;  SAM: prettyalign v2.2  (July 31, 1998) compiled 08/03/98_13:50:14.
;  SAM:  Sequence Alignment and Modeling Software System
;  (c) 1992-1998 Regents of the University of California, Santa Cruz
;  http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ------ Citations (HMMs, SAM) ------
; A. Krogh et al., Hidden Markov models in computational biology:
;   Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;   Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; -----------------------
              10         20        30        40        50        60   
               |          |         |         |         |         |   
T0078 SSMGQALKNLLTLLNLE.KIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKETVPEERLVHSFH
1nbaA -TFNDIEARLAAVLEEAfEAGTSIYNERGFKRRIGYGNRPAVIHIDLANAWTQPGHPFSCPGM-


           70        80        90       100       110         120     
            |         |         |         |         |           |     
T0078 SYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPE..AGFEHQKTMPS
1nbaA ----------ETIIPNVQRINE---------AARAKGVPVFYTTNVYRNRDasSGTNDMGLWYS


        130       140       150       160       170       180       19
          |         |         |         |         |         |         
T0078 APAPDGLPSETQIAQSLAHLLPPVLKDKFICDRPLEVRPVEFHNPLKGHVAEPHRQVWIRANGS
1nbaA KIPTETLPADSYWAQIDDRIAPADGEVVIEKNRASAFPGTNLELFLTSN---------------


      0       200       210       220       230       240       250   
      |         |         |         |         |         |         |   
T0078 VPDDLRVHQYLLGYASDLNFLPVALQPHGIGFLEPGIQIATIDHSMWFHRPFNLNEWLLYSVES
1nbaA -----RIDTLIVTGATAAGCVRHTVEDAIAKGFRPIIP------------------------RE


          260       270       280                                  290
            |         |         |                                    |
T0078 TSASSARGFVRGEFYTQDGVLVASTVQEGVMRNHN-............................
1nbaA TIGDRVPGVVQWNLYDIDNKFGDVESTDSVVQYLD-alpqfedtvpktlsdpqpeveapadpv.