PFRMAT SS
TARGET t66-chim20_1:126
AUTHOR 1751-3146-3362
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded3-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    9	    6
METHOD	   11	    9
METHOD	    3	    8
METHOD	    7	    3 (1 EHL )
METHOD The input amino acid frequencies were determined from
METHOD alignment t66-chim20.t98_6.a2m.gz
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 4.95901
METHOD
MODEL 1
D C 0.87
E C 0.74
K C 0.82
H C 0.78
E C 0.68
T C 0.51
E E 0.56
Y E 0.53
D C 0.61
G C 0.78
Q C 0.74
L C 0.78
D C 0.73
S H 0.87
E H 0.95
W H 0.97
E H 0.99
K H 0.99
L H 0.99
V H 0.99
R H 0.99
D H 0.99
A H 0.97
M H 0.96
T H 0.88
S H 0.65
G C 0.65
V C 0.70
S C 0.51
K H 0.70
K H 0.84
Q H 0.83
F H 0.90
R H 0.90
E H 0.85
F H 0.79
L H 0.77
D H 0.72
Y H 0.87
Q H 0.93
K H 0.92
W H 0.91
R H 0.86
K H 0.75
S H 0.57
Q H 0.64
K H 0.78
E H 0.88
E H 0.88
X H 0.84
X H 0.83
X H 0.82
X H 0.75
X H 0.75
X H 0.74
X H 0.68
X H 0.62
X H 0.58
X H 0.51
X H 0.48
X H 0.46
X H 0.46
X H 0.50
X H 0.57
X H 0.56
X H 0.68
X H 0.75
X H 0.69
X H 0.61
M H 0.64
K H 0.58
N H 0.50
A C 0.56
K C 0.61
Q C 0.66
E C 0.51
H H 0.59
F H 0.66
E H 0.68
L H 0.81
D H 0.92
Q H 0.97
E H 0.98
W H 0.98
V H 0.98
E H 0.98
L H 0.96
M H 0.94
V H 0.89
E H 0.81
A H 0.61
K C 0.54
E C 0.69
A C 0.90
N C 0.89
I C 0.82
S C 0.85
P H 0.79
E H 0.97
E H 0.98
I H 0.99
R H 0.99
K H 0.99
Y H 0.99
L H 0.96
L H 0.86
L H 0.60
N C 0.80
K C 0.76
K C 0.75
S C 0.78
A C 0.89
H C 0.93
P C 0.92
G C 0.93
P C 0.83
A C 0.66
A C 0.61
R C 0.54
S C 0.58
H C 0.62
T C 0.47
V C 0.58
N C 0.83
P C 0.81
F C 0.75
END