PFRMAT SS
TARGET T0078n
AUTHOR 1751-3146-3362
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded6-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    9	    6
METHOD	   11	    9
METHOD	    3	    8
METHOD	    7	    3 (1 EHL )
METHOD The input amino acid frequencies were determined from
METHOD alignment t78.remote_4.a2m.gz
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 8.99859
METHOD
MODEL 1
S C 0.91
S C 0.79
M C 0.63
G C 0.50
Q H 0.62
A H 0.83
L H 0.89
K H 0.88
N H 0.77
L H 0.80
L H 0.62
T H 0.52
L H 0.41
L C 0.50
N C 0.58
L C 0.45
E H 0.59
K H 0.64
I H 0.59
E H 0.50
E C 0.67
G C 0.82
L C 0.58
F E 0.46
R E 0.62
G E 0.59
Q E 0.48
S C 0.51
E C 0.58
D C 0.65
L C 0.72
G C 0.67
L C 0.58
R C 0.57
Q C 0.51
V C 0.49
F C 0.54
G C 0.51
G H 0.51
Q H 0.84
V H 0.85
V H 0.93
G H 0.98
Q H 0.98
A H 0.97
L H 0.96
Y H 0.92
A H 0.81
A H 0.66
K C 0.45
E C 0.47
T E 0.48
V E 0.49
P C 0.48
E C 0.51
E C 0.70
R C 0.76
L C 0.61
V C 0.59
H C 0.70
S C 0.61
F C 0.49
H E 0.50
S E 0.63
Y E 0.70
F E 0.66
L E 0.53
R C 0.65
P C 0.81
G C 0.87
D C 0.88
S C 0.84
K C 0.84
K C 0.61
P E 0.68
I E 0.88
I E 0.91
Y E 0.85
D E 0.69
V C 0.49
E C 0.61
T H 0.43
L C 0.48
R C 0.64
D C 0.79
G C 0.88
N C 0.84
S C 0.62
F E 0.47
S E 0.66
A E 0.65
R E 0.62
R E 0.51
V H 0.72
A H 0.81
A H 0.86
I H 0.80
Q C 0.48
N C 0.87
G C 0.94
K C 0.79
P E 0.81
I E 0.97
F E 0.98
Y E 0.99
M E 0.96
T E 0.90
A E 0.89
S E 0.91
F E 0.85
Q E 0.72
A C 0.50
P C 0.75
E C 0.80
A C 0.87
G C 0.82
F C 0.58
E E 0.68
H E 0.77
Q E 0.76
K E 0.78
T E 0.78
M E 0.54
P C 0.77
S C 0.63
A C 0.66
P C 0.88
A C 0.89
P C 0.53
D H 0.66
G H 0.57
L H 0.57
P C 0.51
S C 0.59
E H 0.62
T H 0.87
Q H 0.92
I H 0.91
A H 0.95
Q H 0.96
S H 0.90
L H 0.93
A H 0.92
H H 0.88
L H 0.74
L H 0.63
P H 0.50
P H 0.51
V H 0.50
L H 0.55
K H 0.55
D H 0.51
K C 0.51
F C 0.58
I C 0.64
C C 0.74
D C 0.82
R C 0.69
P C 0.49
L E 0.56
E E 0.66
V E 0.60
R C 0.52
P C 0.52
V C 0.60
E C 0.64
F C 0.62
H C 0.72
N C 0.55
P E 0.51
L E 0.63
K E 0.64
G E 0.53
H C 0.54
V C 0.68
A C 0.78
E C 0.80
P C 0.81
H C 0.79
R C 0.60
Q E 0.44
V E 0.63
W E 0.67
I E 0.55
R E 0.52
A C 0.45
N C 0.67
G C 0.82
S C 0.78
V C 0.80
P C 0.90
D C 0.82
D C 0.72
L H 0.68
R H 0.78
V H 0.77
H H 0.81
Q H 0.81
Y H 0.67
L H 0.69
L H 0.63
G H 0.46
Y H 0.39
A C 0.58
S C 0.69
D H 0.65
L H 0.75
N H 0.77
F H 0.74
L H 0.78
P H 0.80
V H 0.73
A H 0.63
L C 0.49
Q C 0.81
P C 0.67
H C 0.64
G C 0.64
I C 0.61
G C 0.71
F C 0.79
L C 0.70
E C 0.70
P C 0.76
G C 0.62
I C 0.53
Q E 0.50
I E 0.68
A E 0.63
T E 0.48
I C 0.57
D C 0.60
H C 0.49
S C 0.47
M H 0.49
W H 0.40
F C 0.44
H C 0.66
R C 0.76
P C 0.76
F C 0.71
N C 0.64
L C 0.61
N C 0.53
E H 0.76
W H 0.78
L H 0.77
L H 0.75
Y H 0.69
S H 0.49
V C 0.39
E C 0.43
S C 0.56
T C 0.63
S C 0.65
A C 0.73
S C 0.77
S C 0.85
A C 0.73
R E 0.61
G E 0.80
F E 0.88
V E 0.83
R E 0.72
G E 0.55
E E 0.48
F E 0.57
Y E 0.51
T C 0.52
Q C 0.73
D C 0.86
G C 0.67
V E 0.75
L E 0.91
V E 0.94
A E 0.88
S E 0.68
T C 0.51
V C 0.54
Q H 0.49
E H 0.42
G E 0.43
V E 0.62
M E 0.67
R E 0.64
N C 0.53
H C 0.86
N C 0.90
END