PFRMAT SS
TARGET T0085
AUTHOR 1751-3146-3362
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded6-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    9	    6
METHOD	   11	    9
METHOD	    3	    8
METHOD	    7	    3 (1 EHL )
METHOD The input amino acid frequencies were determined from
METHOD alignment t85.t98_6.a2m.gz
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 5.06214
METHOD
MODEL 1
A C 0.90
D C 0.83
A C 0.85
P C 0.85
F C 0.68
E C 0.68
G C 0.75
R C 0.71
K C 0.58
K C 0.71
C C 0.74
S C 0.60
S C 0.51
C C 0.69
H C 0.70
K C 0.63
A H 0.57
Q H 0.52
A H 0.50
Q C 0.53
S C 0.57
W H 0.66
K H 0.64
D H 0.61
T H 0.59
A H 0.48
H H 0.53
A H 0.70
K H 0.64
A H 0.66
M H 0.77
E H 0.74
S H 0.60
L H 0.62
K H 0.63
P H 0.64
N C 0.62
V H 0.55
K H 0.73
K H 0.80
E H 0.78
A H 0.73
K H 0.56
Q H 0.51
K H 0.42
A C 0.51
K C 0.48
L C 0.60
D C 0.87
P C 0.79
A C 0.74
K C 0.84
D C 0.86
Y C 0.71
T C 0.66
Q C 0.68
D C 0.56
K C 0.49
D C 0.53
C C 0.50
V H 0.39
G H 0.47
C H 0.45
H C 0.45
V C 0.48
D C 0.59
G C 0.65
F C 0.78
G C 0.87
Q C 0.83
K C 0.83
G C 0.92
G C 0.88
Y C 0.66
T C 0.57
I C 0.48
E C 0.46
S C 0.68
P C 0.77
K C 0.76
P C 0.71
M E 0.49
L E 0.58
T E 0.50
G C 0.62
V C 0.74
G C 0.83
C C 0.70
E C 0.48
S C 0.51
C C 0.63
H C 0.80
G C 0.93
P C 0.87
G C 0.69
R C 0.57
N C 0.51
F C 0.57
R C 0.75
G C 0.85
D C 0.87
H C 0.77
R C 0.76
K C 0.80
S C 0.87
G C 0.81
Q C 0.53
A C 0.44
F H 0.37
E C 0.36
K C 0.46
S C 0.69
G C 0.81
K C 0.83
K C 0.81
T C 0.94
P C 0.91
R H 0.56
K H 0.80
D H 0.81
L H 0.88
A H 0.88
K H 0.79
K C 0.58
G C 0.84
Q C 0.73
D C 0.62
F C 0.61
H C 0.48
F H 0.61
E H 0.75
E H 0.82
R H 0.76
C H 0.63
S H 0.72
A H 0.61
C H 0.51
H C 0.48
L C 0.55
N C 0.60
Y C 0.61
E C 0.64
G C 0.76
S C 0.90
P C 0.74
W C 0.56
K C 0.44
G E 0.66
A E 0.73
K E 0.70
A E 0.53
P C 0.59
Y C 0.70
T C 0.89
P C 0.87
F C 0.84
T C 0.85
P C 0.52
E H 0.62
V H 0.51
D C 0.43
A C 0.37
K E 0.54
Y E 0.60
T E 0.57
F E 0.55
K E 0.49
F C 0.41
D H 0.52
E H 0.67
M H 0.65
V H 0.67
K H 0.63
E H 0.51
V H 0.53
K H 0.49
A H 0.45
M H 0.48
H H 0.44
E C 0.49
H C 0.53
Y C 0.67
K C 0.69
L C 0.43
E E 0.42
G E 0.56
V E 0.56
F E 0.45
E C 0.58
G C 0.82
E C 0.94
P C 0.90
K C 0.69
F C 0.68
K C 0.76
F C 0.79
H C 0.81
D C 0.53
E C 0.53
F C 0.51
Q C 0.50
A C 0.60
S C 0.65
A C 0.65
K C 0.77
P C 0.59
A C 0.49
K C 0.54
K C 0.67
G C 0.89
K C 0.90
END