PFRMAT SS
TARGET t0062
AUTHOR 1751-3146-3362
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded4-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    9	    6
METHOD	   11	    9
METHOD	    3	    8
METHOD	    7	    3 (1 EHL )
METHOD The input amino acid frequencies were determined from
METHOD alignment t62.t98_6.a2m.gz
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 23.785
METHOD
METHOD	Due to misalignment in t62.t98_6.a2m, the last predictions
METHOD  for the last three residues were taken from t62.t98_3.
METHOD
MODEL 1
T C 0.84
T C 0.61
L E 0.49
S E 0.63
C E 0.84
K E 0.94
V E 0.94
T E 0.90
S E 0.87
V E 0.78
E E 0.61
A E 0.48
I C 0.56
T C 0.74
D C 0.83
T C 0.70
V E 0.70
Y E 0.91
R E 0.98
V E 0.98
R E 0.98
I E 0.94
V E 0.82
P C 0.55
D C 0.90
A C 0.88
A C 0.88
F C 0.87
S C 0.70
F C 0.51
R C 0.48
A C 0.54
G C 0.69
Q E 0.61
Y E 0.90
L E 0.95
M E 0.96
V E 0.93
V E 0.78
M C 0.60
D C 0.86
E C 0.93
R C 0.92
D C 0.57
K E 0.73
R E 0.86
P E 0.91
F E 0.85
S E 0.71
M E 0.69
A E 0.54
S C 0.62
T C 0.74
P C 0.83
D C 0.84
E C 0.81
K C 0.90
G C 0.86
F E 0.52
I E 0.87
E E 0.97
L E 0.99
H E 0.99
I E 0.98
G E 0.94
A E 0.81
S C 0.54
E C 0.80
I C 0.87
N C 0.79
L C 0.48
Y H 0.45
A H 0.88
K H 0.96
A H 0.95
V H 0.92
M H 0.89
D H 0.78
R H 0.61
I C 0.65
L C 0.82
K C 0.77
D C 0.90
H C 0.70
Q E 0.84
I E 0.93
V E 0.94
V E 0.86
D E 0.52
I C 0.82
P C 0.83
H C 0.76
G C 0.77
E C 0.50
A E 0.68
W E 0.73
L E 0.59
R C 0.60
D C 0.77
D C 0.91
E C 0.79
E C 0.78
R C 0.89
P C 0.76
M E 0.73
I E 0.93
L E 0.96
I E 0.95
A E 0.84
G E 0.52
G C 0.75
T C 0.87
G C 0.71
F C 0.51
S C 0.43
Y H 0.55
A H 0.93
R H 0.98
S H 0.99
I H 0.98
L H 0.98
L H 0.98
T H 0.98
A H 0.97
L H 0.92
A H 0.79
R C 0.50
N C 0.87
P C 0.88
N C 0.92
R C 0.89
D E 0.52
I E 0.91
T E 0.98
I E 0.99
Y E 0.98
W E 0.91
G E 0.50
G C 0.74
R C 0.86
E C 0.83
E H 0.54
Q H 0.75
H H 0.83
L H 0.86
Y H 0.72
D H 0.83
L H 0.97
C H 0.99
E H 0.97
L H 0.99
E H 0.99
A H 0.99
L H 0.99
S H 0.98
L H 0.94
K H 0.85
H C 0.64
P C 0.92
G C 0.89
L C 0.59
Q E 0.82
V E 0.96
V E 0.98
P E 0.98
V E 0.97
V E 0.89
E E 0.65
Q C 0.70
P C 0.90
E C 0.87
A C 0.84
G C 0.91
W C 0.85
R C 0.72
G C 0.72
R C 0.70
T C 0.57
G C 0.56
T C 0.47
V C 0.40
L H 0.81
T H 0.93
A H 0.92
V H 0.87
L H 0.90
Q H 0.90
D H 0.86
H H 0.66
G C 0.72
T C 0.89
L C 0.88
A C 0.87
E C 0.80
H C 0.72
D E 0.46
I E 0.67
Y E 0.76
I E 0.64
A C 0.67
G C 0.94
R C 0.79
F H 0.85
E H 0.95
M H 0.95
A H 0.98
K H 0.99
I H 0.99
A H 0.99
R H 0.99
D H 0.98
L H 0.96
F H 0.95
C H 0.94
S H 0.90
E H 0.76
R C 0.68
N C 0.83
A C 0.78
R C 0.82
E C 0.51
D H 0.74
R H 0.78
L H 0.66
F H 0.65
G H 0.75
D H 0.70
A H 0.62
F H 0.42
A C 0.56
F C 0.73
I C 0.84
END