PFRMAT SS
TARGET T0051
AUTHOR 1751-3146-3362
METHOD Using neural net fssp-12345-IDaa1-9-6-11-9-3-8-7-ehl-seeded6-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    9	    6
METHOD	   11	    9
METHOD	    3	    8
METHOD	    7	    3 (1 EHL )
METHOD The input amino acid frequencies were determined from
METHOD alignment t51.t98_6.a2m.gz
METHOD with weighted counts, using HenikoffWeight(1 bits/column, 0.5)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 2.3971
METHOD
MODEL 1
M C 0.47
E C 0.38
L E 0.40
K C 0.55
N C 0.73
K C 0.77
K C 0.68
W C 0.69
T C 0.73
D H 0.51
E H 0.83
E H 0.83
F H 0.79
H H 0.83
K H 0.86
Q H 0.80
R H 0.89
E H 0.90
E H 0.87
V H 0.82
L H 0.74
Q H 0.53
Q C 0.41
W C 0.63
P C 0.76
T C 0.78
G C 0.89
K C 0.78
E C 0.50
V C 0.45
D C 0.51
L H 0.40
Q H 0.65
E H 0.68
A H 0.67
V H 0.70
D H 0.62
Y H 0.65
L H 0.59
K H 0.41
K C 0.51
I C 0.60
P C 0.68
A H 0.61
E H 0.79
K H 0.83
N H 0.82
F H 0.85
A H 0.91
E H 0.92
K H 0.91
L H 0.87
V H 0.82
L H 0.73
A H 0.65
K H 0.53
K C 0.58
K C 0.74
G C 0.68
I C 0.53
T E 0.45
M E 0.50
A C 0.51
Q C 0.81
P C 0.84
R C 0.60
A C 0.62
G C 0.50
V H 0.62
A H 0.71
L H 0.56
L H 0.82
D H 0.93
E H 0.96
H H 0.97
I H 0.98
E H 0.98
L H 0.97
L H 0.97
R H 0.93
Y H 0.87
L H 0.79
Q H 0.59
D H 0.57
E C 0.68
G C 0.92
G C 0.84
A C 0.72
D C 0.63
F C 0.61
L C 0.63
P C 0.65
S C 0.57
T H 0.53
I H 0.67
D H 0.60
A H 0.56
Y H 0.45
T C 0.47
R C 0.50
Q C 0.66
N C 0.78
R C 0.52
Y H 0.57
D H 0.74
E H 0.80
C H 0.80
E H 0.76
N H 0.55
G C 0.67
I C 0.56
K C 0.50
E C 0.51
S H 0.46
E H 0.69
K H 0.64
A C 0.57
G C 0.67
R C 0.58
S C 0.52
L C 0.45
L C 0.58
N C 0.80
G C 0.82
F C 0.89
P C 0.83
G C 0.58
V C 0.42
N C 0.40
Y C 0.51
G C 0.65
V H 0.45
K H 0.54
G C 0.51
C H 0.65
R H 0.87
K H 0.89
V H 0.90
L H 0.92
E H 0.89
A H 0.78
V H 0.57
N C 0.63
L C 0.72
P C 0.72
L C 0.46
Q E 0.46
A E 0.47
R C 0.45
H C 0.61
G C 0.82
T C 0.92
P C 0.86
D C 0.49
S H 0.80
R H 0.91
L H 0.94
L H 0.97
A H 0.98
E H 0.97
I H 0.96
I H 0.92
H H 0.78
A H 0.52
G C 0.85
G C 0.88
W C 0.67
T C 0.60
S C 0.70
N C 0.68
E C 0.68
G C 0.88
G C 0.90
G C 0.76
I E 0.52
S E 0.66
Y E 0.57
N C 0.56
V C 0.61
P C 0.71
Y C 0.53
A C 0.50
K C 0.55
N C 0.54
V C 0.44
T C 0.44
I C 0.36
E H 0.52
K H 0.53
S H 0.45
L H 0.49
L H 0.47
D H 0.59
W H 0.72
Q H 0.69
Y H 0.55
C H 0.54
D H 0.49
R H 0.46
L C 0.41
V C 0.53
G C 0.58
F C 0.47
Y C 0.37
E H 0.44
E C 0.50
Q C 0.75
G C 0.73
V E 0.60
H E 0.79
I E 0.66
N C 0.58
R C 0.65
E C 0.82
P C 0.80
F C 0.79
G C 0.88
P C 0.81
L C 0.70
T C 0.63
G C 0.69
T C 0.72
L C 0.52
V C 0.59
P C 0.77
P C 0.73
S H 0.49
M H 0.62
S H 0.65
N H 0.79
A H 0.87
V H 0.88
G H 0.90
I H 0.93
T H 0.97
E H 0.98
A H 0.98
L H 0.98
L H 0.98
A H 0.97
A H 0.96
E H 0.91
Q H 0.56
G C 0.68
V C 0.66
K C 0.56
N E 0.64
I E 0.79
T E 0.81
V E 0.66
G C 0.62
Y C 0.65
G C 0.72
E C 0.60
C C 0.47
G H 0.51
N H 0.63
M H 0.77
I H 0.91
Q H 0.93
D H 0.94
I H 0.96
A H 0.96
A H 0.94
L H 0.95
R H 0.94
C H 0.91
L H 0.95
E H 0.95
E H 0.94
Q H 0.82
T H 0.80
N H 0.89
E H 0.91
Y H 0.91
L H 0.91
K H 0.85
A H 0.71
Y C 0.55
G C 0.72
Y C 0.76
N C 0.81
D C 0.65
V C 0.50
F E 0.53
V E 0.54
T E 0.51
T E 0.51
V E 0.49
F E 0.38
H H 0.47
Q H 0.47
W H 0.47
M C 0.52
G C 0.82
G C 0.90
F C 0.92
P C 0.79
Q H 0.58
D H 0.62
E H 0.65
S H 0.57
K H 0.71
A H 0.64
F H 0.57
G H 0.56
V H 0.53
I H 0.66
V H 0.85
T H 0.88
A H 0.95
T H 0.98
T H 0.98
I H 0.99
A H 0.98
A H 0.96
L H 0.91
A H 0.60
G C 0.72
A C 0.75
T E 0.51
K E 0.87
V E 0.95
I E 0.93
V E 0.85
K C 0.50
T C 0.91
P C 0.90
H C 0.66
E C 0.57
A C 0.50
I E 0.49
G C 0.49
I C 0.59
P C 0.77
T C 0.47
K H 0.80
E H 0.83
A H 0.75
N H 0.73
A H 0.76
A H 0.68
G H 0.65
I H 0.85
K H 0.91
A H 0.89
T H 0.96
K H 0.98
M H 0.98
A H 0.96
L H 0.96
N H 0.91
M H 0.86
L H 0.69
E C 0.48
G C 0.76
Q C 0.81
R C 0.72
M C 0.76
P C 0.85
M C 0.73
S C 0.52
K H 0.59
E C 0.55
L H 0.57
E H 0.70
T H 0.74
E H 0.65
M H 0.63
A H 0.61
V H 0.51
I H 0.61
K H 0.75
A H 0.88
E H 0.89
T H 0.94
K H 0.93
C H 0.92
I H 0.84
L H 0.88
D H 0.80
K H 0.77
M H 0.74
F H 0.56
E H 0.47
L C 0.55
G C 0.90
K C 0.87
G C 0.83
D C 0.64
L E 0.60
A E 0.65
I E 0.58
G C 0.49
T C 0.45
V H 0.48
K H 0.65
A H 0.62
F H 0.59
E H 0.46
T C 0.61
G C 0.71
V C 0.57
M E 0.49
D C 0.49
I C 0.65
P C 0.68
F C 0.71
G C 0.86
P C 0.84
S C 0.70
K C 0.58
Y C 0.71
N C 0.78
A C 0.73
G C 0.84
K C 0.61
M E 0.59
M E 0.59
P E 0.54
V E 0.53
R C 0.55
D C 0.78
N C 0.88
L C 0.84
G C 0.84
C E 0.49
V E 0.81
R E 0.90
Y E 0.92
L E 0.90
E E 0.80
F C 0.53
G C 0.88
N C 0.86
V C 0.80
P C 0.80
F C 0.58
T H 0.77
E H 0.90
E H 0.90
I H 0.86
K H 0.79
N H 0.71
Y C 0.54
N C 0.59
R H 0.79
E H 0.85
R H 0.81
L H 0.91
Q H 0.93
E H 0.92
R H 0.80
A H 0.64
K H 0.43
F C 0.42
E C 0.54
G C 0.77
R C 0.77
D C 0.56
V E 0.48
S E 0.61
F E 0.68
Q E 0.75
M E 0.81
V E 0.77
I E 0.54
D C 0.53
D H 0.45
I H 0.73
F H 0.65
A H 0.58
V C 0.51
G C 0.80
K C 0.72
G C 0.57
R E 0.47
L E 0.60
I E 0.61
G C 0.58
R C 0.86
P C 0.89
E C 0.70
END