;  SAM: prettyalign v2.2  (July 31, 1998) compiled 08/03/98_13:50:14.
;  SAM:  Sequence Alignment and Modeling Software System
;  (c) 1992-1998 Regents of the University of California, Santa Cruz
;  http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ------ Citations (HMMs, SAM) ------
; A. Krogh et al., Hidden Markov models in computational biology:
;   Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;   Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; -----------------------
                                         10        20        30       
                                          |         |         |       
t71-1st ednfarfvcknngvlfenqllqiglKSEFRQNLGRMFIFYGNKTSTQFLNFTPTLICADDLQ
1aojA   .........................K-KYAKSK---YDFVARNSSELSVMKDDVLEILDDRR


         40        50        60        70                             
          |         |         |         |                             
t71-1st TNLNLQTKPVDPTVDGGAQVQQVINIECISDFTEapvlniqfryggtfqnvsvklpitlnkf
1aojA   QWWKVRNASGD----SGFVPNNILDI---MRTPE............................


         
         
t71-1st .
1aojA   .