PFRMAT SS
TARGET t79-1st_1:60
AUTHOR 1751-3146-3362
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded6-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    9	    6
METHOD	   11	    9
METHOD	    3	    8
METHOD	    7	    3 (1 EHL )
METHOD The input amino acid frequencies were determined from
METHOD alignment t79-1st.remote_4.a2m.gz
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 90.46
METHOD
MODEL 1
M C 0.80
T C 0.69
M C 0.70
S C 0.80
R C 0.79
R C 0.76
N C 0.83
T C 0.83
D C 0.51
A H 0.56
I H 0.72
T H 0.62
I H 0.91
H H 0.98
S H 0.99
I H 0.99
L H 0.99
D H 0.99
W H 0.98
I H 0.98
E H 0.96
D H 0.84
N C 0.57
L C 0.56
E C 0.82
S C 0.91
P C 0.82
L C 0.61
S C 0.55
L H 0.92
E H 0.98
K H 0.98
V H 0.99
S H 0.98
E H 0.96
R H 0.91
S H 0.64
G C 0.50
Y C 0.62
S C 0.62
K H 0.90
W H 0.97
H H 0.95
L H 0.98
Q H 0.99
R H 0.99
M H 0.98
F H 0.98
K H 0.97
K H 0.96
E H 0.84
T C 0.69
G C 0.79
H C 0.68
S C 0.79
L C 0.52
G H 0.44
Q H 0.38
Y E 0.44
I E 0.46
END