PFRMAT SS
TARGET T0083
AUTHOR 1751-3146-3362
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded6-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    9	    6
METHOD	   11	    9
METHOD	    3	    8
METHOD	    7	    3 (1 EHL )
METHOD The input amino acid frequencies were determined from
METHOD alignment t83.t98_6.a2m.gz
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 4.50348
METHOD
MODEL 1
M C 0.63
I C 0.56
Q H 0.48
S H 0.63
Q H 0.58
I H 0.60
N H 0.66
R H 0.78
N H 0.71
I H 0.73
R H 0.77
L H 0.82
D H 0.73
L H 0.80
A H 0.93
D H 0.97
A H 0.97
I H 0.97
L H 0.95
L H 0.92
S H 0.88
K H 0.71
A H 0.54
K C 0.63
K C 0.85
D C 0.82
L C 0.63
S C 0.52
F H 0.89
A H 0.97
E H 0.98
I H 0.98
A H 0.97
D H 0.94
G H 0.84
T C 0.57
G C 0.69
L H 0.47
A H 0.63
E H 0.82
A H 0.91
F H 0.93
V H 0.96
T H 0.97
A H 0.95
A H 0.93
L H 0.83
L H 0.51
G C 0.54
Q C 0.60
Q C 0.48
A C 0.58
L C 0.74
P C 0.61
A H 0.77
D H 0.92
A H 0.96
A H 0.98
R H 0.99
L H 0.98
V H 0.98
G H 0.96
A H 0.91
K H 0.75
L C 0.49
D C 0.67
L C 0.67
D C 0.66
E H 0.77
D H 0.82
S H 0.80
I H 0.80
L H 0.77
L H 0.70
L H 0.51
Q C 0.63
M C 0.71
I C 0.87
P C 0.86
L C 0.60
R C 0.60
G C 0.73
C C 0.74
I C 0.75
D C 0.90
D C 0.85
R C 0.76
I C 0.85
P C 0.87
T C 0.87
D C 0.86
P C 0.68
T H 0.47
M H 0.61
Y H 0.75
R H 0.80
F H 0.90
Y H 0.94
E H 0.97
M H 0.98
L H 0.98
Q H 0.96
V H 0.91
Y H 0.81
G H 0.87
T H 0.91
T H 0.87
L H 0.96
K H 0.97
A H 0.97
L H 0.94
V H 0.92
H H 0.90
E H 0.85
K H 0.62
F C 0.69
G C 0.85
D C 0.84
G C 0.64
I E 0.61
I E 0.75
S E 0.84
A E 0.87
I E 0.80
N E 0.70
F E 0.60
K E 0.56
L E 0.54
D E 0.51
V E 0.45
K C 0.38
K C 0.40
V C 0.52
A C 0.72
D C 0.90
P C 0.88
E C 0.88
G C 0.94
G C 0.94
E C 0.72
R E 0.73
A E 0.92
V E 0.96
I E 0.95
T E 0.92
L E 0.75
D C 0.55
G E 0.51
K E 0.70
Y E 0.84
L E 0.83
P E 0.70
T E 0.49
K C 0.74
P C 0.77
F C 0.79
END