PFRMAT SS
TARGET T0076
AUTHOR 1751-3146-3362
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded6-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    9	    6
METHOD	   11	    9
METHOD	    3	    8
METHOD	    7	    3 (1 EHL )
METHOD The input amino acid frequencies were determined from
METHOD alignment t76.t98_2.a2m.gz
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 10.4837
METHOD
METHOD First 6 residues taken from T0076 without alignment, since
METHOD t76.t98_2 unaligned those residues.
MODEL 1
S C 0.77
T C 0.86
D C 0.87
D C 0.86
S C 0.90
P C 0.75
Y H 0.99
K H 0.99
Q H 0.98
A H 0.95
F H 0.85
S H 0.66
L H 0.54
F C 0.47
D C 0.61
R C 0.68
H C 0.87
G C 0.90
T C 0.93
G C 0.84
R C 0.54
I C 0.47
P C 0.51
K H 0.79
T H 0.95
S H 0.95
I H 0.98
G H 0.99
D H 0.99
L H 0.99
L H 0.98
R H 0.96
A H 0.91
C H 0.69
G C 0.73
Q C 0.81
N C 0.82
P C 0.88
T C 0.75
L H 0.85
A H 0.96
E H 0.93
I H 0.96
- H 0.97
- H 0.97
- H 0.94
- H 0.77
- C 0.66
- C 0.85
- C 0.93
- C 0.95
- C 0.88
- C 0.62
V C 0.47
D C 0.51
M H 0.59
E H 0.87
Q H 0.94
F H 0.94
L H 0.95
Q H 0.94
V H 0.91
L H 0.91
N H 0.90
R H 0.87
- H 0.89
- H 0.84
- H 0.75
- H 0.53
- C 0.81
- C 0.84
- C 0.80
- C 0.92
- C 0.79
- H 0.90
E H 0.97
E H 0.98
F H 0.99
V H 0.99
K H 0.99
G H 0.97
F H 0.93
Q H 0.77
V H 0.58
F C 0.49
D C 0.75
K C 0.66
D C 0.76
A C 0.89
T C 0.92
G C 0.80
M C 0.49
I C 0.43
G C 0.43
V H 0.87
G H 0.97
E H 0.98
L H 0.99
R H 0.99
Y H 1.00
V H 0.99
L H 0.99
T H 0.96
S H 0.83
L H 0.58
G H 0.50
E H 0.61
K C 0.58
L C 0.88
S C 0.85
N H 0.87
E H 0.97
E H 0.97
M H 0.99
D H 0.99
E H 0.99
L H 0.98
L H 0.96
K H 0.90
G H 0.80
V H 0.48
P C 0.81
V C 0.91
K C 0.93
D C 0.94
G C 0.89
M C 0.61
V C 0.48
N C 0.56
Y H 0.83
H H 0.96
D H 0.99
F H 0.99
V H 0.98
Q H 0.97
M H 0.95
I H 0.85
L H 0.55
A C 0.70
- C 0.88
END