PFRMAT SS
TARGET T0053
AUTHOR 1751-3146-3362
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded6-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    9	    6
METHOD	   11	    9
METHOD	    3	    8
METHOD	    7	    3 (1 EHL )
METHOD The input amino acid frequencies were determined from
METHOD alignment t53.t98_6.a2m.gz
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 3.70378
METHOD
MODEL 1
M C 0.82
K C 0.80
K C 0.51
A E 0.83
L E 0.95
L E 0.98
V E 0.98
V E 0.95
S E 0.82
F E 0.53
G C 0.74
T C 0.69
S C 0.62
Y C 0.64
H C 0.68
D C 0.54
T C 0.65
C C 0.64
E C 0.57
K C 0.65
N C 0.76
I C 0.53
V E 0.38
A C 0.43
C C 0.48
E H 0.60
R H 0.78
D H 0.82
L H 0.84
A H 0.76
A H 0.57
S C 0.64
C C 0.92
P C 0.96
D C 0.59
R H 0.74
D H 0.84
L H 0.88
F H 0.90
R H 0.84
A H 0.75
F H 0.58
T C 0.62
S C 0.65
G C 0.46
M H 0.63
I H 0.68
I H 0.84
R H 0.89
K H 0.89
L H 0.84
R H 0.67
Q H 0.51
R C 0.72
D C 0.91
G C 0.82
I C 0.65
D C 0.53
I E 0.42
D C 0.48
T C 0.71
P C 0.58
L H 0.85
Q H 0.92
A H 0.89
L H 0.91
Q H 0.94
K H 0.97
L H 0.96
A H 0.94
A H 0.87
Q H 0.67
G H 0.49
Y C 0.50
Q H 0.43
D H 0.49
V H 0.42
A H 0.42
I H 0.38
Q E 0.38
S E 0.45
L E 0.51
H E 0.58
I E 0.57
I C 0.53
N C 0.75
G C 0.84
D H 0.59
E H 0.75
Y H 0.86
E H 0.92
K H 0.92
I H 0.87
V H 0.83
R H 0.74
E H 0.68
V H 0.79
Q H 0.75
L H 0.68
L H 0.65
R H 0.55
P H 0.54
L H 0.72
F H 0.67
T H 0.60
R H 0.49
L H 0.42
T C 0.60
L C 0.70
G C 0.70
V C 0.66
P C 0.67
L C 0.43
L C 0.41
S C 0.60
S C 0.77
H C 0.74
N C 0.68
D H 0.67
Y H 0.88
V H 0.96
Q H 0.98
L H 0.98
M H 0.99
Q H 0.99
A H 0.98
L H 0.98
R H 0.96
Q H 0.91
Q H 0.64
M C 0.65
P C 0.80
S C 0.57
L C 0.47
R C 0.50
Q C 0.51
T C 0.56
E C 0.47
K E 0.65
V E 0.84
V E 0.88
F E 0.84
M E 0.67
G C 0.70
H C 0.87
G C 0.81
A C 0.58
S H 0.58
H H 0.82
H H 0.88
A H 0.93
F H 0.96
A H 0.95
A H 0.94
Y H 0.93
A H 0.87
C H 0.82
L H 0.87
D H 0.82
H H 0.83
M H 0.79
M H 0.74
T H 0.77
A H 0.74
Q H 0.58
R C 0.51
F C 0.70
P C 0.76
A C 0.58
R C 0.43
V C 0.48
G C 0.69
A C 0.52
V C 0.51
E C 0.63
S C 0.75
Y C 0.90
P C 0.86
E C 0.59
V C 0.49
D C 0.40
I E 0.53
L E 0.58
I E 0.46
D C 0.51
S C 0.56
L C 0.58
R C 0.67
D C 0.75
E C 0.87
G C 0.80
V C 0.68
T C 0.49
G H 0.39
V H 0.45
H H 0.46
L H 0.42
M C 0.57
P H 0.50
L H 0.58
M H 0.58
L H 0.50
V C 0.43
A C 0.76
G C 0.90
D C 0.83
H C 0.63
A C 0.64
I C 0.53
N C 0.49
D C 0.45
M C 0.49
A C 0.52
S C 0.67
D C 0.83
D C 0.87
G C 0.90
D C 0.86
S C 0.69
W C 0.46
K E 0.59
M E 0.71
R E 0.77
F E 0.61
N C 0.60
A C 0.53
A C 0.47
G C 0.50
I C 0.66
P C 0.68
A C 0.62
T C 0.74
P C 0.62
W C 0.42
L E 0.43
S C 0.45
G C 0.56
L C 0.76
G C 0.87
E C 0.83
N C 0.84
P C 0.63
A C 0.46
I H 0.44
R H 0.55
A H 0.73
M H 0.73
F H 0.85
V H 0.91
A H 0.94
H H 0.91
L H 0.93
H H 0.93
Q H 0.94
A H 0.91
L H 0.90
N H 0.88
M H 0.92
A H 0.90
V H 0.93
E H 0.94
E H 0.91
A H 0.85
A H 0.64
END