PFRMAT SS
TARGET T0057
AUTHOR 1751-3146-3362
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded6-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    9	    6
METHOD	   11	    9
METHOD	    3	    8
METHOD	    7	    3 (1 EHL )
METHOD The input amino acid frequencies were determined from
METHOD alignment t57.t98_5.a2m.gz
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 4.1488
METHOD
MODEL 1
M C 0.69
I C 0.68
N C 0.47
V E 0.69
A E 0.79
V E 0.73
N E 0.58
G C 0.51
Y C 0.49
G H 0.42
T H 0.69
I H 0.78
G H 0.91
K H 0.95
R H 0.94
V H 0.96
A H 0.95
D H 0.89
A H 0.83
I H 0.74
I H 0.49
K C 0.50
Q C 0.84
P C 0.93
D C 0.82
M E 0.61
K E 0.91
L E 0.97
V E 0.97
G E 0.95
V E 0.89
A E 0.72
K C 0.51
T C 0.78
S C 0.92
P C 0.88
N C 0.59
Y H 0.73
E H 0.85
A H 0.89
F H 0.93
I H 0.93
A H 0.90
H H 0.88
R H 0.78
R C 0.52
G C 0.76
I C 0.56
R E 0.77
I E 0.90
Y E 0.90
V E 0.78
P C 0.55
Q C 0.73
Q C 0.58
S H 0.55
I H 0.63
K H 0.62
K H 0.59
F H 0.57
E H 0.55
E C 0.51
S C 0.81
G C 0.84
I C 0.53
P E 0.70
V E 0.66
A E 0.50
G C 0.42
T C 0.59
V H 0.88
E H 0.96
D H 0.96
L H 0.94
I H 0.87
K H 0.61
T C 0.62
S C 0.78
D C 0.58
I E 0.85
V E 0.94
V E 0.91
D E 0.78
T C 0.62
T C 0.89
P C 0.79
N C 0.61
G C 0.73
V C 0.79
G C 0.76
A C 0.57
Q C 0.62
Y C 0.58
K H 0.48
P H 0.58
I H 0.61
Y H 0.60
L H 0.64
Q H 0.61
L C 0.44
Q C 0.63
R C 0.40
N E 0.65
A E 0.80
I E 0.80
F E 0.67
Q C 0.51
G C 0.87
G C 0.90
E C 0.75
K C 0.67
A C 0.67
E C 0.51
V E 0.44
A E 0.47
D E 0.46
I C 0.42
S C 0.45
F H 0.56
S H 0.65
A H 0.74
L H 0.74
C H 0.68
N H 0.55
Y H 0.70
N H 0.79
E H 0.73
A H 0.59
L C 0.50
G C 0.74
K C 0.77
K C 0.59
Y E 0.79
I E 0.95
R E 0.97
V E 0.98
V E 0.96
S E 0.89
C E 0.55
N C 0.78
T C 0.59
T H 0.46
A H 0.44
L H 0.61
L H 0.72
R H 0.71
T H 0.72
I H 0.80
C H 0.73
T H 0.71
V H 0.70
N H 0.48
K H 0.52
V C 0.47
S C 0.59
K C 0.49
V H 0.46
E H 0.50
K H 0.53
V H 0.52
R H 0.42
A E 0.49
T E 0.59
I E 0.63
V E 0.50
R E 0.40
R C 0.36
A C 0.54
A C 0.77
D C 0.89
Q C 0.80
K C 0.53
E H 0.58
V C 0.52
K C 0.57
K C 0.65
G C 0.87
P C 0.69
I H 0.48
N H 0.50
S H 0.51
L C 0.47
V C 0.71
P C 0.88
D C 0.94
P C 0.91
A C 0.82
T C 0.78
V C 0.78
P C 0.75
S H 0.58
H C 0.51
H C 0.76
A C 0.82
K C 0.72
D C 0.52
V H 0.68
N H 0.63
S H 0.53
V H 0.50
I H 0.40
R C 0.41
N C 0.41
L C 0.40
D C 0.44
I H 0.41
A H 0.36
T E 0.35
M E 0.45
A E 0.59
V E 0.61
I E 0.50
A C 0.57
P C 0.55
T H 0.59
T H 0.76
L H 0.74
M H 0.64
H H 0.47
M C 0.52
H C 0.58
F C 0.51
I E 0.66
N E 0.85
I E 0.89
T E 0.88
L E 0.75
K C 0.56
D C 0.72
K C 0.74
V C 0.72
E C 0.71
K H 0.59
K H 0.84
D H 0.89
I H 0.93
L H 0.94
S H 0.93
V H 0.91
L H 0.80
E C 0.48
N C 0.69
T C 0.94
P C 0.90
R E 0.66
I E 0.95
V E 0.98
L E 0.98
I E 0.93
S E 0.71
S C 0.58
K C 0.71
Y C 0.83
D C 0.88
A C 0.65
E C 0.57
A C 0.54
T H 0.76
A H 0.93
E H 0.95
L H 0.97
V H 0.99
E H 0.98
V H 0.98
A H 0.98
R H 0.98
D H 0.95
L H 0.93
K H 0.92
R H 0.89
D H 0.74
R H 0.67
N C 0.54
D H 0.56
I H 0.59
P H 0.47
E H 0.38
V E 0.50
M E 0.64
I E 0.70
F E 0.61
S E 0.44
D C 0.55
S C 0.62
I C 0.54
Y C 0.49
V C 0.46
K C 0.57
D C 0.71
D C 0.75
E C 0.45
V E 0.44
M E 0.59
L E 0.63
M E 0.57
Y E 0.62
A E 0.54
V C 0.37
H C 0.58
Q C 0.52
E C 0.53
S C 0.65
I C 0.58
V C 0.61
V C 0.64
P H 0.47
E H 0.76
N H 0.78
I H 0.94
D H 0.96
A H 0.95
I H 0.96
R H 0.96
A H 0.93
S H 0.92
M H 0.91
K H 0.84
L H 0.76
M H 0.64
S C 0.65
A C 0.68
E C 0.52
D C 0.47
S H 0.55
M H 0.71
R H 0.64
I H 0.45
T C 0.56
N C 0.62
E C 0.55
S C 0.48
L C 0.47
G C 0.47
I E 0.41
L E 0.41
K E 0.37
G E 0.35
Y C 0.39
L C 0.43
I C 0.54
END