0.863
W C 0.779
G C 0.737
T C 0.538
A E 0.498
G E 0.508
S E 0.681
S E 0.872
T E 0.955
I E 0.974
T E 0.970
I E 0.932
S E 0.803
A C 0.540
K C 0.839
D C 0.707
F E 0.682
S E 0.860
A E 0.932
Q E 0.877
S E 0.845
L E 0.891
T E 0.908
I E 0.920
R E 0.801
N E 0.592
D C 0.683
F C 0.804
D C 0.836
F C 0.855
P C 0.860
A C 0.913
N C 0.860
Q C 0.809
A C 0.769
K C 0.714
S C 0.707
D C 0.726
S C 0.769
D C 0.784
S C 0.779
S C 0.850
K C 0.826
I C 0.807
K C 0.793
D C 0.774
T C 0.804
Q C 0.504
A E 0.799
V E 0.881
A E 0.967
L E 0.981
Y E 0.956
V E 0.861
T E 0.646
K C 0.648
S C 0.900
G C 0.784
D C 0.761
R C 0.427
A E 0.785
Y E 0.915
F E 0.905
K E 0.788
D E 0.684
V E 0.589
S E 0.716
L E 0.729
V E 0.654
G C 0.541
Y C 0.538
Q C 0.683
D C 0.892
T E 0.761
L E 0.918
Y E 0.890
V E 0.793
S C 0.555
G C 0.754
G C 0.774
R E 0.491
S E 0.813
F E 0.900
F E 0.769
S E 0.512
D C 0.566
C E 0.550
R E 0.791
I E 0.879
S E 0.856
G E 0.690
T E 0.705
V E 0.636
D E 0.573
F E 0.921
I E 0.945
F E 0.928
G E 0.692
D C 0.547
G E 0.641
T E 0.815
A E 0.943
L E 0.957
F E 0.901
N E 0.685
N C 0.607
C E 0.608
D E 0.938
L E 0.981
V E 0.980
S E 0.892
R E 0.636
Y C 0.797
R C 0.949
A C 0.733
D C 0.553
V C 0.523
K C 0.597
S C 0.836
G C 0.829
N C 0.847
V C 0.719
S C 0.539
G E 0.645
Y E 0.908
L E 0.966
T E 0.947
A E 0.817
P C 0.604
S C 0.784
T C 0.795
N C 0.934
I C 0.818
N C 0.813
Q C 0.741
K C 0.856
Y C 0.613
G E 0.576
L E 0.887
V E 0.974
I E 0.959
T E 0.911
N E 0.740
S E 0.539
R E 0.804
V E 0.918
I E 0.842
R E 0.649
E C 0.763
S C 0.914
D C 0.889
S C 0.729
V C 0.630
P C 0.632
A C 0.624
K C 0.537
S E 0.627
Y E 0.827
G E 0.816
L E 0.678
G C 0.577
R C 0.699
P C 0.786
W C 0.659
H C 0.606
P C 0.640
T C 0.686
T C 0.670
T C 0.716
F C 0.688
S C 0.691
D C 0.714
G C 0.764
R C 0.678
Y C 0.691
A C 0.809
D C 0.796
P C 0.637
N C 0.524
A C 0.621
I C 0.854
G C 0.773
Q E 0.649
T E 0.870
V E 0.962
F E 0.955
L E 0.872
N E 0.609
T C 0.587
S C 0.634
M C 0.452
D H 0.560
N H 0.617
H H 0.523
I H 0.437
Y C 0.534
G C 0.714
W C 0.689
D C 0.686
K C 0.672
M C 0.687
S C 0.717
G C 0.764
K C 0.780
D C 0.709
K C 0.732
N C 0.790
G C 0.796
N C 0.662
T C 0.498
I C 0.457
W C 0.464
F C 0.598
N C 0.707
P C 0.775
E C 0.780
D C 0.585
S E 0.672
R E 0.867
F E 0.939
F E 0.930
E E 0.891
Y E 0.795
K C 0.645
S C 0.752
Y C 0.794
G C 0.935
A C 0.919
G C 0.910
A C 0.865
A C 0.843
V C 0.728
S C 0.745
K C 0.614
D C 0.478
R C 0.489
R C 0.603
Q C 0.678
L C 0.694
T C 0.589
D C 0.485
A C 0.436
Q C 0.428
A C 0.415
A C 0.447
E H 0.443
Y H 0.415
T C 0.379
Q E 0.380
S E 0.398
K E 0.484
V E 0.436
L E 0.394
G C 0.578
D C 0.662
W C 0.599
T C 0.679
P C 0.755
T C 0.821
L C 0.900
P C 0.980
END