PFRMAT SS
TARGET T0053_1:60
AUTHOR 1751-3146-3362
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded6-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    9	    6
METHOD	   11	    9
METHOD	    3	    8
METHOD	    7	    3 (1 EHL )
METHOD The input amino acid frequencies were determined from
METHOD alignment t53-first.t98_6.a2m.gz
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 1.98026
METHOD
MODEL 1
M C 0.86
K C 0.84
K E 0.54
A E 0.87
L E 0.95
L E 0.95
V E 0.93
V E 0.82
S E 0.56
F C 0.60
G C 0.75
T C 0.59
S C 0.50
Y C 0.51
H C 0.53
D H 0.49
T C 0.50
C C 0.57
E C 0.52
K C 0.59
N C 0.71
I C 0.59
V C 0.40
A C 0.43
C C 0.45
E H 0.42
R H 0.53
D H 0.54
L H 0.58
A C 0.47
A C 0.61
S C 0.78
C C 0.93
P C 0.95
D C 0.55
R H 0.78
D H 0.88
L H 0.92
F H 0.93
R H 0.91
A H 0.85
F H 0.72
T C 0.47
S H 0.47
G H 0.56
M H 0.60
I H 0.63
I H 0.77
R H 0.81
K H 0.79
L H 0.72
R H 0.53
Q C 0.51
R C 0.75
D C 0.89
G C 0.83
I C 0.68
D C 0.58
I C 0.63
D C 0.80
END