PFRMAT SS
TARGET T0080
AUTHOR 1751-3146-3362
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded6-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    9	    6
METHOD	   11	    9
METHOD	    3	    8
METHOD	    7	    3 (1 EHL )
METHOD The input amino acid frequencies were determined from
METHOD alignment t80.t98_6.a2m.gz
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 3.60751
METHOD
MODEL 1
K C 0.91
G C 0.90
H C 0.72
L C 0.56
T C 0.49
R E 0.42
L C 0.53
G C 0.69
L C 0.46
E H 0.40
F C 0.47
F C 0.53
D C 0.45
Q H 0.51
P H 0.57
A H 0.90
V H 0.96
P H 0.99
L H 0.99
A H 0.99
R H 0.99
A H 0.99
F H 0.97
L H 0.93
G H 0.85
Q H 0.84
V H 0.76
L H 0.68
V H 0.61
R H 0.53
R C 0.43
L C 0.69
P C 0.86
N C 0.88
G C 0.91
T C 0.72
E E 0.71
L E 0.91
R E 0.95
G E 0.96
R E 0.95
I E 0.96
V E 0.94
E E 0.95
T E 0.94
E E 0.94
A E 0.93
Y E 0.86
L E 0.57
G C 0.86
P C 0.91
E C 0.78
D C 0.49
E H 0.61
A H 0.55
A H 0.47
H C 0.48
S C 0.65
R C 0.71
G C 0.85
G C 0.90
R C 0.76
Q C 0.74
T C 0.89
P C 0.84
R C 0.75
N C 0.67
R C 0.50
G E 0.55
M E 0.63
F E 0.54
M C 0.64
K C 0.84
P C 0.90
G C 0.83
T C 0.50
L E 0.78
Y E 0.90
V E 0.90
Y E 0.88
I E 0.83
I E 0.63
Y C 0.50
G C 0.75
M C 0.55
Y E 0.72
F E 0.86
C E 0.93
M E 0.89
N E 0.83
I E 0.78
S E 0.63
S C 0.58
Q C 0.86
G C 0.91
D C 0.94
G C 0.89
A E 0.51
C E 0.88
V E 0.95
L E 0.96
L E 0.91
R E 0.78
A E 0.48
L C 0.66
E C 0.86
P C 0.66
L C 0.52
E C 0.70
G C 0.62
L H 0.73
E H 0.86
T H 0.81
M H 0.90
R H 0.94
Q H 0.92
L H 0.82
R H 0.77
S H 0.70
T H 0.67
L H 0.60
R H 0.48
K C 0.58
G C 0.81
T C 0.80
A C 0.72
S C 0.66
R C 0.58
V C 0.54
L C 0.58
K C 0.65
D C 0.44
R H 0.55
E H 0.60
L H 0.53
C C 0.50
S C 0.84
G C 0.95
P C 0.77
S H 0.71
K H 0.75
L H 0.86
C H 0.91
Q H 0.91
A H 0.82
L H 0.60
A C 0.57
I C 0.57
N C 0.70
K C 0.71
S C 0.66
F C 0.74
D C 0.87
Q C 0.64
R C 0.51
D C 0.46
L H 0.43
A C 0.51
Q C 0.64
D C 0.87
E C 0.86
A C 0.60
V E 0.66
W E 0.76
L E 0.72
E E 0.54
R C 0.71
G C 0.92
P C 0.86
L C 0.72
E C 0.78
P C 0.86
S C 0.91
E C 0.87
P C 0.80
A C 0.53
V E 0.68
V E 0.77
A E 0.65
A C 0.64
A C 0.66
R C 0.50
V C 0.53
G C 0.59
V C 0.62
G C 0.68
H C 0.71
A C 0.65
G H 0.62
E H 0.77
W H 0.61
A C 0.59
R C 0.76
K C 0.89
P C 0.86
L E 0.69
R E 0.94
F E 0.97
Y E 0.96
V E 0.87
R E 0.52
G C 0.79
S C 0.94
P C 0.89
W C 0.49
V E 0.61
S E 0.62
V E 0.54
V H 0.37
D H 0.59
R H 0.72
V H 0.74
A H 0.79
E H 0.77
Q H 0.66
D C 0.54
T C 0.68
Q C 0.70
A C 0.77
END