;  SAM: prettyalign v2.2  (July 31, 1998) compiled 08/03/98_13:50:14.
;  SAM:  Sequence Alignment and Modeling Software System
;  (c) 1992-1998 Regents of the University of California, Santa Cruz
;  http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ------ Citations (HMMs, SAM) ------
; A. Krogh et al., Hidden Markov models in computational biology:
;   Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;   Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; -----------------------
                                       10        20        30        4
                                        |         |         |         
t71   emasqdffqrwkqlsnpqqevqnifKAKHPMDT-----EITKAKIIGFGSALL--------EEV
1aojA .........................K-KYAKSKYDFVARNSSELSVMKDDVLEILDDRRQWWKV


      0        50        60                                       
      |         |         |                                       
t71   DPNPANFVGAGIIHTKTTQIGCLLRLE-pnlqaqmyrltlrtskdtvsqrlcellseqf.
1aojA RNASGD---SGFVPNNILDI---MRTPE................................