PFRMAT SS
TARGET T0078
AUTHOR 1751-3146-3362
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded6-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    9	    6
METHOD	   11	    9
METHOD	    3	    8
METHOD	    7	    3 (1 EHL )
METHOD The input amino acid frequencies were determined from
METHOD alignment t78.t98_6.a2m.gz
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 4.34714
METHOD
MODEL 1
S C 0.93
S C 0.85
M C 0.59
G H 0.73
Q H 0.83
A H 0.78
L H 0.82
K H 0.76
N H 0.64
L H 0.65
L C 0.46
T C 0.53
L C 0.48
L C 0.58
N C 0.62
L C 0.48
E H 0.48
K C 0.50
I C 0.51
E C 0.49
E C 0.56
G C 0.65
L C 0.44
F C 0.44
R C 0.49
G C 0.54
Q C 0.52
S C 0.49
E H 0.45
D C 0.44
L C 0.62
G C 0.78
L C 0.68
R C 0.58
Q C 0.46
V C 0.48
F C 0.56
G C 0.58
G C 0.43
Q H 0.67
V H 0.69
V H 0.87
G H 0.96
Q H 0.98
A H 0.98
L H 0.98
Y H 0.98
A H 0.97
A H 0.96
K H 0.91
E H 0.75
T H 0.57
V H 0.50
P C 0.51
E C 0.43
E C 0.52
R C 0.60
L C 0.50
V C 0.47
H C 0.58
S C 0.60
F C 0.48
H E 0.47
S E 0.59
Y E 0.72
F E 0.76
L E 0.74
R E 0.67
P E 0.48
G C 0.79
D C 0.89
S C 0.80
K C 0.77
K C 0.80
P C 0.79
I E 0.43
I E 0.62
Y E 0.65
D E 0.61
V E 0.48
E E 0.38
T H 0.42
L C 0.38
R C 0.58
D C 0.74
G C 0.89
N C 0.87
S C 0.65
F E 0.51
S E 0.72
A E 0.74
R E 0.71
R E 0.63
V H 0.59
A H 0.72
A H 0.80
I H 0.77
Q C 0.48
N C 0.85
G C 0.93
K C 0.77
P E 0.81
I E 0.97
F E 0.99
Y E 0.99
M E 0.99
T E 0.99
A E 0.97
S E 0.94
F E 0.86
Q E 0.63
A C 0.59
P C 0.65
E C 0.69
A C 0.89
G C 0.81
F C 0.61
E C 0.47
H C 0.45
Q C 0.58
K C 0.57
T C 0.60
M C 0.81
P C 0.88
S C 0.72
A C 0.78
P C 0.94
A C 0.95
P C 0.59
D H 0.65
G H 0.53
L C 0.53
P C 0.63
S C 0.49
E H 0.69
T H 0.86
Q H 0.90
I H 0.91
A H 0.92
Q H 0.90
S H 0.84
L H 0.79
A H 0.60
H C 0.54
L C 0.83
L C 0.91
P C 0.82
P H 0.53
V H 0.56
L H 0.57
K H 0.60
D H 0.65
K H 0.54
F C 0.53
I C 0.61
C C 0.61
D C 0.71
R C 0.66
P C 0.52
L E 0.54
E E 0.70
V E 0.69
R E 0.59
P E 0.56
V C 0.53
E C 0.65
F C 0.68
H C 0.79
N C 0.65
P C 0.60
L C 0.58
K C 0.52
G C 0.62
H C 0.81
V C 0.77
A C 0.80
E C 0.88
P C 0.85
H C 0.72
R C 0.55
Q E 0.53
V E 0.70
W E 0.75
I E 0.66
R E 0.61
A C 0.41
N C 0.64
G C 0.81
S C 0.77
V C 0.79
P C 0.90
D C 0.84
D C 0.76
L H 0.60
R H 0.68
V H 0.65
H H 0.66
Q H 0.58
Y E 0.49
L E 0.53
L E 0.56
G E 0.60
Y E 0.45
A C 0.62
S C 0.72
D H 0.54
L H 0.61
N H 0.61
F H 0.56
L H 0.62
P H 0.63
V H 0.55
A H 0.49
L C 0.54
Q C 0.81
P C 0.69
H C 0.64
G C 0.62
I C 0.60
G C 0.70
F C 0.76
L C 0.67
E C 0.67
P C 0.73
G C 0.62
I C 0.54
Q E 0.49
I E 0.67
A E 0.64
T E 0.50
I C 0.55
D C 0.60
H C 0.50
S C 0.48
M H 0.45
W C 0.38
F C 0.41
H C 0.62
R C 0.76
P C 0.79
F C 0.72
N C 0.64
L C 0.63
N C 0.61
E H 0.57
W H 0.53
L H 0.47
L H 0.47
Y H 0.42
S E 0.37
V C 0.48
E C 0.56
S C 0.62
T C 0.52
S C 0.47
A C 0.54
S C 0.72
S C 0.84
A C 0.80
R C 0.58
G E 0.49
F E 0.61
V E 0.55
R E 0.46
G C 0.53
E C 0.50
F E 0.44
Y C 0.41
T C 0.55
Q C 0.74
D C 0.87
G C 0.70
V E 0.72
L E 0.90
V E 0.93
A E 0.87
S E 0.67
T C 0.51
V C 0.53
Q H 0.51
E H 0.45
G E 0.40
V E 0.59
M E 0.64
R E 0.62
N C 0.54
H C 0.85
N C 0.90
END