PFRMAT SS
TARGET t0062_1:232
AUTHOR 1751-3146-3362
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded4-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    9	    6
METHOD	   11	    9
METHOD	    3	    8
METHOD	    7	    3 (1 EHL )
METHOD The input amino acid frequencies were determined from
METHOD alignment t62.t98_3.a2m.gz
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 19.1238
METHOD
MODEL 1
T C 0.85
T C 0.64
L C 0.51
S E 0.64
C E 0.86
K E 0.94
V E 0.93
T E 0.87
S E 0.82
V E 0.70
E E 0.50
A C 0.49
I C 0.59
T C 0.73
D C 0.81
T C 0.69
V E 0.66
Y E 0.89
R E 0.97
V E 0.98
R E 0.97
I E 0.93
V E 0.79
P C 0.58
D C 0.90
A C 0.88
A C 0.89
F C 0.88
S C 0.72
F C 0.54
R C 0.50
A C 0.54
G C 0.68
Q E 0.62
Y E 0.90
L E 0.95
M E 0.95
V E 0.91
V E 0.76
M C 0.65
D C 0.88
E C 0.91
R C 0.87
D C 0.53
K E 0.71
R E 0.81
P E 0.86
F E 0.76
S E 0.57
M E 0.59
A E 0.47
S C 0.65
T C 0.74
P C 0.83
D C 0.85
E C 0.79
K C 0.87
G C 0.86
F C 0.51
I E 0.87
E E 0.97
L E 0.99
H E 0.99
I E 0.98
G E 0.94
A E 0.78
S C 0.61
E C 0.84
I C 0.90
N C 0.81
L C 0.48
Y H 0.47
A H 0.88
K H 0.96
A H 0.95
V H 0.92
M H 0.87
D H 0.73
R H 0.57
I C 0.66
L C 0.80
K C 0.76
D C 0.89
H C 0.66
Q E 0.85
I E 0.93
V E 0.94
V E 0.88
D E 0.59
I C 0.79
P C 0.82
H C 0.75
G C 0.77
E C 0.50
A E 0.68
W E 0.73
L E 0.64
R C 0.51
D C 0.73
D C 0.89
E C 0.76
E C 0.76
R C 0.90
P C 0.79
M E 0.65
I E 0.90
L E 0.94
I E 0.93
A E 0.81
G C 0.49
G C 0.78
T C 0.89
G C 0.75
F C 0.54
S C 0.45
Y H 0.58
A H 0.93
R H 0.98
S H 0.99
I H 0.98
L H 0.98
L H 0.98
T H 0.98
A H 0.97
L H 0.91
A H 0.78
R C 0.51
N C 0.88
P C 0.89
N C 0.93
R C 0.87
D E 0.59
I E 0.93
T E 0.98
I E 0.99
Y E 0.98
W E 0.90
G E 0.51
G C 0.74
R C 0.85
E C 0.80
E H 0.55
Q H 0.73
H H 0.82
L H 0.84
Y H 0.67
D H 0.80
L H 0.97
C H 0.99
E H 0.97
L H 0.98
E H 0.99
A H 0.99
L H 0.99
S H 0.97
L H 0.94
K H 0.87
H C 0.59
P C 0.93
G C 0.90
L C 0.60
Q E 0.83
V E 0.96
V E 0.98
P E 0.98
V E 0.97
V E 0.90
E E 0.63
Q C 0.75
P C 0.90
E C 0.88
A C 0.84
G C 0.88
W C 0.81
R C 0.72
G C 0.75
R C 0.73
T C 0.62
G C 0.61
T C 0.48
V H 0.50
L H 0.86
T H 0.94
A H 0.91
V H 0.89
L H 0.92
Q H 0.91
D H 0.84
H H 0.59
G C 0.80
T C 0.88
L C 0.88
A C 0.85
E C 0.76
H C 0.68
D C 0.42
I E 0.51
Y E 0.62
I E 0.52
A C 0.69
G C 0.94
R C 0.77
F H 0.86
E H 0.95
M H 0.95
A H 0.98
K H 0.99
I H 1.00
A H 0.99
R H 0.99
D H 0.99
L H 0.97
F H 0.97
C H 0.95
S H 0.91
E H 0.77
R C 0.69
N C 0.84
A C 0.77
R C 0.79
E C 0.46
D H 0.75
R H 0.77
L H 0.68
F H 0.67
G H 0.78
D H 0.75
A H 0.66
F H 0.48
A C 0.56
F C 0.73
I C 0.84
END