28 August 1998 Christian

==> t85-2nd-fssp-vit.rdb <==
HMM     TARGET  BUILDSCRIPT     VITERBI SW_SCORE        SCORE
8S      8S      15S     1N      1N      10N
2trcP   t85-2nd varh50  1       2       -5.550
1dmr    t85-2nd varh50  1       2       -5.310
1avc    t85-2nd varh50  1       2       -4.900
1lefA   t85-2nd varh50  1       2       -4.320
1rec    t85-2nd varh50  1       2       -4.220
1avqA   t85-2nd varh50  1       2       -4.180
1tf4A   t85-2nd varh50  1       2       -3.960
1djxB   t85-2nd varh50  1       2       -3.690
1dik    t85-2nd varh50  1       2       -3.530
1occM   t85-2nd varh50  1       2       -3.510
1pysA   t85-2nd varh50  1       2       -3.360
1zwb    t85-2nd varh50  1       2       -3.280


1avc is a phospholipid-binding protein, which is exactly the type of 
protein I was hoping for.

Other structures in the 1avc FSSP family that show up in the rdb files:
						Z		%IDE
1ain  	t85-2nd-sum98.rdb  	-3.410		41.7		46
1axn  	t85-2nd-sum98.rdb   	 0.280		40.4		52
1hvd  	t85-2nd-sum98.rdb   	 0.280		40.1		57
1occE 	t85-2nd-sum98.rd	-0.570		4.5		10
3bct	t85-2nd-sum98.rdb	-0.080		4.3		3
1abv    t85-2nd-sum98.rdb	0.390		4.0		4

Here are the non-self scores for 1avc
1avc/1avc-t85-2nd-fssp-global.pw.dist:t85-2nd       72        65.06  1000000.00
1avc/1avc-t85-2nd-global.pw.dist:t85-2nd            72        40.51  1000000.00
1avc/1avc-t85-2nd-vit.pw.dist:t85-2nd      	    72        -1.65       -0.36
1avc/t85-2nd-1avc-global.pw.dist:1avc              642        -7.59       -4.37
1avc/t85-2nd-1avc-vit.pw.dist:1avc                 642        -4.85       -3.47

t85-2nd-1avc.cbarrett1.a2m This alignment is to a nice looking separable
piece of 1avc that has 17 identities out of 65 aligned positions (71 if you
count the one 6-residue deletion).