PFRMAT SS
TARGET T0058
AUTHOR 1751-3146-3362
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded3-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    9	    6
METHOD	   11	    9
METHOD	    3	    8
METHOD	    7	    3 (1 EHL )
METHOD The input amino acid frequencies were determined from
METHOD alignment t58.t98_2.a2m.gz
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 4.9979
METHOD
MODEL 1
M C 0.85
A C 0.71
N C 0.69
E C 0.64
L H 0.57
T H 0.59
W H 0.87
H H 0.92
D H 0.92
V H 0.84
L H 0.70
A H 0.59
E H 0.66
E H 0.60
K H 0.56
Q H 0.51
Q H 0.59
P H 0.69
Y H 0.71
F H 0.80
L H 0.89
N H 0.91
T H 0.91
L H 0.94
Q H 0.94
T H 0.92
V H 0.92
A H 0.93
S H 0.89
E H 0.82
R H 0.67
Q C 0.53
S C 0.57
G C 0.52
V C 0.43
T E 0.58
I E 0.56
Y C 0.65
P C 0.89
P C 0.89
Q C 0.57
K H 0.57
D H 0.55
V H 0.57
F H 0.52
N H 0.40
A H 0.39
F H 0.36
R C 0.36
F C 0.47
T C 0.67
E C 0.77
L C 0.82
G C 0.86
D C 0.67
V E 0.77
K E 0.97
V E 0.99
V E 1.00
I E 0.99
L E 0.97
G E 0.75
Q C 0.76
D C 0.93
P C 0.89
Y C 0.82
H C 0.86
G C 0.89
P C 0.89
G C 0.81
Q C 0.64
A C 0.53
H C 0.48
G C 0.49
L E 0.73
A E 0.85
F E 0.77
S E 0.58
V E 0.52
R C 0.62
P C 0.75
G C 0.86
I C 0.83
A C 0.91
I C 0.93
P C 0.82
P H 0.55
S C 0.54
L H 0.90
L H 0.97
N H 0.99
M H 0.99
Y H 0.99
K H 0.98
E H 0.98
L H 0.95
E H 0.83
N H 0.50
T C 0.76
I C 0.88
P C 0.92
G C 0.81
F C 0.78
T C 0.76
R C 0.77
P C 0.91
N C 0.90
H C 0.76
G C 0.72
Y C 0.66
L H 0.78
E H 0.94
S H 0.98
W H 0.98
A H 0.98
R H 0.98
Q H 0.96
G H 0.87
V H 0.65
L E 0.56
L E 0.82
L E 0.72
N C 0.55
T C 0.50
V E 0.69
L E 0.83
T E 0.89
V E 0.86
R E 0.75
A E 0.48
G C 0.80
Q C 0.83
A C 0.76
H C 0.75
S C 0.69
H C 0.56
A C 0.58
S C 0.52
L C 0.55
G C 0.54
W H 0.75
E H 0.84
T H 0.88
F H 0.81
T H 0.91
D H 0.96
K H 0.98
V H 0.98
I H 0.99
S H 0.99
L H 0.97
I H 0.97
N H 0.95
Q H 0.91
H H 0.69
R C 0.55
E C 0.84
G C 0.69
V C 0.38
V E 0.50
F E 0.48
L E 0.49
L E 0.44
W C 0.38
G H 0.48
S H 0.65
H H 0.76
A H 0.77
Q H 0.70
K H 0.59
K H 0.46
G C 0.42
A C 0.41
I C 0.42
I C 0.58
D C 0.82
K C 0.84
Q C 0.86
R C 0.68
H E 0.63
H E 0.89
V E 0.95
L E 0.94
K E 0.88
A E 0.58
P C 0.82
H C 0.89
P C 0.95
S C 0.96
P C 0.81
L C 0.62
S C 0.67
A C 0.65
H C 0.61
R C 0.59
G C 0.65
F C 0.59
F C 0.66
G C 0.78
C C 0.83
N C 0.68
H H 0.56
F H 0.78
V H 0.90
L H 0.90
A H 0.94
N H 0.96
Q H 0.96
W H 0.95
L H 0.93
E H 0.85
Q H 0.65
R C 0.82
G C 0.88
E C 0.83
T C 0.76
P C 0.58
I E 0.47
D E 0.53
W E 0.58
M E 0.58
P E 0.50
V C 0.49
L C 0.64
P C 0.75
A C 0.76
E C 0.78
S C 0.80
E C 0.84
END