PFRMAT SS
TARGET T0069
AUTHOR 1751-3146-3362
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded3-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    9	    6
METHOD	   11	    9
METHOD	    3	    8
METHOD	    7	    3 (1 EHL )
METHOD The input amino acid frequencies were determined from
METHOD alignment t69.close.retrain.a2m.gz
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 3.21017
METHOD
MODEL 1
A C 0.92
E C 0.82
A C 0.71
N C 0.60
A C 0.52
L H 0.51
K H 0.58
Q H 0.56
R H 0.52
V H 0.66
T H 0.70
I H 0.61
L H 0.74
D H 0.83
G H 0.86
H H 0.86
L H 0.94
R H 0.95
R H 0.91
F H 0.94
Q H 0.97
N H 0.98
A H 0.96
F H 0.96
S H 0.94
Q H 0.91
Y H 0.83
K H 0.63
K H 0.46
A C 0.37
V E 0.48
L E 0.57
F E 0.47
P C 0.64
D C 0.67
G C 0.52
Q H 0.48
A H 0.44
V C 0.64
G C 0.79
E C 0.60
K E 0.61
I E 0.75
F E 0.77
K E 0.68
T E 0.49
A C 0.69
G C 0.81
A C 0.63
V C 0.63
K C 0.74
S C 0.64
Y H 0.48
S H 0.69
D H 0.77
A H 0.91
E H 0.94
Q H 0.93
L H 0.82
C H 0.68
R H 0.69
E H 0.58
A C 0.59
K C 0.72
G C 0.74
Q C 0.65
L E 0.54
A E 0.48
S C 0.79
P C 0.86
R C 0.79
S H 0.52
S H 0.82
A H 0.86
E H 0.92
N H 0.97
E H 0.98
A H 0.98
V H 0.99
T H 0.99
Q H 0.99
M H 0.98
V H 0.97
R H 0.91
A H 0.82
Q H 0.61
E C 0.53
K C 0.56
N E 0.42
A E 0.68
Y E 0.79
L E 0.71
S E 0.55
M C 0.61
N C 0.82
D C 0.76
I C 0.64
S C 0.70
T C 0.68
E C 0.71
G C 0.70
R E 0.59
F E 0.79
T E 0.79
Y E 0.71
P E 0.52
T C 0.66
G C 0.82
E C 0.71
I E 0.70
L E 0.87
V E 0.91
Y E 0.82
S E 0.51
N C 0.60
W C 0.60
A C 0.67
D C 0.81
G C 0.88
E C 0.91
P C 0.94
N C 0.96
N C 0.91
S C 0.83
D C 0.80
E C 0.79
G C 0.89
Q C 0.96
P C 0.81
E C 0.64
N C 0.76
C C 0.61
V E 0.64
E E 0.84
I E 0.85
F E 0.66
P C 0.69
D C 0.90
G C 0.92
K C 0.69
W C 0.67
N C 0.85
D C 0.68
V C 0.58
P C 0.69
C C 0.74
S C 0.78
K C 0.79
Q C 0.69
L E 0.69
L E 0.92
V E 0.96
I E 0.96
C E 0.92
E E 0.81
F C 0.53
END