PFRMAT SS
TARGET T0084
AUTHOR 1751-3146-3362
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded6-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    9	    6
METHOD	   11	    9
METHOD	    3	    8
METHOD	    7	    3 (1 EHL )
METHOD The input amino acid frequencies were determined from
METHOD alignment t84.t98_6.a2m.gz
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 3.80571
METHOD
MODEL 1
C C 0.82
G C 0.87
G C 0.87
R H 0.49
E H 0.67
G H 0.64
V H 0.74
L H 0.78
K H 0.62
K C 0.51
L H 0.49
R C 0.39
A E 0.38
V C 0.37
E C 0.46
N H 0.46
E H 0.53
L H 0.50
H C 0.54
Y C 0.63
N C 0.65
K C 0.56
S C 0.58
L H 0.45
L H 0.72
E H 0.87
E H 0.89
V H 0.91
K H 0.94
D H 0.95
E H 0.94
L H 0.94
Q H 0.93
K H 0.84
M H 0.62
R C 0.48
Q C 0.63
END